Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003338.01.T01 | XP_013467980.1 | 96.429 | 280 | 10 | 0 | 1 | 280 | 1 | 280 | 0 | 548 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003338.01.T01 | A0A072VJN9 | 96.429 | 280 | 10 | 0 | 1 | 280 | 1 | 280 | 0.0 | 548 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048347.01 | MsG0180003338.01 | 0.818145 | 2.283569e-52 | 1.695557e-49 |
| MsG0080048352.01 | MsG0180003338.01 | 0.813371 | 2.647994e-51 | 1.726163e-48 |
| MsG0180001533.01 | MsG0180003338.01 | 0.802846 | 4.622134e-49 | 2.287901e-46 |
| MsG0180002274.01 | MsG0180003338.01 | 0.847706 | 9.756888e-60 | 1.749218e-56 |
| MsG0180003248.01 | MsG0180003338.01 | 0.833228 | 6.014771e-56 | 6.883490e-53 |
| MsG0180003249.01 | MsG0180003338.01 | 0.842717 | 2.180064e-58 | 3.334048e-55 |
| MsG0180003250.01 | MsG0180003338.01 | 0.834474 | 2.935795e-56 | 3.487891e-53 |
| MsG0180003338.01 | MsG0180003348.01 | 0.897766 | 1.022482e-76 | 1.172728e-72 |
| MsG0180003338.01 | MsG0180005356.01 | 0.827911 | 1.204160e-54 | 1.178640e-51 |
| MsG0180003338.01 | MsG0180005358.01 | 0.816145 | 6.431915e-52 | 4.521233e-49 |
| MsG0180003338.01 | MsG0280007911.01 | 0.805908 | 1.063765e-49 | 5.696278e-47 |
| MsG0180003338.01 | MsG0280008405.01 | 0.834448 | 2.979298e-56 | 3.536893e-53 |
| MsG0180003338.01 | MsG0280010802.01 | 0.812327 | 4.483298e-51 | 2.842138e-48 |
| MsG0180003338.01 | MsG0280011165.01 | 0.804111 | 2.526910e-49 | 1.291995e-46 |
| MsG0180003338.01 | MsG0280011203.01 | 0.802828 | 4.662319e-49 | 2.306827e-46 |
| MsG0180003338.01 | MsG0380013272.01 | 0.816678 | 4.884881e-52 | 3.484088e-49 |
| MsG0180003338.01 | MsG0380015369.01 | 0.801128 | 1.042250e-48 | 4.938775e-46 |
| MsG0180003338.01 | MsG0380016839.01 | 0.807416 | 5.108110e-50 | 2.843554e-47 |
| MsG0180003338.01 | MsG0380017151.01 | 0.815946 | 7.122848e-52 | 4.979518e-49 |
| MsG0180003338.01 | MsG0380017550.01 | 0.805668 | 1.194548e-49 | 6.357323e-47 |
| MsG0180003338.01 | MsG0380017690.01 | 0.815532 | 8.811565e-52 | 6.090831e-49 |
| MsG0180003338.01 | MsG0480022311.01 | 0.828262 | 9.910993e-55 | 9.800400e-52 |
| MsG0180003338.01 | MsG0480023107.01 | 0.819923 | 8.999990e-53 | 7.020457e-50 |
| MsG0180003338.01 | MsG0480023658.01 | 0.842832 | 2.031795e-58 | 3.118618e-55 |
| MsG0180003338.01 | MsG0580024218.01 | 0.801844 | 7.434501e-49 | 3.587162e-46 |
| MsG0180003338.01 | MsG0580024220.01 | 0.804717 | 1.888802e-49 | 9.809702e-47 |
| MsG0180003338.01 | MsG0580024408.01 | 0.819159 | 1.344775e-52 | 1.026804e-49 |
| MsG0180003338.01 | MsG0580025440.01 | 0.820035 | 8.484400e-53 | 6.639029e-50 |
| MsG0180003338.01 | MsG0580027638.01 | 0.809359 | 1.967205e-50 | 1.152639e-47 |
| MsG0180003338.01 | MsG0580030133.01 | 0.800017 | 1.755647e-48 | 8.087729e-46 |
| MsG0180003338.01 | MsG0580030135.01 | 0.812298 | 4.548534e-51 | 2.881202e-48 |
| MsG0180003338.01 | MsG0580030145.01 | 0.807571 | 4.735705e-50 | 2.646768e-47 |
| MsG0180003338.01 | MsG0680031804.01 | 0.808115 | 3.628344e-50 | 2.057071e-47 |
| MsG0180003338.01 | MsG0680034255.01 | 0.805295 | 1.430302e-49 | 7.539279e-47 |
| MsG0180003338.01 | MsG0680034316.01 | 0.804165 | 2.462577e-49 | 1.260827e-46 |
| MsG0180003338.01 | MsG0680034317.01 | 0.826382 | 2.798056e-54 | 2.619963e-51 |
| MsG0180003338.01 | MsG0780036661.01 | 0.839177 | 1.851488e-57 | 2.536331e-54 |
| MsG0180003338.01 | MsG0780038860.01 | 0.862688 | 4.246186e-64 | 1.254329e-60 |
| MsG0180003338.01 | MsG0780038922.01 | 0.830966 | 2.180852e-55 | 2.333710e-52 |
| MsG0180003338.01 | MsG0780038939.01 | 0.858081 | 1.052158e-62 | 2.653472e-59 |
| MsG0180003338.01 | MsG0780039978.01 | 0.829169 | 5.981138e-55 | 6.073737e-52 |
| MsG0180003338.01 | MsG0780040805.01 | 0.808365 | 3.210213e-50 | 1.832135e-47 |
| MsG0180003338.01 | MsG0780040806.01 | 0.812867 | 3.415756e-51 | 2.196303e-48 |
| MsG0180003338.01 | MsG0780041316.01 | 0.832722 | 8.037392e-56 | 9.060299e-53 |
| MsG0180003338.01 | MsG0880042740.01 | 0.809879 | 1.521395e-50 | 9.037503e-48 |
| MsG0180003338.01 | MsG0880043828.01 | 0.819253 | 1.279716e-52 | 9.797353e-50 |
| MsG0180003338.01 | MsG0880045458.01 | 0.813573 | 2.390126e-51 | 1.566606e-48 |
| MsG0180003338.01 | MsG0880045677.01 | 0.803459 | 3.451366e-49 | 1.735328e-46 |
| MsG0180003338.01 | MsG0880046429.01 | 0.807483 | 4.943535e-50 | 2.756791e-47 |
| MsG0180003338.01 | MsG0880046863.01 | 0.804114 | 2.523062e-49 | 1.290137e-46 |
| MsG0180003338.01 | MsG0880047493.01 | 0.803708 | 3.064677e-49 | 1.550725e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003338.01.T01 | MTR_1g059890 | 96.429 | 280 | 10 | 0 | 1 | 280 | 1 | 280 | 0.0 | 548 |
| MsG0180003338.01.T01 | MTR_7g104725 | 42.903 | 310 | 122 | 13 | 3 | 280 | 1 | 287 | 2.15e-49 | 165 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003338.01.T01 | AT2G36220 | 35.836 | 293 | 137 | 11 | 1 | 274 | 1 | 261 | 6.72e-30 | 114 |
| MsG0180003338.01.T01 | AT3G52710 | 35.913 | 323 | 114 | 16 | 1 | 269 | 1 | 284 | 2.29e-29 | 113 |
Find 83 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGCGGAGTTAGGGTTTA+TGG | 0.148476 | 1:-60820337 | None:intergenic |
| TTGGTTCGCAAGCGACTTTC+CGG | 0.240044 | 1:-60820194 | None:intergenic |
| CACAGTGAACCGGCCGGTTT+GGG | 0.244338 | 1:+60820885 | MsG0180003338.01.T01:CDS |
| TTTGGATTTCTTCAAATTCT+TGG | 0.266541 | 1:-60820376 | None:intergenic |
| TCACCGAAGGTTTCTTGTAT+AGG | 0.328962 | 1:+60820558 | MsG0180003338.01.T01:CDS |
| TGAGAGTTTGAAGCGGAGTT+AGG | 0.333425 | 1:-60820345 | None:intergenic |
| TCACAGTGAACCGGCCGGTT+TGG | 0.337046 | 1:+60820884 | MsG0180003338.01.T01:CDS |
| ACCGATGATTGTCGTAGCTT+TGG | 0.337880 | 1:-60820394 | None:intergenic |
| AACGTAGCTTTCTGTGATTT+CGG | 0.349811 | 1:-60820420 | None:intergenic |
| GGGGCGGCGGTCCGAGTCAT+GGG | 0.355455 | 1:+60820929 | MsG0180003338.01.T01:CDS |
| ACTCACCACCGGAATCATTC+TGG | 0.363382 | 1:+60820232 | MsG0180003338.01.T01:CDS |
| GGAAACAACCTCGTGTTTCC+CGG | 0.372036 | 1:-60820480 | None:intergenic |
| ACCGCCGCCCCGACGCAAAC+CGG | 0.376641 | 1:-60820917 | None:intergenic |
| CGGGGCGGCGGTCCGAGTCA+TGG | 0.386264 | 1:+60820928 | MsG0180003338.01.T01:CDS |
| CTACGATATTATGCCACAAC+TGG | 0.399202 | 1:+60820128 | None:intergenic |
| GTCGGCGGCGACGCCGGATA+AGG | 0.399937 | 1:-60820172 | None:intergenic |
| CGCCGGATAAGGCGGAAACT+AGG | 0.401389 | 1:-60820161 | None:intergenic |
| TCGATGAGCCGGTTTGCGTC+GGG | 0.405928 | 1:+60820909 | MsG0180003338.01.T01:CDS |
| CCAATCGACGCGCTTCGTTT+CGG | 0.408547 | 1:-60820501 | None:intergenic |
| ACCCTAGTTTCCGCCTTATC+CGG | 0.413514 | 1:+60820159 | MsG0180003338.01.T01:CDS |
| TTCGATGAGCCGGTTTGCGT+CGG | 0.422675 | 1:+60820908 | MsG0180003338.01.T01:CDS |
| TTGGAGAGCCAGAATGATTC+CGG | 0.424913 | 1:-60820240 | None:intergenic |
| CCGGTTTGGGTTCGATGAGC+CGG | 0.433092 | 1:+60820898 | MsG0180003338.01.T01:CDS |
| GCCGGTTTGCGTCGGGGCGG+CGG | 0.460288 | 1:+60820916 | MsG0180003338.01.T01:CDS |
| CCGGCTCATCGAACCCAAAC+CGG | 0.463824 | 1:-60820898 | None:intergenic |
| GGCGGCGGAGACGCCGGTAG+CGG | 0.470902 | 1:-60820646 | None:intergenic |
| CGTTCAGAAATCGAATCTTC+CGG | 0.477249 | 1:+60820773 | MsG0180003338.01.T01:CDS |
| CAAGAAACCTTCGGTGAAGA+AGG | 0.478039 | 1:-60820552 | None:intergenic |
| GAGAGTTTGAAGCGGAGTTA+GGG | 0.479960 | 1:-60820344 | None:intergenic |
| TATCCGGCGTCGCCGCCGAC+CGG | 0.484565 | 1:+60820175 | MsG0180003338.01.T01:CDS |
| TTTCCGGTCGGCGGCGACGC+CGG | 0.485968 | 1:-60820178 | None:intergenic |
| GAGTCTTCCGCTTCATCCGT+TGG | 0.498389 | 1:-60820213 | None:intergenic |
| ACTCAGAGAAAGAAGAAATC+CGG | 0.500198 | 1:+60820699 | MsG0180003338.01.T01:CDS |
| TCGATTTCTTCCACCGCTAC+CGG | 0.504664 | 1:+60820633 | MsG0180003338.01.T01:CDS |
| TACGGTGAGTAGAACGGTTG+AGG | 0.510167 | 1:+60820854 | MsG0180003338.01.T01:CDS |
| GCAAACGCTTTCGATAAAAC+CGG | 0.511673 | 1:-60820718 | None:intergenic |
| GAGTAGAACGGTTGAGGAGA+CGG | 0.512770 | 1:+60820860 | MsG0180003338.01.T01:CDS |
| TCTGACGAGTTCTCAACCTT+CGG | 0.515544 | 1:-60820608 | None:intergenic |
| GCCGGATAAGGCGGAAACTA+GGG | 0.517835 | 1:-60820160 | None:intergenic |
| CCGAAACGAAGCGCGTCGAT+TGG | 0.519236 | 1:+60820501 | MsG0180003338.01.T01:CDS |
| AAACGAAGCGCGTCGATTGG+AGG | 0.522513 | 1:+60820504 | MsG0180003338.01.T01:CDS |
| AACGCAGGCGGCGGAGACGC+CGG | 0.526297 | 1:-60820652 | None:intergenic |
| CTGTCTTACAACGCAGGCGG+CGG | 0.526421 | 1:-60820661 | None:intergenic |
| TCCAAAGCTACGACAATCAT+CGG | 0.538829 | 1:+60820393 | MsG0180003338.01.T01:CDS |
| TGATTCGTTTCTTTCGTAGA+CGG | 0.541509 | 1:-60820295 | None:intergenic |
| TTCGTTGAAGAATCTTCCAC+CGG | 0.556764 | 1:-60820792 | None:intergenic |
| TTCACCTACTCCCCATGACT+CGG | 0.557110 | 1:-60820940 | None:intergenic |
| CGTCGGAATCATCACAAGCC+GGG | 0.559044 | 1:+60820462 | MsG0180003338.01.T01:CDS |
| CTACCTATACAAGAAACCTT+CGG | 0.562410 | 1:-60820561 | None:intergenic |
| GGCGGAGACGCCGGTAGCGG+TGG | 0.565616 | 1:-60820643 | None:intergenic |
| TTCGCAAGCGACTTTCCGGT+CGG | 0.571303 | 1:-60820190 | None:intergenic |
| CCAGTCGTATTCAGCATCGT+TGG | 0.573706 | 1:-60820259 | None:intergenic |
| CGGTCCGAGTCATGGGGAGT+AGG | 0.577370 | 1:+60820936 | MsG0180003338.01.T01:CDS |
| CCGTCGGAATCATCACAAGC+CGG | 0.577564 | 1:+60820461 | MsG0180003338.01.T01:CDS |
| ACGATGCTGAATACGACTGG+TGG | 0.582801 | 1:+60820262 | MsG0180003338.01.T01:CDS |
| GGAGACGGTTCACAGTGAAC+CGG | 0.584225 | 1:+60820875 | MsG0180003338.01.T01:CDS |
| CTCATCGAACCCAAACCGGC+CGG | 0.591441 | 1:-60820894 | None:intergenic |
| GGCGGCGACGCCGGATAAGG+CGG | 0.594812 | 1:-60820169 | None:intergenic |
| CCAACGATGCTGAATACGAC+TGG | 0.601276 | 1:+60820259 | MsG0180003338.01.T01:CDS |
| CGGAAGATTCGATTTCTGAA+CGG | 0.601779 | 1:-60820772 | None:intergenic |
| GCAAGCGACTTTCCGGTCGG+CGG | 0.604992 | 1:-60820187 | None:intergenic |
| GGGCGGCGGTCCGAGTCATG+GGG | 0.607070 | 1:+60820930 | MsG0180003338.01.T01:CDS |
| CGATGAGCCGGTTTGCGTCG+GGG | 0.607545 | 1:+60820910 | MsG0180003338.01.T01:CDS |
| TTGCGAACCAACGGATGAAG+CGG | 0.617781 | 1:+60820206 | MsG0180003338.01.T01:CDS |
| GCTACGTTAGCAGAAGCTAG+AGG | 0.623845 | 1:+60820435 | MsG0180003338.01.T01:CDS |
| CCGGCTTGTGATGATTCCGA+CGG | 0.625963 | 1:-60820461 | None:intergenic |
| GAAAGTCGCTTGCGAACCAA+CGG | 0.631019 | 1:+60820197 | MsG0180003338.01.T01:CDS |
| AGGAAGTACGGTGAGTAGAA+CGG | 0.631096 | 1:+60820848 | MsG0180003338.01.T01:CDS |
| CGATGCTGAATACGACTGGT+GGG | 0.634657 | 1:+60820263 | MsG0180003338.01.T01:CDS |
| AGATTTCTGTCTTACAACGC+AGG | 0.635115 | 1:-60820667 | None:intergenic |
| ACGGTTCACAGTGAACCGGC+CGG | 0.649294 | 1:+60820879 | MsG0180003338.01.T01:CDS |
| GAATCGTTGAGAGTTTGAAG+CGG | 0.651586 | 1:-60820352 | None:intergenic |
| CAGAAGCTAGAGGCTGCCGT+CGG | 0.668462 | 1:+60820445 | MsG0180003338.01.T01:CDS |
| TTTCTGTCTTACAACGCAGG+CGG | 0.688269 | 1:-60820664 | None:intergenic |
| TCAGAAATCGAATCTTCCGG+TGG | 0.689952 | 1:+60820776 | MsG0180003338.01.T01:CDS |
| TGAGCCGGTTTGCGTCGGGG+CGG | 0.691949 | 1:+60820913 | MsG0180003338.01.T01:CDS |
| CGAAACGTGGACATAACCGA+AGG | 0.692026 | 1:+60820592 | MsG0180003338.01.T01:CDS |
| GAGAGCCAGAATGATTCCGG+TGG | 0.695626 | 1:-60820237 | None:intergenic |
| TGAAGCGGAAGACTCACCAC+CGG | 0.695803 | 1:+60820221 | MsG0180003338.01.T01:CDS |
| ATCACAAGCCGGGAAACACG+AGG | 0.698693 | 1:+60820472 | MsG0180003338.01.T01:CDS |
| AGGGTTTCGAAATCCAGTTG+TGG | 0.701704 | 1:-60820141 | None:intergenic |
| GCAGCCACCGAATTCACACG+TGG | 0.735786 | 1:-60820971 | None:intergenic |
| GGTAGAGTAAGATCGAAACG+TGG | 0.778397 | 1:+60820579 | MsG0180003338.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TTTGGATTTCTTCAAATTCT+TGG | - | Chr1:60820379-60820398 | None:intergenic | 25.0% |
| ACGAAAAAGAAGAGAAACAA+TGG | + | Chr1:60820810-60820829 | MsG0180003338.01.T01:CDS | 30.0% | |
| AAACAATGGAAGAAAAACGC+GGG | + | Chr1:60820824-60820843 | MsG0180003338.01.T01:CDS | 35.0% | |
| AACGTAGCTTTCTGTGATTT+CGG | - | Chr1:60820423-60820442 | None:intergenic | 35.0% | |
| ACTCAGAGAAAGAAGAAATC+CGG | + | Chr1:60820699-60820718 | MsG0180003338.01.T01:CDS | 35.0% | |
| CTACCTATACAAGAAACCTT+CGG | - | Chr1:60820564-60820583 | None:intergenic | 35.0% | |
| GAAACAATGGAAGAAAAACG+CGG | + | Chr1:60820823-60820842 | MsG0180003338.01.T01:CDS | 35.0% | |
| TGATTCGTTTCTTTCGTAGA+CGG | - | Chr1:60820298-60820317 | None:intergenic | 35.0% | |
| AGATTTCTGTCTTACAACGC+AGG | - | Chr1:60820670-60820689 | None:intergenic | 40.0% | |
| CGGAAGATTCGATTTCTGAA+CGG | - | Chr1:60820775-60820794 | None:intergenic | 40.0% | |
| CGTTCAGAAATCGAATCTTC+CGG | + | Chr1:60820773-60820792 | MsG0180003338.01.T01:CDS | 40.0% | |
| GAATCGTTGAGAGTTTGAAG+CGG | - | Chr1:60820355-60820374 | None:intergenic | 40.0% | |
| GCAAACGCTTTCGATAAAAC+CGG | - | Chr1:60820721-60820740 | None:intergenic | 40.0% | |
| TCACCGAAGGTTTCTTGTAT+AGG | + | Chr1:60820558-60820577 | MsG0180003338.01.T01:CDS | 40.0% | |
| TCCAAAGCTACGACAATCAT+CGG | + | Chr1:60820393-60820412 | MsG0180003338.01.T01:CDS | 40.0% | |
| TTCGTTGAAGAATCTTCCAC+CGG | - | Chr1:60820795-60820814 | None:intergenic | 40.0% | |
| ! | TTTTGAACCTTCTTCACCGA+AGG | + | Chr1:60820545-60820564 | MsG0180003338.01.T01:CDS | 40.0% |
| !! | AAAGCGTTTGCTCGATTTTC+AGG | + | Chr1:60820730-60820749 | MsG0180003338.01.T01:CDS | 40.0% |
| AAAAACGCGGGAAGGAAGTA+CGG | + | Chr1:60820836-60820855 | MsG0180003338.01.T01:CDS | 45.0% | |
| AATGGAAGAAAAACGCGGGA+AGG | + | Chr1:60820828-60820847 | MsG0180003338.01.T01:CDS | 45.0% | |
| ACCGATGATTGTCGTAGCTT+TGG | - | Chr1:60820397-60820416 | None:intergenic | 45.0% | |
| AGGGTTTCGAAATCCAGTTG+TGG | - | Chr1:60820144-60820163 | None:intergenic | 45.0% | |
| CAAGAAACCTTCGGTGAAGA+AGG | - | Chr1:60820555-60820574 | None:intergenic | 45.0% | |
| GGTAGAGTAAGATCGAAACG+TGG | + | Chr1:60820579-60820598 | MsG0180003338.01.T01:CDS | 45.0% | |
| TCAGAAATCGAATCTTCCGG+TGG | + | Chr1:60820776-60820795 | MsG0180003338.01.T01:CDS | 45.0% | |
| TCTGACGAGTTCTCAACCTT+CGG | - | Chr1:60820611-60820630 | None:intergenic | 45.0% | |
| TGAAGCGGAGTTAGGGTTTA+TGG | - | Chr1:60820340-60820359 | None:intergenic | 45.0% | |
| TTGGAGAGCCAGAATGATTC+CGG | - | Chr1:60820243-60820262 | None:intergenic | 45.0% | |
| TTTCTGTCTTACAACGCAGG+CGG | - | Chr1:60820667-60820686 | None:intergenic | 45.0% | |
| ! | AGGAAGTACGGTGAGTAGAA+CGG | + | Chr1:60820848-60820867 | MsG0180003338.01.T01:CDS | 45.0% |
| ! | GAGAGTTTGAAGCGGAGTTA+GGG | - | Chr1:60820347-60820366 | None:intergenic | 45.0% |
| ! | TCTGAACGGTTTTCTCTCTC+CGG | - | Chr1:60820761-60820780 | None:intergenic | 45.0% |
| ! | TGAGAGTTTGAAGCGGAGTT+AGG | - | Chr1:60820348-60820367 | None:intergenic | 45.0% |
| ACCCTAGTTTCCGCCTTATC+CGG | + | Chr1:60820159-60820178 | MsG0180003338.01.T01:CDS | 50.0% | |
| ACGATGCTGAATACGACTGG+TGG | + | Chr1:60820262-60820281 | MsG0180003338.01.T01:CDS | 50.0% | |
| ACTCACCACCGGAATCATTC+TGG | + | Chr1:60820232-60820251 | MsG0180003338.01.T01:CDS | 50.0% | |
| CCAACGATGCTGAATACGAC+TGG | + | Chr1:60820259-60820278 | MsG0180003338.01.T01:CDS | 50.0% | |
| CCAGTCGTATTCAGCATCGT+TGG | - | Chr1:60820262-60820281 | None:intergenic | 50.0% | |
| CGAAACGTGGACATAACCGA+AGG | + | Chr1:60820592-60820611 | MsG0180003338.01.T01:CDS | 50.0% | |
| CGATGCTGAATACGACTGGT+GGG | + | Chr1:60820263-60820282 | MsG0180003338.01.T01:CDS | 50.0% | |
| GAAAGTCGCTTGCGAACCAA+CGG | + | Chr1:60820197-60820216 | MsG0180003338.01.T01:CDS | 50.0% | |
| GAGTAGAACGGTTGAGGAGA+CGG | + | Chr1:60820860-60820879 | MsG0180003338.01.T01:CDS | 50.0% | |
| GCTACGTTAGCAGAAGCTAG+AGG | + | Chr1:60820435-60820454 | MsG0180003338.01.T01:CDS | 50.0% | |
| GGAAACAACCTCGTGTTTCC+CGG | - | Chr1:60820483-60820502 | None:intergenic | 50.0% | |
| TACGGTGAGTAGAACGGTTG+AGG | + | Chr1:60820854-60820873 | MsG0180003338.01.T01:CDS | 50.0% | |
| TCGATTTCTTCCACCGCTAC+CGG | + | Chr1:60820633-60820652 | MsG0180003338.01.T01:CDS | 50.0% | |
| TTCACCTACTCCCCATGACT+CGG | - | Chr1:60820943-60820962 | None:intergenic | 50.0% | |
| TTGCGAACCAACGGATGAAG+CGG | + | Chr1:60820206-60820225 | MsG0180003338.01.T01:CDS | 50.0% | |
| ! | TTGGTTCGCAAGCGACTTTC+CGG | - | Chr1:60820197-60820216 | None:intergenic | 50.0% |
| !! | GCTCGATTTTCAGGAGTCAC+CGG | + | Chr1:60820739-60820758 | MsG0180003338.01.T01:CDS | 50.0% |
| ATCACAAGCCGGGAAACACG+AGG | + | Chr1:60820472-60820491 | MsG0180003338.01.T01:CDS | 55.0% | |
| CCAATCGACGCGCTTCGTTT+CGG | - | Chr1:60820504-60820523 | None:intergenic | 55.0% | |
| CCGTCGGAATCATCACAAGC+CGG | + | Chr1:60820461-60820480 | MsG0180003338.01.T01:CDS | 55.0% | |
| CGTCGGAATCATCACAAGCC+GGG | + | Chr1:60820462-60820481 | MsG0180003338.01.T01:CDS | 55.0% | |
| GAGAGCCAGAATGATTCCGG+TGG | - | Chr1:60820240-60820259 | None:intergenic | 55.0% | |
| GAGTCTTCCGCTTCATCCGT+TGG | - | Chr1:60820216-60820235 | None:intergenic | 55.0% | |
| GCCGGATAAGGCGGAAACTA+GGG | - | Chr1:60820163-60820182 | None:intergenic | 55.0% | |
| GGAGACGGTTCACAGTGAAC+CGG | + | Chr1:60820875-60820894 | MsG0180003338.01.T01:CDS | 55.0% | |
| TGAAGCGGAAGACTCACCAC+CGG | + | Chr1:60820221-60820240 | MsG0180003338.01.T01:CDS | 55.0% | |
| TTCGCAAGCGACTTTCCGGT+CGG | - | Chr1:60820193-60820212 | None:intergenic | 55.0% | |
| ! | CCGGCTTGTGATGATTCCGA+CGG | - | Chr1:60820464-60820483 | None:intergenic | 55.0% |
| !! | AAACGAAGCGCGTCGATTGG+AGG | + | Chr1:60820504-60820523 | MsG0180003338.01.T01:CDS | 55.0% |
| !! | TTCGATGAGCCGGTTTGCGT+CGG | + | Chr1:60820908-60820927 | MsG0180003338.01.T01:CDS | 55.0% |
| ACGGTTCACAGTGAACCGGC+CGG | + | Chr1:60820879-60820898 | MsG0180003338.01.T01:CDS | 60.0% | |
| CAGAAGCTAGAGGCTGCCGT+CGG | + | Chr1:60820445-60820464 | MsG0180003338.01.T01:CDS | 60.0% | |
| CCGGCTCATCGAACCCAAAC+CGG | - | Chr1:60820901-60820920 | None:intergenic | 60.0% | |
| CGCCGGATAAGGCGGAAACT+AGG | - | Chr1:60820164-60820183 | None:intergenic | 60.0% | |
| CTCATCGAACCCAAACCGGC+CGG | - | Chr1:60820897-60820916 | None:intergenic | 60.0% | |
| CTGTCTTACAACGCAGGCGG+CGG | - | Chr1:60820664-60820683 | None:intergenic | 60.0% | |
| TCACAGTGAACCGGCCGGTT+TGG | + | Chr1:60820884-60820903 | MsG0180003338.01.T01:CDS | 60.0% | |
| ! | CACAGTGAACCGGCCGGTTT+GGG | + | Chr1:60820885-60820904 | MsG0180003338.01.T01:CDS | 60.0% |
| ! | CCGAAACGAAGCGCGTCGAT+TGG | + | Chr1:60820501-60820520 | MsG0180003338.01.T01:CDS | 60.0% |
| !! | CCGGTTTGGGTTCGATGAGC+CGG | + | Chr1:60820898-60820917 | MsG0180003338.01.T01:CDS | 60.0% |
| !! | TCGATGAGCCGGTTTGCGTC+GGG | + | Chr1:60820909-60820928 | MsG0180003338.01.T01:CDS | 60.0% |
| CGGTCCGAGTCATGGGGAGT+AGG | + | Chr1:60820936-60820955 | MsG0180003338.01.T01:CDS | 65.0% | |
| GCAAGCGACTTTCCGGTCGG+CGG | - | Chr1:60820190-60820209 | None:intergenic | 65.0% | |
| !! | CGATGAGCCGGTTTGCGTCG+GGG | + | Chr1:60820910-60820929 | MsG0180003338.01.T01:CDS | 65.0% |
| !! | TGAGCCGGTTTGCGTCGGGG+CGG | + | Chr1:60820913-60820932 | MsG0180003338.01.T01:CDS | 70.0% |
| AACGCAGGCGGCGGAGACGC+CGG | - | Chr1:60820655-60820674 | None:intergenic | 75.0% | |
| ACCGCCGCCCCGACGCAAAC+CGG | - | Chr1:60820920-60820939 | None:intergenic | 75.0% | |
| GGCGGCGACGCCGGATAAGG+CGG | - | Chr1:60820172-60820191 | None:intergenic | 75.0% | |
| GGGCGGCGGTCCGAGTCATG+GGG | + | Chr1:60820930-60820949 | MsG0180003338.01.T01:CDS | 75.0% | |
| GGGGCGGCGGTCCGAGTCAT+GGG | + | Chr1:60820929-60820948 | MsG0180003338.01.T01:CDS | 75.0% | |
| GTCGGCGGCGACGCCGGATA+AGG | - | Chr1:60820175-60820194 | None:intergenic | 75.0% | |
| TATCCGGCGTCGCCGCCGAC+CGG | + | Chr1:60820175-60820194 | MsG0180003338.01.T01:CDS | 75.0% | |
| TTTCCGGTCGGCGGCGACGC+CGG | - | Chr1:60820181-60820200 | None:intergenic | 75.0% | |
| ! | CGGGGCGGCGGTCCGAGTCA+TGG | + | Chr1:60820928-60820947 | MsG0180003338.01.T01:CDS | 80.0% |
| ! | GGCGGCGGAGACGCCGGTAG+CGG | - | Chr1:60820649-60820668 | None:intergenic | 80.0% |
| !! | GGCGGAGACGCCGGTAGCGG+TGG | - | Chr1:60820646-60820665 | None:intergenic | 80.0% |
| !!! | GCCGGTTTGCGTCGGGGCGG+CGG | + | Chr1:60820916-60820935 | MsG0180003338.01.T01:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 60820138 | 60820980 | 60820138 | ID=MsG0180003338.01;Name=MsG0180003338.01 |
| Chr1 | mRNA | 60820138 | 60820980 | 60820138 | ID=MsG0180003338.01.T01;Parent=MsG0180003338.01;Name=MsG0180003338.01.T01;_AED=0.21;_eAED=0.21;_QI=0|-1|0|1|-1|1|1|0|280 |
| Chr1 | exon | 60820138 | 60820980 | 60820138 | ID=MsG0180003338.01.T01:exon:4102;Parent=MsG0180003338.01.T01 |
| Chr1 | CDS | 60820138 | 60820980 | 60820138 | ID=MsG0180003338.01.T01:cds;Parent=MsG0180003338.01.T01 |
| Gene Sequence |
| Protein sequence |
