AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780038307.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038307.01.T01 MTR_7g050980 95.495 555 24 1 1 554 1 555 0.0 1100
MsG0780038307.01.T01 MTR_7g050870 83.423 555 90 2 1 554 1 554 0.0 944
MsG0780038307.01.T01 MTR_7g050950 79.099 555 113 3 1 554 1 553 0.0 896
MsG0780038307.01.T01 MTR_1g008140 43.881 572 275 13 22 554 43 607 1.10e-158 466
MsG0780038307.01.T01 MTR_7g108905 45.155 547 274 10 22 550 14 552 6.61e-156 457
MsG0780038307.01.T01 MTR_4g087980 49.441 447 205 7 117 554 82 516 3.90e-150 441
MsG0780038307.01.T01 MTR_2g044880 51.810 442 197 9 121 554 92 525 3.57e-149 439
MsG0780038307.01.T01 MTR_8g023310 45.057 526 255 11 55 554 72 589 1.29e-148 440
MsG0780038307.01.T01 MTR_3g091380 44.181 507 227 9 85 554 110 597 3.38e-147 436
MsG0780038307.01.T01 MTR_4g025690 46.875 512 234 14 53 554 30 513 1.92e-143 424
MsG0780038307.01.T01 MTR_8g104655 42.626 556 264 11 24 554 16 541 7.07e-141 418
MsG0780038307.01.T01 MTR_4g025730 44.508 528 257 15 34 554 11 509 1.13e-140 417
MsG0780038307.01.T01 MTR_4g087970 47.964 442 215 7 121 554 83 517 4.87e-140 415
MsG0780038307.01.T01 MTR_3g008640 50.000 440 197 10 124 554 102 527 1.22e-137 409
MsG0780038307.01.T01 MTR_3g033690 49.333 450 205 11 114 554 91 526 3.39e-136 406
MsG0780038307.01.T01 MTR_8g104645 56.471 340 142 3 219 554 35 372 3.43e-136 400
MsG0780038307.01.T01 MTR_7g053360 49.658 439 202 9 123 554 101 527 5.40e-136 405
MsG0780038307.01.T01 MTR_3g008700 49.318 440 200 10 124 554 102 527 9.68e-136 405
MsG0780038307.01.T01 MTR_3g008720 49.545 440 199 10 124 554 102 527 1.20e-135 404
MsG0780038307.01.T01 MTR_4g025670 47.416 445 205 7 120 554 64 489 9.23e-134 398
MsG0780038307.01.T01 MTR_4g035980 47.489 438 217 6 124 554 108 539 1.56e-133 399
MsG0780038307.01.T01 MTR_7g112580 45.714 455 216 8 117 554 102 542 1.60e-133 399
MsG0780038307.01.T01 MTR_1g054880 45.877 473 207 12 121 554 96 558 3.57e-131 394
MsG0780038307.01.T01 MTR_7g108900 42.885 520 256 11 72 554 45 560 4.29e-128 386
MsG0780038307.01.T01 MTR_1g083520 42.486 539 273 15 33 554 10 528 2.47e-125 378
MsG0780038307.01.T01 MTR_7g108875 45.182 467 220 10 121 554 101 564 2.62e-124 377
MsG0780038307.01.T01 MTR_3g010780 39.006 523 289 11 47 554 67 574 5.16e-124 376
MsG0780038307.01.T01 MTR_8g042900 40.727 523 282 11 47 554 72 581 9.47e-124 375
MsG0780038307.01.T01 MTR_4g124520 44.608 408 211 5 153 554 123 521 1.11e-123 374
MsG0780038307.01.T01 MTR_1g088020 44.093 474 216 11 121 554 91 555 3.63e-123 373
MsG0780038307.01.T01 MTR_2g044810 39.368 475 268 7 85 554 75 534 6.51e-121 367
MsG0780038307.01.T01 MTR_8g023150 41.524 525 263 11 49 550 75 578 6.41e-120 366
MsG0780038307.01.T01 MTR_7g108890 43.552 473 219 11 121 554 99 562 2.11e-118 361
MsG0780038307.01.T01 MTR_4g124550 38.837 533 287 13 46 554 76 593 3.65e-118 362
MsG0780038307.01.T01 MTR_1g088225 43.671 474 216 12 121 554 91 553 8.98e-118 359
MsG0780038307.01.T01 MTR_8g104580 38.309 556 255 13 24 554 8 500 3.30e-113 346
MsG0780038307.01.T01 MTR_8g042910 42.827 481 223 10 118 554 140 612 4.29e-112 347
MsG0780038307.01.T01 MTR_1g086210 39.535 473 250 7 114 554 101 569 1.67e-111 344
MsG0780038307.01.T01 MTR_1g083510 38.525 488 264 9 99 553 98 582 4.73e-111 343
MsG0780038307.01.T01 MTR_1g083470 40.576 451 249 10 116 550 119 566 5.32e-111 343
MsG0780038307.01.T01 MTR_1g083500 40.576 451 249 10 116 550 119 566 5.32e-111 343
MsG0780038307.01.T01 MTR_1g086190 36.842 532 298 9 48 554 45 563 3.44e-110 340
MsG0780038307.01.T01 MTR_3g010770 41.031 485 229 10 118 554 100 575 5.70e-109 337
MsG0780038307.01.T01 MTR_7g112590 35.526 532 302 10 50 553 64 582 1.62e-106 332
MsG0780038307.01.T01 MTR_0458s0030 52.824 301 133 5 255 554 22 314 1.37e-105 320
MsG0780038307.01.T01 MTR_1g088040 52.824 301 133 5 255 554 22 314 1.37e-105 320
MsG0780038307.01.T01 MTR_4g005170 39.823 452 251 9 116 550 124 571 2.37e-105 330
MsG0780038307.01.T01 MTR_1g083490 39.159 452 254 9 116 550 124 571 1.64e-104 326
MsG0780038307.01.T01 MTR_4g005180 39.246 451 253 9 117 550 107 553 4.80e-103 322
MsG0780038307.01.T01 MTR_2g044660 36.332 567 277 17 55 554 83 632 1.50e-102 322
MsG0780038307.01.T01 MTR_7g110490 38.596 456 236 8 119 538 106 553 1.35e-99 313
MsG0780038307.01.T01 MTR_7g110510 38.596 456 236 8 119 538 106 553 1.35e-99 313
MsG0780038307.01.T01 MTR_7g110440 34.594 529 290 11 53 544 44 553 9.09e-98 308
MsG0780038307.01.T01 MTR_2g436040 33.024 539 335 11 27 551 17 543 1.38e-96 306
MsG0780038307.01.T01 MTR_4g120290 37.527 461 250 11 121 553 121 571 8.05e-96 303
MsG0780038307.01.T01 MTR_4g120280 35.294 510 285 12 76 553 75 571 5.52e-94 299
MsG0780038307.01.T01 MTR_0618s0020 58.696 230 93 1 325 554 1 228 6.71e-94 286
MsG0780038307.01.T01 MTR_2g436050 33.813 556 303 14 56 553 15 563 1.02e-90 290
MsG0780038307.01.T01 MTR_3g095920 35.000 580 308 19 19 553 8 563 4.24e-90 288
MsG0780038307.01.T01 MTR_8g093460 34.398 532 288 16 55 553 47 550 4.25e-90 288
MsG0780038307.01.T01 MTR_7g110560 34.581 454 271 8 119 554 104 549 3.55e-89 285
MsG0780038307.01.T01 MTR_7g110420 35.546 467 247 10 119 543 106 560 1.16e-87 282
MsG0780038307.01.T01 MTR_2g044810 48.627 255 128 2 300 554 214 465 1.55e-85 273
MsG0780038307.01.T01 MTR_5g083620 38.824 340 197 5 220 554 23 356 5.73e-81 258
MsG0780038307.01.T01 MTR_7g110430 32.325 529 268 12 53 544 44 519 2.38e-79 259
MsG0780038307.01.T01 MTR_8g088610 38.576 337 199 5 217 551 43 373 3.59e-78 251
MsG0780038307.01.T01 MTR_7g107180 39.873 316 176 4 240 554 5 307 4.00e-73 236
MsG0780038307.01.T01 MTR_0458s0010 35.908 479 211 17 121 554 91 518 5.31e-73 242
MsG0780038307.01.T01 MTR_2g105560 39.365 315 175 4 241 554 40 339 7.66e-72 233
MsG0780038307.01.T01 MTR_7g111560 31.467 518 312 17 55 554 64 556 3.71e-62 214
MsG0780038307.01.T01 MTR_2g039530 37.377 305 175 5 217 520 29 318 3.03e-57 195
MsG0780038307.01.T01 MTR_6g088810 35.738 305 168 7 250 543 90 377 5.63e-48 171
MsG0780038307.01.T01 MTR_6g012800 31.699 306 183 7 242 537 6 295 2.52e-47 168
MsG0780038307.01.T01 MTR_6g024165 35.144 313 173 10 242 543 41 334 8.00e-47 167
MsG0780038307.01.T01 MTR_1g086540 32.698 315 185 7 239 543 47 344 8.74e-47 167
MsG0780038307.01.T01 MTR_8g102380 34.069 317 177 8 243 545 81 379 3.10e-45 164
MsG0780038307.01.T01 MTR_7g092780 32.268 313 188 6 242 544 90 388 8.82e-44 160
MsG0780038307.01.T01 MTR_5g083590 30.380 316 167 4 240 554 5 268 1.04e-43 157
MsG0780038307.01.T01 MTR_7g011530 30.389 283 174 4 244 516 8 277 9.70e-43 155
MsG0780038307.01.T01 MTR_5g095490 32.362 309 180 7 248 544 67 358 2.20e-41 153
MsG0780038307.01.T01 MTR_4g124740 30.990 313 180 8 242 544 54 340 9.16e-39 145
MsG0780038307.01.T01 MTR_7g102600 31.250 320 193 8 237 545 92 395 1.19e-38 146
MsG0780038307.01.T01 MTR_6g042660 30.496 282 171 6 240 516 35 296 7.32e-38 142
MsG0780038307.01.T01 MTR_8g102380 34.221 263 146 6 243 491 81 330 4.37e-37 140
MsG0780038307.01.T01 MTR_4g074290 31.190 311 185 9 242 543 71 361 2.31e-36 139
MsG0780038307.01.T01 MTR_5g012600 28.481 316 199 6 242 546 63 362 4.24e-36 138
MsG0780038307.01.T01 MTR_0009s0350 30.725 345 198 11 213 543 44 361 4.77e-36 138
MsG0780038307.01.T01 MTR_0009s0340 30.725 345 198 11 213 543 44 361 4.77e-36 138
MsG0780038307.01.T01 MTR_1g033050 30.657 274 168 5 250 516 26 284 5.24e-36 137
MsG0780038307.01.T01 MTR_2g073390 30.645 310 188 8 242 543 71 361 2.68e-35 136
MsG0780038307.01.T01 MTR_5g093970 30.421 309 190 7 242 545 43 331 7.05e-34 131
MsG0780038307.01.T01 MTR_6g042690 29.965 287 171 6 240 516 37 303 1.00e-33 131
MsG0780038307.01.T01 MTR_5g088300 28.076 317 206 6 229 545 24 318 3.06e-32 127
MsG0780038307.01.T01 MTR_5g088280 26.623 308 204 6 238 545 35 320 5.77e-29 117
MsG0780038307.01.T01 MTR_5g088290 26.645 304 202 5 242 545 48 330 9.09e-29 117
MsG0780038307.01.T01 MTR_2g033970 27.554 323 210 7 227 543 42 346 1.14e-28 117
MsG0780038307.01.T01 MTR_4g051810 29.861 288 183 5 229 516 24 292 1.46e-27 113
MsG0780038307.01.T01 MTR_2g436070 28.296 311 166 10 56 313 15 321 8.04e-25 106
MsG0780038307.01.T01 MTR_8g036225 25.352 284 185 6 242 516 33 298 2.29e-24 104
MsG0780038307.01.T01 MTR_2g436600 25.857 321 209 9 227 543 41 336 8.74e-22 97.1
MsG0780038307.01.T01 MTR_6g025590 32.143 168 106 3 242 401 49 216 3.31e-19 87.4
MsG0780038307.01.T01 MTR_0408s0030 37.755 98 50 2 419 516 37 123 9.76e-18 80.9
MsG0780038307.01.T01 MTR_6g024200 36.508 126 65 4 419 543 165 276 2.23e-13 71.2
MsG0780038307.01.T01 MTR_4g130790 29.762 168 108 4 265 425 48 212 1.40e-12 68.6
MsG0780038307.01.T01 MTR_1g492770 44.872 78 37 4 259 334 4 77 6.79e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038307.01.T01 AT1G11580 56.437 567 219 10 3 554 4 557 0.0 616
MsG0780038307.01.T01 AT1G11580 56.437 567 219 10 3 554 25 578 0.0 616
MsG0780038307.01.T01 AT5G53370 47.537 467 229 6 102 554 121 585 2.07e-147 437
MsG0780038307.01.T01 AT5G53370 47.537 467 229 6 102 554 157 621 3.64e-147 437
MsG0780038307.01.T01 AT2G45220 52.009 448 177 14 117 554 92 511 3.93e-143 423
MsG0780038307.01.T01 AT3G49220 46.681 452 225 5 116 554 148 596 1.22e-142 425
MsG0780038307.01.T01 AT3G43270 45.975 472 235 7 99 554 58 525 2.66e-142 421
MsG0780038307.01.T01 AT3G49220 46.681 452 225 5 116 554 193 641 3.21e-142 425
MsG0780038307.01.T01 AT4G33220 46.467 467 214 10 117 554 64 523 6.64e-138 410
MsG0780038307.01.T01 AT3G14310 45.674 497 228 9 96 554 100 592 2.85e-137 411
MsG0780038307.01.T01 AT3G59010 48.758 443 201 8 122 554 102 528 3.08e-135 404
MsG0780038307.01.T01 AT2G43050 47.856 443 197 10 122 554 98 516 3.12e-133 398
MsG0780038307.01.T01 AT1G53830 44.488 508 244 10 78 554 87 587 1.55e-132 399
MsG0780038307.01.T01 AT4G02320 41.535 508 258 10 72 554 25 518 5.85e-132 395
MsG0780038307.01.T01 AT1G11590 46.560 436 218 8 126 554 97 524 4.39e-131 392
MsG0780038307.01.T01 AT5G04960 46.136 440 217 5 121 550 131 560 2.00e-130 392
MsG0780038307.01.T01 AT4G03930 40.820 512 281 10 54 554 24 524 5.44e-130 390
MsG0780038307.01.T01 AT4G02300 41.897 506 264 8 72 554 34 532 5.74e-130 390
MsG0780038307.01.T01 AT2G26440 39.777 538 295 10 35 554 21 547 1.43e-128 387
MsG0780038307.01.T01 AT4G33220 51.989 352 161 4 204 554 58 402 1.78e-128 382
MsG0780038307.01.T01 AT5G27870 41.850 454 242 7 116 554 116 562 1.02e-127 391
MsG0780038307.01.T01 AT3G05620 41.667 564 266 17 29 554 3 541 1.78e-127 384
MsG0780038307.01.T01 AT3G60730 43.441 465 223 6 119 554 66 519 2.90e-126 380
MsG0780038307.01.T01 AT3G27980 47.146 403 199 7 155 554 106 497 5.11e-126 379
MsG0780038307.01.T01 AT3G05610 42.105 475 249 10 98 554 99 565 6.94e-126 384
MsG0780038307.01.T01 AT5G51490 44.667 450 228 7 117 554 96 536 9.72e-125 377
MsG0780038307.01.T01 AT5G51500 45.212 449 227 7 117 554 100 540 4.09e-124 375
MsG0780038307.01.T01 AT3G47400 44.889 450 231 7 117 554 150 594 2.40e-120 367
MsG0780038307.01.T01 AT2G47550 43.469 467 224 10 121 554 99 558 2.31e-118 361
MsG0780038307.01.T01 AT1G02810 42.012 507 226 11 109 554 78 577 5.33e-118 361
MsG0780038307.01.T01 AT1G53840 39.479 537 276 13 42 548 64 581 1.22e-117 360
MsG0780038307.01.T01 AT3G10710 38.370 503 292 6 55 554 74 561 1.34e-117 359
MsG0780038307.01.T01 AT4G02330 42.443 483 222 12 121 554 96 571 9.68e-117 357
MsG0780038307.01.T01 AT5G49180 37.143 560 313 13 18 550 19 566 1.83e-115 354
MsG0780038307.01.T01 AT2G26450 40.487 452 237 9 121 554 174 611 5.54e-114 352
MsG0780038307.01.T01 AT4G33230 38.855 489 266 10 90 554 127 606 1.57e-112 348
MsG0780038307.01.T01 AT1G23200 40.400 500 236 12 99 554 73 554 2.04e-112 345
MsG0780038307.01.T01 AT5G20860 42.369 439 232 8 125 554 112 538 1.58e-111 343
MsG0780038307.01.T01 AT3G10720 41.807 476 233 10 118 554 145 615 1.03e-109 341
MsG0780038307.01.T01 AT3G14300 39.796 490 270 9 68 540 473 954 6.27e-109 348
MsG0780038307.01.T01 AT4G00190 43.151 438 218 10 121 554 64 474 7.83e-109 334
MsG0780038307.01.T01 AT5G04970 40.336 476 240 9 118 554 150 620 9.04e-105 328
MsG0780038307.01.T01 AT1G11370 58.197 244 102 0 239 482 43 286 2.14e-103 313
MsG0780038307.01.T01 AT3G06830 38.344 459 257 11 115 551 111 565 4.37e-103 322
MsG0780038307.01.T01 AT4G15980 46.884 337 173 4 217 550 365 698 1.01e-97 312
MsG0780038307.01.T01 AT4G15980 46.884 337 173 4 217 550 375 708 2.28e-97 311
MsG0780038307.01.T01 AT3G10720 53.817 262 118 2 293 554 1 259 1.90e-94 289
MsG0780038307.01.T01 AT5G20860 39.151 424 209 7 125 539 112 495 2.70e-90 287
MsG0780038307.01.T01 AT5G09760 36.031 519 280 15 55 542 49 546 4.21e-87 280
MsG0780038307.01.T01 AT5G09760 36.031 519 280 15 55 542 75 572 1.17e-86 280
MsG0780038307.01.T01 AT2G47030 38.799 433 221 10 143 554 179 588 8.82e-85 275
MsG0780038307.01.T01 AT5G64640 35.863 527 263 20 64 546 106 601 6.42e-84 273
MsG0780038307.01.T01 AT2G47040 41.160 362 196 6 203 554 241 595 5.44e-82 268
MsG0780038307.01.T01 AT3G62170 31.947 601 319 17 22 554 10 588 2.63e-80 263
MsG0780038307.01.T01 AT1G44980 42.174 230 127 3 180 406 16 242 1.78e-53 182
MsG0780038307.01.T01 AT1G05310 32.399 321 187 6 237 544 86 389 9.59e-46 166
MsG0780038307.01.T01 AT3G29090 31.228 285 173 4 242 516 7 278 1.33e-45 163
MsG0780038307.01.T01 AT2G21610 33.443 305 179 7 242 544 51 333 1.69e-45 164
MsG0780038307.01.T01 AT2G21610 33.443 305 179 7 242 544 56 338 2.11e-45 164
MsG0780038307.01.T01 AT5G19730 33.660 306 175 7 250 544 94 382 1.09e-43 160
MsG0780038307.01.T01 AT2G36700 32.573 307 183 6 244 543 44 333 2.77e-43 157
MsG0780038307.01.T01 AT2G36710 31.975 319 194 7 239 548 86 390 3.29e-43 159
MsG0780038307.01.T01 AT2G19150 30.721 319 199 6 238 550 37 339 4.36e-36 138
MsG0780038307.01.T01 AT5G07430 28.226 372 222 11 194 543 7 355 1.01e-35 137
MsG0780038307.01.T01 AT5G47500 27.796 313 199 6 242 543 61 357 4.14e-35 135
MsG0780038307.01.T01 AT3G49220 34.599 237 132 7 116 336 193 422 1.68e-34 135
MsG0780038307.01.T01 AT5G55590 30.312 320 192 9 238 544 78 379 2.26e-34 134
MsG0780038307.01.T01 AT3G17060 27.832 309 200 6 241 543 45 336 6.15e-34 132
MsG0780038307.01.T01 AT5G07420 29.904 311 187 9 242 543 67 355 1.05e-33 132
MsG0780038307.01.T01 AT5G18990 29.371 286 176 5 242 516 29 299 1.48e-32 128
MsG0780038307.01.T01 AT3G24130 29.097 299 185 6 230 516 21 304 1.53e-32 128
MsG0780038307.01.T01 AT2G19150 31.008 258 165 3 238 491 37 285 3.29e-32 125
MsG0780038307.01.T01 AT5G55590 31.034 261 154 7 238 485 78 325 5.54e-32 126
MsG0780038307.01.T01 AT1G69940 28.135 327 203 10 228 543 50 355 1.51e-31 125
MsG0780038307.01.T01 AT5G61680 28.296 311 193 8 242 543 69 358 4.15e-31 124
MsG0780038307.01.T01 AT5G07410 27.829 327 204 10 228 543 50 355 8.48e-31 123
MsG0780038307.01.T01 AT5G26810 26.901 342 207 7 230 545 11 335 1.15e-28 117
MsG0780038307.01.T01 AT2G47280 28.669 293 185 5 233 516 26 303 6.62e-28 115

Find 151 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTGTGATGCAATCCTTTC+TGG 0.106056 7:+43907552 MsG0780038307.01.T01:CDS
AATCCCTTCCCAAAACTTTC+TGG 0.151586 7:+43905970 MsG0780038307.01.T01:CDS
ACTTGTCCATGAACAGAATT+TGG 0.169985 7:+43906321 MsG0780038307.01.T01:CDS
TCGCTGCGCCTGCTGTATTT+TGG 0.180423 7:-43907162 None:intergenic
TTGGTTGGCCATGGGCTTTC+GGG 0.209872 7:-43907374 None:intergenic
GTATGTTATCTATGTGAAAA+AGG 0.237847 7:+43906739 MsG0780038307.01.T01:CDS
GAGGATTAACCAGAAAGTTT+TGG 0.241452 7:-43905979 None:intergenic
TTTGGTTGGCCATGGGCTTT+CGG 0.265463 7:-43907375 None:intergenic
GGTACCATTGACTTCATCTT+TGG 0.274786 7:+43907313 MsG0780038307.01.T01:CDS
GGGCCACCAACTTGCACTTC+TGG 0.282244 7:-43907354 None:intergenic
AAGCAAAGATAGGAGGCTTT+TGG 0.282961 7:+43906604 MsG0780038307.01.T01:CDS
ACCTGGGTCTTCTCGACCTT+GGG 0.284528 7:-43907413 None:intergenic
AGATTTGTTTGGTCTATATA+AGG 0.294844 7:+43905856 MsG0780038307.01.T01:five_prime_UTR
TTCATTGATGATACGTTGAT+TGG 0.300783 7:+43906560 MsG0780038307.01.T01:CDS
TGAATAGCATGATATTTCTA+AGG 0.304864 7:+43908113 MsG0780038307.01.T01:three_prime_UTR
GGTGCAGTGTACTATCTTAT+TGG 0.310877 7:-43908014 None:intergenic
TACAAAGAGAACATAGAAAT+TGG 0.317816 7:+43906767 MsG0780038307.01.T01:CDS
TTTGCAGCTGCGGTTGGGGA+TGG 0.318538 7:+43907115 MsG0780038307.01.T01:intron
TGCGGTGGACTTGGTTAATA+AGG 0.327008 7:-43906201 None:intergenic
CTTCTCTAGGGCTATTAATT+CGG 0.335855 7:-43906265 None:intergenic
TCAGACCTTAAGCCCGTTGC+GGG 0.354862 7:+43907481 MsG0780038307.01.T01:CDS
TACCGTGACTCCGTCATTAC+AGG 0.354963 7:+43907292 MsG0780038307.01.T01:CDS
CATAGTCTCCTCTGTTGTAT+TGG 0.362775 7:+43908163 MsG0780038307.01.T01:three_prime_UTR
TCAACGTATCATCAATGAAT+TGG 0.386648 7:-43906556 None:intergenic
CGAGTCCCAAATTCTGTTCA+TGG 0.391468 7:-43906327 None:intergenic
TTGCAGCTGCGGTTGGGGAT+GGG 0.396223 7:+43907116 MsG0780038307.01.T01:intron
GGTTTATAGCACAAGACATT+TGG 0.398305 7:+43907137 MsG0780038307.01.T01:CDS
GGGCTCCATCAAAACATTCC+TGG 0.399653 7:+43907501 MsG0780038307.01.T01:CDS
CTACAAAATAGAGATTTGTT+TGG 0.400917 7:+43905845 MsG0780038307.01.T01:five_prime_UTR
GGGCTGTAAACATGTTGTTT+TGG 0.401016 7:-43907393 None:intergenic
AACTAATCCAAGGAAATGTT+TGG 0.403386 7:+43907758 MsG0780038307.01.T01:CDS
CTCTTTATGCACACTCCAAT+AGG 0.405050 7:+43907263 MsG0780038307.01.T01:CDS
ACTTGCTTGGATGGATTAGA+AGG 0.410175 7:+43906431 MsG0780038307.01.T01:CDS
TTTCTGCAAACATTGTATTA+CGG 0.410608 7:+43907628 MsG0780038307.01.T01:CDS
TAAGGTCTGAACTTGGTGTT+AGG 0.411739 7:-43907468 None:intergenic
AAATATTACAAGACACGTTA+AGG 0.411964 7:-43908067 None:intergenic
CTAACATGAGTGGATGTTGT+AGG 0.420026 7:+43907857 MsG0780038307.01.T01:three_prime_UTR
GACCTGGGTCTTCTCGACCT+TGG 0.420657 7:-43907414 None:intergenic
AGGTACATCTCGGGTCGTTA+TGG 0.421631 7:+43906451 MsG0780038307.01.T01:CDS
CCCACTCAGCCCATCCTGTT+GGG 0.422248 7:-43907588 None:intergenic
CTCAAAGCAATTTCTTCTCT+AGG 0.423277 7:-43906278 None:intergenic
TGGAGCCCGCAACGGGCTTA+AGG 0.428606 7:-43907486 None:intergenic
CGCAGCGAAGCACCAGGCAG+TGG 0.429378 7:+43907177 MsG0780038307.01.T01:CDS
TACTTTGTCTTACCGTTGTC+AGG 0.432373 7:-43906719 None:intergenic
CACTAACCATGCAACTTGCT+TGG 0.434494 7:+43906418 MsG0780038307.01.T01:CDS
GTCCGCTGTTGGGGACATAA+AGG 0.435760 7:+43906628 MsG0780038307.01.T01:CDS
GAGTGACTGTGAACAACTAA+TGG 0.436097 7:+43906298 MsG0780038307.01.T01:CDS
TAAGAGCAGAAGGTTTGAAA+TGG 0.440674 7:+43907904 MsG0780038307.01.T01:three_prime_UTR
AACCATGCAACTTGCTTGGA+TGG 0.443880 7:+43906422 MsG0780038307.01.T01:CDS
AGCAGGCGCAGCGAAGCACC+AGG 0.448921 7:+43907171 MsG0780038307.01.T01:CDS
TCTTCAACCAAACATTTCCT+TGG 0.448984 7:-43907765 None:intergenic
CTCTGGATATCAAGTCTTGA+AGG 0.451576 7:-43906481 None:intergenic
TTGAATATGTGCGGTGGACT+TGG 0.458597 7:-43906210 None:intergenic
TGAGTGGGATGCTGCGAGTA+AGG 0.459391 7:+43907603 MsG0780038307.01.T01:CDS
GTCACGGTAAAATTGCCTAT+TGG 0.463466 7:-43907278 None:intergenic
CGTGGGTTACAAGCAAAGAT+AGG 0.464160 7:+43906594 MsG0780038307.01.T01:CDS
CTTGTCCATGAACAGAATTT+GGG 0.465545 7:+43906322 MsG0780038307.01.T01:CDS
GGCAAATGTTGTGGTAGCTC+AGG 0.467411 7:+43906649 MsG0780038307.01.T01:CDS
AGTATCTCACGTCCCAACTT+TGG 0.472472 7:+43906142 MsG0780038307.01.T01:CDS
ACAAGAGTACGTGCAACCTT+TGG 0.474090 7:-43906178 None:intergenic
GTCCTGGAATATTTCTTCCA+TGG 0.474721 7:-43907529 None:intergenic
ATATTACAAGCCTTCGGTAA+AGG 0.475251 7:-43907800 None:intergenic
GTACTAGCTACTTATCAGTA+TGG 0.476776 7:+43905914 MsG0780038307.01.T01:exon
TCCCACTCAGCCCATCCTGT+TGG 0.478365 7:-43907589 None:intergenic
GGCTCCATCAAAACATTCCT+GGG 0.481037 7:+43907502 MsG0780038307.01.T01:CDS
TCCTGGAATATTTCTTCCAT+GGG 0.487568 7:-43907528 None:intergenic
GCCCATGGAAGAAATATTCC+AGG 0.490494 7:+43907527 MsG0780038307.01.T01:CDS
TCAAAGCAATTTCTTCTCTA+GGG 0.506111 7:-43906277 None:intergenic
TACTGATAAGTAGCTAGTAC+TGG 0.506474 7:-43905911 None:intergenic
CAGCATGTTCACAGTAAACA+TGG 0.508287 7:-43906085 None:intergenic
GACAGCCACATTGACCCAAC+AGG 0.508812 7:+43907574 MsG0780038307.01.T01:CDS
GTGGTGAGGTGAAAGGAGAT+TGG 0.512177 7:-43906056 None:intergenic
GCCAAGAGAGTCACTTGGCC+AGG 0.512980 7:+43907685 MsG0780038307.01.T01:CDS
CAAGTTCAAGACTGTGGCTG+AGG 0.513541 7:+43906682 MsG0780038307.01.T01:CDS
ATTTCTTCCATGGGCGACCC+AGG 0.514021 7:-43907519 None:intergenic
ATGTTCATATTACAAGCCTT+CGG 0.514225 7:-43907806 None:intergenic
AGCTAGAGAAGATCTAGCTC+TGG 0.514776 7:-43906498 None:intergenic
CACATCAAGATGCACATACA+TGG 0.525370 7:+43906381 MsG0780038307.01.T01:CDS
GGATTGCATCACAACAGTCC+TGG 0.534374 7:-43907545 None:intergenic
GATAACATTAGCTGTGTCCA+TGG 0.536396 7:-43906237 None:intergenic
ATGAACAACGGACCAGGTGC+TGG 0.539031 7:+43907658 MsG0780038307.01.T01:CDS
AAACATTCCTGGGTCGCCCA+TGG 0.547284 7:+43907512 MsG0780038307.01.T01:CDS
GTTCCAGAAGTGCAAGTTGG+TGG 0.551113 7:+43907351 MsG0780038307.01.T01:CDS
ATTTGGTTCCAAAATACAGC+AGG 0.554840 7:+43907154 MsG0780038307.01.T01:CDS
ACCTGGCCAAGTGACTCTCT+TGG 0.556537 7:-43907686 None:intergenic
GGCAACTTAAATTTCATCGA+TGG 0.559014 7:+43906848 MsG0780038307.01.T01:CDS
ATTTGCGCTTTAAGAGCAGA+AGG 0.559539 7:+43907894 MsG0780038307.01.T01:three_prime_UTR
GATGCTCGTTGGTGATGGTA+TGG 0.559856 7:+43906808 MsG0780038307.01.T01:CDS
GTCAATGTGGCTGTCCAGAA+AGG 0.560723 7:-43907566 None:intergenic
TTCAGACCTTAAGCCCGTTG+CGG 0.562066 7:+43907480 MsG0780038307.01.T01:CDS
AACAACATGTTTACAGCCCA+AGG 0.562803 7:+43907397 MsG0780038307.01.T01:CDS
GATTGGCGAATTTCCATCGT+GGG 0.566101 7:+43906577 MsG0780038307.01.T01:CDS
AATGTTTGGTTGAAGAACAC+AGG 0.570110 7:+43907772 MsG0780038307.01.T01:CDS
CTCTTGGCAGTACCAGCACC+TGG 0.572859 7:-43907670 None:intergenic
AATGTTGTGGTAGCTCAGGA+TGG 0.574445 7:+43906653 MsG0780038307.01.T01:CDS
TGGATTAGAAGGTACATCTC+GGG 0.575964 7:+43906442 MsG0780038307.01.T01:CDS
GTCAATGGTACCTGTAATGA+CGG 0.576527 7:-43907302 None:intergenic
CGCACATATTCAAAATGCCA+TGG 0.577063 7:+43906220 MsG0780038307.01.T01:CDS
GTTGGTGGCCCGAAAGCCCA+TGG 0.580256 7:+43907366 MsG0780038307.01.T01:CDS
GTTTCCAAAGATGAAGTCAA+TGG 0.582146 7:-43907317 None:intergenic
GGCAACGGTTGATGACAGAT+TGG 0.583641 7:-43907219 None:intergenic
ATGGATTAGAAGGTACATCT+CGG 0.583723 7:+43906441 MsG0780038307.01.T01:CDS
CCACATTGACCCAACAGGAT+GGG 0.583831 7:+43907579 MsG0780038307.01.T01:CDS
ACAGGGGTGGCCTTTACCGA+AGG 0.584133 7:+43907790 MsG0780038307.01.T01:CDS
GCCACATTGACCCAACAGGA+TGG 0.584474 7:+43907578 MsG0780038307.01.T01:CDS
GAAAGGCGTCAATGCGGCAA+CGG 0.586577 7:-43907234 None:intergenic
ACGGGCTTAAGGTCTGAACT+TGG 0.586940 7:-43907475 None:intergenic
CCCAACAGGATGGGCTGAGT+GGG 0.587397 7:+43907588 MsG0780038307.01.T01:CDS
CGACACGTAGAGCCACTGCC+TGG 0.588311 7:-43907189 None:intergenic
TGCCTTTATGTCCCCAACAG+CGG 0.591810 7:-43906630 None:intergenic
GAGTACATGAACAACGGACC+AGG 0.591905 7:+43907652 MsG0780038307.01.T01:CDS
ATGGATGCAACAATAATCAC+AGG 0.596549 7:+43906827 MsG0780038307.01.T01:CDS
GGGAGCTGTGGTGAGGTGAA+AGG 0.599630 7:-43906063 None:intergenic
AAAACAAATGTGATGCTCGT+TGG 0.603543 7:+43906797 MsG0780038307.01.T01:CDS
TGTCATCAAAACTGCTGCAG+AGG 0.604794 7:+43907714 MsG0780038307.01.T01:CDS
ACAGTAAACATGGGGAGCTG+TGG 0.609722 7:-43906075 None:intergenic
AATGTGATGCTCGTTGGTGA+TGG 0.611460 7:+43906803 MsG0780038307.01.T01:CDS
ATGTTTGGTTGAAGAACACA+GGG 0.616958 7:+43907773 MsG0780038307.01.T01:CDS
ATGTTGTGGTAGCTCAGGAT+GGG 0.618603 7:+43906654 MsG0780038307.01.T01:CDS
ACAGTAGCGCAACTAATCCA+AGG 0.618888 7:+43907748 MsG0780038307.01.T01:CDS
CCCATCCTGTTGGGTCAATG+TGG 0.620356 7:-43907579 None:intergenic
TACCTGTAATGACGGAGTCA+CGG 0.621284 7:-43907294 None:intergenic
ACCCAACAGGATGGGCTGAG+TGG 0.626812 7:+43907587 MsG0780038307.01.T01:CDS
ATCCATCCAAGCAAGTTGCA+TGG 0.627349 7:-43906424 None:intergenic
TGCATAAAGAGTGTCTTGAA+AGG 0.628969 7:-43907251 None:intergenic
ACCTTCAAAAGTTCAACTGT+CGG 0.630957 7:+43906878 MsG0780038307.01.T01:CDS
CAGGCAGTGGCTCTACGTGT+CGG 0.632632 7:+43907190 MsG0780038307.01.T01:CDS
GTGGTAGCTCAGGATGGGAG+TGG 0.636497 7:+43906659 MsG0780038307.01.T01:CDS
GGACATAAAGGCAAATGTTG+TGG 0.637122 7:+43906640 MsG0780038307.01.T01:CDS
GGGTTACAAGCAAAGATAGG+AGG 0.637188 7:+43906597 MsG0780038307.01.T01:CDS
AGCATGTTCACAGTAAACAT+GGG 0.638132 7:-43906084 None:intergenic
TGGTCACCACAAAAGACCAA+AGG 0.642299 7:+43906162 MsG0780038307.01.T01:CDS
AAGTTCAAGACTGTGGCTGA+GGG 0.643320 7:+43906683 MsG0780038307.01.T01:CDS
TGTGTTCCAGAAGTGCAAGT+TGG 0.646155 7:+43907348 MsG0780038307.01.T01:CDS
TGATTGGCGAATTTCCATCG+TGG 0.651137 7:+43906576 MsG0780038307.01.T01:CDS
TCTTTGCTTGTAACCCACGA+TGG 0.653493 7:-43906590 None:intergenic
TTATGATAGCAACTAAAGAG+AGG 0.658604 7:-43905998 None:intergenic
TCATGTACGAACAATGTGCA+AGG 0.669289 7:-43908035 None:intergenic
GTAGCATCTGCACCTGACAA+CGG 0.673302 7:+43906707 MsG0780038307.01.T01:CDS
GCCCAAGGTCGAGAAGACCC+AGG 0.680834 7:+43907412 MsG0780038307.01.T01:CDS
GAAGACCCAGGTCAAAACAC+AGG 0.681710 7:+43907424 MsG0780038307.01.T01:CDS
AAGGCTTGTAATATGAACAT+CGG 0.683956 7:+43907809 MsG0780038307.01.T01:exon
GTACTGCCAAGAGAGTCACT+TGG 0.684987 7:+43907680 MsG0780038307.01.T01:CDS
TAGTTTGTTTCTAACATGAG+TGG 0.685227 7:+43907847 MsG0780038307.01.T01:three_prime_UTR
TTGGTTGAAGAACACAGGGG+TGG 0.685455 7:+43907777 MsG0780038307.01.T01:CDS
TACGGAGAGTACATGAACAA+CGG 0.694392 7:+43907646 MsG0780038307.01.T01:CDS
GCATGTTCACAGTAAACATG+GGG 0.697733 7:-43906083 None:intergenic
AAACATGGGGAGCTGTGGTG+AGG 0.712309 7:-43906070 None:intergenic
TGTCTTGAAAGGCGTCAATG+CGG 0.736047 7:-43907240 None:intergenic
GAGTGGCAAGTTCAAGACTG+TGG 0.790308 7:+43906676 MsG0780038307.01.T01:CDS
TGTTTGGTTGAAGAACACAG+GGG 0.875092 7:+43907774 MsG0780038307.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGTATACATAAAAATGAAA+TGG - Chr7:43906939-43906958 None:intergenic 15.0%
!! AAGTTCATACTTTAATTGAA+TGG + Chr7:43907049-43907068 MsG0780038307.01.T01:intron 20.0%
!! ATTCAATTAAAGTATGAACT+TGG - Chr7:43907050-43907069 None:intergenic 20.0%
!! TATGTTATCTATGTGAAAAA+GGG + Chr7:43906740-43906759 MsG0780038307.01.T01:CDS 20.0%
!!! TATGAACTTTTTCTTGAAAA+GGG - Chr7:43908147-43908166 None:intergenic 20.0%
! AAATATTACAAGACACGTTA+AGG - Chr7:43908070-43908089 None:intergenic 25.0%
! AAATGGTAATTACGAAAAAG+GGG - Chr7:43906922-43906941 None:intergenic 25.0%
! CTTGAGATGAGTAAAAATAA+GGG - Chr7:43906033-43906052 None:intergenic 25.0%
! GAAATGGTAATTACGAAAAA+GGG - Chr7:43906923-43906942 None:intergenic 25.0%
! GTATGTTATCTATGTGAAAA+AGG + Chr7:43906739-43906758 MsG0780038307.01.T01:CDS 25.0%
! TACAAAGAGAACATAGAAAT+TGG + Chr7:43906767-43906786 MsG0780038307.01.T01:CDS 25.0%
! TCTTGAGATGAGTAAAAATA+AGG - Chr7:43906034-43906053 None:intergenic 25.0%
! TGAAATGGTAATTACGAAAA+AGG - Chr7:43906924-43906943 None:intergenic 25.0%
! TTTCTGCAAACATTGTATTA+CGG + Chr7:43907628-43907647 MsG0780038307.01.T01:CDS 25.0%
!! AAATGGAATGTTTTCTTCTA+AGG + Chr7:43907921-43907940 MsG0780038307.01.T01:three_prime_UTR 25.0%
!! AATGGAATGTTTTCTTCTAA+GGG + Chr7:43907922-43907941 MsG0780038307.01.T01:three_prime_UTR 25.0%
!! AGATTTGTTTGGTCTATATA+AGG + Chr7:43905856-43905875 MsG0780038307.01.T01:five_prime_UTR 25.0%
!! CTACAAAATAGAGATTTGTT+TGG + Chr7:43905845-43905864 MsG0780038307.01.T01:five_prime_UTR 25.0%
!! TGAATAGCATGATATTTCTA+AGG + Chr7:43908113-43908132 MsG0780038307.01.T01:three_prime_UTR 25.0%
!!! ATGAACTTTTTCTTGAAAAG+GGG - Chr7:43908146-43908165 None:intergenic 25.0%
!!! CTATGAACTTTTTCTTGAAA+AGG - Chr7:43908148-43908167 None:intergenic 25.0%
AACTAATCCAAGGAAATGTT+TGG + Chr7:43907758-43907777 MsG0780038307.01.T01:CDS 30.0%
AAGGCTTGTAATATGAACAT+CGG + Chr7:43907809-43907828 MsG0780038307.01.T01:exon 30.0%
ACACTAACCACATAATAATC+TGG + Chr7:43907091-43907110 MsG0780038307.01.T01:intron 30.0%
AGTATGAACTTGGCAAATTA+AGG - Chr7:43907040-43907059 None:intergenic 30.0%
ATGTTCATATTACAAGCCTT+CGG - Chr7:43907809-43907828 None:intergenic 30.0%
TCAAAGCAATTTCTTCTCTA+GGG - Chr7:43906280-43906299 None:intergenic 30.0%
TCAACGTATCATCAATGAAT+TGG - Chr7:43906559-43906578 None:intergenic 30.0%
TGCAAAACCAGATTATTATG+TGG - Chr7:43907101-43907120 None:intergenic 30.0%
TTATGATAGCAACTAAAGAG+AGG - Chr7:43906001-43906020 None:intergenic 30.0%
! AGGATTAACCAGAAAGTTTT+GGG - Chr7:43905981-43906000 None:intergenic 30.0%
! GAGGATTTTGTAGTCTTTTA+TGG + Chr7:43907944-43907963 MsG0780038307.01.T01:three_prime_UTR 30.0%
! TTCATTGATGATACGTTGAT+TGG + Chr7:43906560-43906579 MsG0780038307.01.T01:CDS 30.0%
!! ATGTGGTTAGTGTTGATATT+TGG - Chr7:43907084-43907103 None:intergenic 30.0%
!! GTTAGTGTTGATATTTGGTT+AGG - Chr7:43907079-43907098 None:intergenic 30.0%
!! TAGTTTGTTTCTAACATGAG+TGG + Chr7:43907847-43907866 MsG0780038307.01.T01:three_prime_UTR 30.0%
!!! GAGTATGAAACTTTTTTGAC+AGG - Chr7:43907016-43907035 None:intergenic 30.0%
!!! TCTTGTTGTTTTTCCTCAAA+AGG + Chr7:43906526-43906545 MsG0780038307.01.T01:CDS 30.0%
!!! TGTAAACATGTTGTTTTGGT+TGG - Chr7:43907392-43907411 None:intergenic 30.0%
AAAACAAATGTGATGCTCGT+TGG + Chr7:43906797-43906816 MsG0780038307.01.T01:CDS 35.0%
AATGTTTGGTTGAAGAACAC+AGG + Chr7:43907772-43907791 MsG0780038307.01.T01:CDS 35.0%
ACCTTCAAAAGTTCAACTGT+CGG + Chr7:43906878-43906897 MsG0780038307.01.T01:CDS 35.0%
ACTTGTCCATGAACAGAATT+TGG + Chr7:43906321-43906340 MsG0780038307.01.T01:CDS 35.0%
AGCATGTTCACAGTAAACAT+GGG - Chr7:43906087-43906106 None:intergenic 35.0%
ATATTACAAGCCTTCGGTAA+AGG - Chr7:43907803-43907822 None:intergenic 35.0%
ATGGATGCAACAATAATCAC+AGG + Chr7:43906827-43906846 MsG0780038307.01.T01:CDS 35.0%
ATGTTTGGTTGAAGAACACA+GGG + Chr7:43907773-43907792 MsG0780038307.01.T01:CDS 35.0%
CTCAAAGCAATTTCTTCTCT+AGG - Chr7:43906281-43906300 None:intergenic 35.0%
CTTGTCCATGAACAGAATTT+GGG + Chr7:43906322-43906341 MsG0780038307.01.T01:CDS 35.0%
GGCAACTTAAATTTCATCGA+TGG + Chr7:43906848-43906867 MsG0780038307.01.T01:CDS 35.0%
GGTTTATAGCACAAGACATT+TGG + Chr7:43907137-43907156 MsG0780038307.01.T01:CDS 35.0%
GTACTAGCTACTTATCAGTA+TGG + Chr7:43905914-43905933 MsG0780038307.01.T01:exon 35.0%
GTTTCCAAAGATGAAGTCAA+TGG - Chr7:43907320-43907339 None:intergenic 35.0%
TAAGAGCAGAAGGTTTGAAA+TGG + Chr7:43907904-43907923 MsG0780038307.01.T01:three_prime_UTR 35.0%
TACTGATAAGTAGCTAGTAC+TGG - Chr7:43905914-43905933 None:intergenic 35.0%
TCCTGGAATATTTCTTCCAT+GGG - Chr7:43907531-43907550 None:intergenic 35.0%
TCTTCAACCAAACATTTCCT+TGG - Chr7:43907768-43907787 None:intergenic 35.0%
! ATTTGGTTCCAAAATACAGC+AGG + Chr7:43907154-43907173 MsG0780038307.01.T01:CDS 35.0%
! CATGGCATTTTGAATATGTG+CGG - Chr7:43906222-43906241 None:intergenic 35.0%
! GAGGATTAACCAGAAAGTTT+TGG - Chr7:43905982-43906001 None:intergenic 35.0%
! TTTTTGACAGGAGTAGAGTA+TGG - Chr7:43907004-43907023 None:intergenic 35.0%
!! ATGGATTAGAAGGTACATCT+CGG + Chr7:43906441-43906460 MsG0780038307.01.T01:CDS 35.0%
!! CTTCTCTAGGGCTATTAATT+CGG - Chr7:43906268-43906287 None:intergenic 35.0%
!! GTTTTGATGACATGATAACC+TGG - Chr7:43907706-43907725 None:intergenic 35.0%
!! TGCATAAAGAGTGTCTTGAA+AGG - Chr7:43907254-43907273 None:intergenic 35.0%
!!! TAACCAGAAAGTTTTGGGAA+GGG - Chr7:43905976-43905995 None:intergenic 35.0%
!!! TTAACCAGAAAGTTTTGGGA+AGG - Chr7:43905977-43905996 None:intergenic 35.0%
AACAACATGTTTACAGCCCA+AGG + Chr7:43907397-43907416 MsG0780038307.01.T01:CDS 40.0%
AATCCCTTCCCAAAACTTTC+TGG + Chr7:43905970-43905989 MsG0780038307.01.T01:CDS 40.0%
CAAAAGTTCAACTGTCGGTA+TGG + Chr7:43906883-43906902 MsG0780038307.01.T01:intron 40.0%
CACATCAAGATGCACATACA+TGG + Chr7:43906381-43906400 MsG0780038307.01.T01:CDS 40.0%
CAGCATGTTCACAGTAAACA+TGG - Chr7:43906088-43906107 None:intergenic 40.0%
CATAGTCTCCTCTGTTGTAT+TGG + Chr7:43908163-43908182 MsG0780038307.01.T01:three_prime_UTR 40.0%
CGCACATATTCAAAATGCCA+TGG + Chr7:43906220-43906239 MsG0780038307.01.T01:CDS 40.0%
CTAACATGAGTGGATGTTGT+AGG + Chr7:43907857-43907876 MsG0780038307.01.T01:three_prime_UTR 40.0%
CTCTGGATATCAAGTCTTGA+AGG - Chr7:43906484-43906503 None:intergenic 40.0%
CTCTTTATGCACACTCCAAT+AGG + Chr7:43907263-43907282 MsG0780038307.01.T01:CDS 40.0%
GAGTGACTGTGAACAACTAA+TGG + Chr7:43906298-43906317 MsG0780038307.01.T01:CDS 40.0%
GATAACATTAGCTGTGTCCA+TGG - Chr7:43906240-43906259 None:intergenic 40.0%
GCATGTTCACAGTAAACATG+GGG - Chr7:43906086-43906105 None:intergenic 40.0%
GGACATAAAGGCAAATGTTG+TGG + Chr7:43906640-43906659 MsG0780038307.01.T01:CDS 40.0%
GGTAATTACGAAAAAGGGGA+AGG - Chr7:43906918-43906937 None:intergenic 40.0%
GGTGCAGTGTACTATCTTAT+TGG - Chr7:43908017-43908036 None:intergenic 40.0%
GTCAATGGTACCTGTAATGA+CGG - Chr7:43907305-43907324 None:intergenic 40.0%
GTCACGGTAAAATTGCCTAT+TGG - Chr7:43907281-43907300 None:intergenic 40.0%
GTCCTGGAATATTTCTTCCA+TGG - Chr7:43907532-43907551 None:intergenic 40.0%
TACTTTGTCTTACCGTTGTC+AGG - Chr7:43906722-43906741 None:intergenic 40.0%
TCAACTGTCGGTATGGAATA+TGG + Chr7:43906890-43906909 MsG0780038307.01.T01:intron 40.0%
TCATGTACGAACAATGTGCA+AGG - Chr7:43908038-43908057 None:intergenic 40.0%
TGTTGTGATGCAATCCTTTC+TGG + Chr7:43907552-43907571 MsG0780038307.01.T01:CDS 40.0%
TGTTTGGTTGAAGAACACAG+GGG + Chr7:43907774-43907793 MsG0780038307.01.T01:CDS 40.0%
! AAGCAAAGATAGGAGGCTTT+TGG + Chr7:43906604-43906623 MsG0780038307.01.T01:CDS 40.0%
! AATTGGTCACGATCCTTTTG+AGG - Chr7:43906542-43906561 None:intergenic 40.0%
! ACCGACAGTTGAACTTTTGA+AGG - Chr7:43906882-43906901 None:intergenic 40.0%
! CTTTTGTGGTGACCAAAGTT+GGG - Chr7:43906157-43906176 None:intergenic 40.0%
! TACGGAGAGTACATGAACAA+CGG + Chr7:43907646-43907665 MsG0780038307.01.T01:CDS 40.0%
! TCTTTTGTGGTGACCAAAGT+TGG - Chr7:43906158-43906177 None:intergenic 40.0%
! TGGATTAGAAGGTACATCTC+GGG + Chr7:43906442-43906461 MsG0780038307.01.T01:CDS 40.0%
!! ACTTGCTTGGATGGATTAGA+AGG + Chr7:43906431-43906450 MsG0780038307.01.T01:CDS 40.0%
!! ATTTGCGCTTTAAGAGCAGA+AGG + Chr7:43907894-43907913 MsG0780038307.01.T01:three_prime_UTR 40.0%
!! GGAATGTTTTCTTCTAAGGG+AGG + Chr7:43907925-43907944 MsG0780038307.01.T01:three_prime_UTR 40.0%
!! GGGCTGTAAACATGTTGTTT+TGG - Chr7:43907396-43907415 None:intergenic 40.0%
!! GGTACCATTGACTTCATCTT+TGG + Chr7:43907313-43907332 MsG0780038307.01.T01:CDS 40.0%
!! TAAGGTCTGAACTTGGTGTT+AGG - Chr7:43907471-43907490 None:intergenic 40.0%
!!! AAGTTCCTGTGTTTTGACCT+GGG - Chr7:43907432-43907451 None:intergenic 40.0%
!!! ATAATCTGGTTTTGCAGCTG+CGG + Chr7:43907105-43907124 MsG0780038307.01.T01:intron 40.0%
!!! ATGTTGTTTTGGTTGGCCAT+GGG - Chr7:43907385-43907404 None:intergenic 40.0%
!!! GTTTTGGGAAGGGATTTACT+AGG - Chr7:43905966-43905985 None:intergenic 40.0%
AAGTTCAAGACTGTGGCTGA+GGG + Chr7:43906683-43906702 MsG0780038307.01.T01:CDS 45.0%
AATGTTGTGGTAGCTCAGGA+TGG + Chr7:43906653-43906672 MsG0780038307.01.T01:CDS 45.0%
ACAGTAGCGCAACTAATCCA+AGG + Chr7:43907748-43907767 MsG0780038307.01.T01:CDS 45.0%
AGTATCTCACGTCCCAACTT+TGG + Chr7:43906142-43906161 MsG0780038307.01.T01:CDS 45.0%
ATCCATCCAAGCAAGTTGCA+TGG - Chr7:43906427-43906446 None:intergenic 45.0%
ATGTTGTGGTAGCTCAGGAT+GGG + Chr7:43906654-43906673 MsG0780038307.01.T01:CDS 45.0%
CGAGTCCCAAATTCTGTTCA+TGG - Chr7:43906330-43906349 None:intergenic 45.0%
GATTGGCGAATTTCCATCGT+GGG + Chr7:43906577-43906596 MsG0780038307.01.T01:CDS 45.0%
GCCCATGGAAGAAATATTCC+AGG + Chr7:43907527-43907546 MsG0780038307.01.T01:CDS 45.0%
GGCTCCATCAAAACATTCCT+GGG + Chr7:43907502-43907521 MsG0780038307.01.T01:CDS 45.0%
GGGTTACAAGCAAAGATAGG+AGG + Chr7:43906597-43906616 MsG0780038307.01.T01:CDS 45.0%
GTCTCCTCTGTTGTATTGGA+TGG + Chr7:43908167-43908186 MsG0780038307.01.T01:three_prime_UTR 45.0%
TCTTTGCTTGTAACCCACGA+TGG - Chr7:43906593-43906612 None:intergenic 45.0%
TGATTGGCGAATTTCCATCG+TGG + Chr7:43906576-43906595 MsG0780038307.01.T01:CDS 45.0%
TGGTCACCACAAAAGACCAA+AGG + Chr7:43906162-43906181 MsG0780038307.01.T01:CDS 45.0%
TGTCATCAAAACTGCTGCAG+AGG + Chr7:43907714-43907733 MsG0780038307.01.T01:CDS 45.0%
! AACCATGCAACTTGCTTGGA+TGG + Chr7:43906422-43906441 MsG0780038307.01.T01:CDS 45.0%
! AATGTGATGCTCGTTGGTGA+TGG + Chr7:43906803-43906822 MsG0780038307.01.T01:CDS 45.0%
! ACAAGAGTACGTGCAACCTT+TGG - Chr7:43906181-43906200 None:intergenic 45.0%
! AGCTAGAGAAGATCTAGCTC+TGG - Chr7:43906501-43906520 None:intergenic 45.0%
! CACTAACCATGCAACTTGCT+TGG + Chr7:43906418-43906437 MsG0780038307.01.T01:CDS 45.0%
! CGTGGGTTACAAGCAAAGAT+AGG + Chr7:43906594-43906613 MsG0780038307.01.T01:CDS 45.0%
! GGCATTTTGAATATGTGCGG+TGG - Chr7:43906219-43906238 None:intergenic 45.0%
! TACCTGTAATGACGGAGTCA+CGG - Chr7:43907297-43907316 None:intergenic 45.0%
! TGCGGTGGACTTGGTTAATA+AGG - Chr7:43906204-43906223 None:intergenic 45.0%
! TGTGTTCCAGAAGTGCAAGT+TGG + Chr7:43907348-43907367 MsG0780038307.01.T01:CDS 45.0%
! TTGAATATGTGCGGTGGACT+TGG - Chr7:43906213-43906232 None:intergenic 45.0%
!! GTGCAACCTTTGGTCTTTTG+TGG - Chr7:43906171-43906190 None:intergenic 45.0%
!! TGTCTTGAAAGGCGTCAATG+CGG - Chr7:43907243-43907262 None:intergenic 45.0%
!!! CATGTTGTTTTGGTTGGCCA+TGG - Chr7:43907386-43907405 None:intergenic 45.0%
!!! GAAGTTCCTGTGTTTTGACC+TGG - Chr7:43907433-43907452 None:intergenic 45.0%
ACAGTAAACATGGGGAGCTG+TGG - Chr7:43906078-43906097 None:intergenic 50.0%
ACGGGCTTAAGGTCTGAACT+TGG - Chr7:43907478-43907497 None:intergenic 50.0%
AGGTACATCTCGGGTCGTTA+TGG + Chr7:43906451-43906470 MsG0780038307.01.T01:CDS 50.0%
CAAGTTCAAGACTGTGGCTG+AGG + Chr7:43906682-43906701 MsG0780038307.01.T01:CDS 50.0%
CCACATTGACCCAACAGGAT+GGG + Chr7:43907579-43907598 MsG0780038307.01.T01:CDS 50.0%
GAAGACCCAGGTCAAAACAC+AGG + Chr7:43907424-43907443 MsG0780038307.01.T01:CDS 50.0%
GAGTACATGAACAACGGACC+AGG + Chr7:43907652-43907671 MsG0780038307.01.T01:CDS 50.0%
GAGTGGCAAGTTCAAGACTG+TGG + Chr7:43906676-43906695 MsG0780038307.01.T01:CDS 50.0%
GGATTGCATCACAACAGTCC+TGG - Chr7:43907548-43907567 None:intergenic 50.0%
GGCAAATGTTGTGGTAGCTC+AGG + Chr7:43906649-43906668 MsG0780038307.01.T01:CDS 50.0%
GGGCTCCATCAAAACATTCC+TGG + Chr7:43907501-43907520 MsG0780038307.01.T01:CDS 50.0%
GTACTGCCAAGAGAGTCACT+TGG + Chr7:43907680-43907699 MsG0780038307.01.T01:CDS 50.0%
GTAGCATCTGCACCTGACAA+CGG + Chr7:43906707-43906726 MsG0780038307.01.T01:CDS 50.0%
GTCAATGTGGCTGTCCAGAA+AGG - Chr7:43907569-43907588 None:intergenic 50.0%
GTGGTGAGGTGAAAGGAGAT+TGG - Chr7:43906059-43906078 None:intergenic 50.0%
TACCGTGACTCCGTCATTAC+AGG + Chr7:43907292-43907311 MsG0780038307.01.T01:CDS 50.0%
TGCCTTTATGTCCCCAACAG+CGG - Chr7:43906633-43906652 None:intergenic 50.0%
TTCAGACCTTAAGCCCGTTG+CGG + Chr7:43907480-43907499 MsG0780038307.01.T01:CDS 50.0%
TTGGTTGAAGAACACAGGGG+TGG + Chr7:43907777-43907796 MsG0780038307.01.T01:CDS 50.0%
! GTTCCAGAAGTGCAAGTTGG+TGG + Chr7:43907351-43907370 MsG0780038307.01.T01:CDS 50.0%
! TTTGGTTGGCCATGGGCTTT+CGG - Chr7:43907378-43907397 None:intergenic 50.0%
!! GATGCTCGTTGGTGATGGTA+TGG + Chr7:43906808-43906827 MsG0780038307.01.T01:CDS 50.0%
!! GCGACCCAGGAATGTTTTGA+TGG - Chr7:43907509-43907528 None:intergenic 50.0%
!! GGCAACGGTTGATGACAGAT+TGG - Chr7:43907222-43907241 None:intergenic 50.0%
!!! TGTTTTGATGGAGCCCGCAA+CGG - Chr7:43907497-43907516 None:intergenic 50.0%
AAACATGGGGAGCTGTGGTG+AGG - Chr7:43906073-43906092 None:intergenic 55.0%
AAACATTCCTGGGTCGCCCA+TGG + Chr7:43907512-43907531 MsG0780038307.01.T01:CDS 55.0%
ACCTGGCCAAGTGACTCTCT+TGG - Chr7:43907689-43907708 None:intergenic 55.0%
ACCTGGGTCTTCTCGACCTT+GGG - Chr7:43907416-43907435 None:intergenic 55.0%
ATGAACAACGGACCAGGTGC+TGG + Chr7:43907658-43907677 MsG0780038307.01.T01:CDS 55.0%
ATTTCTTCCATGGGCGACCC+AGG - Chr7:43907522-43907541 None:intergenic 55.0%
CCCATCCTGTTGGGTCAATG+TGG - Chr7:43907582-43907601 None:intergenic 55.0%
GACAGCCACATTGACCCAAC+AGG + Chr7:43907574-43907593 MsG0780038307.01.T01:CDS 55.0%
GCCACATTGACCCAACAGGA+TGG + Chr7:43907578-43907597 MsG0780038307.01.T01:CDS 55.0%
GTCCGCTGTTGGGGACATAA+AGG + Chr7:43906628-43906647 MsG0780038307.01.T01:CDS 55.0%
TCAGACCTTAAGCCCGTTGC+GGG + Chr7:43907481-43907500 MsG0780038307.01.T01:CDS 55.0%
TGAGTGGGATGCTGCGAGTA+AGG + Chr7:43907603-43907622 MsG0780038307.01.T01:CDS 55.0%
! TCGCTGCGCCTGCTGTATTT+TGG - Chr7:43907165-43907184 None:intergenic 55.0%
! TTGGTTGGCCATGGGCTTTC+GGG - Chr7:43907377-43907396 None:intergenic 55.0%
!! GAAAGGCGTCAATGCGGCAA+CGG - Chr7:43907237-43907256 None:intergenic 55.0%
!! GTTTTGATGGAGCCCGCAAC+GGG - Chr7:43907496-43907515 None:intergenic 55.0%
!! TGGTTTTGCAGCTGCGGTTG+GGG + Chr7:43907111-43907130 MsG0780038307.01.T01:intron 55.0%
!!! AGGCTTTTGGAGTCCGCTGT+TGG + Chr7:43906617-43906636 MsG0780038307.01.T01:CDS 55.0%
!!! CTGGTTTTGCAGCTGCGGTT+GGG + Chr7:43907110-43907129 MsG0780038307.01.T01:intron 55.0%
!!! GCTTTTGGAGTCCGCTGTTG+GGG + Chr7:43906619-43906638 MsG0780038307.01.T01:CDS 55.0%
!!! GGCTTTTGGAGTCCGCTGTT+GGG + Chr7:43906618-43906637 MsG0780038307.01.T01:CDS 55.0%
!!! TCTGGTTTTGCAGCTGCGGT+TGG + Chr7:43907109-43907128 MsG0780038307.01.T01:intron 55.0%
ACAGGGGTGGCCTTTACCGA+AGG + Chr7:43907790-43907809 MsG0780038307.01.T01:CDS 60.0%
CCCACTCAGCCCATCCTGTT+GGG - Chr7:43907591-43907610 None:intergenic 60.0%
CTCTTGGCAGTACCAGCACC+TGG - Chr7:43907673-43907692 None:intergenic 60.0%
GACCTGGGTCTTCTCGACCT+TGG - Chr7:43907417-43907436 None:intergenic 60.0%
GCCAAGAGAGTCACTTGGCC+AGG + Chr7:43907685-43907704 MsG0780038307.01.T01:CDS 60.0%
GGGAGCTGTGGTGAGGTGAA+AGG - Chr7:43906066-43906085 None:intergenic 60.0%
GGGCCACCAACTTGCACTTC+TGG - Chr7:43907357-43907376 None:intergenic 60.0%
GTGGTAGCTCAGGATGGGAG+TGG + Chr7:43906659-43906678 MsG0780038307.01.T01:CDS 60.0%
TCCCACTCAGCCCATCCTGT+TGG - Chr7:43907592-43907611 None:intergenic 60.0%
TTGCAGCTGCGGTTGGGGAT+GGG + Chr7:43907116-43907135 MsG0780038307.01.T01:intron 60.0%
TTTGCAGCTGCGGTTGGGGA+TGG + Chr7:43907115-43907134 MsG0780038307.01.T01:intron 60.0%
! CAGGCAGTGGCTCTACGTGT+CGG + Chr7:43907190-43907209 MsG0780038307.01.T01:CDS 60.0%
!! ACCCAACAGGATGGGCTGAG+TGG + Chr7:43907587-43907606 MsG0780038307.01.T01:CDS 60.0%
!! CCCAACAGGATGGGCTGAGT+GGG + Chr7:43907588-43907607 MsG0780038307.01.T01:CDS 60.0%
CGACACGTAGAGCCACTGCC+TGG - Chr7:43907192-43907211 None:intergenic 65.0%
GCCCAAGGTCGAGAAGACCC+AGG + Chr7:43907412-43907431 MsG0780038307.01.T01:CDS 65.0%
! TGGAGCCCGCAACGGGCTTA+AGG - Chr7:43907489-43907508 None:intergenic 65.0%
!! GTTGGTGGCCCGAAAGCCCA+TGG + Chr7:43907366-43907385 MsG0780038307.01.T01:CDS 65.0%
! AGCAGGCGCAGCGAAGCACC+AGG + Chr7:43907171-43907190 MsG0780038307.01.T01:CDS 70.0%
! CGCAGCGAAGCACCAGGCAG+TGG + Chr7:43907177-43907196 MsG0780038307.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr7 gene 43905819 43908187 43905819 ID=MsG0780038307.01;Name=MsG0780038307.01
Chr7 mRNA 43905819 43908187 43905819 ID=MsG0780038307.01.T01;Parent=MsG0780038307.01;Name=MsG0780038307.01.T01;_AED=0.48;_eAED=0.48;_QI=114|1|1|1|1|1|2|368|554
Chr7 exon 43905819 43906899 43905819 ID=MsG0780038307.01.T01:exon:15742;Parent=MsG0780038307.01.T01
Chr7 exon 43907122 43908187 43907122 ID=MsG0780038307.01.T01:exon:15743;Parent=MsG0780038307.01.T01
Chr7 five_prime_UTR 43905819 43905932 43905819 ID=MsG0780038307.01.T01:five_prime_utr;Parent=MsG0780038307.01.T01
Chr7 CDS 43905933 43906899 43905933 ID=MsG0780038307.01.T01:cds;Parent=MsG0780038307.01.T01
Chr7 CDS 43907122 43907819 43907122 ID=MsG0780038307.01.T01:cds;Parent=MsG0780038307.01.T01
Chr7 three_prime_UTR 43907820 43908187 43907820 ID=MsG0780038307.01.T01:three_prime_utr;Parent=MsG0780038307.01.T01
Gene Sequence

>MsG0780038307.01.T01

ATGGCTAGTCAACAATCTTTGCTAGACAAGCCTAGTAAATCCCTTCCCAAAACTTTCTGGTTAATCCTCTCTTTAGTTGCTATCATAAGCTCATCAGCCCTTATTTTTACTCATCTCAAGAAACCAATCTCCTTTCACCTCACCACAGCTCCCCATGTTTACTGTGAACATGCTGTCGATGCAAAATCGTGTTTAGCTCATGTATCAGAAGTATCTCACGTCCCAACTTTGGTCACCACAAAAGACCAAAGGTTGCACGTACTCTTGTCCTTATTAACCAAGTCCACCGCACATATTCAAAATGCCATGGACACAGCTAATGTTATCAAACGCCGAATTAATAGCCCTAGAGAAGAAATTGCTTTGAGTGACTGTGAACAACTAATGGACTTGTCCATGAACAGAATTTGGGACTCGATGTTAAAGCTAACAACAAATAAAATTGACTCACATCAAGATGCACATACATGGCTAAGCAGTGTGCTCACTAACCATGCAACTTGCTTGGATGGATTAGAAGGTACATCTCGGGTCGTTATGGAAAATGACCTTCAAGACTTGATATCCAGAGCTAGATCTTCTCTAGCTGTGTTTCTTGTTGTTTTTCCTCAAAAGGATCGTGACCAATTCATTGATGATACGTTGATTGGCGAATTTCCATCGTGGGTTACAAGCAAAGATAGGAGGCTTTTGGAGTCCGCTGTTGGGGACATAAAGGCAAATGTTGTGGTAGCTCAGGATGGGAGTGGCAAGTTCAAGACTGTGGCTGAGGGTGTAGCATCTGCACCTGACAACGGTAAGACAAAGTATGTTATCTATGTGAAAAAGGGAACATACAAAGAGAACATAGAAATTGGTTCGAAAAAAACAAATGTGATGCTCGTTGGTGATGGTATGGATGCAACAATAATCACAGGCAACTTAAATTTCATCGATGGCACAACGACCTTCAAAAGTTCAACTGTCGCTGCGGTTGGGGATGGGTTTATAGCACAAGACATTTGGTTCCAAAATACAGCAGGCGCAGCGAAGCACCAGGCAGTGGCTCTACGTGTCGGCTCTGACCAATCTGTCATCAACCGTTGCCGCATTGACGCCTTTCAAGACACTCTTTATGCACACTCCAATAGGCAATTTTACCGTGACTCCGTCATTACAGGTACCATTGACTTCATCTTTGGAAACGCAGCTGTTGTGTTCCAGAAGTGCAAGTTGGTGGCCCGAAAGCCCATGGCCAACCAAAACAACATGTTTACAGCCCAAGGTCGAGAAGACCCAGGTCAAAACACAGGAACTTCAATTCAACAATGTGACCTAACACCAAGTTCAGACCTTAAGCCCGTTGCGGGCTCCATCAAAACATTCCTGGGTCGCCCATGGAAGAAATATTCCAGGACTGTTGTGATGCAATCCTTTCTGGACAGCCACATTGACCCAACAGGATGGGCTGAGTGGGATGCTGCGAGTAAGGACTTTCTGCAAACATTGTATTACGGAGAGTACATGAACAACGGACCAGGTGCTGGTACTGCCAAGAGAGTCACTTGGCCAGGTTATCATGTCATCAAAACTGCTGCAGAGGCTAGCAAGTTTACAGTAGCGCAACTAATCCAAGGAAATGTTTGGTTGAAGAACACAGGGGTGGCCTTTACCGAAGGCTTGTAA

Protein sequence

>MsG0780038307.01.T01

MASQQSLLDKPSKSLPKTFWLILSLVAIISSSALIFTHLKKPISFHLTTAPHVYCEHAVDAKSCLAHVSEVSHVPTLVTTKDQRLHVLLSLLTKSTAHIQNAMDTANVIKRRINSPREEIALSDCEQLMDLSMNRIWDSMLKLTTNKIDSHQDAHTWLSSVLTNHATCLDGLEGTSRVVMENDLQDLISRARSSLAVFLVVFPQKDRDQFIDDTLIGEFPSWVTSKDRRLLESAVGDIKANVVVAQDGSGKFKTVAEGVASAPDNGKTKYVIYVKKGTYKENIEIGSKKTNVMLVGDGMDATIITGNLNFIDGTTTFKSSTVAAVGDGFIAQDIWFQNTAGAAKHQAVALRVGSDQSVINRCRIDAFQDTLYAHSNRQFYRDSVITGTIDFIFGNAAVVFQKCKLVARKPMANQNNMFTAQGREDPGQNTGTSIQQCDLTPSSDLKPVAGSIKTFLGRPWKKYSRTVVMQSFLDSHIDPTGWAEWDAASKDFLQTLYYGEYMNNGPGAGTAKRVTWPGYHVIKTAAEASKFTVAQLIQGNVWLKNTGVAFTEGL*