AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480020722.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020722.01.T01 MTR_4g057595 95.417 480 22 0 19 498 21 500 0.0 962
MsG0480020722.01.T01 MTR_4g057585 90.909 495 42 2 1 493 1 494 0.0 929
MsG0480020722.01.T01 MTR_4g057600 74.597 496 122 2 1 494 1 494 0.0 779
MsG0480020722.01.T01 MTR_2g095750 65.323 496 162 6 7 497 13 503 0.0 677
MsG0480020722.01.T01 MTR_2g095730 62.702 496 167 8 9 497 16 500 0.0 627
MsG0480020722.01.T01 MTR_1g094155 61.677 501 169 6 3 496 7 491 0.0 624
MsG0480020722.01.T01 MTR_4g057570 64.167 480 158 7 19 493 21 491 0.0 623
MsG0480020722.01.T01 MTR_1g050545 60.887 496 179 4 7 498 3 487 0.0 604
MsG0480020722.01.T01 MTR_2g095710 58.963 463 172 8 34 493 35 482 0.0 536
MsG0480020722.01.T01 MTR_5g097180 33.005 406 255 7 91 489 37 432 3.10e-70 231
MsG0480020722.01.T01 MTR_4g084710 32.020 406 259 7 91 489 39 434 3.44e-66 221
MsG0480020722.01.T01 MTR_3g079560 30.913 427 237 14 95 493 92 488 2.67e-55 192
MsG0480020722.01.T01 MTR_3g079590 29.767 430 238 14 95 493 92 488 2.60e-51 182
MsG0480020722.01.T01 MTR_3g079570 30.193 414 256 12 95 493 93 488 3.58e-51 182
MsG0480020722.01.T01 MTR_3g034290 28.163 490 314 12 27 491 10 486 3.93e-50 179
MsG0480020722.01.T01 MTR_3g079600 29.929 421 252 12 95 493 90 489 4.45e-50 179
MsG0480020722.01.T01 MTR_3g079630 31.368 424 247 15 95 493 92 496 4.53e-50 179
MsG0480020722.01.T01 MTR_7g080180 27.922 462 260 12 95 491 42 495 7.88e-50 178
MsG0480020722.01.T01 MTR_3g434850 30.536 429 244 18 95 491 44 450 9.54e-50 177
MsG0480020722.01.T01 MTR_8g011350 28.446 457 260 11 95 492 45 493 1.46e-49 177
MsG0480020722.01.T01 MTR_4g122960 28.378 444 262 13 88 492 46 472 2.67e-48 174
MsG0480020722.01.T01 MTR_3g079620 29.930 431 258 15 88 493 85 496 7.25e-48 173
MsG0480020722.01.T01 MTR_4g122950 28.046 435 277 12 88 492 46 474 7.55e-48 172
MsG0480020722.01.T01 MTR_1g021010 30.184 434 267 12 76 493 71 484 8.10e-48 172
MsG0480020722.01.T01 MTR_2g063000 29.742 427 250 13 95 491 53 459 2.84e-47 171
MsG0480020722.01.T01 MTR_1g020090 28.982 452 270 13 67 493 70 495 2.85e-47 171
MsG0480020722.01.T01 MTR_7g051430 28.139 462 254 11 95 491 44 492 7.22e-47 170
MsG0480020722.01.T01 MTR_2g062990 30.310 419 256 13 95 491 54 458 7.48e-47 169
MsG0480020722.01.T01 MTR_5g072570 29.279 444 265 13 88 497 37 465 2.53e-46 168
MsG0480020722.01.T01 MTR_2g062980 30.024 413 265 12 95 491 54 458 5.63e-46 167
MsG0480020722.01.T01 MTR_4g089155 28.235 425 273 12 92 491 64 481 7.85e-46 167
MsG0480020722.01.T01 MTR_3g045770 29.953 424 257 12 97 493 43 453 1.07e-45 166
MsG0480020722.01.T01 MTR_7g051430 36.220 254 143 4 95 342 44 284 2.75e-45 164
MsG0480020722.01.T01 MTR_2g449850 28.959 442 252 18 86 491 43 458 3.10e-45 165
MsG0480020722.01.T01 MTR_3g498755 29.108 426 256 15 97 491 31 441 4.91e-45 164
MsG0480020722.01.T01 MTR_2g081620 28.770 431 257 13 95 496 55 464 1.64e-44 163
MsG0480020722.01.T01 MTR_1g040370 30.170 411 247 13 86 491 36 411 1.77e-44 162
MsG0480020722.01.T01 MTR_1g021020 29.040 427 256 13 88 493 85 485 2.72e-44 163
MsG0480020722.01.T01 MTR_4g021530 27.719 469 272 15 62 489 23 465 2.83e-44 162
MsG0480020722.01.T01 MTR_8g099930 27.725 422 266 12 95 489 47 456 2.92e-44 162
MsG0480020722.01.T01 MTR_3g100420 27.570 428 251 12 107 492 84 494 4.13e-44 162
MsG0480020722.01.T01 MTR_7g021130 28.704 432 257 17 92 491 41 453 1.65e-43 160
MsG0480020722.01.T01 MTR_4g021510 27.938 451 286 13 65 488 25 463 3.71e-43 159
MsG0480020722.01.T01 MTR_1g095560 28.538 424 256 13 95 490 47 451 3.76e-43 159
MsG0480020722.01.T01 MTR_2g018600 26.777 422 273 9 97 489 50 464 4.73e-43 159
MsG0480020722.01.T01 MTR_3g090130 28.640 419 269 12 95 491 42 452 5.08e-43 159
MsG0480020722.01.T01 MTR_3g090150 29.070 430 268 14 88 491 41 459 2.54e-42 157
MsG0480020722.01.T01 MTR_1g095560 27.716 451 257 15 95 490 47 483 3.13e-42 157
MsG0480020722.01.T01 MTR_8g011350 27.842 431 244 11 95 466 45 467 3.70e-42 157
MsG0480020722.01.T01 MTR_2g018590 27.252 433 260 11 96 489 48 464 4.22e-42 156
MsG0480020722.01.T01 MTR_0003s0560 27.442 430 262 13 87 491 79 483 5.57e-42 156
MsG0480020722.01.T01 MTR_7g080180 35.521 259 146 6 95 342 42 290 1.34e-41 155
MsG0480020722.01.T01 MTR_4g021490 29.024 410 249 13 109 489 69 465 2.40e-41 154
MsG0480020722.01.T01 MTR_2g018630 26.730 419 270 10 97 489 53 460 2.52e-41 154
MsG0480020722.01.T01 MTR_3g034290 28.501 407 259 10 27 409 10 408 4.94e-41 152
MsG0480020722.01.T01 MTR_4g021535 27.553 421 241 14 109 489 65 461 5.02e-41 153
MsG0480020722.01.T01 MTR_7g013790 28.966 435 244 15 97 491 51 460 2.75e-40 151
MsG0480020722.01.T01 MTR_4g021500 29.327 416 238 13 109 488 69 464 3.51e-40 155
MsG0480020722.01.T01 MTR_4g021500 26.411 443 281 14 68 489 464 882 1.04e-39 154
MsG0480020722.01.T01 MTR_4g021500 29.327 416 238 13 109 488 69 464 4.20e-40 155
MsG0480020722.01.T01 MTR_4g021500 25.482 467 273 14 68 489 464 900 1.62e-37 147
MsG0480020722.01.T01 MTR_4g021520 28.802 434 244 15 97 489 56 465 5.02e-40 150
MsG0480020722.01.T01 MTR_2g012850 27.123 424 271 11 95 491 49 461 1.71e-39 149
MsG0480020722.01.T01 MTR_1g095540 27.419 434 260 15 88 489 40 450 3.06e-39 148
MsG0480020722.01.T01 MTR_4g075150 29.767 430 247 16 95 489 48 457 8.10e-39 147
MsG0480020722.01.T01 MTR_4g075150 28.438 429 252 16 95 489 48 455 1.08e-38 147
MsG0480020722.01.T01 MTR_2g012860 25.346 434 274 10 92 491 52 469 3.67e-38 145
MsG0480020722.01.T01 MTR_0003s0560 34.762 210 133 4 87 293 79 287 1.17e-34 133
MsG0480020722.01.T01 MTR_4g056520 25.917 436 271 11 91 487 29 451 1.58e-34 135
MsG0480020722.01.T01 MTR_2g063000 26.887 424 235 13 95 491 53 428 4.10e-34 134
MsG0480020722.01.T01 MTR_4g021520 28.967 397 218 14 97 453 56 428 3.18e-33 131
MsG0480020722.01.T01 MTR_2g009200 23.023 430 242 14 106 490 50 435 4.10e-29 119
MsG0480020722.01.T01 MTR_2g084530 26.897 435 264 14 91 486 29 448 1.26e-27 115
MsG0480020722.01.T01 MTR_2g018630 24.859 354 235 9 156 489 13 355 6.01e-25 106
MsG0480020722.01.T01 MTR_1g102130 23.666 431 242 17 97 491 107 486 5.04e-22 99.4
MsG0480020722.01.T01 MTR_4g021535 22.556 399 242 11 109 489 65 414 1.55e-21 97.1
MsG0480020722.01.T01 MTR_0075s0010 40.230 87 44 3 110 189 35 120 1.93e-13 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020722.01.T01 AT3G45010 62.851 498 171 5 6 494 9 501 0.0 656
MsG0480020722.01.T01 AT3G10410 62.475 493 175 6 7 493 8 496 0.0 648
MsG0480020722.01.T01 AT5G22980 61.310 504 180 7 4 498 3 500 0.0 632
MsG0480020722.01.T01 AT5G22960 58.065 186 58 3 70 254 8 174 1.05e-66 213
MsG0480020722.01.T01 AT1G15000 31.941 407 257 9 91 491 31 423 3.94e-66 220
MsG0480020722.01.T01 AT3G25420 28.942 463 248 11 95 491 44 491 1.14e-56 196
MsG0480020722.01.T01 AT4G12910 28.976 459 253 11 95 492 49 495 2.19e-54 190
MsG0480020722.01.T01 AT3G52000 29.594 419 264 9 88 490 71 474 5.05e-52 184
MsG0480020722.01.T01 AT3G52010 29.302 430 255 12 88 490 72 479 4.69e-51 181
MsG0480020722.01.T01 AT1G73300 27.700 426 271 12 81 491 35 438 6.14e-51 180
MsG0480020722.01.T01 AT1G73300 27.700 426 271 12 81 491 35 438 6.14e-51 180
MsG0480020722.01.T01 AT2G22920 29.054 444 273 16 66 492 15 433 6.63e-51 179
MsG0480020722.01.T01 AT3G12203 28.675 415 252 14 96 491 24 413 1.33e-50 178
MsG0480020722.01.T01 AT3G12203 28.606 416 253 14 96 492 45 435 2.57e-50 178
MsG0480020722.01.T01 AT3G12203 29.177 401 240 14 110 491 1 376 1.00e-49 175
MsG0480020722.01.T01 AT3G52020 30.024 423 260 16 88 490 87 493 1.41e-49 177
MsG0480020722.01.T01 AT1G73280 27.253 455 279 14 59 492 16 439 1.55e-49 176
MsG0480020722.01.T01 AT3G17180 30.698 430 258 16 93 491 51 471 2.18e-49 176
MsG0480020722.01.T01 AT2G23010 27.273 440 287 11 65 491 15 434 2.49e-49 175
MsG0480020722.01.T01 AT5G08260 32.184 435 238 18 95 489 53 470 4.68e-49 176
MsG0480020722.01.T01 AT2G23010 27.045 440 288 11 65 491 15 434 8.73e-49 174
MsG0480020722.01.T01 AT1G73270 27.139 409 265 9 97 491 49 438 1.07e-48 174
MsG0480020722.01.T01 AT2G22980 27.891 441 265 15 68 489 19 425 1.15e-48 173
MsG0480020722.01.T01 AT1G73310 27.059 425 275 11 81 491 35 438 1.20e-48 174
MsG0480020722.01.T01 AT1G73270 27.073 410 266 9 96 491 48 438 1.33e-48 174
MsG0480020722.01.T01 AT5G36180 27.913 412 260 12 96 491 48 438 3.36e-48 172
MsG0480020722.01.T01 AT5G23210 31.435 439 243 17 95 489 65 489 2.50e-47 171
MsG0480020722.01.T01 AT2G22970 27.438 441 275 16 68 491 18 430 3.56e-47 169
MsG0480020722.01.T01 AT1G73290 26.895 409 268 8 96 492 47 436 5.77e-47 169
MsG0480020722.01.T01 AT2G35770 27.594 424 269 8 88 489 45 452 1.11e-46 169
MsG0480020722.01.T01 AT2G22920 30.548 383 231 13 66 432 15 378 1.49e-46 167
MsG0480020722.01.T01 AT4G15100 29.186 442 261 16 95 498 58 485 1.63e-46 169
MsG0480020722.01.T01 AT3G63470 29.274 427 242 17 95 490 95 492 3.47e-46 168
MsG0480020722.01.T01 AT4G12910 29.114 395 213 9 95 429 49 436 5.30e-46 167
MsG0480020722.01.T01 AT3G10450 27.488 422 267 14 86 491 36 434 7.02e-46 166
MsG0480020722.01.T01 AT4G30810 27.488 422 272 10 93 492 50 459 3.02e-45 165
MsG0480020722.01.T01 AT2G22980 28.117 409 243 13 68 458 19 394 8.18e-45 162
MsG0480020722.01.T01 AT3G07990 27.725 422 274 12 88 489 41 451 8.86e-45 164
MsG0480020722.01.T01 AT3G10450 27.139 409 261 13 99 491 4 391 1.05e-44 162
MsG0480020722.01.T01 AT2G22980 28.467 411 239 14 68 458 19 394 1.46e-44 162
MsG0480020722.01.T01 AT3G12220 29.087 416 254 17 96 493 42 434 1.90e-44 162
MsG0480020722.01.T01 AT3G12240 28.261 414 258 15 96 492 43 434 3.03e-44 161
MsG0480020722.01.T01 AT1G73290 28.448 348 225 5 96 432 47 381 3.18e-44 160
MsG0480020722.01.T01 AT3G12220 29.529 403 243 17 109 493 25 404 1.14e-43 159
MsG0480020722.01.T01 AT2G24000 29.009 424 262 14 97 492 46 458 2.17e-43 160
MsG0480020722.01.T01 AT1G73310 27.671 365 236 8 81 432 35 384 3.89e-43 158
MsG0480020722.01.T01 AT2G22970 28.871 381 233 13 68 432 18 376 5.90e-43 157
MsG0480020722.01.T01 AT2G22970 28.871 381 233 13 68 432 18 376 1.00e-42 157
MsG0480020722.01.T01 AT1G61130 28.571 420 269 12 95 491 45 456 1.58e-42 157
MsG0480020722.01.T01 AT2G12480 28.392 398 266 8 97 491 47 428 1.88e-42 157
MsG0480020722.01.T01 AT2G12480 28.856 402 260 10 97 491 47 429 2.03e-42 157
MsG0480020722.01.T01 AT2G22990 26.606 436 265 16 81 491 25 430 2.38e-42 156
MsG0480020722.01.T01 AT2G22920 32.907 313 180 10 68 368 18 312 2.45e-42 153
MsG0480020722.01.T01 AT1G73290 36.735 196 118 1 96 285 47 242 2.94e-42 153
MsG0480020722.01.T01 AT1G28110 27.880 434 254 17 95 492 45 455 2.96e-42 157
MsG0480020722.01.T01 AT1G28110 27.880 434 254 17 95 492 45 455 2.96e-42 157
MsG0480020722.01.T01 AT2G23000 26.730 419 258 13 97 491 41 434 3.82e-42 156
MsG0480020722.01.T01 AT2G23000 26.730 419 258 13 97 491 41 434 3.82e-42 156
MsG0480020722.01.T01 AT1G33540 27.021 433 264 13 96 491 44 461 7.07e-42 155
MsG0480020722.01.T01 AT3G12230 28.846 416 253 17 96 492 42 433 1.52e-41 154
MsG0480020722.01.T01 AT2G12480 28.392 398 265 9 97 491 47 427 1.57e-41 154
MsG0480020722.01.T01 AT3G10450 28.729 362 226 11 86 432 36 380 1.67e-41 154
MsG0480020722.01.T01 AT1G11080 28.959 442 249 17 95 491 64 485 1.87e-41 155
MsG0480020722.01.T01 AT1G11080 28.959 442 249 17 95 491 64 485 2.07e-41 155
MsG0480020722.01.T01 AT1G43780 29.907 428 253 14 97 491 53 466 2.16e-41 155
MsG0480020722.01.T01 AT5G23210 40.887 203 115 4 95 292 65 267 2.24e-41 154
MsG0480020722.01.T01 AT1G33540 26.977 430 262 13 99 491 4 418 2.44e-41 153
MsG0480020722.01.T01 AT3G02110 27.982 436 252 16 97 491 53 467 3.17e-41 154
MsG0480020722.01.T01 AT2G35780 27.314 443 271 12 76 489 25 445 3.55e-41 154
MsG0480020722.01.T01 AT2G24010 28.986 414 263 12 97 491 46 447 6.47e-41 153
MsG0480020722.01.T01 AT4G30610 29.070 430 259 17 93 491 44 458 6.78e-41 153
MsG0480020722.01.T01 AT5G42240 29.412 425 262 13 95 491 46 460 8.65e-41 153
MsG0480020722.01.T01 AT2G33530 27.252 433 260 16 95 492 47 459 1.87e-40 152
MsG0480020722.01.T01 AT5G42230 28.571 427 263 9 95 491 42 456 2.19e-40 152
MsG0480020722.01.T01 AT5G42230 28.571 427 263 9 95 491 42 456 2.19e-40 152
MsG0480020722.01.T01 AT3G10450 28.367 349 220 10 99 432 4 337 2.74e-40 149
MsG0480020722.01.T01 AT2G12480 27.857 420 265 9 97 491 47 453 4.04e-40 151
MsG0480020722.01.T01 AT2G22970 38.725 204 111 5 68 264 18 214 9.26e-40 146
MsG0480020722.01.T01 AT1G73280 30.189 318 201 7 59 368 16 320 9.38e-40 148
MsG0480020722.01.T01 AT3G12220 36.032 247 141 7 96 326 42 287 1.53e-39 147
MsG0480020722.01.T01 AT5G09640 25.780 481 267 17 66 491 17 462 1.89e-39 149
MsG0480020722.01.T01 AT3G17180 31.063 367 219 14 93 429 51 413 3.49e-39 148
MsG0480020722.01.T01 AT2G22980 30.351 313 185 9 68 368 19 310 4.27e-39 145
MsG0480020722.01.T01 AT2G05850 26.014 419 282 12 88 489 71 478 4.61e-39 148
MsG0480020722.01.T01 AT2G22990 26.866 402 241 14 81 458 25 397 2.04e-38 145
MsG0480020722.01.T01 AT2G22990 26.434 401 244 13 81 458 25 397 4.51e-38 145
MsG0480020722.01.T01 AT2G24010 27.739 429 264 13 97 491 46 462 3.18e-36 140
MsG0480020722.01.T01 AT5G23210 30.923 401 219 17 133 489 8 394 7.05e-36 138
MsG0480020722.01.T01 AT5G23210 30.750 400 219 17 134 489 8 393 3.09e-35 136
MsG0480020722.01.T01 AT2G22990 25.229 436 262 17 81 491 25 421 1.23e-34 135
MsG0480020722.01.T01 AT2G27920 27.397 438 257 17 94 486 32 453 1.50e-32 129
MsG0480020722.01.T01 AT3G56540 40.136 147 85 3 88 232 87 232 9.06e-32 123
MsG0480020722.01.T01 AT1G73280 26.211 351 218 11 156 491 12 336 1.28e-31 124
MsG0480020722.01.T01 AT2G24010 26.211 454 264 14 97 491 17 458 1.89e-31 126
MsG0480020722.01.T01 AT5G36180 26.590 346 223 11 156 491 12 336 1.91e-30 121
MsG0480020722.01.T01 AT5G36180 26.590 346 223 11 156 491 12 336 1.91e-30 121
MsG0480020722.01.T01 AT2G24010 33.471 242 137 7 97 318 17 254 2.13e-29 119
MsG0480020722.01.T01 AT5G23210 41.463 164 91 4 134 292 8 171 2.42e-29 119
MsG0480020722.01.T01 AT1G73280 24.926 337 212 11 170 491 1 311 1.02e-26 110
MsG0480020722.01.T01 AT5G36180 26.036 338 215 10 156 475 12 332 6.91e-26 108
MsG0480020722.01.T01 AT5G36180 27.622 286 183 8 156 432 12 282 7.10e-26 108
MsG0480020722.01.T01 AT1G73310 27.835 291 176 10 156 432 12 282 1.57e-25 107
MsG0480020722.01.T01 AT2G27920 26.446 363 216 13 164 486 30 381 2.00e-25 108
MsG0480020722.01.T01 AT2G22990 24.198 343 213 13 168 491 2 316 4.44e-24 103
MsG0480020722.01.T01 AT2G22990 23.907 343 214 13 168 491 2 316 1.49e-23 101
MsG0480020722.01.T01 AT2G22980 25.490 306 183 10 168 458 2 277 5.42e-23 99.4
MsG0480020722.01.T01 AT2G27920 25.429 350 210 13 177 486 48 386 5.12e-20 92.4

Find 96 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTAATTACCTTGCGGATT+TGG 0.221438 4:-46991235 None:intergenic
CGTTGGTTTGGTGAAAATTT+TGG 0.249695 4:-46991021 None:intergenic
TCTCTTGTGTGGAATGATTA+TGG 0.249738 4:+46992120 MsG0480020722.01.T01:CDS
TTTGGCCAGGGAATTCAAAA+TGG 0.267534 4:+46994258 MsG0480020722.01.T01:intron
AAGAATGACTTCTATATTAC+TGG 0.289799 4:+46992778 MsG0480020722.01.T01:CDS
CCACACAAGAGACAAGTTAT+TGG 0.301922 4:-46992109 None:intergenic
GATCCTTATCTCAATGTTAG+AGG 0.317651 4:-46994655 None:intergenic
ATGTTCCTGCTCTTGCATCT+AGG 0.318626 4:+46992821 MsG0480020722.01.T01:CDS
CACTTCAGATGTTGGCAAAC+TGG 0.324425 4:+46994552 MsG0480020722.01.T01:CDS
TAAACTGAGAGTTTGAAAAT+AGG 0.334816 4:-46994735 None:intergenic
ATTCCATCCTCAAGAAGTTC+AGG 0.338717 4:-46993912 None:intergenic
GCAGGATTGTTGAATAGTTA+TGG 0.361275 4:+46994359 MsG0480020722.01.T01:CDS
TTTATGGCAACCTCGCAATC+TGG 0.365782 4:-46993303 None:intergenic
TCACCATGAATTATATTAAC+TGG 0.366105 4:-46991087 None:intergenic
TTAGGGATGCTTTAGGTGTT+GGG 0.366917 4:+46993808 MsG0480020722.01.T01:CDS
ATTATATTAACTGGATCCTT+TGG 0.371296 4:-46991078 None:intergenic
ATGACTTCATGTATAATGTT+TGG 0.371558 4:+46994695 MsG0480020722.01.T01:three_prime_UTR
CCAGTCAACCATATCACAAC+TGG 0.373577 4:-46992027 None:intergenic
TGATTTGTATGACTTCTTGC+AGG 0.374846 4:+46992628 MsG0480020722.01.T01:CDS
AAGACAGTTAGGGATGCTTT+AGG 0.377229 4:+46993801 MsG0480020722.01.T01:CDS
TATGCTTGGTACTGAATTGC+TGG 0.395817 4:-46993213 None:intergenic
AAGTCATTCTTAACAAACTT+AGG 0.397900 4:-46992766 None:intergenic
TGTTCCTGCTCTTGCATCTA+GGG 0.398381 4:+46992822 MsG0480020722.01.T01:CDS
ATTAAAGTTCTTATATATGC+TGG 0.402158 4:+46993933 MsG0480020722.01.T01:CDS
AACATCTGAAGTGCAGCTTT+TGG 0.416607 4:-46994542 None:intergenic
TACATTAACGTTACCGGCAA+TGG 0.417475 4:-46993614 None:intergenic
GGATGCATGGGAACTTGAAT+AGG 0.421333 4:+46994573 MsG0480020722.01.T01:CDS
GATCCAGTTAATATAATTCA+TGG 0.424315 4:+46991084 MsG0480020722.01.T01:CDS
TATCTGTTCACATTGTTGTA+AGG 0.425655 4:-46993575 None:intergenic
GGTGAATGGGGCAGGACATA+TGG 0.430010 4:+46994505 MsG0480020722.01.T01:intron
AGTACTTACATTAACGTTAC+CGG 0.431784 4:-46993620 None:intergenic
AGTCATTCTTAACAAACTTA+GGG 0.434933 4:-46992765 None:intergenic
AGGGTTCACCATGGAAATAA+AGG 0.441831 4:+46992841 MsG0480020722.01.T01:CDS
GTTAGGGATGCTTTAGGTGT+TGG 0.454819 4:+46993807 MsG0480020722.01.T01:CDS
ATAATGCAATGTTGCAAGAT+TGG 0.457321 4:+46993865 MsG0480020722.01.T01:CDS
TTAAAGTTCTTATATATGCT+GGG 0.458726 4:+46993934 MsG0480020722.01.T01:CDS
AGGATGCCCCAGTTGTGATA+TGG 0.462648 4:+46992019 MsG0480020722.01.T01:CDS
GATATTCCACATGATGAAAC+TGG 0.479658 4:+46992596 MsG0480020722.01.T01:CDS
TAGCTAAAACCTGTCCCAAT+TGG 0.482214 4:-46992557 None:intergenic
TTATGGCAACCTCGCAATCT+GGG 0.484542 4:-46993302 None:intergenic
TGACCGAGATCTTCAATAGA+AGG 0.490638 4:-46991183 None:intergenic
GGCAGGACATATGGTCCCTA+TGG 0.494483 4:+46994514 MsG0480020722.01.T01:CDS
TTGGCCAGGGAATTCAAAAT+GGG 0.496576 4:+46994259 MsG0480020722.01.T01:intron
ATGCAAACTGAGAGTATGCT+TGG 0.507916 4:-46993227 None:intergenic
ATTCCTGAACTTCTTGAGGA+TGG 0.511069 4:+46993909 MsG0480020722.01.T01:CDS
GTGATGTGTAACAGGTGAAT+GGG 0.514606 4:+46994492 MsG0480020722.01.T01:intron
AAGCTTTAACTTATTGCCAA+AGG 0.518571 4:+46991062 MsG0480020722.01.T01:CDS
ATATGGTTGACTGGAGGTCC+AGG 0.522115 4:+46992036 MsG0480020722.01.T01:CDS
TTGGTACTGAATTGCTGGAT+TGG 0.523254 4:-46993208 None:intergenic
ACGAGGAAGCGAATAGTATC+CGG 0.523737 4:-46991211 None:intergenic
GTTCATGCAATGAAGTGGTC+AGG 0.523840 4:+46994281 MsG0480020722.01.T01:CDS
TTGTGTGGAATGATTATGGT+TGG 0.526168 4:+46992124 MsG0480020722.01.T01:CDS
TTTGAATTGGCAGAGAGTAA+AGG 0.527254 4:+46993532 MsG0480020722.01.T01:intron
GTTGACCAACCAATTGGGAC+AGG 0.528579 4:+46992548 MsG0480020722.01.T01:CDS
CATCCTCTAACATTGAGATA+AGG 0.530865 4:+46994652 MsG0480020722.01.T01:three_prime_UTR
GCTAGTTCACTGCTGCAACC+TGG 0.533445 4:-46992054 None:intergenic
GGATATTCCTGAACTTCTTG+AGG 0.534859 4:+46993905 MsG0480020722.01.T01:CDS
AAAAGCTGCACTTCAGATGT+TGG 0.535873 4:+46994544 MsG0480020722.01.T01:CDS
TAGGGATGCTTTAGGTGTTG+GGG 0.537401 4:+46993809 MsG0480020722.01.T01:CDS
TGTGATGTGTAACAGGTGAA+TGG 0.544527 4:+46994491 MsG0480020722.01.T01:intron
GAAGATCTCGGTCACCATGC+CGG 0.547294 4:+46991192 MsG0480020722.01.T01:CDS
CCAGTTGTGATATGGTTGAC+TGG 0.551036 4:+46992027 MsG0480020722.01.T01:CDS
ATTACTGGAGAATCATATGC+TGG 0.551568 4:+46992793 MsG0480020722.01.T01:CDS
GAATTGGCAGAGAGTAAAGG+TGG 0.560172 4:+46993535 MsG0480020722.01.T01:intron
TGTGTGGAATGATTATGGTT+GGG 0.561713 4:+46992125 MsG0480020722.01.T01:CDS
GACATAAGAAAGAAATGTCA+AGG 0.567445 4:+46993732 MsG0480020722.01.T01:CDS
TTGGATGAGAAACTTTGAAG+TGG 0.571105 4:+46993884 MsG0480020722.01.T01:CDS
CCAATAACTTGTCTCTTGTG+TGG 0.572712 4:+46992109 MsG0480020722.01.T01:CDS
CAGTCAACCATATCACAACT+GGG 0.574498 4:-46992026 None:intergenic
ATCTTCAATAGAAGGACCAT+CGG 0.575473 4:-46991175 None:intergenic
ATGTTGGCAAACTGGATGCA+TGG 0.577839 4:+46994560 MsG0480020722.01.T01:CDS
CTAACACCAGTTTCATCATG+TGG 0.588201 4:-46992602 None:intergenic
GATGCGAGAAGTTGCGTATG+AGG 0.589321 4:-46990971 None:intergenic
TAAAGTTCTTATATATGCTG+GGG 0.590091 4:+46993935 MsG0480020722.01.T01:CDS
GTGTAACAGGTGAATGGGGC+AGG 0.590576 4:+46994497 MsG0480020722.01.T01:intron
TACCTTGCGGATTTGGAACG+AGG 0.592095 4:-46991228 None:intergenic
TAAAACCTGTCCCAATTGGT+TGG 0.592919 4:-46992553 None:intergenic
TGATAACAAAATGATTACAA+AGG 0.594810 4:+46993251 MsG0480020722.01.T01:CDS
GGTCCTTCTATTGAAGATCT+CGG 0.595179 4:+46991180 MsG0480020722.01.T01:CDS
ACTTCATGTATAATGTTTGG+AGG 0.595677 4:+46994698 MsG0480020722.01.T01:three_prime_UTR
CAAGTTGATCCCAGATTGCG+AGG 0.597604 4:+46993293 MsG0480020722.01.T01:CDS
AGGGATTACTATAAACCTCA+AGG 0.608711 4:+46992870 MsG0480020722.01.T01:CDS
AATGGGTTCATGCAATGAAG+TGG 0.617006 4:+46994276 MsG0480020722.01.T01:CDS
TGTTGGCAAACTGGATGCAT+GGG 0.618606 4:+46994561 MsG0480020722.01.T01:CDS
TGAACCCTAGATGCAAGAGC+AGG 0.635146 4:-46992826 None:intergenic
CTTCATGTATAATGTTTGGA+GGG 0.639974 4:+46994699 MsG0480020722.01.T01:three_prime_UTR
AACGAACAATAACAAAAGAG+AGG 0.642414 4:-46990938 None:intergenic
TTCCTCGTTCCAAATCCGCA+AGG 0.666060 4:+46991226 MsG0480020722.01.T01:CDS
CTAACCTTTAGAAAAGAGAG+AGG 0.669936 4:-46994383 None:intergenic
GAAGCGAATAGTATCCGGCA+TGG 0.671731 4:-46991206 None:intergenic
GAATGATTATGGTTGGGACA+AGG 0.673972 4:+46992131 MsG0480020722.01.T01:CDS
ATGGGAACTTGAATAGGACA+AGG 0.685574 4:+46994579 MsG0480020722.01.T01:CDS
TGATGTGTAACAGGTGAATG+GGG 0.699009 4:+46994493 MsG0480020722.01.T01:intron
GTTGTGATATGGTTGACTGG+AGG 0.703410 4:+46992030 MsG0480020722.01.T01:CDS
CTTGCATCTAGGGTTCACCA+TGG 0.722490 4:+46992832 MsG0480020722.01.T01:CDS
AGTCAACCATATCACAACTG+GGG 0.752820 4:-46992025 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAACTAATTAATTAAATA+TGG - Chr4:46991560-46991579 None:intergenic 10.0%
!!! ATTTTATTTATAATAATCAC+AGG + Chr4:46992726-46992745 MsG0480020722.01.T01:intron 10.0%
!! ATTCAAAATATATTATTGTG+TGG + Chr4:46991436-46991455 MsG0480020722.01.T01:intron 15.0%
!! TGTCAATAATAAAACATATT+TGG - Chr4:46992478-46992497 None:intergenic 15.0%
!!! AAATACAAGATTTTTAATTG+TGG - Chr4:46991377-46991396 None:intergenic 15.0%
!!! AATTCAAATTGTTTTAGTAT+TGG + Chr4:46994001-46994020 MsG0480020722.01.T01:intron 15.0%
!!! AATTTGATTTTATTTGCAAT+TGG + Chr4:46993958-46993977 MsG0480020722.01.T01:CDS 15.0%
!!! CAAACTTATTTTATTTGAAT+TGG + Chr4:46993519-46993538 MsG0480020722.01.T01:intron 15.0%
!!! CTAAATATCTCTAAAATTTA+CGG - Chr4:46992354-46992373 None:intergenic 15.0%
!!! TAAAATTTGACTTAATTTTG+TGG + Chr4:46991915-46991934 MsG0480020722.01.T01:intron 15.0%
!!! TGTTACATAATTTTATTAGT+CGG + Chr4:46991698-46991717 MsG0480020722.01.T01:intron 15.0%
!!! TTCTTTTTTTATTGAATTTC+AGG + Chr4:46991959-46991978 MsG0480020722.01.T01:intron 15.0%
!! AAAACAATTTGAATTCAAGA+GGG - Chr4:46993996-46994015 None:intergenic 20.0%
!! ATACAAATTTAATTACCTTG+CGG - Chr4:46991244-46991263 None:intergenic 20.0%
!! ATTAAAGTTCTTATATATGC+TGG + Chr4:46993933-46993952 MsG0480020722.01.T01:CDS 20.0%
!! ATTATTGACATTATGACTAA+AGG + Chr4:46992488-46992507 MsG0480020722.01.T01:intron 20.0%
!! GTATATTATTCAGAACAAAT+CGG - Chr4:46991673-46991692 None:intergenic 20.0%
!! TAAAACAATTTGAATTCAAG+AGG - Chr4:46993997-46994016 None:intergenic 20.0%
!! TATGCTTCAAGATATTAATT+GGG - Chr4:46992673-46992692 None:intergenic 20.0%
!! TGAATCAAGAAAAAATTCTA+AGG + Chr4:46991999-46992018 MsG0480020722.01.T01:CDS 20.0%
!! TGATAACAAAATGATTACAA+AGG + Chr4:46993251-46993270 MsG0480020722.01.T01:CDS 20.0%
!! TTAAAGTTCTTATATATGCT+GGG + Chr4:46993934-46993953 MsG0480020722.01.T01:CDS 20.0%
!! TTATGCTTCAAGATATTAAT+TGG - Chr4:46992674-46992693 None:intergenic 20.0%
!! TTGACAATACTAGTAAAAAT+GGG - Chr4:46993367-46993386 None:intergenic 20.0%
!! TTGTCTATGATAATATAGTA+CGG + Chr4:46993454-46993473 MsG0480020722.01.T01:intron 20.0%
!! TTTCAAACCACTATTAATAT+TGG - Chr4:46991886-46991905 None:intergenic 20.0%
!! TTTGACAATACTAGTAAAAA+TGG - Chr4:46993368-46993387 None:intergenic 20.0%
!!! AAGTTATTGGCAATTTTAAA+AGG - Chr4:46992099-46992118 None:intergenic 20.0%
!!! TTTACAATGGTTTTAAATTG+CGG + Chr4:46992208-46992227 MsG0480020722.01.T01:intron 20.0%
!!! TTTGCTATTTTATTCTCATT+TGG + Chr4:46994240-46994259 MsG0480020722.01.T01:intron 20.0%
!!! TTTTTTATCAAGTAGTCTAA+TGG + Chr4:46994083-46994102 MsG0480020722.01.T01:intron 20.0%
! AAGAATGACTTCTATATTAC+TGG + Chr4:46992778-46992797 MsG0480020722.01.T01:CDS 25.0%
! AAGTCATTCTTAACAAACTT+AGG - Chr4:46992769-46992788 None:intergenic 25.0%
! AGTCATTCTTAACAAACTTA+GGG - Chr4:46992768-46992787 None:intergenic 25.0%
! ATAAGCTAAATTGATCAAGT+TGG - Chr4:46994043-46994062 None:intergenic 25.0%
! ATCTAATCATATCGTATATG+TGG - Chr4:46992698-46992717 None:intergenic 25.0%
! ATGACTTCATGTATAATGTT+TGG + Chr4:46994695-46994714 MsG0480020722.01.T01:three_prime_UTR 25.0%
! ATGGAAATAAAGGCAAAAAA+GGG + Chr4:46992851-46992870 MsG0480020722.01.T01:CDS 25.0%
! ATGTGACTATATAGATCTTA+AGG + Chr4:46991735-46991754 MsG0480020722.01.T01:intron 25.0%
! ATTATATTAACTGGATCCTT+TGG - Chr4:46991081-46991100 None:intergenic 25.0%
! CAACATTCCAATATTAATAG+TGG + Chr4:46991876-46991895 MsG0480020722.01.T01:intron 25.0%
! CACTATTAATATTGGAATGT+TGG - Chr4:46991878-46991897 None:intergenic 25.0%
! CCATTGTTTATGATTATGAT+AGG + Chr4:46993101-46993120 MsG0480020722.01.T01:intron 25.0%
! CCTATCATAATCATAAACAA+TGG - Chr4:46993104-46993123 None:intergenic 25.0%
! GAATCATTCAATCAAATTGA+AGG - Chr4:46991420-46991439 None:intergenic 25.0%
! GATCCAGTTAATATAATTCA+TGG + Chr4:46991084-46991103 MsG0480020722.01.T01:CDS 25.0%
! GTTGTTAAAAAAATGTCATG+TGG + Chr4:46991574-46991593 MsG0480020722.01.T01:intron 25.0%
! TAAAGTTCTTATATATGCTG+GGG + Chr4:46993935-46993954 MsG0480020722.01.T01:CDS 25.0%
! TCACCATGAATTATATTAAC+TGG - Chr4:46991090-46991109 None:intergenic 25.0%
! TCTAAACAAAAAGACAGTTA+GGG + Chr4:46993791-46993810 MsG0480020722.01.T01:CDS 25.0%
! TGAATTTGTGAAATGAAGTT+AGG + Chr4:46991485-46991504 MsG0480020722.01.T01:intron 25.0%
! TTACTTGTAGTACAATGTTA+TGG - Chr4:46991763-46991782 None:intergenic 25.0%
! TTCAATCAAATTGAAGGAAT+CGG - Chr4:46991414-46991433 None:intergenic 25.0%
! TTCTAAACAAAAAGACAGTT+AGG + Chr4:46993790-46993809 MsG0480020722.01.T01:CDS 25.0%
! TTGATTCCAATACAATTACA+GGG + Chr4:46993162-46993181 MsG0480020722.01.T01:intron 25.0%
! TTTGATTCCAATACAATTAC+AGG + Chr4:46993161-46993180 MsG0480020722.01.T01:intron 25.0%
!! AACCAAAAATTGAACTGTTT+TGG - Chr4:46994327-46994346 None:intergenic 25.0%
!! AATAATATTTTGTCCATTGC+CGG + Chr4:46993601-46993620 MsG0480020722.01.T01:CDS 25.0%
!! ATCCAAAACAGTTCAATTTT+TGG + Chr4:46994322-46994341 MsG0480020722.01.T01:CDS 25.0%
!!! ACAGTTCAATTTTTGGTTAA+TGG + Chr4:46994329-46994348 MsG0480020722.01.T01:CDS 25.0%
!!! AGGTGTTTTTTTCATTTTGT+AGG + Chr4:46992508-46992527 MsG0480020722.01.T01:intron 25.0%
!!! ATATCTCTAAAATTTACGGT+CGG - Chr4:46992350-46992369 None:intergenic 25.0%
AACATTTGATGTCTCTATTG+CGG + Chr4:46993004-46993023 MsG0480020722.01.T01:intron 30.0%
AACCCACTTATTAACCTTAA+AGG - Chr4:46994119-46994138 None:intergenic 30.0%
AACGAACAATAACAAAAGAG+AGG - Chr4:46990941-46990960 None:intergenic 30.0%
ACTTCATGTATAATGTTTGG+AGG + Chr4:46994698-46994717 MsG0480020722.01.T01:three_prime_UTR 30.0%
AGTACTTACATTAACGTTAC+CGG - Chr4:46993623-46993642 None:intergenic 30.0%
ATAATGCAATGTTGCAAGAT+TGG + Chr4:46993865-46993884 MsG0480020722.01.T01:CDS 30.0%
ATAGTACAATTGCACAATTG+CGG + Chr4:46991307-46991326 MsG0480020722.01.T01:intron 30.0%
ATATTATTGTGTGGAGTCAA+AGG + Chr4:46991445-46991464 MsG0480020722.01.T01:intron 30.0%
ATGTTATGTATCGTCAATCA+CGG - Chr4:46992989-46993008 None:intergenic 30.0%
ATTTAATTACCTTGCGGATT+TGG - Chr4:46991238-46991257 None:intergenic 30.0%
CATGGAAATAAAGGCAAAAA+AGG + Chr4:46992850-46992869 MsG0480020722.01.T01:CDS 30.0%
CTTCATGTATAATGTTTGGA+GGG + Chr4:46994699-46994718 MsG0480020722.01.T01:three_prime_UTR 30.0%
GACATAAGAAAGAAATGTCA+AGG + Chr4:46993732-46993751 MsG0480020722.01.T01:CDS 30.0%
GACTTTATCAATACTGCATT+TGG + Chr4:46993026-46993045 MsG0480020722.01.T01:intron 30.0%
GTTTGCTCTATTTATCAACT+TGG - Chr4:46992417-46992436 None:intergenic 30.0%
TATCTGTTCACATTGTTGTA+AGG - Chr4:46993578-46993597 None:intergenic 30.0%
TCACAAATCGCAAAAAATAG+CGG - Chr4:46993495-46993514 None:intergenic 30.0%
TCATTGTCAATCAATGTCTT+TGG - Chr4:46992439-46992458 None:intergenic 30.0%
TGATTTATGTGATGTGTAAC+AGG + Chr4:46994484-46994503 MsG0480020722.01.T01:intron 30.0%
TGTGTCATATGAGTTTACAA+TGG + Chr4:46992195-46992214 MsG0480020722.01.T01:intron 30.0%
TTGGTTAATGGTAAAAAAGC+AGG + Chr4:46994341-46994360 MsG0480020722.01.T01:CDS 30.0%
TTGTTCTGCAATACACTATT+TGG + Chr4:46993422-46993441 MsG0480020722.01.T01:intron 30.0%
! AAGCTTTAACTTATTGCCAA+AGG + Chr4:46991062-46991081 MsG0480020722.01.T01:CDS 30.0%
! ATTTTATTCTCATTTGGCCA+GGG + Chr4:46994246-46994265 MsG0480020722.01.T01:intron 30.0%
! GACACTGTTGATTAAACTTT+AGG + Chr4:46994455-46994474 MsG0480020722.01.T01:intron 30.0%
! TATTTTATTCTCATTTGGCC+AGG + Chr4:46994245-46994264 MsG0480020722.01.T01:intron 30.0%
! TTTTTGTTGACCAACCAATT+GGG + Chr4:46992543-46992562 MsG0480020722.01.T01:CDS 30.0%
!! CACCTTTAAGGTTAATAAGT+GGG + Chr4:46994114-46994133 MsG0480020722.01.T01:intron 30.0%
!! GATTTTATTTGCAATTGGCT+TGG + Chr4:46993963-46993982 MsG0480020722.01.T01:CDS 30.0%
!! TCACCTTTAAGGTTAATAAG+TGG + Chr4:46994113-46994132 MsG0480020722.01.T01:intron 30.0%
!!! CTAGCTTTGTTTTATGAGAA+TGG + Chr4:46992072-46992091 MsG0480020722.01.T01:CDS 30.0%
!!! CTTTTTTGCCTTTATTTCCA+TGG - Chr4:46992852-46992871 None:intergenic 30.0%
AACAATGCATTGTTACATGC+AGG - Chr4:46994163-46994182 None:intergenic 35.0%
ACAATGCATTGTTACATGCA+GGG - Chr4:46994162-46994181 None:intergenic 35.0%
ACTAGTATTGTCAAATAGCG+CGG + Chr4:46993373-46993392 MsG0480020722.01.T01:intron 35.0%
AGGGATTACTATAAACCTCA+AGG + Chr4:46992870-46992889 MsG0480020722.01.T01:CDS 35.0%
ATCTTCAATAGAAGGACCAT+CGG - Chr4:46991178-46991197 None:intergenic 35.0%
ATGGCTAGAATTCACCTTTA+AGG + Chr4:46994102-46994121 MsG0480020722.01.T01:intron 35.0%
ATTACTGGAGAATCATATGC+TGG + Chr4:46992793-46992812 MsG0480020722.01.T01:CDS 35.0%
CAACATCACAACTGAAATTG+TGG - Chr4:46992303-46992322 None:intergenic 35.0%
CATCCTCTAACATTGAGATA+AGG + Chr4:46994652-46994671 MsG0480020722.01.T01:three_prime_UTR 35.0%
GATATTCCACATGATGAAAC+TGG + Chr4:46992596-46992615 MsG0480020722.01.T01:CDS 35.0%
GATCCTTATCTCAATGTTAG+AGG - Chr4:46994658-46994677 None:intergenic 35.0%
GCAAAACCCTGTAATTGTAT+TGG - Chr4:46993171-46993190 None:intergenic 35.0%
GCAGGATTGTTGAATAGTTA+TGG + Chr4:46994359-46994378 MsG0480020722.01.T01:CDS 35.0%
TAGGACATTGTATAACCTTG+AGG - Chr4:46992888-46992907 None:intergenic 35.0%
TCTCTTGTGTGGAATGATTA+TGG + Chr4:46992120-46992139 MsG0480020722.01.T01:CDS 35.0%
TGTGTGGAATGATTATGGTT+GGG + Chr4:46992125-46992144 MsG0480020722.01.T01:CDS 35.0%
TTGTGTGGAATGATTATGGT+TGG + Chr4:46992124-46992143 MsG0480020722.01.T01:CDS 35.0%
TTTGAATTGGCAGAGAGTAA+AGG + Chr4:46993532-46993551 MsG0480020722.01.T01:intron 35.0%
! CTAACCTTTAGAAAAGAGAG+AGG - Chr4:46994386-46994405 None:intergenic 35.0%
! CTTTTTGTTGACCAACCAAT+TGG + Chr4:46992542-46992561 MsG0480020722.01.T01:CDS 35.0%
! GGTGTGATAAGAGTGTATAA+TGG - Chr4:46993346-46993365 None:intergenic 35.0%
! TCGAACATAAGCATTGCTTT+CGG - Chr4:46991623-46991642 None:intergenic 35.0%
! TCTATTGATCATTTTGTCCC+TGG + Chr4:46991114-46991133 MsG0480020722.01.T01:CDS 35.0%
! TCTTGTACCGCAAGTTTTTA+TGG - Chr4:46993322-46993341 None:intergenic 35.0%
! TGATTTGTATGACTTCTTGC+AGG + Chr4:46992628-46992647 MsG0480020722.01.T01:CDS 35.0%
! TTATAAGCTTTTCAGCTCGT+TGG - Chr4:46991041-46991060 None:intergenic 35.0%
! TTGGATGAGAAACTTTGAAG+TGG + Chr4:46993884-46993903 MsG0480020722.01.T01:CDS 35.0%
!! CAATTACAGGGTTTTGCTAT+TGG + Chr4:46993174-46993193 MsG0480020722.01.T01:intron 35.0%
!!! AGGGTTTTGCTATTGGTAAT+GGG + Chr4:46993181-46993200 MsG0480020722.01.T01:intron 35.0%
!!! CGTTGGTTTGGTGAAAATTT+TGG - Chr4:46991024-46991043 None:intergenic 35.0%
!!! GGTGAAAATTTTGGTGTTGA+TGG - Chr4:46991015-46991034 None:intergenic 35.0%
AAAAGCTGCACTTCAGATGT+TGG + Chr4:46994544-46994563 MsG0480020722.01.T01:CDS 40.0%
AAGACAGTTAGGGATGCTTT+AGG + Chr4:46993801-46993820 MsG0480020722.01.T01:CDS 40.0%
AGGGTTCACCATGGAAATAA+AGG + Chr4:46992841-46992860 MsG0480020722.01.T01:CDS 40.0%
AGTCAACCATATCACAACTG+GGG - Chr4:46992028-46992047 None:intergenic 40.0%
ATGGGAACTTGAATAGGACA+AGG + Chr4:46994579-46994598 MsG0480020722.01.T01:CDS 40.0%
ATTCCATCCTCAAGAAGTTC+AGG - Chr4:46993915-46993934 None:intergenic 40.0%
ATTCCTGAACTTCTTGAGGA+TGG + Chr4:46993909-46993928 MsG0480020722.01.T01:CDS 40.0%
CAATGCATTGTTACATGCAG+GGG - Chr4:46994161-46994180 None:intergenic 40.0%
CAGTCAACCATATCACAACT+GGG - Chr4:46992029-46992048 None:intergenic 40.0%
CCACACAAGAGACAAGTTAT+TGG - Chr4:46992112-46992131 None:intergenic 40.0%
CTAACACCAGTTTCATCATG+TGG - Chr4:46992605-46992624 None:intergenic 40.0%
GAATGATTATGGTTGGGACA+AGG + Chr4:46992131-46992150 MsG0480020722.01.T01:CDS 40.0%
GAGGTTGCCATAAAAACTTG+CGG + Chr4:46993312-46993331 MsG0480020722.01.T01:CDS 40.0%
GGATATTCCTGAACTTCTTG+AGG + Chr4:46993905-46993924 MsG0480020722.01.T01:CDS 40.0%
GGTCCTTCTATTGAAGATCT+CGG + Chr4:46991180-46991199 MsG0480020722.01.T01:CDS 40.0%
GTGATGTGTAACAGGTGAAT+GGG + Chr4:46994492-46994511 MsG0480020722.01.T01:intron 40.0%
TAAAACCTGTCCCAATTGGT+TGG - Chr4:46992556-46992575 None:intergenic 40.0%
TACATTAACGTTACCGGCAA+TGG - Chr4:46993617-46993636 None:intergenic 40.0%
TAGCTAAAACCTGTCCCAAT+TGG - Chr4:46992560-46992579 None:intergenic 40.0%
TGACCGAGATCTTCAATAGA+AGG - Chr4:46991186-46991205 None:intergenic 40.0%
TGATGTGTAACAGGTGAATG+GGG + Chr4:46994493-46994512 MsG0480020722.01.T01:intron 40.0%
TGTGATGTGTAACAGGTGAA+TGG + Chr4:46994491-46994510 MsG0480020722.01.T01:intron 40.0%
TTCTTCGAGCATAGTTCAGT+TGG - Chr4:46994190-46994209 None:intergenic 40.0%
TTGGCCAGGGAATTCAAAAT+GGG + Chr4:46994259-46994278 MsG0480020722.01.T01:intron 40.0%
TTTGGCCAGGGAATTCAAAA+TGG + Chr4:46994258-46994277 MsG0480020722.01.T01:intron 40.0%
! AATGGGTTCATGCAATGAAG+TGG + Chr4:46994276-46994295 MsG0480020722.01.T01:CDS 40.0%
! ATGCAAACTGAGAGTATGCT+TGG - Chr4:46993230-46993249 None:intergenic 40.0%
! CCAATAACTTGTCTCTTGTG+TGG + Chr4:46992109-46992128 MsG0480020722.01.T01:CDS 40.0%
! TATGCTTGGTACTGAATTGC+TGG - Chr4:46993216-46993235 None:intergenic 40.0%
! TCTTCTCGACGATTTTTCCA+GGG - Chr4:46991134-46991153 None:intergenic 40.0%
! TGAACCCATTTTGAATTCCC+TGG - Chr4:46994266-46994285 None:intergenic 40.0%
! TGGACCTCTCTCTTTTCTAA+AGG + Chr4:46994379-46994398 MsG0480020722.01.T01:CDS 40.0%
! TTAGGGATGCTTTAGGTGTT+GGG + Chr4:46993808-46993827 MsG0480020722.01.T01:CDS 40.0%
! TTCTTCTCGACGATTTTTCC+AGG - Chr4:46991135-46991154 None:intergenic 40.0%
! TTGGTACTGAATTGCTGGAT+TGG - Chr4:46993211-46993230 None:intergenic 40.0%
!! AACATCTGAAGTGCAGCTTT+TGG - Chr4:46994545-46994564 None:intergenic 40.0%
!! AGGTTAATAAGTGGGTTGTC+CGG + Chr4:46994122-46994141 MsG0480020722.01.T01:intron 40.0%
!! CAGCTTTTGGTTGATCCATA+GGG - Chr4:46994532-46994551 None:intergenic 40.0%
!!! CAGGGTTTTGCTATTGGTAA+TGG + Chr4:46993180-46993199 MsG0480020722.01.T01:intron 40.0%
ACGAGGAAGCGAATAGTATC+CGG - Chr4:46991214-46991233 None:intergenic 45.0%
ATGTTCCTGCTCTTGCATCT+AGG + Chr4:46992821-46992840 MsG0480020722.01.T01:CDS 45.0%
ATGTTGGCAAACTGGATGCA+TGG + Chr4:46994560-46994579 MsG0480020722.01.T01:CDS 45.0%
CACTTCAGATGTTGGCAAAC+TGG + Chr4:46994552-46994571 MsG0480020722.01.T01:CDS 45.0%
CATTTGGACCTCGACAAATG+AGG + Chr4:46993042-46993061 MsG0480020722.01.T01:intron 45.0%
CCAGTCAACCATATCACAAC+TGG - Chr4:46992030-46992049 None:intergenic 45.0%
CCAGTTGTGATATGGTTGAC+TGG + Chr4:46992027-46992046 MsG0480020722.01.T01:CDS 45.0%
GAATTGGCAGAGAGTAAAGG+TGG + Chr4:46993535-46993554 MsG0480020722.01.T01:intron 45.0%
GCTTATGTTCGATGAGATCC+AGG + Chr4:46991631-46991650 MsG0480020722.01.T01:intron 45.0%
GGATGCATGGGAACTTGAAT+AGG + Chr4:46994573-46994592 MsG0480020722.01.T01:CDS 45.0%
GTTACGATCCTCATTTGTCG+AGG - Chr4:46993053-46993072 None:intergenic 45.0%
GTTCATGCAATGAAGTGGTC+AGG + Chr4:46994281-46994300 MsG0480020722.01.T01:CDS 45.0%
GTTGTGATATGGTTGACTGG+AGG + Chr4:46992030-46992049 MsG0480020722.01.T01:CDS 45.0%
TCGATGAGATCCAGGTCAAA+AGG + Chr4:46991639-46991658 MsG0480020722.01.T01:intron 45.0%
TGTTCCTGCTCTTGCATCTA+GGG + Chr4:46992822-46992841 MsG0480020722.01.T01:CDS 45.0%
TGTTGGCAAACTGGATGCAT+GGG + Chr4:46994561-46994580 MsG0480020722.01.T01:CDS 45.0%
TTATGGCAACCTCGCAATCT+GGG - Chr4:46993305-46993324 None:intergenic 45.0%
TTTATGGCAACCTCGCAATC+TGG - Chr4:46993306-46993325 None:intergenic 45.0%
! GGTACAACAACCTTTTGACC+TGG - Chr4:46991652-46991671 None:intergenic 45.0%
! GTTAGGGATGCTTTAGGTGT+TGG + Chr4:46993807-46993826 MsG0480020722.01.T01:CDS 45.0%
! TAGGGATGCTTTAGGTGTTG+GGG + Chr4:46993809-46993828 MsG0480020722.01.T01:CDS 45.0%
!! AGCTTTTCAGCTCGTTGGTT+TGG - Chr4:46991036-46991055 None:intergenic 45.0%
!! GCAGCTTTTGGTTGATCCAT+AGG - Chr4:46994533-46994552 None:intergenic 45.0%
!! GGTTAATAAGTGGGTTGTCC+GGG + Chr4:46994123-46994142 MsG0480020722.01.T01:intron 45.0%
!! GTTAATAAGTGGGTTGTCCG+GGG + Chr4:46994124-46994143 MsG0480020722.01.T01:intron 45.0%
!! TCGTTTTTCAGCGATTCCGA+TGG + Chr4:46991159-46991178 MsG0480020722.01.T01:CDS 45.0%
!! ATTCATAATATAAAATTAAT+AGG - Chr4:46992907-46992926 None:intergenic 5.0%
!!! AAGATAAAATAAATTTTTTT+GGG - Chr4:46993658-46993677 None:intergenic 5.0%
!!! TAAGATAAAATAAATTTTTT+TGG - Chr4:46993659-46993678 None:intergenic 5.0%
AGGATGCCCCAGTTGTGATA+TGG + Chr4:46992019-46992038 MsG0480020722.01.T01:CDS 50.0%
ATATGGTTGACTGGAGGTCC+AGG + Chr4:46992036-46992055 MsG0480020722.01.T01:CDS 50.0%
GAAGCGAATAGTATCCGGCA+TGG - Chr4:46991209-46991228 None:intergenic 50.0%
GATGCGAGAAGTTGCGTATG+AGG - Chr4:46990974-46990993 None:intergenic 50.0%
GTTGACCAACCAATTGGGAC+AGG + Chr4:46992548-46992567 MsG0480020722.01.T01:CDS 50.0%
TGAACCCTAGATGCAAGAGC+AGG - Chr4:46992829-46992848 None:intergenic 50.0%
TTCCTCGTTCCAAATCCGCA+AGG + Chr4:46991226-46991245 MsG0480020722.01.T01:CDS 50.0%
! CTTGCATCTAGGGTTCACCA+TGG + Chr4:46992832-46992851 MsG0480020722.01.T01:CDS 50.0%
! TACCTTGCGGATTTGGAACG+AGG - Chr4:46991231-46991250 None:intergenic 50.0%
!! CAAGTTGATCCCAGATTGCG+AGG + Chr4:46993293-46993312 MsG0480020722.01.T01:CDS 50.0%
CATTGTTACATGCAGGGGCC+GGG - Chr4:46994156-46994175 None:intergenic 55.0%
GAAGATCTCGGTCACCATGC+CGG + Chr4:46991192-46991211 MsG0480020722.01.T01:CDS 55.0%
GCATTGTTACATGCAGGGGC+CGG - Chr4:46994157-46994176 None:intergenic 55.0%
GCTAGTTCACTGCTGCAACC+TGG - Chr4:46992057-46992076 None:intergenic 55.0%
GGCAGGACATATGGTCCCTA+TGG + Chr4:46994514-46994533 MsG0480020722.01.T01:CDS 55.0%
GGTGAATGGGGCAGGACATA+TGG + Chr4:46994505-46994524 MsG0480020722.01.T01:intron 55.0%
GTGTAACAGGTGAATGGGGC+AGG + Chr4:46994497-46994516 MsG0480020722.01.T01:intron 55.0%
GGTTGTCCGGGGTTCGAACC+CGG + Chr4:46994135-46994154 MsG0480020722.01.T01:intron 65.0%
CAGGGGCCGGGTTCGAACCC+CGG - Chr4:46994144-46994163 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr4 gene 46990913 46994749 46990913 ID=MsG0480020722.01;Name=MsG0480020722.01
Chr4 mRNA 46990913 46994749 46990913 ID=MsG0480020722.01.T01;Parent=MsG0480020722.01;Name=MsG0480020722.01.T01;_AED=0.43;_eAED=0.43;_QI=9|1|1|1|1|1|9|142|498
Chr4 exon 46990913 46991247 46990913 ID=MsG0480020722.01.T01:exon:7285;Parent=MsG0480020722.01.T01
Chr4 exon 46991981 46992152 46991981 ID=MsG0480020722.01.T01:exon:7286;Parent=MsG0480020722.01.T01
Chr4 exon 46992530 46992649 46992530 ID=MsG0480020722.01.T01:exon:7287;Parent=MsG0480020722.01.T01
Chr4 exon 46992748 46992891 46992748 ID=MsG0480020722.01.T01:exon:7288;Parent=MsG0480020722.01.T01
Chr4 exon 46993183 46993333 46993183 ID=MsG0480020722.01.T01:exon:7289;Parent=MsG0480020722.01.T01
Chr4 exon 46993545 46993633 46993545 ID=MsG0480020722.01.T01:exon:7290;Parent=MsG0480020722.01.T01
Chr4 exon 46993726 46993984 46993726 ID=MsG0480020722.01.T01:exon:7291;Parent=MsG0480020722.01.T01
Chr4 exon 46994267 46994400 46994267 ID=MsG0480020722.01.T01:exon:7292;Parent=MsG0480020722.01.T01
Chr4 exon 46994506 46994749 46994506 ID=MsG0480020722.01.T01:exon:7293;Parent=MsG0480020722.01.T01
Chr4 five_prime_UTR 46990913 46990921 46990913 ID=MsG0480020722.01.T01:five_prime_utr;Parent=MsG0480020722.01.T01
Chr4 CDS 46990922 46991247 46990922 ID=MsG0480020722.01.T01:cds;Parent=MsG0480020722.01.T01
Chr4 CDS 46991981 46992152 46991981 ID=MsG0480020722.01.T01:cds;Parent=MsG0480020722.01.T01
Chr4 CDS 46992530 46992649 46992530 ID=MsG0480020722.01.T01:cds;Parent=MsG0480020722.01.T01
Chr4 CDS 46992748 46992891 46992748 ID=MsG0480020722.01.T01:cds;Parent=MsG0480020722.01.T01
Chr4 CDS 46993183 46993333 46993183 ID=MsG0480020722.01.T01:cds;Parent=MsG0480020722.01.T01
Chr4 CDS 46993545 46993633 46993545 ID=MsG0480020722.01.T01:cds;Parent=MsG0480020722.01.T01
Chr4 CDS 46993726 46993984 46993726 ID=MsG0480020722.01.T01:cds;Parent=MsG0480020722.01.T01
Chr4 CDS 46994267 46994400 46994267 ID=MsG0480020722.01.T01:cds;Parent=MsG0480020722.01.T01
Chr4 CDS 46994506 46994607 46994506 ID=MsG0480020722.01.T01:cds;Parent=MsG0480020722.01.T01
Chr4 three_prime_UTR 46994608 46994749 46994608 ID=MsG0480020722.01.T01:three_prime_utr;Parent=MsG0480020722.01.T01
Gene Sequence

>MsG0480020722.01.T01

ATGGGATTCTCTAAAACCTCTCTTTTGTTATTGTTCGTTTTGTTTTCTTCCTCATACGCAACTTCTCGCATCACACATCATAGAAGTTTTCCATCAACACCAAAATTTTCACCAAACCAACGAGCTGAAAAGCTTATAAAAAGCTTTAACTTATTGCCAAAGGATCCAGTTAATATAATTCATGGTGATCACTCTATTGATCATTTTGTCCCTGGAAAAATCGTCGAGAAGAAGTTCTCGTTTTTCAGCGATTCCGATGGTCCTTCTATTGAAGATCTCGGTCACCATGCCGGATACTATTCGCTTCCTCGTTCCAAATCCGCAAGGATGTTCTATTTTTTCTTTGAATCAAGAAAAAATTCTAAGGATGCCCCAGTTGTGATATGGTTGACTGGAGGTCCAGGTTGCAGCAGTGAACTAGCTTTGTTTTATGAGAATGGTCCTTTTAAAATTGCCAATAACTTGTCTCTTGTGTGGAATGATTATGGTTGGGACAAGGCATCAAATATTCTTTTTGTTGACCAACCAATTGGGACAGGTTTTAGCTACACGTCTAATGAAGATGATATTCCACATGATGAAACTGGTGTTAGCAATGATTTGTATGACTTCTTGCAGGAGTTTTTCAAGCAGCACCCTAAGTTTGTTAAGAATGACTTCTATATTACTGGAGAATCATATGCTGGACACTATGTTCCTGCTCTTGCATCTAGGGTTCACCATGGAAATAAAGGCAAAAAAGGGATTACTATAAACCTCAAGGGTTTTGCTATTGGTAATGGGTTGACCAATCCAGCAATTCAGTACCAAGCATACTCTCAGTTTGCATTTGATAACAAAATGATTACAAAGGAAGATCAAACTGATATCAACAAGTTGATCCCAGATTGCGAGGTTGCCATAAAAACTTGCGAGAGTAAAGGTGGAGAAAGTTGCTATTCAGCCTTACAACAATGTGAACAGATAATCAATAATATTTTGTCCATTGCCGGTAACGTTAATTACTATGACATAAGAAAGAAATGTCAAGGATCATTGTGTTATGACTTCTCAAATTTAGAGAAACTTCTAAACAAAAAGACAGTTAGGGATGCTTTAGGTGTTGGGGACATAGATTTTGTTTCATGTAGCAAAGAAGTGTATAATGCAATGTTGCAAGATTGGATGAGAAACTTTGAAGTGGATATTCCTGAACTTCTTGAGGATGGAATTAAAGTTCTTATATATGCTGGGGAATTTGATTTTATTTGCAATTGGCTTGGGAATTCAAAATGGGTTCATGCAATGAAGTGGTCAGGTCAAAAGAAATTTGCAGCATCCAAAACAGTTCAATTTTTGGTTAATGGTAAAAAAGCAGGATTGTTGAATAGTTATGGACCTCTCTCTTTTCTAAAGGTGAATGGGGCAGGACATATGGTCCCTATGGATCAACCAAAAGCTGCACTTCAGATGTTGGCAAACTGGATGCATGGGAACTTGAATAGGACAAGGATTTGA

Protein sequence

>MsG0480020722.01.T01

MGFSKTSLLLLFVLFSSSYATSRITHHRSFPSTPKFSPNQRAEKLIKSFNLLPKDPVNIIHGDHSIDHFVPGKIVEKKFSFFSDSDGPSIEDLGHHAGYYSLPRSKSARMFYFFFESRKNSKDAPVVIWLTGGPGCSSELALFYENGPFKIANNLSLVWNDYGWDKASNILFVDQPIGTGFSYTSNEDDIPHDETGVSNDLYDFLQEFFKQHPKFVKNDFYITGESYAGHYVPALASRVHHGNKGKKGITINLKGFAIGNGLTNPAIQYQAYSQFAFDNKMITKEDQTDINKLIPDCEVAIKTCESKGGESCYSALQQCEQIINNILSIAGNVNYYDIRKKCQGSLCYDFSNLEKLLNKKTVRDALGVGDIDFVSCSKEVYNAMLQDWMRNFEVDIPELLEDGIKVLIYAGEFDFICNWLGNSKWVHAMKWSGQKKFAASKTVQFLVNGKKAGLLNSYGPLSFLKVNGAGHMVPMDQPKAALQMLANWMHGNLNRTRI*