Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023658.01.T01 | XP_013447054.1 | 98.026 | 456 | 9 | 0 | 1 | 456 | 1 | 456 | 0 | 920 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023658.01.T01 | Q9FN67 | 62.889 | 450 | 152 | 6 | 16 | 454 | 9 | 454 | 0 | 567 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048347.01 | MsG0480023658.01 | 0.800808 | 1.211160e-48 | 5.692553e-46 |
| MsG0180002274.01 | MsG0480023658.01 | 0.831840 | 1.328494e-55 | 1.459126e-52 |
| MsG0180003248.01 | MsG0480023658.01 | 0.843131 | 1.691880e-58 | 2.621275e-55 |
| MsG0180003249.01 | MsG0480023658.01 | 0.832289 | 1.029010e-55 | 1.144927e-52 |
| MsG0180003250.01 | MsG0480023658.01 | 0.826507 | 2.612177e-54 | 2.454535e-51 |
| MsG0180003338.01 | MsG0480023658.01 | 0.842832 | 2.031795e-58 | 3.118618e-55 |
| MsG0180005356.01 | MsG0480023658.01 | 0.808052 | 3.743534e-50 | 2.118760e-47 |
| MsG0480021031.01 | MsG0480023658.01 | 0.834918 | 2.269965e-56 | 2.732872e-53 |
| MsG0480022592.01 | MsG0480023658.01 | 0.800248 | 1.575109e-48 | 7.298885e-46 |
| MsG0480023349.01 | MsG0480023658.01 | 0.828221 | 1.013926e-54 | 1.001477e-51 |
| MsG0480023658.01 | MsG0580028909.01 | 0.830537 | 2.777112e-55 | 2.934226e-52 |
| MsG0480023658.01 | MsG0780038939.01 | 0.820413 | 6.950288e-53 | 5.495985e-50 |
| MsG0480023658.01 | MsG0780041176.01 | 0.817992 | 2.473579e-52 | 1.828943e-49 |
| MsG0480023658.01 | MsG0780041177.01 | 0.805721 | 1.164174e-49 | 6.204489e-47 |
| MsG0480023658.01 | MsG0780041316.01 | 0.808058 | 3.731836e-50 | 2.112484e-47 |
| MsG0480023658.01 | MsG0780041574.01 | 0.857423 | 1.648777e-62 | 4.067008e-59 |
| MsG0480023658.01 | MsG0880042740.01 | 0.804639 | 1.961757e-49 | 1.016721e-46 |
| MsG0480023658.01 | MsG0880045477.01 | 0.804110 | 2.528401e-49 | 1.292710e-46 |
| MsG0380015834.01 | MsG0480023658.01 | 0.842375 | 2.686912e-58 | 4.066131e-55 |
| MsG0380016839.01 | MsG0480023658.01 | 0.811471 | 6.887591e-51 | 4.267185e-48 |
| MsG0380017151.01 | MsG0480023658.01 | 0.819311 | 1.241155e-52 | 9.516634e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023658.01.T01 | MTR_8g098485 | 98.026 | 456 | 9 | 0 | 1 | 456 | 1 | 456 | 0.0 | 920 |
| MsG0480023658.01.T01 | MTR_7g088170 | 30.901 | 466 | 280 | 13 | 17 | 452 | 16 | 469 | 3.98e-65 | 217 |
| MsG0480023658.01.T01 | MTR_4g130970 | 23.222 | 478 | 276 | 18 | 20 | 453 | 8 | 438 | 6.80e-20 | 92.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023658.01.T01 | AT5G41330 | 62.889 | 450 | 152 | 6 | 16 | 454 | 9 | 454 | 0.0 | 567 |
| MsG0480023658.01.T01 | AT5G41330 | 62.889 | 450 | 152 | 6 | 16 | 454 | 9 | 454 | 0.0 | 567 |
| MsG0480023658.01.T01 | AT3G09030 | 32.222 | 450 | 282 | 12 | 20 | 453 | 10 | 452 | 2.28e-64 | 214 |
| MsG0480023658.01.T01 | AT4G30940 | 28.662 | 314 | 190 | 12 | 20 | 316 | 8 | 304 | 1.59e-19 | 90.9 |
| MsG0480023658.01.T01 | AT2G24240 | 25.383 | 457 | 287 | 18 | 20 | 451 | 8 | 435 | 3.26e-19 | 90.1 |
Find 115 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGGTCCTTCTGGTGTTTC+TGG | 0.144577 | 4:-88172737 | MsG0480023658.01.T01:CDS |
| AGGAGAGTCTCTTCCGTTTA+AGG | 0.149332 | 4:+88173234 | None:intergenic |
| CATAATCTGTTGATGGCTTC+TGG | 0.224547 | 4:-88172767 | MsG0480023658.01.T01:CDS |
| CGGGTTACAGATTCTTGATT+TGG | 0.229474 | 4:-88173038 | MsG0480023658.01.T01:CDS |
| GCGTTAGAATTGTTGATTTC+CGG | 0.235110 | 4:+88173131 | None:intergenic |
| AACAATTCTAACGCACTTTA+CGG | 0.238094 | 4:-88173122 | MsG0480023658.01.T01:CDS |
| AGGAGGAGAGAGAAAATTTC+AGG | 0.240586 | 4:+88173421 | None:intergenic |
| TTCGCTCTGGCAACGTTGTT+TGG | 0.244172 | 4:-88172694 | MsG0480023658.01.T01:CDS |
| ACGTGAAGGATACATTAAAT+TGG | 0.258798 | 4:-88173006 | MsG0480023658.01.T01:CDS |
| TTTCTGGTAATGTTAGGTTA+TGG | 0.263715 | 4:-88172721 | MsG0480023658.01.T01:CDS |
| TTCAAAATGCCACCCTTTGC+AGG | 0.268500 | 4:-88173613 | None:intergenic |
| GATGGGGAGGGTGCAAGATA+TGG | 0.270075 | 4:-88172366 | MsG0480023658.01.T01:CDS |
| TGTAGCAGTTTCTGATTCTT+TGG | 0.273093 | 4:-88172639 | MsG0480023658.01.T01:CDS |
| ATCCACTGCAGTTTCGTTGC+TGG | 0.283895 | 4:+88172797 | None:intergenic |
| CTGGTGTTTCTGGTAATGTT+AGG | 0.286245 | 4:-88172727 | MsG0480023658.01.T01:CDS |
| TAATGGGTTCTTCTAATAAC+AGG | 0.298676 | 4:-88172406 | MsG0480023658.01.T01:CDS |
| TTTAAAGTTGGTGTGAATTC+TGG | 0.298812 | 4:-88172608 | MsG0480023658.01.T01:CDS |
| GGGTCCCACAGTGGTCCTTC+TGG | 0.309924 | 4:-88172746 | MsG0480023658.01.T01:CDS |
| AAGATCACAAATTTGGCATT+TGG | 0.317695 | 4:-88172335 | MsG0480023658.01.T01:CDS |
| TTCTGGTAATGTTAGGTTAT+GGG | 0.332159 | 4:-88172720 | MsG0480023658.01.T01:CDS |
| AAGTTTGGCAGAGTTCTTCT+AGG | 0.335393 | 4:-88172268 | MsG0480023658.01.T01:CDS |
| ATCATAAACAACAATAGAAT+TGG | 0.345014 | 4:+88172892 | None:intergenic |
| AGGTGCTAAGATCACAAATT+TGG | 0.365344 | 4:-88172342 | MsG0480023658.01.T01:CDS |
| GGCTTTGGAAGGAAGATTAC+CGG | 0.366750 | 4:+88173384 | None:intergenic |
| TCGCTCTGGCAACGTTGTTT+GGG | 0.369820 | 4:-88172693 | MsG0480023658.01.T01:CDS |
| GTCTTGAAGATCAAAGGATT+TGG | 0.378770 | 4:+88173363 | None:intergenic |
| TTGTGAGCAATCTCCGTAAC+AGG | 0.383544 | 4:+88172854 | None:intergenic |
| TGGGAAAACGTAACGAAATC+TGG | 0.387225 | 4:-88172986 | MsG0480023658.01.T01:CDS |
| ATAATCTGTTGATGGCTTCT+GGG | 0.388853 | 4:-88172766 | MsG0480023658.01.T01:CDS |
| CGTGAAGGATACATTAAATT+GGG | 0.393397 | 4:-88173005 | MsG0480023658.01.T01:CDS |
| TTGTGAGATTGTTGAGAAGA+AGG | 0.396912 | 4:+88173480 | None:intergenic |
| TCACTTCAATTACCCTTAAA+CGG | 0.399134 | 4:-88173247 | MsG0480023658.01.T01:CDS |
| AAGATCAAAGGATTTGGCTT+TGG | 0.400270 | 4:+88173369 | None:intergenic |
| ATTGCTCACAATGAAATCTA+TGG | 0.400951 | 4:-88172842 | MsG0480023658.01.T01:CDS |
| GGAGAGTCTCTTCCGTTTAA+GGG | 0.401423 | 4:+88173235 | None:intergenic |
| CAGATTCTTGATTTGGAAAA+CGG | 0.403375 | 4:-88173031 | MsG0480023658.01.T01:CDS |
| CCCTTTGCAGGTTCTCATCC+CGG | 0.417766 | 4:-88173601 | MsG0480023658.01.T01:CDS |
| GCTATGGTCAGAGATTATAA+TGG | 0.421356 | 4:-88172423 | MsG0480023658.01.T01:CDS |
| TGAAAGTCATAATCTGTTGA+TGG | 0.423697 | 4:-88172774 | MsG0480023658.01.T01:CDS |
| GCAAGATTACAACCTTTGAT+TGG | 0.424151 | 4:-88173162 | MsG0480023658.01.T01:CDS |
| ATTTGCAATGTGTTGAAGTT+TGG | 0.431202 | 4:-88172283 | MsG0480023658.01.T01:CDS |
| GCATAGTTTGAGACCTGTTA+CGG | 0.441604 | 4:-88172867 | MsG0480023658.01.T01:CDS |
| TAGGATGTTCTTAACTAGAA+AGG | 0.445860 | 4:-88172306 | MsG0480023658.01.T01:CDS |
| GCCGGAGCTAATGATTTCTC+CGG | 0.449877 | 4:-88173058 | MsG0480023658.01.T01:CDS |
| ATGGGGAGGGTGCAAGATAT+GGG | 0.456498 | 4:-88172365 | MsG0480023658.01.T01:CDS |
| AGAATTTGGATTCAATGATA+AGG | 0.464890 | 4:+88173341 | None:intergenic |
| CTATGGTCAGAGATTATAAT+GGG | 0.475345 | 4:-88172422 | MsG0480023658.01.T01:CDS |
| TGGAATCGCTGAATCGATAT+CGG | 0.479074 | 4:+88172817 | None:intergenic |
| AAACAAACCCTAACCTCAGC+TGG | 0.481824 | 4:-88173511 | MsG0480023658.01.T01:CDS |
| ATCATTGAATCCAAATTCTA+CGG | 0.483688 | 4:-88173337 | MsG0480023658.01.T01:CDS |
| GGTTCAACCGTTCAAGCGAT+TGG | 0.484879 | 4:-88172965 | MsG0480023658.01.T01:CDS |
| TTGTTTAGGTGATAAGAGAA+AGG | 0.487551 | 4:-88172531 | MsG0480023658.01.T01:CDS |
| TCGCCGTCGTTAGCCGCCGC+CGG | 0.489018 | 4:-88173076 | MsG0480023658.01.T01:CDS |
| ATCACAAATTTGGCATTTGG+AGG | 0.491735 | 4:-88172332 | MsG0480023658.01.T01:CDS |
| TTGGATGCTATGTTTAAAGT+TGG | 0.491875 | 4:-88172620 | MsG0480023658.01.T01:CDS |
| AAGCTAACAAACATGTTCTC+AGG | 0.493602 | 4:+88172935 | None:intergenic |
| CAAGAAGAATTTGATGGGGA+GGG | 0.495473 | 4:-88172378 | MsG0480023658.01.T01:CDS |
| TTGAAAGGTTCAAATTGAGA+AGG | 0.496364 | 4:+88173280 | None:intergenic |
| AGGTTATGGGATGTTCGCTC+TGG | 0.496629 | 4:-88172707 | MsG0480023658.01.T01:CDS |
| CCTTTGATTGGTCACTTCGC+CGG | 0.499137 | 4:-88173150 | MsG0480023658.01.T01:CDS |
| TGAAAGGTTCAAATTGAGAA+GGG | 0.502836 | 4:+88173281 | None:intergenic |
| GGGGTGGTTGCAACGGTGGA+AGG | 0.505309 | 4:+88173214 | None:intergenic |
| CTCCTCTCTCTCCTCCGCAC+CGG | 0.507223 | 4:-88173403 | MsG0480023658.01.T01:CDS |
| ATTTGGCATTTGGAGGAAGT+AGG | 0.517181 | 4:-88172325 | MsG0480023658.01.T01:CDS |
| TCAAAGGATTTGGCTTTGGA+AGG | 0.521892 | 4:+88173373 | None:intergenic |
| TACCGGTGCGGAGGAGAGAG+AGG | 0.527787 | 4:+88173401 | None:intergenic |
| ACCGTAAGGGGTGGTTGCAA+CGG | 0.528739 | 4:+88173207 | None:intergenic |
| CCCGGAGAAATCATTAGCTC+CGG | 0.530387 | 4:+88173057 | None:intergenic |
| GGAGGAGAGAGAAAATTTCA+GGG | 0.531374 | 4:+88173422 | None:intergenic |
| GAAAGGTGTGTAGGGTGAAG+AGG | 0.538108 | 4:+88173456 | None:intergenic |
| ACCGTTGCAACCACCCCTTA+CGG | 0.539975 | 4:-88173208 | MsG0480023658.01.T01:CDS |
| GATAAGGTCTTGAAGATCAA+AGG | 0.542021 | 4:+88173357 | None:intergenic |
| TTGCACTAAGGGTGGTGATG+TGG | 0.542476 | 4:-88172447 | MsG0480023658.01.T01:CDS |
| TCAAGAAGAATTTGATGGGG+AGG | 0.543104 | 4:-88172379 | MsG0480023658.01.T01:CDS |
| TGCTGCCGTGTGCGACGTGG+AGG | 0.546307 | 4:+88173182 | None:intergenic |
| CCGGAGCTAATGATTTCTCC+GGG | 0.550287 | 4:-88173057 | MsG0480023658.01.T01:CDS |
| GTCTGATCTGAAAACACCAC+CGG | 0.555052 | 4:+88173582 | None:intergenic |
| GACGTGGAGGGAACCGTAAG+GGG | 0.556034 | 4:+88173195 | None:intergenic |
| TCTGTCGATGAAAGGTGTGT+AGG | 0.558071 | 4:+88173447 | None:intergenic |
| AGTTTGGCAGAGTTCTTCTA+GGG | 0.559490 | 4:-88172267 | MsG0480023658.01.T01:CDS |
| CGACGTGGAGGGAACCGTAA+GGG | 0.559572 | 4:+88173194 | None:intergenic |
| CTGTCGATGAAAGGTGTGTA+GGG | 0.561965 | 4:+88173448 | None:intergenic |
| CCGGCGAAGTGACCAATCAA+AGG | 0.568312 | 4:+88173150 | None:intergenic |
| GCGACGTGGAGGGAACCGTA+AGG | 0.579972 | 4:+88173193 | None:intergenic |
| TCAGGGTCTCTGTCGATGAA+AGG | 0.581587 | 4:+88173439 | None:intergenic |
| GAAATCATTAGCTCCGGCGG+CGG | 0.582033 | 4:+88173063 | None:intergenic |
| GGTTGCAAAATTGAAACACA+AGG | 0.582683 | 4:-88172482 | MsG0480023658.01.T01:CDS |
| TGAAGAACCAATCGCTTGAA+CGG | 0.585234 | 4:+88172958 | None:intergenic |
| CAAATCAAGAATCTGTAACC+CGG | 0.585490 | 4:+88173039 | None:intergenic |
| AACATAGTCACAATCGACGT+TGG | 0.585850 | 4:-88173556 | MsG0480023658.01.T01:CDS |
| GCTCCGGCGGCGGCTAACGA+CGG | 0.587441 | 4:+88173073 | None:intergenic |
| CCGGGATGAGAACCTGCAAA+GGG | 0.593697 | 4:+88173601 | None:intergenic |
| TTTGGAAAACGGTTACGTGA+AGG | 0.595270 | 4:-88173020 | MsG0480023658.01.T01:CDS |
| GGTTCCCTCCACGTCGCACA+CGG | 0.603417 | 4:-88173187 | MsG0480023658.01.T01:CDS |
| CGGTGCGGAGGAGAGAGAGG+AGG | 0.605383 | 4:+88173404 | None:intergenic |
| ATAGTCACAATCGACGTTGG+AGG | 0.605832 | 4:-88173553 | MsG0480023658.01.T01:CDS |
| GTTGCAAAATTGAAACACAA+GGG | 0.608708 | 4:-88172481 | MsG0480023658.01.T01:CDS |
| ACCGGGATGAGAACCTGCAA+AGG | 0.610342 | 4:+88173600 | None:intergenic |
| GCTGCCGTGTGCGACGTGGA+GGG | 0.616967 | 4:+88173183 | None:intergenic |
| GTAAGGGGTGGTTGCAACGG+TGG | 0.625552 | 4:+88173210 | None:intergenic |
| TTCCAGCAACGAAACTGCAG+TGG | 0.625740 | 4:-88172799 | MsG0480023658.01.T01:CDS |
| AACACCAGAAGGACCACTGT+GGG | 0.627063 | 4:+88172742 | None:intergenic |
| AAGGAAGATTACCGGTGCGG+AGG | 0.628049 | 4:+88173392 | None:intergenic |
| AGGGTGGTGATGTGGAGCTA+TGG | 0.628784 | 4:-88172439 | MsG0480023658.01.T01:CDS |
| GGAGAAATCATTAGCTCCGG+CGG | 0.638372 | 4:+88173060 | None:intergenic |
| TCTTGCTGCCGTGTGCGACG+TGG | 0.646818 | 4:+88173179 | None:intergenic |
| ATGGCTTCTGGGTCCCACAG+TGG | 0.650573 | 4:-88172755 | MsG0480023658.01.T01:CDS |
| GTGGAGGGAACCGTAAGGGG+TGG | 0.652569 | 4:+88173198 | None:intergenic |
| GGATGAGAACCTGCAAAGGG+TGG | 0.660246 | 4:+88173604 | None:intergenic |
| TGGAAGGAAGATTACCGGTG+CGG | 0.667763 | 4:+88173389 | None:intergenic |
| TTTGCAGGTTCTCATCCCGG+TGG | 0.693634 | 4:-88173598 | MsG0480023658.01.T01:CDS |
| ACATTACCAGAAACACCAGA+AGG | 0.701677 | 4:+88172731 | None:intergenic |
| GGGAGGGTGCAAGATATGGG+AGG | 0.711495 | 4:-88172362 | MsG0480023658.01.T01:CDS |
| TCTGATCTGAAAACACCACC+GGG | 0.715720 | 4:+88173583 | None:intergenic |
| AAACACCAGAAGGACCACTG+TGG | 0.737767 | 4:+88172741 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCATAAACAACAATAGAAT+TGG | + | Chr4:88172977-88172996 | None:intergenic | 20.0% |
| !!! | ATTTTCAAGAAGAATTTGAT+GGG | - | Chr4:88173483-88173502 | MsG0480023658.01.T01:CDS | 20.0% |
| ! | AGAATTTGGATTCAATGATA+AGG | + | Chr4:88172528-88172547 | None:intergenic | 25.0% |
| ! | ATCATTGAATCCAAATTCTA+CGG | - | Chr4:88172529-88172548 | MsG0480023658.01.T01:CDS | 25.0% |
| !! | TTTTGAATGGGAAAAAAGAA+GGG | - | Chr4:88173358-88173377 | MsG0480023658.01.T01:CDS | 25.0% |
| !!! | AATCAAGTTTTTTGCACTAA+GGG | - | Chr4:88173408-88173427 | MsG0480023658.01.T01:CDS | 25.0% |
| !!! | ATAAGAGAAAGGTTTTGAAT+GGG | - | Chr4:88173346-88173365 | MsG0480023658.01.T01:CDS | 25.0% |
| !!! | GATTTTCAAGAAGAATTTGA+TGG | - | Chr4:88173482-88173501 | MsG0480023658.01.T01:CDS | 25.0% |
| !!! | GTTTTGTTGTTTGAAACAAT+TGG | + | Chr4:88172339-88172358 | None:intergenic | 25.0% |
| !!! | TTTTCAAGAAGAATTTGATG+GGG | - | Chr4:88173484-88173503 | MsG0480023658.01.T01:CDS | 25.0% |
| AACAATTCTAACGCACTTTA+CGG | - | Chr4:88172744-88172763 | MsG0480023658.01.T01:CDS | 30.0% | |
| AAGATCACAAATTTGGCATT+TGG | - | Chr4:88173531-88173550 | MsG0480023658.01.T01:CDS | 30.0% | |
| ACGTGAAGGATACATTAAAT+TGG | - | Chr4:88172860-88172879 | MsG0480023658.01.T01:CDS | 30.0% | |
| ATTGCTCACAATGAAATCTA+TGG | - | Chr4:88173024-88173043 | MsG0480023658.01.T01:CDS | 30.0% | |
| ATTTGCAATGTGTTGAAGTT+TGG | - | Chr4:88173583-88173602 | MsG0480023658.01.T01:CDS | 30.0% | |
| CGTGAAGGATACATTAAATT+GGG | - | Chr4:88172861-88172880 | MsG0480023658.01.T01:CDS | 30.0% | |
| CTATGGTCAGAGATTATAAT+GGG | - | Chr4:88173444-88173463 | MsG0480023658.01.T01:CDS | 30.0% | |
| GTTGCAAAATTGAAACACAA+GGG | - | Chr4:88173385-88173404 | MsG0480023658.01.T01:CDS | 30.0% | |
| TAGGATGTTCTTAACTAGAA+AGG | - | Chr4:88173560-88173579 | MsG0480023658.01.T01:CDS | 30.0% | |
| TCACTTCAATTACCCTTAAA+CGG | - | Chr4:88172619-88172638 | MsG0480023658.01.T01:CDS | 30.0% | |
| TGAAAGGTTCAAATTGAGAA+GGG | + | Chr4:88172588-88172607 | None:intergenic | 30.0% | |
| TGAAAGTCATAATCTGTTGA+TGG | - | Chr4:88173092-88173111 | MsG0480023658.01.T01:CDS | 30.0% | |
| TTGAAAGGTTCAAATTGAGA+AGG | + | Chr4:88172589-88172608 | None:intergenic | 30.0% | |
| TTGTTTAGGTGATAAGAGAA+AGG | - | Chr4:88173335-88173354 | MsG0480023658.01.T01:CDS | 30.0% | |
| ! | AAAAATGCATGGGTTTGTTT+AGG | - | Chr4:88173321-88173340 | MsG0480023658.01.T01:CDS | 30.0% |
| ! | ATTGTTGAGAAGAAGGTTTT+TGG | + | Chr4:88172382-88172401 | None:intergenic | 30.0% |
| ! | TTCTGGTAATGTTAGGTTAT+GGG | - | Chr4:88173146-88173165 | MsG0480023658.01.T01:CDS | 30.0% |
| ! | TTGGATGCTATGTTTAAAGT+TGG | - | Chr4:88173246-88173265 | MsG0480023658.01.T01:CDS | 30.0% |
| ! | TTTCTGGTAATGTTAGGTTA+TGG | - | Chr4:88173145-88173164 | MsG0480023658.01.T01:CDS | 30.0% |
| !! | CAGATTCTTGATTTGGAAAA+CGG | - | Chr4:88172835-88172854 | MsG0480023658.01.T01:CDS | 30.0% |
| !! | GTTTTGAATGGGAAAAAAGA+AGG | - | Chr4:88173357-88173376 | MsG0480023658.01.T01:CDS | 30.0% |
| !! | TAATGGGTTCTTCTAATAAC+AGG | - | Chr4:88173460-88173479 | MsG0480023658.01.T01:CDS | 30.0% |
| !! | TTTAAAGTTGGTGTGAATTC+TGG | - | Chr4:88173258-88173277 | MsG0480023658.01.T01:CDS | 30.0% |
| !!! | AGTGAGTTTTGAAGATTGAA+AGG | + | Chr4:88172604-88172623 | None:intergenic | 30.0% |
| !!! | GAATCAAGTTTTTTGCACTA+AGG | - | Chr4:88173407-88173426 | MsG0480023658.01.T01:CDS | 30.0% |
| !!! | GATAAGAGAAAGGTTTTGAA+TGG | - | Chr4:88173345-88173364 | MsG0480023658.01.T01:CDS | 30.0% |
| AAGCTAACAAACATGTTCTC+AGG | + | Chr4:88172934-88172953 | None:intergenic | 35.0% | |
| AATGGGAAAAAAGAAGGGTT+TGG | - | Chr4:88173363-88173382 | MsG0480023658.01.T01:CDS | 35.0% | |
| AGGTGCTAAGATCACAAATT+TGG | - | Chr4:88173524-88173543 | MsG0480023658.01.T01:CDS | 35.0% | |
| ATCACAAATTTGGCATTTGG+AGG | - | Chr4:88173534-88173553 | MsG0480023658.01.T01:CDS | 35.0% | |
| CAAATCAAGAATCTGTAACC+CGG | + | Chr4:88172830-88172849 | None:intergenic | 35.0% | |
| GATAAGGTCTTGAAGATCAA+AGG | + | Chr4:88172512-88172531 | None:intergenic | 35.0% | |
| GCAAGATTACAACCTTTGAT+TGG | - | Chr4:88172704-88172723 | MsG0480023658.01.T01:CDS | 35.0% | |
| GCTATGGTCAGAGATTATAA+TGG | - | Chr4:88173443-88173462 | MsG0480023658.01.T01:CDS | 35.0% | |
| GGTTGCAAAATTGAAACACA+AGG | - | Chr4:88173384-88173403 | MsG0480023658.01.T01:CDS | 35.0% | |
| GTCTTGAAGATCAAAGGATT+TGG | + | Chr4:88172506-88172525 | None:intergenic | 35.0% | |
| TGTAGCAGTTTCTGATTCTT+TGG | - | Chr4:88173227-88173246 | MsG0480023658.01.T01:CDS | 35.0% | |
| TTGTGAGATTGTTGAGAAGA+AGG | + | Chr4:88172389-88172408 | None:intergenic | 35.0% | |
| ! | AAGATCAAAGGATTTGGCTT+TGG | + | Chr4:88172500-88172519 | None:intergenic | 35.0% |
| ! | ATTTTCGATGCCGTAGAATT+TGG | + | Chr4:88172542-88172561 | None:intergenic | 35.0% |
| !! | ATAATCTGTTGATGGCTTCT+GGG | - | Chr4:88173100-88173119 | MsG0480023658.01.T01:CDS | 35.0% |
| !! | GAGTTCTGAGAAAAATGCAT+GGG | - | Chr4:88173311-88173330 | MsG0480023658.01.T01:CDS | 35.0% |
| !! | GCGTTAGAATTGTTGATTTC+CGG | + | Chr4:88172738-88172757 | None:intergenic | 35.0% |
| !! | TGAGTTCTGAGAAAAATGCA+TGG | - | Chr4:88173310-88173329 | MsG0480023658.01.T01:CDS | 35.0% |
| !! | TTCTGGTGAAGCGTTTTATA+TGG | - | Chr4:88173275-88173294 | MsG0480023658.01.T01:CDS | 35.0% |
| AACATAGTCACAATCGACGT+TGG | - | Chr4:88172310-88172329 | MsG0480023658.01.T01:CDS | 40.0% | |
| AAGTTTGGCAGAGTTCTTCT+AGG | - | Chr4:88173598-88173617 | MsG0480023658.01.T01:CDS | 40.0% | |
| ACATTACCAGAAACACCAGA+AGG | + | Chr4:88173138-88173157 | None:intergenic | 40.0% | |
| AGGAGGAGAGAGAAAATTTC+AGG | + | Chr4:88172448-88172467 | None:intergenic | 40.0% | |
| AGTTTGGCAGAGTTCTTCTA+GGG | - | Chr4:88173599-88173618 | MsG0480023658.01.T01:CDS | 40.0% | |
| ATTTGGCATTTGGAGGAAGT+AGG | - | Chr4:88173541-88173560 | MsG0480023658.01.T01:CDS | 40.0% | |
| CAAGAAGAATTTGATGGGGA+GGG | - | Chr4:88173488-88173507 | MsG0480023658.01.T01:CDS | 40.0% | |
| CGGGTTACAGATTCTTGATT+TGG | - | Chr4:88172828-88172847 | MsG0480023658.01.T01:CDS | 40.0% | |
| GGAGGAGAGAGAAAATTTCA+GGG | + | Chr4:88172447-88172466 | None:intergenic | 40.0% | |
| TCAAGAAGAATTTGATGGGG+AGG | - | Chr4:88173487-88173506 | MsG0480023658.01.T01:CDS | 40.0% | |
| TGAAGAACCAATCGCTTGAA+CGG | + | Chr4:88172911-88172930 | None:intergenic | 40.0% | |
| TGGAATCGCTGAATCGATAT+CGG | + | Chr4:88173052-88173071 | None:intergenic | 40.0% | |
| TGGGAAAACGTAACGAAATC+TGG | - | Chr4:88172880-88172899 | MsG0480023658.01.T01:CDS | 40.0% | |
| TTTGGAAAACGGTTACGTGA+AGG | - | Chr4:88172846-88172865 | MsG0480023658.01.T01:CDS | 40.0% | |
| ! | GCATAGTTTGAGACCTGTTA+CGG | - | Chr4:88172999-88173018 | MsG0480023658.01.T01:CDS | 40.0% |
| !! | CATAATCTGTTGATGGCTTC+TGG | - | Chr4:88173099-88173118 | MsG0480023658.01.T01:CDS | 40.0% |
| !! | CTGGTGTTTCTGGTAATGTT+AGG | - | Chr4:88173139-88173158 | MsG0480023658.01.T01:CDS | 40.0% |
| !! | TCAAAGGATTTGGCTTTGGA+AGG | + | Chr4:88172496-88172515 | None:intergenic | 40.0% |
| !!! | CAAGTTTTTTGCACTAAGGG+TGG | - | Chr4:88173411-88173430 | MsG0480023658.01.T01:CDS | 40.0% |
| AAACAAACCCTAACCTCAGC+TGG | - | Chr4:88172355-88172374 | MsG0480023658.01.T01:CDS | 45.0% | |
| AGGAGAGTCTCTTCCGTTTA+AGG | + | Chr4:88172635-88172654 | None:intergenic | 45.0% | |
| ATAGTCACAATCGACGTTGG+AGG | - | Chr4:88172313-88172332 | MsG0480023658.01.T01:CDS | 45.0% | |
| GGAGAGTCTCTTCCGTTTAA+GGG | + | Chr4:88172634-88172653 | None:intergenic | 45.0% | |
| GTCTGATCTGAAAACACCAC+CGG | + | Chr4:88172287-88172306 | None:intergenic | 45.0% | |
| TCTGATCTGAAAACACCACC+GGG | + | Chr4:88172286-88172305 | None:intergenic | 45.0% | |
| TTGTGAGCAATCTCCGTAAC+AGG | + | Chr4:88173015-88173034 | None:intergenic | 45.0% | |
| ! | CTGTCGATGAAAGGTGTGTA+GGG | + | Chr4:88172421-88172440 | None:intergenic | 45.0% |
| ! | TCTGTCGATGAAAGGTGTGT+AGG | + | Chr4:88172422-88172441 | None:intergenic | 45.0% |
| ! | TTTTGGTCCAGCTGAGGTTA+GGG | + | Chr4:88172365-88172384 | None:intergenic | 45.0% |
| !! | GGCTTTGGAAGGAAGATTAC+CGG | + | Chr4:88172485-88172504 | None:intergenic | 45.0% |
| !! | TTTTTGGTCCAGCTGAGGTT+AGG | + | Chr4:88172366-88172385 | None:intergenic | 45.0% |
| AAACACCAGAAGGACCACTG+TGG | + | Chr4:88173128-88173147 | None:intergenic | 50.0% | |
| AACACCAGAAGGACCACTGT+GGG | + | Chr4:88173127-88173146 | None:intergenic | 50.0% | |
| AGGTTATGGGATGTTCGCTC+TGG | - | Chr4:88173159-88173178 | MsG0480023658.01.T01:CDS | 50.0% | |
| AGTGGTCCTTCTGGTGTTTC+TGG | - | Chr4:88173129-88173148 | MsG0480023658.01.T01:CDS | 50.0% | |
| ATCCACTGCAGTTTCGTTGC+TGG | + | Chr4:88173072-88173091 | None:intergenic | 50.0% | |
| CCCGGAGAAATCATTAGCTC+CGG | + | Chr4:88172812-88172831 | None:intergenic | 50.0% | |
| CCGGAGCTAATGATTTCTCC+GGG | - | Chr4:88172809-88172828 | MsG0480023658.01.T01:CDS | 50.0% | |
| GCCGGAGCTAATGATTTCTC+CGG | - | Chr4:88172808-88172827 | MsG0480023658.01.T01:CDS | 50.0% | |
| GGAGAAATCATTAGCTCCGG+CGG | + | Chr4:88172809-88172828 | None:intergenic | 50.0% | |
| GGTTCAACCGTTCAAGCGAT+TGG | - | Chr4:88172901-88172920 | MsG0480023658.01.T01:CDS | 50.0% | |
| TCAGGGTCTCTGTCGATGAA+AGG | + | Chr4:88172430-88172449 | None:intergenic | 50.0% | |
| TCGCTCTGGCAACGTTGTTT+GGG | - | Chr4:88173173-88173192 | MsG0480023658.01.T01:CDS | 50.0% | |
| TGGAAGGAAGATTACCGGTG+CGG | + | Chr4:88172480-88172499 | None:intergenic | 50.0% | |
| TTCCAGCAACGAAACTGCAG+TGG | - | Chr4:88173067-88173086 | MsG0480023658.01.T01:CDS | 50.0% | |
| TTCGCTCTGGCAACGTTGTT+TGG | - | Chr4:88173172-88173191 | MsG0480023658.01.T01:CDS | 50.0% | |
| ! | ATGGGGAGGGTGCAAGATAT+GGG | - | Chr4:88173501-88173520 | MsG0480023658.01.T01:CDS | 50.0% |
| ! | CCTTTGATTGGTCACTTCGC+CGG | - | Chr4:88172716-88172735 | MsG0480023658.01.T01:CDS | 50.0% |
| ! | GAAAGGTGTGTAGGGTGAAG+AGG | + | Chr4:88172413-88172432 | None:intergenic | 50.0% |
| ! | TTGCACTAAGGGTGGTGATG+TGG | - | Chr4:88173419-88173438 | MsG0480023658.01.T01:CDS | 50.0% |
| !!! | GAAGGTTTTTGGTCCAGCTG+AGG | + | Chr4:88172371-88172390 | None:intergenic | 50.0% |
| AAGGAAGATTACCGGTGCGG+AGG | + | Chr4:88172477-88172496 | None:intergenic | 55.0% | |
| ACCGGGATGAGAACCTGCAA+AGG | + | Chr4:88172269-88172288 | None:intergenic | 55.0% | |
| ACCGTAAGGGGTGGTTGCAA+CGG | + | Chr4:88172662-88172681 | None:intergenic | 55.0% | |
| ACCGTTGCAACCACCCCTTA+CGG | - | Chr4:88172658-88172677 | MsG0480023658.01.T01:CDS | 55.0% | |
| CCCTTTGCAGGTTCTCATCC+CGG | - | Chr4:88172265-88172284 | MsG0480023658.01.T01:CDS | 55.0% | |
| CCGGCGAAGTGACCAATCAA+AGG | + | Chr4:88172719-88172738 | None:intergenic | 55.0% | |
| CCGGGATGAGAACCTGCAAA+GGG | + | Chr4:88172268-88172287 | None:intergenic | 55.0% | |
| GAAATCATTAGCTCCGGCGG+CGG | + | Chr4:88172806-88172825 | None:intergenic | 55.0% | |
| GGATGAGAACCTGCAAAGGG+TGG | + | Chr4:88172265-88172284 | None:intergenic | 55.0% | |
| TTTGCAGGTTCTCATCCCGG+TGG | - | Chr4:88172268-88172287 | MsG0480023658.01.T01:CDS | 55.0% | |
| ! | AGGGTGGTGATGTGGAGCTA+TGG | - | Chr4:88173427-88173446 | MsG0480023658.01.T01:CDS | 55.0% |
| ! | GATGGGGAGGGTGCAAGATA+TGG | - | Chr4:88173500-88173519 | MsG0480023658.01.T01:CDS | 55.0% |
| ATGGCTTCTGGGTCCCACAG+TGG | - | Chr4:88173111-88173130 | MsG0480023658.01.T01:CDS | 60.0% | |
| CGACGTGGAGGGAACCGTAA+GGG | + | Chr4:88172675-88172694 | None:intergenic | 60.0% | |
| GACGTGGAGGGAACCGTAAG+GGG | + | Chr4:88172674-88172693 | None:intergenic | 60.0% | |
| GTAAGGGGTGGTTGCAACGG+TGG | + | Chr4:88172659-88172678 | None:intergenic | 60.0% | |
| ! | GGGAGGGTGCAAGATATGGG+AGG | - | Chr4:88173504-88173523 | MsG0480023658.01.T01:CDS | 60.0% |
| CTCCTCTCTCTCCTCCGCAC+CGG | - | Chr4:88172463-88172482 | MsG0480023658.01.T01:CDS | 65.0% | |
| GCGACGTGGAGGGAACCGTA+AGG | + | Chr4:88172676-88172695 | None:intergenic | 65.0% | |
| GGGGTGGTTGCAACGGTGGA+AGG | + | Chr4:88172655-88172674 | None:intergenic | 65.0% | |
| GGGTCCCACAGTGGTCCTTC+TGG | - | Chr4:88173120-88173139 | MsG0480023658.01.T01:CDS | 65.0% | |
| GGTTCCCTCCACGTCGCACA+CGG | - | Chr4:88172679-88172698 | MsG0480023658.01.T01:CDS | 65.0% | |
| GTGGAGGGAACCGTAAGGGG+TGG | + | Chr4:88172671-88172690 | None:intergenic | 65.0% | |
| TACCGGTGCGGAGGAGAGAG+AGG | + | Chr4:88172468-88172487 | None:intergenic | 65.0% | |
| TCTTGCTGCCGTGTGCGACG+TGG | + | Chr4:88172690-88172709 | None:intergenic | 65.0% | |
| CGGTGCGGAGGAGAGAGAGG+AGG | + | Chr4:88172465-88172484 | None:intergenic | 70.0% | |
| GCTGCCGTGTGCGACGTGGA+GGG | + | Chr4:88172686-88172705 | None:intergenic | 70.0% | |
| TGCTGCCGTGTGCGACGTGG+AGG | + | Chr4:88172687-88172706 | None:intergenic | 70.0% | |
| GCTCCGGCGGCGGCTAACGA+CGG | + | Chr4:88172796-88172815 | None:intergenic | 75.0% | |
| TCGCCGTCGTTAGCCGCCGC+CGG | - | Chr4:88172790-88172809 | MsG0480023658.01.T01:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 88172259 | 88173629 | 88172259 | ID=MsG0480023658.01;Name=MsG0480023658.01 |
| Chr4 | mRNA | 88172259 | 88173629 | 88172259 | ID=MsG0480023658.01.T01;Parent=MsG0480023658.01;Name=MsG0480023658.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|456 |
| Chr4 | exon | 88172259 | 88173629 | 88172259 | ID=MsG0480023658.01.T01:exon:6465;Parent=MsG0480023658.01.T01 |
| Chr4 | CDS | 88172259 | 88173629 | 88172259 | ID=MsG0480023658.01.T01:cds;Parent=MsG0480023658.01.T01 |
| Gene Sequence |
| Protein sequence |
