AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023900.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023900.01.T01 MTR_8g104510 92.034 477 34 4 1 476 1 474 0.0 886
MsG0480023900.01.T01 MTR_8g104490 87.002 477 56 6 1 475 1 473 0.0 832
MsG0480023900.01.T01 MTR_8g104490 87.136 412 47 6 66 475 1 408 0.0 717
MsG0480023900.01.T01 MTR_6g083730 62.786 481 162 11 1 475 1 470 0.0 587
MsG0480023900.01.T01 MTR_6g083320 51.760 483 146 18 1 475 1 404 1.23e-139 408
MsG0480023900.01.T01 MTR_2g011810 44.976 418 208 8 4 416 16 416 3.71e-119 363
MsG0480023900.01.T01 MTR_4g128600 48.533 375 181 5 13 384 22 387 9.15e-117 357
MsG0480023900.01.T01 MTR_4g090970 46.373 386 195 5 2 384 13 389 1.13e-115 353
MsG0480023900.01.T01 MTR_2g450080 41.475 434 232 8 4 421 11 438 1.39e-108 334
MsG0480023900.01.T01 MTR_4g106810 49.235 327 152 7 1 326 1 314 2.55e-92 291
MsG0480023900.01.T01 MTR_7g112000 35.933 359 213 8 50 403 44 390 1.16e-55 194
MsG0480023900.01.T01 MTR_7g111980 36.364 341 188 10 50 379 59 381 1.15e-48 176
MsG0480023900.01.T01 MTR_7g111960 35.465 344 197 10 50 381 60 390 1.03e-46 170
MsG0480023900.01.T01 MTR_7g111980 38.176 296 168 8 92 379 10 298 3.83e-46 167
MsG0480023900.01.T01 MTR_6g083810 59.259 135 50 5 1 131 1 134 5.86e-42 146
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023900.01.T01 AT1G73805 50.939 426 189 11 1 420 1 412 4.07e-140 410
MsG0480023900.01.T01 AT5G57580 49.096 387 181 7 3 384 12 387 2.76e-117 358
MsG0480023900.01.T01 AT4G25800 47.668 386 186 7 4 384 2 376 4.23e-114 348
MsG0480023900.01.T01 AT4G25800 47.668 386 186 7 4 384 2 376 4.23e-114 348
MsG0480023900.01.T01 AT2G18750 46.174 379 192 6 8 384 21 389 1.31e-111 343
MsG0480023900.01.T01 AT2G18750 46.174 379 192 6 8 384 21 389 1.31e-111 343
MsG0480023900.01.T01 AT2G18750 46.174 379 192 6 8 384 21 389 1.31e-111 343
MsG0480023900.01.T01 AT2G24300 44.072 388 208 5 4 387 3 385 1.01e-103 322
MsG0480023900.01.T01 AT2G24300 44.072 388 208 5 4 387 7 389 1.27e-103 322
MsG0480023900.01.T01 AT4G31000 43.377 385 204 7 17 397 21 395 1.48e-99 310
MsG0480023900.01.T01 AT5G62570 42.239 393 204 9 1 385 1 378 5.88e-94 294
MsG0480023900.01.T01 AT5G62570 44.044 361 180 8 1 353 1 347 2.56e-93 288
MsG0480023900.01.T01 AT5G62570 43.396 371 195 7 21 385 2 363 2.93e-93 291
MsG0480023900.01.T01 AT2G24300 43.544 333 183 3 58 387 8 338 2.41e-88 281
MsG0480023900.01.T01 AT5G62570 44.409 313 156 7 1 309 1 299 2.59e-74 236
MsG0480023900.01.T01 AT4G31000 39.244 344 182 7 58 397 54 374 8.26e-74 242
MsG0480023900.01.T01 AT5G26920 37.057 367 199 10 29 385 24 368 7.34e-71 231
MsG0480023900.01.T01 AT5G26920 37.330 367 198 11 29 385 24 368 6.82e-70 233
MsG0480023900.01.T01 AT5G26920 37.057 367 191 12 29 385 24 360 3.26e-67 225

Find 119 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGATCAAAACAACTATTT+TGG 0.186437 4:+91051588 MsG0480023900.01.T01:CDS
TCCTAAATTCTTTACCAAAA+TGG 0.210918 4:+91048837 MsG0480023900.01.T01:exon
AACATGAATTGCAAACTTAA+TGG 0.225284 4:-91049464 None:intergenic
CTAGACTTGTAGGGACTATT+TGG 0.240414 4:-91049583 None:intergenic
CCACCGTCTGATTGTGAATC+TGG 0.259554 4:-91051735 None:intergenic
GGGAAAAGGCCATTGCTTAC+AGG 0.316410 4:+91049719 MsG0480023900.01.T01:CDS
ACTACAATTTCTATCTTGAT+TGG 0.325646 4:-91049611 None:intergenic
GTTCTTATCCGTTTGTCATT+TGG 0.329603 4:-91048904 None:intergenic
GGACTATTTGGTCATTGCTT+TGG 0.356048 4:-91049571 None:intergenic
ATTGGGTGTGCTAGACTTGT+AGG 0.364352 4:-91049593 None:intergenic
TGTCTGTAGTTGACCCTCTT+AGG 0.365818 4:+91050618 MsG0480023900.01.T01:CDS
ATAGAAATTGTAGTCCTTGA+TGG 0.367797 4:+91049620 MsG0480023900.01.T01:CDS
GCTTGCTTTGATGTTATTGT+TGG 0.368262 4:-91048811 None:intergenic
AGGGATGGAATTGCACCAAT+TGG 0.372898 4:+91049761 MsG0480023900.01.T01:CDS
CATGCAAAGACTTGTGTAAT+GGG 0.381122 4:+91051045 MsG0480023900.01.T01:CDS
AACAACAATAATGCACAAAT+AGG 0.385349 4:+91051648 MsG0480023900.01.T01:CDS
ACGTATCCAGCTAGAATTAT+CGG 0.390207 4:-91049798 None:intergenic
CGGTCATGCCTTCACGAATT+CGG 0.392944 4:-91049874 None:intergenic
TGATGTTAGCTCTAACCATT+TGG 0.400701 4:-91051125 None:intergenic
TCAACAAGAATCACACTGAT+TGG 0.402570 4:-91049548 None:intergenic
TTCTCATGTGGCAGGGTGAT+AGG 0.406355 4:+91049105 MsG0480023900.01.T01:intron
CACAAATAGGTTGCATCGAC+TGG 0.407081 4:+91051661 MsG0480023900.01.T01:CDS
CTACAATTTCTATCTTGATT+GGG 0.407874 4:-91049610 None:intergenic
TTTGGCATATTGCATTCAAA+TGG 0.408571 4:-91051107 None:intergenic
GTTGTTTGCTACATAGTTGC+CGG 0.425532 4:-91051628 None:intergenic
GTGATATAACACCTCATTGA+TGG 0.429717 4:+91051757 MsG0480023900.01.T01:CDS
GGGATGGAATTGCACCAATT+GGG 0.430451 4:+91049762 MsG0480023900.01.T01:CDS
TGTATTGTGAAAGAGAGAAC+TGG 0.432059 4:+91049698 MsG0480023900.01.T01:CDS
TGGGCTCTCACTTTAATCTC+TGG 0.437542 4:+91051921 MsG0480023900.01.T01:three_prime_UTR
GGTGCTTGATGATTATTGTT+TGG 0.438338 4:-91051555 None:intergenic
CAAGTCTAAAGGATGAAGTT+TGG 0.439885 4:+91050510 MsG0480023900.01.T01:CDS
ACTTCATCCTTTAGACTTGG+TGG 0.444061 4:-91050506 None:intergenic
GTTTGGCGTTTAGAGAAGAT+TGG 0.451746 4:+91050527 MsG0480023900.01.T01:CDS
TGAGAGAAGCATATGCTAGA+TGG 0.455078 4:+91051302 MsG0480023900.01.T01:CDS
AGAGTCTTAGTGTCAAGTCT+TGG 0.466766 4:+91051867 MsG0480023900.01.T01:three_prime_UTR
GCATGCAAAGACTTGTGTAA+TGG 0.469359 4:+91051044 MsG0480023900.01.T01:CDS
GGTGATAGGAGAAGTGGTTA+TGG 0.471004 4:+91049119 MsG0480023900.01.T01:CDS
TTTGAATGCAATATGCCAAA+TGG 0.472527 4:+91051110 MsG0480023900.01.T01:CDS
GTTATTGTTGGTTTAAGAAA+AGG 0.478558 4:-91048799 None:intergenic
GAGAATTGAATCTTACTATG+AGG 0.479870 4:+91049741 MsG0480023900.01.T01:CDS
ATCCTTAACAACAAAAGCTT+CGG 0.480776 4:-91049894 None:intergenic
CAACAAGAATCACACTGATT+GGG 0.484318 4:-91049547 None:intergenic
ACCTCATTGATGGAGCTTCA+AGG 0.484972 4:+91051767 MsG0480023900.01.T01:exon
GCCACATCACCATTCATGAA+TGG 0.487146 4:+91051696 MsG0480023900.01.T01:CDS
AAGGTTCCAAGCCAGAGAAA+AGG 0.490929 4:-91049158 None:intergenic
CAAACTTCATCCTTTAGACT+TGG 0.497266 4:-91050509 None:intergenic
CGAGACATTAACAACACATT+GGG 0.498962 4:+91051168 MsG0480023900.01.T01:CDS
TGTCTCGGATGGGAATGGTT+TGG 0.499358 4:-91051152 None:intergenic
GCATATTGCATTCAAATGGA+TGG 0.501335 4:-91051103 None:intergenic
GGTGATAATTGTCTAGAGAC+CGG 0.501799 4:+91051609 MsG0480023900.01.T01:CDS
ACATCATCCACCAAGTCTAA+AGG 0.508840 4:+91050499 MsG0480023900.01.T01:CDS
CTTACCACTCTTCTAAGTAA+AGG 0.510684 4:-91049177 None:intergenic
GTGAACTCAATATCCCCAAT+TGG 0.516335 4:-91049776 None:intergenic
ATTGCTTGAAGTCTCAATGA+AGG 0.519319 4:-91049434 None:intergenic
TGAAAGAGAGAACTGGGAAA+AGG 0.520203 4:+91049705 MsG0480023900.01.T01:CDS
AGGTTGCAGTGAGTAGCTAT+AGG 0.521995 4:-91048779 None:intergenic
CACCGTCTGATTGTGAATCT+GGG 0.522998 4:-91051734 None:intergenic
CGGACACTTTGATTAGTCCC+AGG 0.523841 4:-91049854 None:intergenic
GTTACCTTTCTGAGCCTAAG+AGG 0.526278 4:-91050632 None:intergenic
AACGTTGCTTTGTTAACTCA+AGG 0.528420 4:+91051361 MsG0480023900.01.T01:CDS
ATGGTTAGAGCTAACATCAA+TGG 0.535787 4:+91051129 MsG0480023900.01.T01:CDS
GTTGCTGTTAGAATTGCTCC+TGG 0.539447 4:+91049836 MsG0480023900.01.T01:CDS
TTGGGTGTGCTAGACTTGTA+GGG 0.539741 4:-91049592 None:intergenic
TTGGTATGTCCGAGAAAATG+TGG 0.540719 4:+91051007 MsG0480023900.01.T01:CDS
CTTTCACTTCCAATATTCAC+AGG 0.543526 4:+91049497 MsG0480023900.01.T01:CDS
AGTTCACCGATAATTCTAGC+TGG 0.544574 4:+91049792 MsG0480023900.01.T01:CDS
CCAATGTGTTGTTAATGTCT+CGG 0.546259 4:-91051167 None:intergenic
AAGACAAACCAAATGACAAA+CGG 0.546324 4:+91048896 MsG0480023900.01.T01:CDS
TGCTAGATGGAATGAGTTGG+AGG 0.547803 4:+91051315 MsG0480023900.01.T01:CDS
TAAGGTAGGCCATTCATGAA+TGG 0.552824 4:-91051705 None:intergenic
GTTAATGTCTCGGATGGGAA+TGG 0.555065 4:-91051157 None:intergenic
TTCAAATGGATGGTAAATTG+AGG 0.559963 4:-91051093 None:intergenic
TTGATATGATCAGGTGAATG+AGG 0.563418 4:+91049358 MsG0480023900.01.T01:intron
AAAACATACGAAGCAAAAGA+AGG 0.565396 4:-91048937 None:intergenic
AGAATTGAATCTTACTATGA+GGG 0.565949 4:+91049742 MsG0480023900.01.T01:CDS
TTACCAAAATGGCTGCAAAA+CGG 0.566987 4:+91048848 MsG0480023900.01.T01:exon
TGTGAATCTGGGAAGCTGTA+AGG 0.567774 4:-91051723 None:intergenic
TAGAAGGAAAATCTCCATCA+AGG 0.570001 4:-91049634 None:intergenic
GCTATAGGTGGAGGAATGAA+AGG 0.571331 4:-91048764 None:intergenic
TTGAATCTTACTATGAGGGA+TGG 0.576141 4:+91049746 MsG0480023900.01.T01:CDS
GGATGGAATTGCACCAATTG+GGG 0.580908 4:+91049763 MsG0480023900.01.T01:CDS
TTCAATTCTCCTGTAAGCAA+TGG 0.582190 4:-91049728 None:intergenic
AACTGTTGTAATCCCTTCTG+AGG 0.582778 4:-91050579 None:intergenic
TTACCTTTCTGAGCCTAAGA+GGG 0.582827 4:-91050631 None:intergenic
ATTGTTTGGAAATTGCTCCA+TGG 0.588651 4:-91051541 None:intergenic
TTCATTGAGACTTCAAGCAA+TGG 0.589164 4:+91049436 MsG0480023900.01.T01:CDS
CCGAGACATTAACAACACAT+TGG 0.589170 4:+91051167 MsG0480023900.01.T01:CDS
CTAGTGAAAATGAATCATCA+TGG 0.589991 4:+91049654 MsG0480023900.01.T01:CDS
GGAACCTTTACTTAGAAGAG+TGG 0.595523 4:+91049173 MsG0480023900.01.T01:CDS
CAGTGAGTAGCTATAGGTGG+AGG 0.596371 4:-91048773 None:intergenic
GGTGACTTTGTTATTGATCG+TGG 0.600634 4:-91049413 None:intergenic
TGACCCTCTTAGGCTCAGAA+AGG 0.602742 4:+91050628 MsG0480023900.01.T01:CDS
TGGCAGGGTGATAGGAGAAG+TGG 0.605295 4:+91049113 MsG0480023900.01.T01:intron
TGTGTTGTTAATGTCTCGGA+TGG 0.608686 4:-91051163 None:intergenic
AATCTGGGAAGCTGTAAGGT+AGG 0.616693 4:-91051719 None:intergenic
ATATGCTAGATGGAATGAGT+TGG 0.618437 4:+91051312 MsG0480023900.01.T01:CDS
GACTTTGTTATTGATCGTGG+TGG 0.621283 4:-91049410 None:intergenic
ACAATAACATCAAAGCAAGC+TGG 0.621523 4:+91048814 MsG0480023900.01.T01:five_prime_UTR
TTGCAGTGAGTAGCTATAGG+TGG 0.624654 4:-91048776 None:intergenic
TTAGAGAAGATTGGTAAAGA+CGG 0.625104 4:+91050536 MsG0480023900.01.T01:CDS
GTATTGTGAAAGAGAGAACT+GGG 0.625839 4:+91049699 MsG0480023900.01.T01:CDS
TTGCTGTTAGAATTGCTCCT+GGG 0.625923 4:+91049837 MsG0480023900.01.T01:CDS
CAAAGTGTCCGAATTCGTGA+AGG 0.626320 4:+91049866 MsG0480023900.01.T01:CDS
TCACTATACAGGTGAAACCA+TGG 0.626418 4:+91051524 MsG0480023900.01.T01:intron
AGCAAAATACTAGACACGGA+TGG 0.635352 4:+91049521 MsG0480023900.01.T01:CDS
TGAATCATCATGGACTAGTG+AGG 0.636414 4:+91049664 MsG0480023900.01.T01:CDS
TTCCCAGATTCACAATCAGA+CGG 0.636484 4:+91051732 MsG0480023900.01.T01:CDS
GCCATTCATGAATGGTGATG+TGG 0.641806 4:-91051697 None:intergenic
CATTAACAACACATTGGGCA+AGG 0.650846 4:+91051173 MsG0480023900.01.T01:CDS
ACCTTGAAGCTCCATCAATG+AGG 0.663424 4:-91051768 None:intergenic
AGGTAGCAAAATACTAGACA+CGG 0.663844 4:+91049517 MsG0480023900.01.T01:CDS
AAGAAAACTCACATTCGCCA+CGG 0.670555 4:-91049919 None:intergenic
TGGTATGTCCGAGAAAATGT+GGG 0.700296 4:+91051008 MsG0480023900.01.T01:CDS
ATATGATCAGGTGAATGAGG+AGG 0.701419 4:+91049361 MsG0480023900.01.T01:intron
AACAAACTCTATGTCTACCG+CGG 0.707473 4:+91051069 MsG0480023900.01.T01:CDS
GTGTTGTTAATGTCTCGGAT+GGG 0.715548 4:-91051162 None:intergenic
CCAGATTCACAATCAGACGG+TGG 0.723625 4:+91051735 MsG0480023900.01.T01:CDS
GGATGGTAAATTGAGGACCG+CGG 0.726063 4:-91051086 None:intergenic
TTTGTTGTTAAGGATCACCG+TGG 0.748264 4:+91049902 MsG0480023900.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAATGAATATATAGTT+AGG - Chr4:91050686-91050705 None:intergenic 10.0%
!! TATAAATGATGTATATTTAT+AGG + Chr4:91050914-91050933 MsG0480023900.01.T01:intron 10.0%
!! TATACATCATTTATAATTAT+TGG - Chr4:91050909-91050928 None:intergenic 10.0%
!! TTAATTTCATTTCAAAATTA+TGG - Chr4:91049226-91049245 None:intergenic 10.0%
!! AAATAACATTCTCAATTATA+TGG + Chr4:91050962-91050981 MsG0480023900.01.T01:intron 15.0%
!! CATTATTAATGTTCAATAAA+TGG + Chr4:91050733-91050752 MsG0480023900.01.T01:intron 15.0%
!! TATAAATTAGAATATCTTGA+AGG - Chr4:91050063-91050082 None:intergenic 15.0%
!!! TACTTTTGGTTAAATAATTT+TGG - Chr4:91051429-91051448 None:intergenic 15.0%
!!! TATATAAAAATTTTAGCAGT+TGG + Chr4:91051825-91051844 MsG0480023900.01.T01:three_prime_UTR 15.0%
!!! TCTAAATTTCATTTTTCAAT+TGG - Chr4:91051457-91051476 None:intergenic 15.0%
!!! TTCTCTATGATTTTTTTTTT+TGG + Chr4:91050141-91050160 MsG0480023900.01.T01:intron 15.0%
!! AAAAATCAATGCATAGAAAA+AGG - Chr4:91051236-91051255 None:intergenic 20.0%
!! AAAATTATGGTAAAGTTGAA+TGG - Chr4:91049213-91049232 None:intergenic 20.0%
!! ACTAAAATAAAGGATCATAT+AGG + Chr4:91050368-91050387 MsG0480023900.01.T01:intron 20.0%
!! ACTGTTAATTAATGATTAGT+TGG + Chr4:91050296-91050315 MsG0480023900.01.T01:intron 20.0%
!! ATGATAGAATGAATGAATAT+TGG - Chr4:91048987-91049006 None:intergenic 20.0%
!! CTAAAATAAAGGATCATATA+GGG + Chr4:91050369-91050388 MsG0480023900.01.T01:intron 20.0%
!! CTATTACTATAAGACTAAAA+AGG - Chr4:91050399-91050418 None:intergenic 20.0%
!! GCAAATTAAATGAACTATAT+AGG - Chr4:91051261-91051280 None:intergenic 20.0%
!! TGATAGAATGAATGAATATT+GGG - Chr4:91048986-91049005 None:intergenic 20.0%
!! TTGGGTTATAACTAAAATAA+AGG + Chr4:91050358-91050377 MsG0480023900.01.T01:intron 20.0%
!!! CAAAAGACATTACATTTTTT+GGG - Chr4:91051893-91051912 None:intergenic 20.0%
!!! GCACAATGTATTTTTATATA+CGG + Chr4:91050832-91050851 MsG0480023900.01.T01:intron 20.0%
!!! TAATTTATTTTACGGTTGTT+GGG + Chr4:91050340-91050359 MsG0480023900.01.T01:intron 20.0%
!!! TATGATCAAAACAACTATTT+TGG + Chr4:91051588-91051607 MsG0480023900.01.T01:CDS 20.0%
!!! TCATTTTTTTATACATAGCT+TGG + Chr4:91049031-91049050 MsG0480023900.01.T01:intron 20.0%
!!! TTAATTTATTTTACGGTTGT+TGG + Chr4:91050339-91050358 MsG0480023900.01.T01:intron 20.0%
!!! TTCAATTGGAAATTTACTTT+TGG - Chr4:91051443-91051462 None:intergenic 20.0%
!!! TTTTGATCATATGTTATAAC+TGG - Chr4:91051579-91051598 None:intergenic 20.0%
! AACAACAATAATGCACAAAT+AGG + Chr4:91051648-91051667 MsG0480023900.01.T01:CDS 25.0%
! AACATGAATTGCAAACTTAA+TGG - Chr4:91049467-91049486 None:intergenic 25.0%
! AATGAATATATAGTTAGGAG+AGG - Chr4:91050681-91050700 None:intergenic 25.0%
! AATGAGAATCCAATATGTTA+GGG + Chr4:91049972-91049991 MsG0480023900.01.T01:intron 25.0%
! ACTACAATTTCTATCTTGAT+TGG - Chr4:91049614-91049633 None:intergenic 25.0%
! AGAATTGAATCTTACTATGA+GGG + Chr4:91049742-91049761 MsG0480023900.01.T01:CDS 25.0%
! AGGGTTTATATAGATTAAGA+TGG - Chr4:91050661-91050680 None:intergenic 25.0%
! ATGAATATATAGTTAGGAGA+GGG - Chr4:91050680-91050699 None:intergenic 25.0%
! CTACAATTTCTATCTTGATT+GGG - Chr4:91049613-91049632 None:intergenic 25.0%
! TAAAACTAACCCTAACATAT+TGG - Chr4:91049984-91050003 None:intergenic 25.0%
! TAATGAGAATCCAATATGTT+AGG + Chr4:91049971-91049990 MsG0480023900.01.T01:intron 25.0%
! TCCTAAATTCTTTACCAAAA+TGG + Chr4:91048837-91048856 MsG0480023900.01.T01:exon 25.0%
! TGAGAATTGAGAGTAATTAA+TGG - Chr4:91049091-91049110 None:intergenic 25.0%
! TGTTGAGATAAATTTAGTCA+CGG - Chr4:91049260-91049279 None:intergenic 25.0%
! TTTATTGAATCTCACTATAC+AGG + Chr4:91051513-91051532 MsG0480023900.01.T01:intron 25.0%
!! CCAAAAAATGTAATGTCTTT+TGG + Chr4:91051891-91051910 MsG0480023900.01.T01:three_prime_UTR 25.0%
!!! CCAAAAGACATTACATTTTT+TGG - Chr4:91051894-91051913 None:intergenic 25.0%
!!! GTTATTGTTGGTTTAAGAAA+AGG - Chr4:91048802-91048821 None:intergenic 25.0%
!!! TGAATATTGGGTTTGTTAAT+TGG - Chr4:91048974-91048993 None:intergenic 25.0%
AAAACATACGAAGCAAAAGA+AGG - Chr4:91048940-91048959 None:intergenic 30.0%
AACATGTCTTTGATATGATC+AGG + Chr4:91049349-91049368 MsG0480023900.01.T01:intron 30.0%
AAGACAAACCAAATGACAAA+CGG + Chr4:91048896-91048915 MsG0480023900.01.T01:CDS 30.0%
AATTACTCTCAATTCTCATG+TGG + Chr4:91049093-91049112 MsG0480023900.01.T01:intron 30.0%
AGATAAATTTAGTCACGGTA+CGG - Chr4:91049255-91049274 None:intergenic 30.0%
ATAGAAATTGTAGTCCTTGA+TGG + Chr4:91049620-91049639 MsG0480023900.01.T01:CDS 30.0%
ATCCTTAACAACAAAAGCTT+CGG - Chr4:91049897-91049916 None:intergenic 30.0%
CTAGTGAAAATGAATCATCA+TGG + Chr4:91049654-91049673 MsG0480023900.01.T01:CDS 30.0%
GAGAATTGAATCTTACTATG+AGG + Chr4:91049741-91049760 MsG0480023900.01.T01:CDS 30.0%
TAGAAAAAGGTAGAAGTAGA+AGG - Chr4:91051223-91051242 None:intergenic 30.0%
TGTGATGCATTTAAATGAAG+AGG - Chr4:91050193-91050212 None:intergenic 30.0%
TTAGAGAAGATTGGTAAAGA+CGG + Chr4:91050536-91050555 MsG0480023900.01.T01:CDS 30.0%
TTCAAATGGATGGTAAATTG+AGG - Chr4:91051096-91051115 None:intergenic 30.0%
TTTGAATGCAATATGCCAAA+TGG + Chr4:91051110-91051129 MsG0480023900.01.T01:CDS 30.0%
TTTGGCATATTGCATTCAAA+TGG - Chr4:91051110-91051129 None:intergenic 30.0%
! ATTTTGCTACCTGTGAATAT+TGG - Chr4:91049509-91049528 None:intergenic 30.0%
! GAGTAATTAATGGATAGTAG+AGG - Chr4:91049081-91049100 None:intergenic 30.0%
! GATGATTCATTTTCACTAGA+AGG - Chr4:91049653-91049672 None:intergenic 30.0%
!! GCCATTTTGGTAAAGAATTT+AGG - Chr4:91048841-91048860 None:intergenic 30.0%
!! TGGGTTTGTTAATTGGTTTA+AGG - Chr4:91048967-91048986 None:intergenic 30.0%
!!! AATGTCTTTTGGCTTATGTT+GGG + Chr4:91051902-91051921 MsG0480023900.01.T01:three_prime_UTR 30.0%
!!! TAATGTCTTTTGGCTTATGT+TGG + Chr4:91051901-91051920 MsG0480023900.01.T01:three_prime_UTR 30.0%
ACAAAAAGTTGACCTCAGAA+GGG + Chr4:91050567-91050586 MsG0480023900.01.T01:CDS 35.0%
ACAATAACATCAAAGCAAGC+TGG + Chr4:91048814-91048833 MsG0480023900.01.T01:five_prime_UTR 35.0%
ACGTATCCAGCTAGAATTAT+CGG - Chr4:91049801-91049820 None:intergenic 35.0%
AGCTAATTAAACTAGCTACC+TGG + Chr4:91050217-91050236 MsG0480023900.01.T01:intron 35.0%
AGGTAGCAAAATACTAGACA+CGG + Chr4:91049517-91049536 MsG0480023900.01.T01:CDS 35.0%
ATATGCTAGATGGAATGAGT+TGG + Chr4:91051312-91051331 MsG0480023900.01.T01:CDS 35.0%
ATGGTTAGAGCTAACATCAA+TGG + Chr4:91051129-91051148 MsG0480023900.01.T01:CDS 35.0%
ATTGCTTGAAGTCTCAATGA+AGG - Chr4:91049437-91049456 None:intergenic 35.0%
ATTGTTTGGAAATTGCTCCA+TGG - Chr4:91051544-91051563 None:intergenic 35.0%
CAAACTTCATCCTTTAGACT+TGG - Chr4:91050512-91050531 None:intergenic 35.0%
CAAGTCTAAAGGATGAAGTT+TGG + Chr4:91050510-91050529 MsG0480023900.01.T01:CDS 35.0%
CATGCAAAGACTTGTGTAAT+GGG + Chr4:91051045-91051064 MsG0480023900.01.T01:CDS 35.0%
CGAGACATTAACAACACATT+GGG + Chr4:91051168-91051187 MsG0480023900.01.T01:CDS 35.0%
CTTACCACTCTTCTAAGTAA+AGG - Chr4:91049180-91049199 None:intergenic 35.0%
CTTTCACTTCCAATATTCAC+AGG + Chr4:91049497-91049516 MsG0480023900.01.T01:CDS 35.0%
GCATATTGCATTCAAATGGA+TGG - Chr4:91051106-91051125 None:intergenic 35.0%
GCTTGCTTTGATGTTATTGT+TGG - Chr4:91048814-91048833 None:intergenic 35.0%
GTATTGTGAAAGAGAGAACT+GGG + Chr4:91049699-91049718 MsG0480023900.01.T01:CDS 35.0%
GTGATATAACACCTCATTGA+TGG + Chr4:91051757-91051776 MsG0480023900.01.T01:CDS 35.0%
GTTCTTATCCGTTTGTCATT+TGG - Chr4:91048907-91048926 None:intergenic 35.0%
TAGAAGGAAAATCTCCATCA+AGG - Chr4:91049637-91049656 None:intergenic 35.0%
TAGTGTCATACTCATCAAGT+AGG - Chr4:91050429-91050448 None:intergenic 35.0%
TCAACAAGAATCACACTGAT+TGG - Chr4:91049551-91049570 None:intergenic 35.0%
TGTATTGTGAAAGAGAGAAC+TGG + Chr4:91049698-91049717 MsG0480023900.01.T01:CDS 35.0%
TTACCAAAATGGCTGCAAAA+CGG + Chr4:91048848-91048867 MsG0480023900.01.T01:exon 35.0%
TTCAATTCTCCTGTAAGCAA+TGG - Chr4:91049731-91049750 None:intergenic 35.0%
TTCATTGAGACTTCAAGCAA+TGG + Chr4:91049436-91049455 MsG0480023900.01.T01:CDS 35.0%
TTGAATCTTACTATGAGGGA+TGG + Chr4:91049746-91049765 MsG0480023900.01.T01:CDS 35.0%
TTGATATGATCAGGTGAATG+AGG + Chr4:91049358-91049377 MsG0480023900.01.T01:intron 35.0%
! AACATGCAAAACCTTTTCTC+TGG + Chr4:91049147-91049166 MsG0480023900.01.T01:CDS 35.0%
! AACGTTGCTTTGTTAACTCA+AGG + Chr4:91051361-91051380 MsG0480023900.01.T01:CDS 35.0%
! CAACAAGAATCACACTGATT+GGG - Chr4:91049550-91049569 None:intergenic 35.0%
! CCAATGTGTTGTTAATGTCT+CGG - Chr4:91051170-91051189 None:intergenic 35.0%
! GGTGCTTGATGATTATTGTT+TGG - Chr4:91051558-91051577 None:intergenic 35.0%
!! TGATGTTAGCTCTAACCATT+TGG - Chr4:91051128-91051147 None:intergenic 35.0%
!! TGGTTTTGCTAGCAGATTTT+AGG + Chr4:91050982-91051001 MsG0480023900.01.T01:intron 35.0%
AACAAACTCTATGTCTACCG+CGG + Chr4:91051069-91051088 MsG0480023900.01.T01:CDS 40.0%
AACTGTTGTAATCCCTTCTG+AGG - Chr4:91050582-91050601 None:intergenic 40.0%
AAGAAAACTCACATTCGCCA+CGG - Chr4:91049922-91049941 None:intergenic 40.0%
ACATCATCCACCAAGTCTAA+AGG + Chr4:91050499-91050518 MsG0480023900.01.T01:CDS 40.0%
ACCACCAAAGCATATATACC+AGG - Chr4:91050238-91050257 None:intergenic 40.0%
ACCTGGTATATATGCTTTGG+TGG + Chr4:91050234-91050253 MsG0480023900.01.T01:intron 40.0%
ACTTCATCCTTTAGACTTGG+TGG - Chr4:91050509-91050528 None:intergenic 40.0%
AGAGTCTTAGTGTCAAGTCT+TGG + Chr4:91051867-91051886 MsG0480023900.01.T01:three_prime_UTR 40.0%
AGCAAAATACTAGACACGGA+TGG + Chr4:91049521-91049540 MsG0480023900.01.T01:CDS 40.0%
AGTTCACCGATAATTCTAGC+TGG + Chr4:91049792-91049811 MsG0480023900.01.T01:CDS 40.0%
ATATGATCAGGTGAATGAGG+AGG + Chr4:91049361-91049380 MsG0480023900.01.T01:intron 40.0%
CACAAAAAGTTGACCTCAGA+AGG + Chr4:91050566-91050585 MsG0480023900.01.T01:CDS 40.0%
CATTAACAACACATTGGGCA+AGG + Chr4:91051173-91051192 MsG0480023900.01.T01:CDS 40.0%
CCGAGACATTAACAACACAT+TGG + Chr4:91051167-91051186 MsG0480023900.01.T01:CDS 40.0%
CTAGACTTGTAGGGACTATT+TGG - Chr4:91049586-91049605 None:intergenic 40.0%
GCATGCAAAGACTTGTGTAA+TGG + Chr4:91051044-91051063 MsG0480023900.01.T01:CDS 40.0%
GCTACCTGGTATATATGCTT+TGG + Chr4:91050231-91050250 MsG0480023900.01.T01:intron 40.0%
GGAACCTTTACTTAGAAGAG+TGG + Chr4:91049173-91049192 MsG0480023900.01.T01:CDS 40.0%
GGACTATTTGGTCATTGCTT+TGG - Chr4:91049574-91049593 None:intergenic 40.0%
GGTGATAATTGTCTAGAGAC+CGG + Chr4:91051609-91051628 MsG0480023900.01.T01:CDS 40.0%
GTGAACTCAATATCCCCAAT+TGG - Chr4:91049779-91049798 None:intergenic 40.0%
GTTTGGCGTTTAGAGAAGAT+TGG + Chr4:91050527-91050546 MsG0480023900.01.T01:CDS 40.0%
TAAGGTAGGCCATTCATGAA+TGG - Chr4:91051708-91051727 None:intergenic 40.0%
TCACTATACAGGTGAAACCA+TGG + Chr4:91051524-91051543 MsG0480023900.01.T01:intron 40.0%
TGAAAGAGAGAACTGGGAAA+AGG + Chr4:91049705-91049724 MsG0480023900.01.T01:CDS 40.0%
TGGTATGTCCGAGAAAATGT+GGG + Chr4:91051008-91051027 MsG0480023900.01.T01:CDS 40.0%
TTACCTTTCTGAGCCTAAGA+GGG - Chr4:91050634-91050653 None:intergenic 40.0%
TTCCCAGATTCACAATCAGA+CGG + Chr4:91051732-91051751 MsG0480023900.01.T01:CDS 40.0%
TTGGTATGTCCGAGAAAATG+TGG + Chr4:91051007-91051026 MsG0480023900.01.T01:CDS 40.0%
! AAACCGTTTTGCAGCCATTT+TGG - Chr4:91048854-91048873 None:intergenic 40.0%
! GTGTTGTTAATGTCTCGGAT+GGG - Chr4:91051165-91051184 None:intergenic 40.0%
! GTTGTTTGCTACATAGTTGC+CGG - Chr4:91051631-91051650 None:intergenic 40.0%
! TGAGAGAAGCATATGCTAGA+TGG + Chr4:91051302-91051321 MsG0480023900.01.T01:CDS 40.0%
! TGTCACATCCCACATTTTCT+CGG - Chr4:91051019-91051038 None:intergenic 40.0%
! TGTGTTGTTAATGTCTCGGA+TGG - Chr4:91051166-91051185 None:intergenic 40.0%
! TTGCTGTTAGAATTGCTCCT+GGG + Chr4:91049837-91049856 MsG0480023900.01.T01:CDS 40.0%
!! GACTTTGTTATTGATCGTGG+TGG - Chr4:91049413-91049432 None:intergenic 40.0%
!! GGTGACTTTGTTATTGATCG+TGG - Chr4:91049416-91049435 None:intergenic 40.0%
!! TGAATCATCATGGACTAGTG+AGG + Chr4:91049664-91049683 MsG0480023900.01.T01:CDS 40.0%
!! TTTGTTGTTAAGGATCACCG+TGG + Chr4:91049902-91049921 MsG0480023900.01.T01:CDS 40.0%
!!! GACCGAAGCTTTTGTTGTTA+AGG + Chr4:91049892-91049911 MsG0480023900.01.T01:CDS 40.0%
AAGGTTCCAAGCCAGAGAAA+AGG - Chr4:91049161-91049180 None:intergenic 45.0%
AATCTGGGAAGCTGTAAGGT+AGG - Chr4:91051722-91051741 None:intergenic 45.0%
ACCTCATTGATGGAGCTTCA+AGG + Chr4:91051767-91051786 MsG0480023900.01.T01:exon 45.0%
ACCTTGAAGCTCCATCAATG+AGG - Chr4:91051771-91051790 None:intergenic 45.0%
ACTCTCAATTCTCATGTGGC+AGG + Chr4:91049097-91049116 MsG0480023900.01.T01:intron 45.0%
AGGGATGGAATTGCACCAAT+TGG + Chr4:91049761-91049780 MsG0480023900.01.T01:CDS 45.0%
AGGTTGCAGTGAGTAGCTAT+AGG - Chr4:91048782-91048801 None:intergenic 45.0%
ATTGGGTGTGCTAGACTTGT+AGG - Chr4:91049596-91049615 None:intergenic 45.0%
CACCGTCTGATTGTGAATCT+GGG - Chr4:91051737-91051756 None:intergenic 45.0%
CTCTCAATTCTCATGTGGCA+GGG + Chr4:91049098-91049117 MsG0480023900.01.T01:intron 45.0%
GCCACATCACCATTCATGAA+TGG + Chr4:91051696-91051715 MsG0480023900.01.T01:CDS 45.0%
GGATGGAATTGCACCAATTG+GGG + Chr4:91049763-91049782 MsG0480023900.01.T01:CDS 45.0%
GGGATGGAATTGCACCAATT+GGG + Chr4:91049762-91049781 MsG0480023900.01.T01:CDS 45.0%
GGTGATAGGAGAAGTGGTTA+TGG + Chr4:91049119-91049138 MsG0480023900.01.T01:CDS 45.0%
GTTAATGTCTCGGATGGGAA+TGG - Chr4:91051160-91051179 None:intergenic 45.0%
GTTACCTTTCTGAGCCTAAG+AGG - Chr4:91050635-91050654 None:intergenic 45.0%
TGGGCTCTCACTTTAATCTC+TGG + Chr4:91051921-91051940 MsG0480023900.01.T01:three_prime_UTR 45.0%
TGTCTGTAGTTGACCCTCTT+AGG + Chr4:91050618-91050637 MsG0480023900.01.T01:CDS 45.0%
TGTGAATCTGGGAAGCTGTA+AGG - Chr4:91051726-91051745 None:intergenic 45.0%
TTGCAGTGAGTAGCTATAGG+TGG - Chr4:91048779-91048798 None:intergenic 45.0%
TTGGGTGTGCTAGACTTGTA+GGG - Chr4:91049595-91049614 None:intergenic 45.0%
! CAAAGTGTCCGAATTCGTGA+AGG + Chr4:91049866-91049885 MsG0480023900.01.T01:CDS 45.0%
! CACAAATAGGTTGCATCGAC+TGG + Chr4:91051661-91051680 MsG0480023900.01.T01:CDS 45.0%
! GCAAAACCTTTTCTCTGGCT+TGG + Chr4:91049152-91049171 MsG0480023900.01.T01:CDS 45.0%
! GCCATTCATGAATGGTGATG+TGG - Chr4:91051700-91051719 None:intergenic 45.0%
! GTTGCTGTTAGAATTGCTCC+TGG + Chr4:91049836-91049855 MsG0480023900.01.T01:CDS 45.0%
! TGCTAGATGGAATGAGTTGG+AGG + Chr4:91051315-91051334 MsG0480023900.01.T01:CDS 45.0%
! TGCTAGCAGATTTTAGGCGT+TGG + Chr4:91050988-91051007 MsG0480023900.01.T01:intron 45.0%
!!! TTTTTGTTTAATTTATTTTA+CGG + Chr4:91050332-91050351 MsG0480023900.01.T01:intron 5.0%
!!! TTTTTTTTTTTATAAAGAAA+AGG + Chr4:91049318-91049337 MsG0480023900.01.T01:intron 5.0%
CAGTGAGTAGCTATAGGTGG+AGG - Chr4:91048776-91048795 None:intergenic 50.0%
CCACCGTCTGATTGTGAATC+TGG - Chr4:91051738-91051757 None:intergenic 50.0%
CCAGATTCACAATCAGACGG+TGG + Chr4:91051735-91051754 MsG0480023900.01.T01:CDS 50.0%
CGGTCATGCCTTCACGAATT+CGG - Chr4:91049877-91049896 None:intergenic 50.0%
GGATGGTAAATTGAGGACCG+CGG - Chr4:91051089-91051108 None:intergenic 50.0%
GGGAAAAGGCCATTGCTTAC+AGG + Chr4:91049719-91049738 MsG0480023900.01.T01:CDS 50.0%
TGACCCTCTTAGGCTCAGAA+AGG + Chr4:91050628-91050647 MsG0480023900.01.T01:CDS 50.0%
TGTCTCGGATGGGAATGGTT+TGG - Chr4:91051155-91051174 None:intergenic 50.0%
TTCTCATGTGGCAGGGTGAT+AGG + Chr4:91049105-91049124 MsG0480023900.01.T01:intron 50.0%
! CGGACACTTTGATTAGTCCC+AGG - Chr4:91049857-91049876 None:intergenic 50.0%
TGGCAGGGTGATAGGAGAAG+TGG + Chr4:91049113-91049132 MsG0480023900.01.T01:intron 55.0%
Chromosome Type Strat End Strand Name
Chr4 gene 91048766 91051957 91048766 ID=MsG0480023900.01;Name=MsG0480023900.01
Chr4 mRNA 91048766 91051957 91048766 ID=MsG0480023900.01.T01;Parent=MsG0480023900.01;Name=MsG0480023900.01.T01;_AED=0.26;_eAED=0.26;_QI=90|1|1|1|1|1|7|181|476
Chr4 exon 91048766 91048950 91048766 ID=MsG0480023900.01.T01:exon:33884;Parent=MsG0480023900.01.T01
Chr4 exon 91049119 91049194 91049119 ID=MsG0480023900.01.T01:exon:33885;Parent=MsG0480023900.01.T01
Chr4 exon 91049371 91049929 91049371 ID=MsG0480023900.01.T01:exon:33886;Parent=MsG0480023900.01.T01
Chr4 exon 91050489 91050649 91050489 ID=MsG0480023900.01.T01:exon:33887;Parent=MsG0480023900.01.T01
Chr4 exon 91050997 91051194 91050997 ID=MsG0480023900.01.T01:exon:33888;Parent=MsG0480023900.01.T01
Chr4 exon 91051283 91051382 91051283 ID=MsG0480023900.01.T01:exon:33889;Parent=MsG0480023900.01.T01
Chr4 exon 91051535 91051957 91051535 ID=MsG0480023900.01.T01:exon:33890;Parent=MsG0480023900.01.T01
Chr4 five_prime_UTR 91048766 91048855 91048766 ID=MsG0480023900.01.T01:five_prime_utr;Parent=MsG0480023900.01.T01
Chr4 CDS 91048856 91048950 91048856 ID=MsG0480023900.01.T01:cds;Parent=MsG0480023900.01.T01
Chr4 CDS 91049119 91049194 91049119 ID=MsG0480023900.01.T01:cds;Parent=MsG0480023900.01.T01
Chr4 CDS 91049371 91049929 91049371 ID=MsG0480023900.01.T01:cds;Parent=MsG0480023900.01.T01
Chr4 CDS 91050489 91050649 91050489 ID=MsG0480023900.01.T01:cds;Parent=MsG0480023900.01.T01
Chr4 CDS 91050997 91051194 91050997 ID=MsG0480023900.01.T01:cds;Parent=MsG0480023900.01.T01
Chr4 CDS 91051283 91051382 91051283 ID=MsG0480023900.01.T01:cds;Parent=MsG0480023900.01.T01
Chr4 CDS 91051535 91051776 91051535 ID=MsG0480023900.01.T01:cds;Parent=MsG0480023900.01.T01
Chr4 three_prime_UTR 91051777 91051957 91051777 ID=MsG0480023900.01.T01:three_prime_utr;Parent=MsG0480023900.01.T01
Gene Sequence

>MsG0480023900.01.T01

ATGGCTGCAAAACGGTTTTTCGATGATTCTAATCAAGACAAAGACAAACCAAATGACAAACGGATAAGAACTGCAACAATACCTTCTTTTGCTTCGGTGATAGGAGAAGTGGTTATGGTGAAAAACATGCAAAACCTTTTCTCTGGCTTGGAACCTTTACTTAGAAGAGTGGTGAATGAGGAGGTTGAACGAGCAATGAGACAATGTTATCCACCACGATCAATAACAAAGTCACCTTCATTGAGACTTCAAGCAATGGAACAACCATTAAGTTTGCAATTCATGTTCAAAAATAAACTTTCACTTCCAATATTCACAGGTAGCAAAATACTAGACACGGATGGAAACCCAATCAGTGTGATTCTTGTTGACCAAAGCAATGACCAAATAGTCCCTACAAGTCTAGCACACCCAATCAAGATAGAAATTGTAGTCCTTGATGGAGATTTTCCTTCTAGTGAAAATGAATCATCATGGACTAGTGAGGAATTCAATAACTGTATTGTGAAAGAGAGAACTGGGAAAAGGCCATTGCTTACAGGAGAATTGAATCTTACTATGAGGGATGGAATTGCACCAATTGGGGATATTGAGTTCACCGATAATTCTAGCTGGATACGTAGTAGAAAGTTTAGAGTTGCTGTTAGAATTGCTCCTGGGACTAATCAAAGTGTCCGAATTCGTGAAGGCATGACCGAAGCTTTTGTTGTTAAGGATCACCGTGGCGAATTGTACAAGAAACATCATCCACCAAGTCTAAAGGATGAAGTTTGGCGTTTAGAGAAGATTGGTAAAGACGGAGCTTTTCACAAAAAGTTGACCTCAGAAGGGATTACAACAGTTCAAGAGTTTCTCAAGTTGTCTGTAGTTGACCCTCTTAGGCTCAGAAAGATTTTAGGCGTTGGTATGTCCGAGAAAATGTGGGATGTGACAATTAAGCATGCAAAGACTTGTGTAATGGGAAACAAACTCTATGTCTACCGCGGTCCTCAATTTACCATCCATTTGAATGCAATATGCCAAATGGTTAGAGCTAACATCAATGGCCAAACCATTCCCATCCGAGACATTAACAACACATTGGGCAAGAGCTACATACAAAACTATGTGAGAGAAGCATATGCTAGATGGAATGAGTTGGAGGAAATTGATGATGTTTTGAATGACAACGTTGCTTTGTTAACTCAAGGTGAAACCATGGAGCAATTTCCAAACAATAATCATCAAGCACCAGTTATAACATATGATCAAAACAACTATTTTGGTGATAATTGTCTAGAGACCGGCAACTATGTAGCAAACAACAACAATAATGCACAAATAGGTTGCATCGACTGGTCATCATCATTTGCCACATCACCATTCATGAATGGCCTACCTTACAGCTTCCCAGATTCACAATCAGACGGTGGTGATATAACACCTCATTGA
Protein sequence

>MsG0480023900.01.T01

MAAKRFFDDSNQDKDKPNDKRIRTATIPSFASVIGEVVMVKNMQNLFSGLEPLLRRVVNEEVERAMRQCYPPRSITKSPSLRLQAMEQPLSLQFMFKNKLSLPIFTGSKILDTDGNPISVILVDQSNDQIVPTSLAHPIKIEIVVLDGDFPSSENESSWTSEEFNNCIVKERTGKRPLLTGELNLTMRDGIAPIGDIEFTDNSSWIRSRKFRVAVRIAPGTNQSVRIREGMTEAFVVKDHRGELYKKHHPPSLKDEVWRLEKIGKDGAFHKKLTSEGITTVQEFLKLSVVDPLRLRKILGVGMSEKMWDVTIKHAKTCVMGNKLYVYRGPQFTIHLNAICQMVRANINGQTIPIRDINNTLGKSYIQNYVREAYARWNELEEIDDVLNDNVALLTQGETMEQFPNNNHQAPVITYDQNNYFGDNCLETGNYVANNNNNAQIGCIDWSSSFATSPFMNGLPYSFPDSQSDGGDITPH*