Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023731.01.T01 | XP_013447269.1 | 95.745 | 188 | 5 | 2 | 1 | 187 | 1 | 186 | 1.83E-127 | 366 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023731.01.T01 | Q9FMW4 | 54.878 | 164 | 73 | 1 | 24 | 187 | 55 | 217 | 1.81E-58 | 185 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023731.01.T01 | A0A072TVV9 | 95.745 | 188 | 5 | 2 | 1 | 187 | 1 | 186 | 8.75e-128 | 366 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180003241.01 | MsG0480023731.01 | 0.827166 | 1.817509e-54 | 1.740791e-51 |
| MsG0380014913.01 | MsG0480023731.01 | 0.808379 | 3.188268e-50 | 1.820239e-47 |
| MsG0480023099.01 | MsG0480023731.01 | 0.803286 | 3.748118e-49 | 1.876116e-46 |
| MsG0480023731.01 | MsG0480023777.01 | 0.806250 | 9.012466e-50 | 4.868491e-47 |
| MsG0480023731.01 | MsG0580025769.01 | 0.805406 | 1.355906e-49 | 7.167609e-47 |
| MsG0480023731.01 | MsG0580028453.01 | 0.806253 | 8.998713e-50 | 4.861486e-47 |
| MsG0480023731.01 | MsG0580028526.01 | 0.821820 | 3.295013e-53 | 2.709840e-50 |
| MsG0480023731.01 | MsG0680031459.01 | 0.803042 | 4.209827e-49 | 2.094083e-46 |
| MsG0480023731.01 | MsG0680032899.01 | 0.829277 | 5.633686e-55 | 5.739742e-52 |
| MsG0480023731.01 | MsG0780040389.01 | 0.809968 | 1.455759e-50 | 8.667773e-48 |
| MsG0480023731.01 | MsG0780040516.01 | 0.808514 | 2.984010e-50 | 1.709579e-47 |
| MsG0480023731.01 | MsG0780040679.01 | 0.812171 | 4.848139e-51 | 3.060457e-48 |
| MsG0480023731.01 | MsG0780040758.01 | 0.815679 | 8.168592e-52 | 5.669452e-49 |
| MsG0480023731.01 | MsG0880043489.01 | 0.827079 | 1.906670e-54 | 1.821605e-51 |
| MsG0480023731.01 | MsG0880046731.01 | 0.804761 | 1.849883e-49 | 9.618226e-47 |
| MsG0380015209.01 | MsG0480023731.01 | 0.800456 | 1.429094e-48 | 6.657186e-46 |
| MsG0380015289.01 | MsG0480023731.01 | 0.822934 | 1.816138e-53 | 1.541734e-50 |
| MsG0280010378.01 | MsG0480023731.01 | 0.825943 | 3.558243e-54 | 3.290460e-51 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023731.01.T01 | MTR_8g100065 | 95.745 | 188 | 5 | 2 | 1 | 187 | 1 | 186 | 2.22e-131 | 366 |
| MsG0480023731.01.T01 | MTR_8g100065 | 97.093 | 172 | 5 | 0 | 16 | 187 | 37 | 208 | 1.11e-125 | 352 |
| MsG0480023731.01.T01 | MTR_6g077990 | 76.966 | 178 | 39 | 2 | 10 | 186 | 23 | 199 | 5.99e-95 | 275 |
| MsG0480023731.01.T01 | MTR_6g077990 | 79.290 | 169 | 33 | 2 | 19 | 186 | 31 | 198 | 1.23e-93 | 271 |
| MsG0480023731.01.T01 | MTR_6g077990 | 78.846 | 156 | 32 | 1 | 31 | 186 | 2 | 156 | 2.67e-87 | 253 |
| MsG0480023731.01.T01 | MTR_8g100065 | 93.893 | 131 | 5 | 2 | 1 | 130 | 1 | 129 | 1.86e-84 | 245 |
| MsG0480023731.01.T01 | MTR_8g100065 | 95.652 | 115 | 5 | 0 | 16 | 130 | 37 | 151 | 6.43e-79 | 232 |
| MsG0480023731.01.T01 | MTR_1g033750 | 53.261 | 184 | 85 | 1 | 3 | 186 | 41 | 223 | 9.74e-67 | 204 |
| MsG0480023731.01.T01 | MTR_1g114640 | 60.000 | 160 | 63 | 1 | 24 | 183 | 60 | 218 | 1.71e-63 | 196 |
| MsG0480023731.01.T01 | MTR_6g077990 | 79.130 | 115 | 22 | 2 | 19 | 132 | 31 | 144 | 1.17e-58 | 181 |
| MsG0480023731.01.T01 | MTR_1g114690 | 52.071 | 169 | 80 | 1 | 18 | 186 | 51 | 218 | 2.84e-56 | 177 |
| MsG0480023731.01.T01 | MTR_1g114690 | 51.497 | 167 | 80 | 1 | 18 | 184 | 51 | 216 | 7.20e-56 | 176 |
| MsG0480023731.01.T01 | MTR_1g114750 | 46.409 | 181 | 96 | 1 | 6 | 186 | 42 | 221 | 1.85e-55 | 175 |
| MsG0480023731.01.T01 | MTR_1g115130 | 52.667 | 150 | 70 | 1 | 37 | 186 | 46 | 194 | 1.11e-50 | 162 |
| MsG0480023731.01.T01 | MTR_1g114690 | 43.781 | 201 | 78 | 2 | 18 | 184 | 51 | 250 | 5.52e-49 | 159 |
| MsG0480023731.01.T01 | MTR_7g083570 | 41.975 | 162 | 93 | 1 | 23 | 184 | 115 | 275 | 4.16e-42 | 143 |
| MsG0480023731.01.T01 | MTR_3g100750 | 36.538 | 156 | 97 | 1 | 28 | 183 | 102 | 255 | 1.81e-39 | 135 |
| MsG0480023731.01.T01 | MTR_1g114640 | 60.185 | 108 | 42 | 1 | 24 | 131 | 60 | 166 | 3.63e-39 | 132 |
| MsG0480023731.01.T01 | MTR_8g069110 | 37.888 | 161 | 98 | 1 | 23 | 183 | 109 | 267 | 7.14e-39 | 134 |
| MsG0480023731.01.T01 | MTR_1g114680 | 60.000 | 110 | 43 | 1 | 75 | 184 | 53 | 161 | 9.58e-38 | 129 |
| MsG0480023731.01.T01 | MTR_2g076350 | 35.802 | 162 | 102 | 2 | 23 | 183 | 65 | 225 | 1.91e-31 | 114 |
| MsG0480023731.01.T01 | MTR_1g114690 | 50.442 | 113 | 55 | 1 | 18 | 130 | 51 | 162 | 6.79e-31 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023731.01.T01 | AT5G23370 | 54.878 | 164 | 73 | 1 | 24 | 187 | 55 | 217 | 1.84e-59 | 185 |
| MsG0480023731.01.T01 | AT5G08350 | 54.878 | 164 | 73 | 1 | 24 | 187 | 54 | 216 | 1.18e-58 | 183 |
| MsG0480023731.01.T01 | AT5G23350 | 54.658 | 161 | 72 | 1 | 24 | 184 | 55 | 214 | 8.40e-57 | 178 |
| MsG0480023731.01.T01 | AT5G23360 | 52.174 | 161 | 76 | 1 | 24 | 184 | 47 | 206 | 8.28e-55 | 173 |
| MsG0480023731.01.T01 | AT5G13200 | 39.506 | 162 | 97 | 1 | 23 | 184 | 101 | 261 | 1.78e-40 | 138 |
| MsG0480023731.01.T01 | AT1G28200 | 37.267 | 161 | 99 | 1 | 23 | 183 | 96 | 254 | 1.25e-39 | 135 |
| MsG0480023731.01.T01 | AT1G28200 | 37.267 | 161 | 99 | 1 | 23 | 183 | 96 | 254 | 1.25e-39 | 135 |
| MsG0480023731.01.T01 | AT4G01600 | 37.654 | 162 | 101 | 0 | 22 | 183 | 24 | 185 | 9.89e-39 | 131 |
| MsG0480023731.01.T01 | AT2G22475 | 35.625 | 160 | 101 | 1 | 24 | 183 | 134 | 291 | 1.28e-38 | 134 |
| MsG0480023731.01.T01 | AT4G01600 | 37.888 | 161 | 100 | 0 | 23 | 183 | 64 | 224 | 2.78e-38 | 131 |
| MsG0480023731.01.T01 | AT4G01600 | 39.456 | 147 | 89 | 0 | 37 | 183 | 73 | 219 | 1.11e-35 | 125 |
| MsG0480023731.01.T01 | AT5G13200 | 41.584 | 101 | 59 | 0 | 23 | 123 | 101 | 201 | 4.73e-24 | 94.4 |
| MsG0480023731.01.T01 | AT2G22475 | 33.333 | 117 | 76 | 1 | 24 | 140 | 134 | 248 | 8.79e-21 | 86.7 |
| MsG0480023731.01.T01 | AT4G40100 | 31.111 | 135 | 63 | 1 | 49 | 183 | 112 | 216 | 1.34e-19 | 83.2 |
Find 45 sgRNAs with CRISPR-Local
Find 81 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATGGAAATTTCTTATTTC+TGG | 0.091487 | 4:+89124231 | None:intergenic |
| CTCACGATGATTCTGAATTT+TGG | 0.150158 | 4:-89123032 | MsG0480023731.01.T01:CDS |
| ATCTATCTTCTTCTTCTTGT+AGG | 0.202658 | 4:-89124336 | MsG0480023731.01.T01:five_prime_UTR |
| TTTAGCAGTTGCAGTTTCTT+TGG | 0.245252 | 4:+89124051 | None:intergenic |
| CTTCTTCTTGTAGGTTTCAT+TGG | 0.252901 | 4:-89124327 | MsG0480023731.01.T01:five_prime_UTR |
| AGAAACTGCAACTGCTAAAA+TGG | 0.264589 | 4:-89124047 | MsG0480023731.01.T01:CDS |
| CAATGTGCAGTAGGGCTAAA+TGG | 0.279415 | 4:+89122948 | None:intergenic |
| AGTGTGAAGTTCTATGTAAA+TGG | 0.297354 | 4:-89122866 | MsG0480023731.01.T01:three_prime_UTR |
| GATGCAGAAGAGAAGGTTAT+TGG | 0.316549 | 4:+89123415 | None:intergenic |
| TCTGAAGGGTAAGTTGAGTT+TGG | 0.345403 | 4:-89123611 | MsG0480023731.01.T01:CDS |
| AATCCTACATGCAAAACTTC+TGG | 0.347012 | 4:+89123997 | None:intergenic |
| TTCAGAGTCTCTGATAGTTT+AGG | 0.396250 | 4:+89123628 | None:intergenic |
| CTGAAGGGTAAGTTGAGTTT+GGG | 0.410973 | 4:-89123610 | MsG0480023731.01.T01:CDS |
| ACAACAGCTGGTCCTATTGC+TGG | 0.416930 | 4:-89123484 | MsG0480023731.01.T01:CDS |
| TGAAGGGCAGAATGTGAATC+AGG | 0.430005 | 4:-89123082 | MsG0480023731.01.T01:CDS |
| ACCTTCTCTTCTGCATCAAC+GGG | 0.443671 | 4:-89123409 | MsG0480023731.01.T01:CDS |
| ATGAAAAGAACTCCAGCAAT+AGG | 0.446868 | 4:+89123472 | None:intergenic |
| TGTTATATCTTGCAAACAGC+TGG | 0.447335 | 4:+89124300 | None:intergenic |
| ATGAATTCTTCTACTTCTAC+AGG | 0.454002 | 4:-89124204 | MsG0480023731.01.T01:intron |
| TAATAATTACGTACCTTGTA+CGG | 0.463291 | 4:+89123370 | None:intergenic |
| AACCTTCTCTTCTGCATCAA+CGG | 0.469610 | 4:-89123410 | MsG0480023731.01.T01:CDS |
| AAAATCAAACAATGTGCAGT+AGG | 0.473818 | 4:+89122939 | None:intergenic |
| GGGCTAAATGGACATTGAAA+TGG | 0.476559 | 4:+89122960 | None:intergenic |
| GTGTGAAGTTCTATGTAAAT+GGG | 0.492938 | 4:-89122865 | MsG0480023731.01.T01:three_prime_UTR |
| TTTATGTTTGAGATGTACAT+AGG | 0.493478 | 4:-89122899 | MsG0480023731.01.T01:three_prime_UTR |
| GTAAGTTGAGTTTGGGTGCA+AGG | 0.498584 | 4:-89123603 | MsG0480023731.01.T01:CDS |
| AAGATAAAAGAAGTCAATGA+AGG | 0.502485 | 4:-89123099 | MsG0480023731.01.T01:CDS |
| TAGAAGAATTCATCAGTGAA+TGG | 0.512531 | 4:+89124214 | None:intergenic |
| AGAAGGAGAGAAAGTGTTGA+AGG | 0.521050 | 4:-89123527 | MsG0480023731.01.T01:CDS |
| ATAATACAAGAAGGTGGGAG+AGG | 0.525733 | 4:-89123580 | MsG0480023731.01.T01:CDS |
| TGTTACTTATACACAACAGC+TGG | 0.553623 | 4:-89123496 | MsG0480023731.01.T01:CDS |
| AAATTCATTGCAGTAAAACT+AGG | 0.557356 | 4:-89123652 | MsG0480023731.01.T01:intron |
| AAGAAGAAGATAGATAGAGA+TGG | 0.566356 | 4:+89124344 | None:intergenic |
| AAATCAAACAATGTGCAGTA+GGG | 0.570196 | 4:+89122940 | None:intergenic |
| TCCCGTTGATGCAGAAGAGA+AGG | 0.582493 | 4:+89123408 | None:intergenic |
| AGCACAAGAAAGCAACAACC+AGG | 0.598769 | 4:-89124024 | MsG0480023731.01.T01:CDS |
| GCAAGGATAATACAAGAAGG+TGG | 0.599451 | 4:-89123586 | MsG0480023731.01.T01:CDS |
| TAATACAAGAAGGTGGGAGA+GGG | 0.599558 | 4:-89123579 | MsG0480023731.01.T01:CDS |
| TAAACTATCAGAGACTCTGA+AGG | 0.601920 | 4:-89123626 | MsG0480023731.01.T01:CDS |
| GCATGTAGGATTCATGAACA+TGG | 0.604739 | 4:-89123986 | MsG0480023731.01.T01:intron |
| CAAGGATAATACAAGAAGGT+GGG | 0.615352 | 4:-89123585 | MsG0480023731.01.T01:CDS |
| AGATAAAAGAAGTCAATGAA+GGG | 0.635091 | 4:-89123098 | MsG0480023731.01.T01:CDS |
| GACGCGCAAGATACCGTACA+AGG | 0.636816 | 4:-89123383 | MsG0480023731.01.T01:intron |
| AAACTATCAGAGACTCTGAA+GGG | 0.658037 | 4:-89123625 | MsG0480023731.01.T01:CDS |
| GGTGCAAGGATAATACAAGA+AGG | 0.670404 | 4:-89123589 | MsG0480023731.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATCAATATTTTTTTTAG+GGG | - | Chr4:89123433-89123452 | MsG0480023731.01.T01:CDS | 10.0% |
| !!! | AACATTTTCAAGAATATTTT+TGG | - | Chr4:89123627-89123646 | MsG0480023731.01.T01:CDS | 15.0% |
| !!! | ATAATTTGGTTTATTGATTT+AGG | - | Chr4:89123905-89123924 | MsG0480023731.01.T01:intron | 15.0% |
| !!! | TTTTGAATGTAATTAATTGA+AGG | + | Chr4:89123033-89123052 | None:intergenic | 15.0% |
| !! | AAGAGAGAAAGAAAAAAAAA+AGG | + | Chr4:89123474-89123493 | None:intergenic | 20.0% |
| !!! | ATTTGTTGTATTAACTGTTT+CGG | - | Chr4:89124007-89124026 | MsG0480023731.01.T01:CDS | 20.0% |
| !!! | TTGATTTGCACTTTATAATT+TGG | - | Chr4:89123891-89123910 | MsG0480023731.01.T01:intron | 20.0% |
| ! | AAATTCATTGCAGTAAAACT+AGG | - | Chr4:89123531-89123550 | MsG0480023731.01.T01:CDS | 25.0% |
| ! | AAGATAAAAGAAGTCAATGA+AGG | - | Chr4:89124084-89124103 | MsG0480023731.01.T01:intron | 25.0% |
| ! | AATAGAATTGTAGTTGTTTG+TGG | - | Chr4:89124358-89124377 | MsG0480023731.01.T01:five_prime_UTR | 25.0% |
| ! | AGATAAAAGAAGTCAATGAA+GGG | - | Chr4:89124085-89124104 | MsG0480023731.01.T01:intron | 25.0% |
| ! | AGTTTGATATGTTAAAGTTG+AGG | + | Chr4:89123972-89123991 | None:intergenic | 25.0% |
| ! | ATACTACTAATATATTGACG+TGG | - | Chr4:89123089-89123108 | MsG0480023731.01.T01:CDS | 25.0% |
| ! | ATGTAATTAATTGAAGGTTG+TGG | + | Chr4:89123027-89123046 | None:intergenic | 25.0% |
| ! | TAATAATTACGTACCTTGTA+CGG | + | Chr4:89123816-89123835 | None:intergenic | 25.0% |
| ! | TATTTACCTCACAAATTAAC+TGG | - | Chr4:89123237-89123256 | MsG0480023731.01.T01:intron | 25.0% |
| !! | ACTACAAAATGCAACTTTTT+GGG | + | Chr4:89123742-89123761 | None:intergenic | 25.0% |
| !! | GAATGGAAATTTCTTATTTC+TGG | + | Chr4:89122955-89122974 | None:intergenic | 25.0% |
| !! | TAGATTAGTTATGTGTTAGT+TGG | - | Chr4:89123359-89123378 | MsG0480023731.01.T01:intron | 25.0% |
| !! | TTTATGTTTGAGATGTACAT+AGG | - | Chr4:89124284-89124303 | MsG0480023731.01.T01:five_prime_UTR | 25.0% |
| !!! | AATATTTTTGGTATGCAAGA+AGG | - | Chr4:89123639-89123658 | MsG0480023731.01.T01:CDS | 25.0% |
| !!! | GATTCTGAATTTTGGTTTAT+GGG | - | Chr4:89124159-89124178 | MsG0480023731.01.T01:intron | 25.0% |
| !!! | TGATTCTGAATTTTGGTTTA+TGG | - | Chr4:89124158-89124177 | MsG0480023731.01.T01:intron | 25.0% |
| AAAATCAAACAATGTGCAGT+AGG | + | Chr4:89124247-89124266 | None:intergenic | 30.0% | |
| AAATCAAACAATGTGCAGTA+GGG | + | Chr4:89124246-89124265 | None:intergenic | 30.0% | |
| AAGAAGAAGATAGATAGAGA+TGG | + | Chr4:89122842-89122861 | None:intergenic | 30.0% | |
| AGTGTGAAGTTCTATGTAAA+TGG | - | Chr4:89124317-89124336 | MsG0480023731.01.T01:five_prime_UTR | 30.0% | |
| ATAGTAATAGAGCTTATGAG+TGG | - | Chr4:89123866-89123885 | MsG0480023731.01.T01:intron | 30.0% | |
| ATCTATCTTCTTCTTCTTGT+AGG | - | Chr4:89122847-89122866 | MsG0480023731.01.T01:three_prime_UTR | 30.0% | |
| ATGAATTCTTCTACTTCTAC+AGG | - | Chr4:89122979-89122998 | MsG0480023731.01.T01:CDS | 30.0% | |
| CTCATAAGCTCTATTACTAT+TGG | + | Chr4:89123866-89123885 | None:intergenic | 30.0% | |
| GTGTGAAGTTCTATGTAAAT+GGG | - | Chr4:89124318-89124337 | MsG0480023731.01.T01:five_prime_UTR | 30.0% | |
| TAGAAGAATTCATCAGTGAA+TGG | + | Chr4:89122972-89122991 | None:intergenic | 30.0% | |
| TATTAACTGTTTCGGTATCA+AGG | - | Chr4:89124015-89124034 | MsG0480023731.01.T01:CDS | 30.0% | |
| TCGGTATCAAGGATTTAATT+AGG | - | Chr4:89124026-89124045 | MsG0480023731.01.T01:CDS | 30.0% | |
| TGATATGTTAAAGTTGAGGT+CGG | + | Chr4:89123968-89123987 | None:intergenic | 30.0% | |
| TGTGAGGTAAATATTTAGAG+AGG | + | Chr4:89123230-89123249 | None:intergenic | 30.0% | |
| ! | ACTTCTTTTATCTTCCCAAT+AGG | + | Chr4:89124078-89124097 | None:intergenic | 30.0% |
| ! | CACTACAAAATGCAACTTTT+TGG | + | Chr4:89123743-89123762 | None:intergenic | 30.0% |
| AAACTATCAGAGACTCTGAA+GGG | - | Chr4:89123558-89123577 | MsG0480023731.01.T01:CDS | 35.0% | |
| AATCCTACATGCAAAACTTC+TGG | + | Chr4:89123189-89123208 | None:intergenic | 35.0% | |
| AGAAACTGCAACTGCTAAAA+TGG | - | Chr4:89123136-89123155 | MsG0480023731.01.T01:intron | 35.0% | |
| ATGAAAAGAACTCCAGCAAT+AGG | + | Chr4:89123714-89123733 | None:intergenic | 35.0% | |
| CAAGGATAATACAAGAAGGT+GGG | - | Chr4:89123598-89123617 | MsG0480023731.01.T01:CDS | 35.0% | |
| CTTCTTCTTGTAGGTTTCAT+TGG | - | Chr4:89122856-89122875 | MsG0480023731.01.T01:three_prime_UTR | 35.0% | |
| TAAACTATCAGAGACTCTGA+AGG | - | Chr4:89123557-89123576 | MsG0480023731.01.T01:CDS | 35.0% | |
| TGTTATATCTTGCAAACAGC+TGG | + | Chr4:89122886-89122905 | None:intergenic | 35.0% | |
| TTCAGAGTCTCTGATAGTTT+AGG | + | Chr4:89123558-89123577 | None:intergenic | 35.0% | |
| TTTAGCAGTTGCAGTTTCTT+TGG | + | Chr4:89123135-89123154 | None:intergenic | 35.0% | |
| ! | AAACCAGAAGTTTTGCATGT+AGG | - | Chr4:89123183-89123202 | MsG0480023731.01.T01:intron | 35.0% |
| ! | CTCACGATGATTCTGAATTT+TGG | - | Chr4:89124151-89124170 | MsG0480023731.01.T01:intron | 35.0% |
| ! | TACGCTATGAGAAAGCTTTT+AGG | - | Chr4:89124187-89124206 | MsG0480023731.01.T01:intron | 35.0% |
| ! | TATGTGTTAGTTGGTCTACT+TGG | - | Chr4:89123368-89123387 | MsG0480023731.01.T01:intron | 35.0% |
| ! | TGTTACTTATACACAACAGC+TGG | - | Chr4:89123687-89123706 | MsG0480023731.01.T01:intron | 35.0% |
| ! | TTAGGTGCATTTTACTATGC+AGG | - | Chr4:89124044-89124063 | MsG0480023731.01.T01:CDS | 35.0% |
| !! | ACAAAATGCAACTTTTTGGG+TGG | + | Chr4:89123739-89123758 | None:intergenic | 35.0% |
| !! | ATGCAGGTTTTGATACCTAT+TGG | - | Chr4:89124060-89124079 | MsG0480023731.01.T01:intron | 35.0% |
| !! | TGCAGGTTTTGATACCTATT+GGG | - | Chr4:89124061-89124080 | MsG0480023731.01.T01:intron | 35.0% |
| AACCTTCTCTTCTGCATCAA+CGG | - | Chr4:89123773-89123792 | MsG0480023731.01.T01:intron | 40.0% | |
| ATAATACAAGAAGGTGGGAG+AGG | - | Chr4:89123603-89123622 | MsG0480023731.01.T01:CDS | 40.0% | |
| GATGCAGAAGAGAAGGTTAT+TGG | + | Chr4:89123771-89123790 | None:intergenic | 40.0% | |
| GCAAGGATAATACAAGAAGG+TGG | - | Chr4:89123597-89123616 | MsG0480023731.01.T01:CDS | 40.0% | |
| GCATGTAGGATTCATGAACA+TGG | - | Chr4:89123197-89123216 | MsG0480023731.01.T01:intron | 40.0% | |
| GGGCTAAATGGACATTGAAA+TGG | + | Chr4:89124226-89124245 | None:intergenic | 40.0% | |
| GGTGCAAGGATAATACAAGA+AGG | - | Chr4:89123594-89123613 | MsG0480023731.01.T01:CDS | 40.0% | |
| TAATACAAGAAGGTGGGAGA+GGG | - | Chr4:89123604-89123623 | MsG0480023731.01.T01:CDS | 40.0% | |
| ! | CTGAAGGGTAAGTTGAGTTT+GGG | - | Chr4:89123573-89123592 | MsG0480023731.01.T01:CDS | 40.0% |
| ! | TCTGAAGGGTAAGTTGAGTT+TGG | - | Chr4:89123572-89123591 | MsG0480023731.01.T01:CDS | 40.0% |
| !! | AGAAGGAGAGAAAGTGTTGA+AGG | - | Chr4:89123656-89123675 | MsG0480023731.01.T01:intron | 40.0% |
| !! | CAGTAGCCAGTTAATTTGTG+AGG | + | Chr4:89123246-89123265 | None:intergenic | 40.0% |
| !!! | TGCAAAACTTCTGGTTTTCC+TGG | + | Chr4:89123180-89123199 | None:intergenic | 40.0% |
| ACCTTCTCTTCTGCATCAAC+GGG | - | Chr4:89123774-89123793 | MsG0480023731.01.T01:intron | 45.0% | |
| AGCACAAGAAAGCAACAACC+AGG | - | Chr4:89123159-89123178 | MsG0480023731.01.T01:intron | 45.0% | |
| CAATGTGCAGTAGGGCTAAA+TGG | + | Chr4:89124238-89124257 | None:intergenic | 45.0% | |
| TGAAGGGCAGAATGTGAATC+AGG | - | Chr4:89124101-89124120 | MsG0480023731.01.T01:intron | 45.0% | |
| ! | GTAAGTTGAGTTTGGGTGCA+AGG | - | Chr4:89123580-89123599 | MsG0480023731.01.T01:CDS | 45.0% |
| !!! | AATAATCAATATTTTTTTTA+GGG | - | Chr4:89123432-89123451 | MsG0480023731.01.T01:CDS | 5.0% |
| !!! | TAATAATCAATATTTTTTTT+AGG | - | Chr4:89123431-89123450 | MsG0480023731.01.T01:CDS | 5.0% |
| ACAACAGCTGGTCCTATTGC+TGG | - | Chr4:89123699-89123718 | MsG0480023731.01.T01:intron | 50.0% | |
| TCCCGTTGATGCAGAAGAGA+AGG | + | Chr4:89123778-89123797 | None:intergenic | 50.0% | |
| GACGCGCAAGATACCGTACA+AGG | - | Chr4:89123800-89123819 | MsG0480023731.01.T01:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 89122827 | 89124378 | 89122827 | ID=MsG0480023731.01;Name=MsG0480023731.01 |
| Chr4 | mRNA | 89122827 | 89124378 | 89122827 | ID=MsG0480023731.01.T01;Parent=MsG0480023731.01;Name=MsG0480023731.01.T01;_AED=0.45;_eAED=0.45;_QI=152|1|1|1|0.66|0.5|4|136|187 |
| Chr4 | exon | 89122827 | 89123139 | 89122827 | ID=MsG0480023731.01.T01:exon:12454;Parent=MsG0480023731.01.T01 |
| Chr4 | exon | 89123384 | 89123661 | 89123384 | ID=MsG0480023731.01.T01:exon:12453;Parent=MsG0480023731.01.T01 |
| Chr4 | exon | 89123987 | 89124073 | 89123987 | ID=MsG0480023731.01.T01:exon:12452;Parent=MsG0480023731.01.T01 |
| Chr4 | exon | 89124205 | 89124378 | 89124205 | ID=MsG0480023731.01.T01:exon:12451;Parent=MsG0480023731.01.T01 |
| Chr4 | five_prime_UTR | 89124227 | 89124378 | 89124227 | ID=MsG0480023731.01.T01:five_prime_utr;Parent=MsG0480023731.01.T01 |
| Chr4 | CDS | 89124205 | 89124226 | 89124205 | ID=MsG0480023731.01.T01:cds;Parent=MsG0480023731.01.T01 |
| Chr4 | CDS | 89123987 | 89124073 | 89123987 | ID=MsG0480023731.01.T01:cds;Parent=MsG0480023731.01.T01 |
| Chr4 | CDS | 89123384 | 89123661 | 89123384 | ID=MsG0480023731.01.T01:cds;Parent=MsG0480023731.01.T01 |
| Chr4 | CDS | 89122963 | 89123139 | 89122963 | ID=MsG0480023731.01.T01:cds;Parent=MsG0480023731.01.T01 |
| Chr4 | three_prime_UTR | 89122827 | 89122962 | 89122827 | ID=MsG0480023731.01.T01:three_prime_utr;Parent=MsG0480023731.01.T01 |
| Gene Sequence |
| Protein sequence |
