Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016708.01.T01 | XP_013461494.1 | 93.519 | 324 | 7 | 3 | 1 | 324 | 1 | 310 | 0 | 605 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016708.01.T01 | Q9LY00 | 44.144 | 222 | 106 | 5 | 13 | 234 | 7 | 210 | 1.45E-49 | 170 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016708.01.T01 | A0A072V0I2 | 93.519 | 324 | 7 | 3 | 1 | 324 | 1 | 310 | 0.0 | 605 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0380016708.01.T01 | TF | WRKY |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000526.01 | MsG0380016708.01 | 0.807540 | 4.807948e-50 | 2.685047e-47 |
| MsG0180000653.01 | MsG0380016708.01 | 0.835722 | 1.421961e-56 | 1.753743e-53 |
| MsG0180004404.01 | MsG0380016708.01 | 0.813677 | 2.267523e-51 | 1.490447e-48 |
| MsG0180005278.01 | MsG0380016708.01 | 0.802813 | 4.694087e-49 | 2.321646e-46 |
| MsG0380015001.01 | MsG0380016708.01 | 0.819836 | 9.421799e-53 | 7.331546e-50 |
| MsG0380015005.01 | MsG0380016708.01 | 0.847905 | 8.599492e-60 | 1.551375e-56 |
| MsG0380015852.01 | MsG0380016708.01 | 0.815750 | 7.876731e-52 | 5.477633e-49 |
| MsG0380016708.01 | MsG0480022099.01 | 0.826294 | 2.934989e-54 | 2.741207e-51 |
| MsG0380016708.01 | MsG0480023383.01 | 0.829586 | 4.738260e-55 | 4.870498e-52 |
| MsG0380016708.01 | MsG0480023898.01 | 0.862868 | 3.735859e-64 | 1.110691e-60 |
| MsG0380016708.01 | MsG0480023900.01 | 0.868707 | 5.346650e-66 | 1.953217e-62 |
| MsG0380016708.01 | MsG0580025739.01 | 0.804571 | 2.026417e-49 | 1.048410e-46 |
| MsG0380016708.01 | MsG0680030694.01 | 0.810166 | 1.319465e-50 | 7.896897e-48 |
| MsG0380016708.01 | MsG0680030695.01 | 0.864115 | 1.533475e-64 | 4.759984e-61 |
| MsG0380016708.01 | MsG0780039433.01 | 0.819968 | 8.790434e-53 | 6.865634e-50 |
| MsG0380016708.01 | MsG0780041753.01 | 0.802869 | 4.572426e-49 | 2.264515e-46 |
| MsG0380016708.01 | MsG0880045590.01 | 0.830389 | 3.019334e-55 | 3.176525e-52 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016708.01.T01 | MTR_3g093830 | 93.519 | 324 | 7 | 3 | 1 | 324 | 1 | 310 | 0.0 | 605 |
| MsG0380016708.01.T01 | MTR_5g067700 | 40.741 | 297 | 97 | 12 | 5 | 289 | 5 | 234 | 5.62e-53 | 174 |
| MsG0380016708.01.T01 | MTR_7g073380 | 39.000 | 200 | 93 | 5 | 17 | 210 | 15 | 191 | 5.72e-38 | 137 |
| MsG0380016708.01.T01 | MTR_7g073430 | 37.915 | 211 | 100 | 7 | 7 | 210 | 4 | 190 | 2.29e-35 | 130 |
| MsG0380016708.01.T01 | MTR_0002s1250 | 38.806 | 201 | 99 | 6 | 18 | 216 | 8 | 186 | 1.30e-34 | 127 |
| MsG0380016708.01.T01 | MTR_8g005750 | 38.571 | 210 | 97 | 6 | 18 | 226 | 6 | 184 | 3.74e-31 | 118 |
| MsG0380016708.01.T01 | MTR_3g090860 | 33.190 | 232 | 123 | 9 | 15 | 229 | 5 | 221 | 1.22e-24 | 102 |
| MsG0380016708.01.T01 | MTR_2g075680 | 32.819 | 259 | 132 | 10 | 14 | 256 | 13 | 245 | 1.37e-24 | 101 |
| MsG0380016708.01.T01 | MTR_2g075690 | 33.772 | 228 | 125 | 7 | 3 | 222 | 5 | 214 | 2.47e-24 | 100 |
| MsG0380016708.01.T01 | MTR_2g075700 | 34.783 | 230 | 115 | 8 | 9 | 222 | 7 | 217 | 4.56e-23 | 97.4 |
| MsG0380016708.01.T01 | MTR_8g032510 | 34.091 | 220 | 107 | 9 | 18 | 226 | 9 | 201 | 6.83e-23 | 96.7 |
| MsG0380016708.01.T01 | MTR_7g117200 | 30.097 | 206 | 126 | 4 | 7 | 212 | 2 | 189 | 3.18e-21 | 92.8 |
| MsG0380016708.01.T01 | MTR_8g027860 | 56.716 | 67 | 29 | 0 | 134 | 200 | 129 | 195 | 1.74e-20 | 90.9 |
| MsG0380016708.01.T01 | MTR_8g099350 | 33.679 | 193 | 106 | 6 | 17 | 200 | 12 | 191 | 6.93e-20 | 89.4 |
| MsG0380016708.01.T01 | MTR_2g075750 | 42.529 | 87 | 49 | 1 | 140 | 226 | 27 | 112 | 3.51e-19 | 84.0 |
| MsG0380016708.01.T01 | MTR_2g075610 | 50.794 | 63 | 31 | 0 | 142 | 204 | 30 | 92 | 1.51e-18 | 82.4 |
| MsG0380016708.01.T01 | MTR_5g067680 | 35.938 | 128 | 75 | 1 | 87 | 207 | 141 | 268 | 3.37e-18 | 84.7 |
| MsG0380016708.01.T01 | MTR_5g073620 | 39.706 | 68 | 41 | 0 | 142 | 209 | 673 | 740 | 1.15e-12 | 69.3 |
| MsG0380016708.01.T01 | MTR_7g028415 | 46.377 | 69 | 33 | 2 | 131 | 199 | 84 | 148 | 4.00e-12 | 64.3 |
| MsG0380016708.01.T01 | MTR_7g028710 | 46.377 | 69 | 33 | 2 | 131 | 199 | 84 | 148 | 4.00e-12 | 64.3 |
| MsG0380016708.01.T01 | MTR_4g127040 | 40.000 | 90 | 44 | 2 | 125 | 206 | 221 | 308 | 6.46e-12 | 65.9 |
| MsG0380016708.01.T01 | MTR_7g079010 | 34.579 | 107 | 58 | 3 | 102 | 206 | 109 | 205 | 7.45e-12 | 64.3 |
| MsG0380016708.01.T01 | MTR_8g098945 | 46.154 | 65 | 33 | 1 | 134 | 198 | 122 | 184 | 8.01e-12 | 65.1 |
| MsG0380016708.01.T01 | MTR_8g028565 | 41.026 | 78 | 41 | 2 | 125 | 199 | 136 | 211 | 1.25e-11 | 65.1 |
| MsG0380016708.01.T01 | MTR_1g009613 | 38.462 | 91 | 44 | 3 | 125 | 205 | 238 | 326 | 1.49e-11 | 64.7 |
| MsG0380016708.01.T01 | MTR_5g043880 | 38.372 | 86 | 49 | 2 | 142 | 227 | 125 | 206 | 2.01e-11 | 63.9 |
| MsG0380016708.01.T01 | MTR_8g096730 | 32.110 | 109 | 64 | 3 | 90 | 198 | 26 | 124 | 7.38e-11 | 60.1 |
| MsG0380016708.01.T01 | MTR_7g062220 | 52.632 | 57 | 24 | 1 | 142 | 198 | 125 | 178 | 8.78e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016708.01.T01 | AT3G56400 | 44.144 | 222 | 106 | 5 | 13 | 234 | 7 | 210 | 1.48e-50 | 170 |
| MsG0380016708.01.T01 | AT2G40750 | 34.259 | 324 | 185 | 7 | 10 | 310 | 8 | 326 | 1.98e-46 | 160 |
| MsG0380016708.01.T01 | AT5G24110 | 34.715 | 193 | 89 | 7 | 13 | 200 | 12 | 172 | 6.40e-23 | 97.1 |
| MsG0380016708.01.T01 | AT2G46400 | 30.357 | 224 | 102 | 5 | 13 | 226 | 4 | 183 | 9.11e-22 | 93.6 |
| MsG0380016708.01.T01 | AT4G11070 | 31.280 | 211 | 121 | 7 | 13 | 208 | 7 | 208 | 1.15e-21 | 94.0 |
| MsG0380016708.01.T01 | AT1G66550 | 34.054 | 185 | 97 | 4 | 18 | 202 | 10 | 169 | 2.72e-21 | 91.7 |
| MsG0380016708.01.T01 | AT1G66550 | 34.595 | 185 | 91 | 6 | 18 | 202 | 10 | 164 | 6.29e-21 | 90.5 |
| MsG0380016708.01.T01 | AT1G66560 | 27.642 | 246 | 140 | 6 | 11 | 250 | 3 | 216 | 6.91e-20 | 87.8 |
| MsG0380016708.01.T01 | AT5G22570 | 28.704 | 216 | 114 | 4 | 18 | 217 | 11 | 202 | 7.49e-20 | 88.2 |
| MsG0380016708.01.T01 | AT1G66600 | 29.752 | 242 | 136 | 5 | 18 | 259 | 10 | 217 | 9.39e-20 | 87.0 |
| MsG0380016708.01.T01 | AT5G01900 | 32.973 | 185 | 100 | 4 | 18 | 201 | 9 | 170 | 3.12e-19 | 86.3 |
| MsG0380016708.01.T01 | AT4G11070 | 29.126 | 206 | 100 | 6 | 13 | 208 | 7 | 176 | 1.19e-18 | 84.7 |
| MsG0380016708.01.T01 | AT2G40740 | 44.186 | 86 | 42 | 1 | 142 | 221 | 174 | 259 | 2.37e-18 | 84.3 |
| MsG0380016708.01.T01 | AT2G40740 | 44.186 | 86 | 42 | 1 | 142 | 221 | 183 | 268 | 3.15e-18 | 84.0 |
| MsG0380016708.01.T01 | AT4G23810 | 50.704 | 71 | 34 | 1 | 142 | 211 | 159 | 229 | 5.30e-18 | 83.6 |
| MsG0380016708.01.T01 | AT5G45260 | 35.714 | 154 | 92 | 4 | 47 | 198 | 1117 | 1265 | 3.02e-16 | 80.1 |
| MsG0380016708.01.T01 | AT1G80590 | 32.432 | 185 | 77 | 5 | 18 | 202 | 10 | 146 | 1.15e-14 | 72.8 |
| MsG0380016708.01.T01 | AT4G23550 | 49.153 | 59 | 28 | 1 | 140 | 198 | 139 | 195 | 7.16e-12 | 65.9 |
| MsG0380016708.01.T01 | AT5G52830 | 41.772 | 79 | 40 | 2 | 125 | 199 | 145 | 221 | 7.28e-12 | 65.9 |
| MsG0380016708.01.T01 | AT5G13080 | 43.243 | 74 | 38 | 2 | 126 | 199 | 53 | 122 | 2.50e-11 | 61.2 |
| MsG0380016708.01.T01 | AT2G46130 | 42.029 | 69 | 35 | 2 | 140 | 206 | 29 | 94 | 2.56e-11 | 60.5 |
| MsG0380016708.01.T01 | AT4G01250 | 38.961 | 77 | 42 | 3 | 125 | 198 | 109 | 183 | 5.68e-11 | 62.8 |
| MsG0380016708.01.T01 | AT1G69310 | 30.216 | 139 | 78 | 5 | 96 | 229 | 97 | 221 | 8.43e-11 | 62.4 |
| MsG0380016708.01.T01 | AT1G69310 | 30.216 | 139 | 78 | 5 | 96 | 229 | 97 | 221 | 8.43e-11 | 62.4 |
| MsG0380016708.01.T01 | AT1G69310 | 30.216 | 139 | 78 | 5 | 96 | 229 | 97 | 221 | 8.43e-11 | 62.4 |
| MsG0380016708.01.T01 | AT1G30650 | 36.364 | 99 | 48 | 3 | 120 | 205 | 183 | 279 | 9.81e-11 | 62.8 |
Find 69 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAATCTTGAAATTGATTT+TGG | 0.027971 | 3:+86886829 | MsG0380016708.01.T01:CDS |
| TATGTAATTTGGTACATTTC+TGG | 0.119421 | 3:-86886496 | None:intergenic |
| AACACTCATTTGCTATATTT+TGG | 0.147599 | 3:-86884722 | None:intergenic |
| TTGTTGGCAGTGACAGTTTC+AGG | 0.206708 | 3:-86884751 | None:intergenic |
| TGCAACCTTGGTCATGCTTC+CGG | 0.212153 | 3:-86886438 | None:intergenic |
| CATTCTCTGAAGATACTAAT+TGG | 0.227820 | 3:+86886569 | MsG0380016708.01.T01:CDS |
| TGATGTTACTGACAACTTAT+TGG | 0.245112 | 3:+86886735 | MsG0380016708.01.T01:CDS |
| GTATATGATGATCAAATTAA+TGG | 0.270264 | 3:+86887134 | MsG0380016708.01.T01:three_prime_UTR |
| GCAACCTTGGTCATGCTTCC+GGG | 0.281835 | 3:-86886437 | None:intergenic |
| TTCTATCAATTGTACCTGTT+TGG | 0.295646 | 3:-86886467 | None:intergenic |
| TTAAAATCAGACCACAAATT+AGG | 0.299410 | 3:-86886760 | None:intergenic |
| CAGAATCATGTGAATCATTC+AGG | 0.322565 | 3:+86884967 | MsG0380016708.01.T01:CDS |
| CATGTGAATCATTCAGGTTC+AGG | 0.330373 | 3:+86884973 | MsG0380016708.01.T01:CDS |
| CCTACATATAATATCATATA+TGG | 0.331659 | 3:-86887051 | None:intergenic |
| AGTAGTACTGTCGTCGTTGT+TGG | 0.356608 | 3:-86886704 | None:intergenic |
| AAGAATCCTGTTTGTTCTGA+TGG | 0.357623 | 3:+86884841 | MsG0380016708.01.T01:CDS |
| GTCTCCTTCTGTTAAGGAAT+TGG | 0.359709 | 3:+86884864 | MsG0380016708.01.T01:CDS |
| GTTTGGTTGCTTTGCAACCT+TGG | 0.376612 | 3:-86886450 | None:intergenic |
| TAATTTGCAGGAGTTACTTC+AGG | 0.382346 | 3:+86886410 | MsG0380016708.01.T01:intron |
| GAAAGCCAATGTATGTAATT+TGG | 0.392701 | 3:-86886507 | None:intergenic |
| TCAGAGAATGAGACCATTTG+TGG | 0.397937 | 3:-86886556 | None:intergenic |
| TGATGGGTCTCCTTCTGTTA+AGG | 0.399624 | 3:+86884858 | MsG0380016708.01.T01:CDS |
| ACTCATAAAAGAGCTTCTTC+AGG | 0.399737 | 3:+86884783 | MsG0380016708.01.T01:CDS |
| CAATTGGTGACACTCATTCC+TGG | 0.409828 | 3:+86885316 | MsG0380016708.01.T01:CDS |
| TAAAACTTACAAATGGTAAC+TGG | 0.414491 | 3:-86887024 | None:intergenic |
| ATTCTCTGAAGATACTAATT+GGG | 0.419258 | 3:+86886570 | MsG0380016708.01.T01:CDS |
| GTAGTACTGTCGTCGTTGTT+GGG | 0.426318 | 3:-86886703 | None:intergenic |
| CCTCTTCGATCCTTTGTAGT+TGG | 0.426598 | 3:-86885078 | None:intergenic |
| ACCATAGTCTCTAAAACAAT+TGG | 0.428053 | 3:+86885300 | MsG0380016708.01.T01:CDS |
| TTCAGGGGAACATGGTTCAT+TGG | 0.430865 | 3:+86884990 | MsG0380016708.01.T01:CDS |
| AGAATCCTGTTTGTTCTGAT+GGG | 0.439454 | 3:+86884842 | MsG0380016708.01.T01:CDS |
| ACCTTGGGAAATTAGAATTG+AGG | 0.441878 | 3:-86885362 | None:intergenic |
| TCCTTCTGTTAAGGAATTGG+TGG | 0.442137 | 3:+86884867 | MsG0380016708.01.T01:CDS |
| AGACCATTTGTGGAGTTTGT+AGG | 0.471099 | 3:-86886546 | None:intergenic |
| GTAGGCGTGTGCATATATAA+AGG | 0.478171 | 3:+86887069 | MsG0380016708.01.T01:three_prime_UTR |
| CTTCTGACCGTACTTTCTCC+AGG | 0.478180 | 3:-86885334 | None:intergenic |
| ACTTATTGGATCCTAATTTG+TGG | 0.485951 | 3:+86886749 | MsG0380016708.01.T01:CDS |
| CACCCTACAAACTCCACAAA+TGG | 0.486229 | 3:+86886543 | MsG0380016708.01.T01:CDS |
| ATGTGAATCATTCAGGTTCA+GGG | 0.513638 | 3:+86884974 | MsG0380016708.01.T01:CDS |
| CTCATAAAAGAGCTTCTTCA+GGG | 0.513650 | 3:+86884784 | MsG0380016708.01.T01:CDS |
| CATTCAGGTTCAGGGGAACA+TGG | 0.514743 | 3:+86884982 | MsG0380016708.01.T01:CDS |
| GCAGGAATACACAATATCCT+TGG | 0.514816 | 3:-86886797 | None:intergenic |
| TGGCAGATAAAACTTACAAA+TGG | 0.519708 | 3:-86887031 | None:intergenic |
| AGGTTGCAAAGCAACCAAAC+AGG | 0.523803 | 3:+86886453 | MsG0380016708.01.T01:CDS |
| GACCATTTGTGGAGTTTGTA+GGG | 0.524922 | 3:-86886545 | None:intergenic |
| AGGGGAACATGGTTCATTGG+TGG | 0.531988 | 3:+86884993 | MsG0380016708.01.T01:CDS |
| GGAGACCCATCAGAACAAAC+AGG | 0.533380 | 3:-86884847 | None:intergenic |
| CACATGTTATTAGCTCAGAA+AGG | 0.537868 | 3:+86886659 | MsG0380016708.01.T01:CDS |
| GAAGAGGTTCCTACAAAAGA+AGG | 0.538026 | 3:+86885094 | MsG0380016708.01.T01:CDS |
| CCATATATGATATTATATGT+AGG | 0.552215 | 3:+86887051 | MsG0380016708.01.T01:three_prime_UTR |
| GCCACCAATTCCTTAACAGA+AGG | 0.556097 | 3:-86884868 | None:intergenic |
| TGAAGATTGTAGTTTAGATG+AGG | 0.565987 | 3:+86884939 | MsG0380016708.01.T01:CDS |
| ATGTACCAAATTACATACAT+TGG | 0.567198 | 3:+86886502 | MsG0380016708.01.T01:CDS |
| CTGGAGAAAGTACGGTCAGA+AGG | 0.567429 | 3:+86885335 | MsG0380016708.01.T01:CDS |
| TCCTCAATTCTAATTTCCCA+AGG | 0.568294 | 3:+86885361 | MsG0380016708.01.T01:CDS |
| GTCAGAACCTCCTTTGAGTG+AGG | 0.572819 | 3:-86886616 | None:intergenic |
| GGAGTTACTTCAGGTGCACC+CGG | 0.575709 | 3:+86886419 | MsG0380016708.01.T01:intron |
| ACTCATTCCTGGAGAAAGTA+CGG | 0.586004 | 3:+86885327 | MsG0380016708.01.T01:CDS |
| GAGATTGTCGCCAACTACAA+AGG | 0.592832 | 3:+86885068 | MsG0380016708.01.T01:CDS |
| GAATTCTAATCCTCACTCAA+AGG | 0.633382 | 3:+86886606 | MsG0380016708.01.T01:CDS |
| CATTTGTGGAGTTTGTAGGG+TGG | 0.641904 | 3:-86886542 | None:intergenic |
| TTCTAATCCTCACTCAAAGG+AGG | 0.641909 | 3:+86886609 | MsG0380016708.01.T01:CDS |
| TTGTCAGTAACATCACTCCT+CGG | 0.646183 | 3:-86886727 | None:intergenic |
| TGTGAATCATTCAGGTTCAG+GGG | 0.655461 | 3:+86884975 | MsG0380016708.01.T01:CDS |
| TGCACCCGGAAGCATGACCA+AGG | 0.656558 | 3:+86886433 | MsG0380016708.01.T01:CDS |
| GTACATCAAATTGACAGACG+TGG | 0.690360 | 3:-86886950 | None:intergenic |
| GCAGGAAAACAGATGAGACA+AGG | 0.691983 | 3:+86885277 | MsG0380016708.01.T01:intron |
| CCAACTACAAAGGATCGAAG+AGG | 0.701163 | 3:+86885078 | MsG0380016708.01.T01:CDS |
| ACGACGACAGTACTACTCCG+AGG | 0.763721 | 3:+86886710 | MsG0380016708.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAACTAATTAG+TGG | - | Chr3:86886234-86886253 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAACTAATTAGT+GGG | - | Chr3:86886233-86886252 | None:intergenic | 10.0% |
| !! | GATATTTATTAAAATTGATT+TGG | + | Chr3:86885629-86885648 | MsG0380016708.01.T01:intron | 10.0% |
| !!! | AAATTTTACACTTAAATTTA+TGG | + | Chr3:86885710-86885729 | MsG0380016708.01.T01:intron | 10.0% |
| !! | ATATAATCTCATTTCAAAAT+CGG | - | Chr3:86886189-86886208 | None:intergenic | 15.0% |
| !! | TTAAGTGTAAAATTTACTTT+GGG | - | Chr3:86885705-86885724 | None:intergenic | 15.0% |
| !! | TTTAAGTGTAAAATTTACTT+TGG | - | Chr3:86885706-86885725 | None:intergenic | 15.0% |
| !!! | AAAATCTTGAAATTGATTTT+GGG | + | Chr3:86886830-86886849 | MsG0380016708.01.T01:CDS | 15.0% |
| !! | AACTATAAAGTCTATACAAA+AGG | - | Chr3:86886104-86886123 | None:intergenic | 20.0% |
| !! | CCATATATGATATTATATGT+AGG | + | Chr3:86887051-86887070 | MsG0380016708.01.T01:three_prime_UTR | 20.0% |
| !! | CCTACATATAATATCATATA+TGG | - | Chr3:86887054-86887073 | None:intergenic | 20.0% |
| !! | GAATTGATTAACTAATTAGT+GGG | - | Chr3:86886271-86886290 | None:intergenic | 20.0% |
| !! | GTATATGATGATCAAATTAA+TGG | + | Chr3:86887134-86887153 | MsG0380016708.01.T01:three_prime_UTR | 20.0% |
| !! | TAAGTGTAAAATTTACTTTG+GGG | - | Chr3:86885704-86885723 | None:intergenic | 20.0% |
| !! | TAGAAAACAAAAAAATCAAC+AGG | - | Chr3:86885191-86885210 | None:intergenic | 20.0% |
| !! | TGAATTGATTAACTAATTAG+TGG | - | Chr3:86886272-86886291 | None:intergenic | 20.0% |
| !! | TTACACTTAAATTTATGGTT+AGG | + | Chr3:86885715-86885734 | MsG0380016708.01.T01:intron | 20.0% |
| !! | TTAGATGTGTATAATTGATT+TGG | + | Chr3:86885594-86885613 | MsG0380016708.01.T01:intron | 20.0% |
| !! | TTATAGTTTCAACAAAATCA+TGG | + | Chr3:86886116-86886135 | MsG0380016708.01.T01:intron | 20.0% |
| !! | TTTATTCTTAATTATTCTGC+AGG | + | Chr3:86885259-86885278 | MsG0380016708.01.T01:intron | 20.0% |
| !!! | AAATCTTGAAATTGATTTTG+GGG | + | Chr3:86886831-86886850 | MsG0380016708.01.T01:CDS | 20.0% |
| !!! | CAAAATCTTGAAATTGATTT+TGG | + | Chr3:86886829-86886848 | MsG0380016708.01.T01:CDS | 20.0% |
| ! | ACTTGCTCATATTGTATAAA+TGG | - | Chr3:86885462-86885481 | None:intergenic | 25.0% |
| ! | AGGAAAATAATGATTACCTT+GGG | - | Chr3:86885380-86885399 | None:intergenic | 25.0% |
| ! | ATGTACCAAATTACATACAT+TGG | + | Chr3:86886502-86886521 | MsG0380016708.01.T01:CDS | 25.0% |
| ! | TAAAACTTACAAATGGTAAC+TGG | - | Chr3:86887027-86887046 | None:intergenic | 25.0% |
| ! | TACTAGTATACAAATTAACC+CGG | + | Chr3:86886308-86886327 | MsG0380016708.01.T01:intron | 25.0% |
| ! | TATGTAATTTGGTACATTTC+TGG | - | Chr3:86886499-86886518 | None:intergenic | 25.0% |
| ! | TCAACTCTTACAAAATCAAT+TGG | + | Chr3:86885806-86885825 | MsG0380016708.01.T01:intron | 25.0% |
| ! | TGAGATTATATACTATCAAG+TGG | + | Chr3:86886198-86886217 | MsG0380016708.01.T01:intron | 25.0% |
| ! | TTAAAATCAGACCACAAATT+AGG | - | Chr3:86886763-86886782 | None:intergenic | 25.0% |
| !! | AAAATAGTACCTTCTTTTGT+AGG | - | Chr3:86885106-86885125 | None:intergenic | 25.0% |
| !! | ATTCTCTGAAGATACTAATT+GGG | + | Chr3:86886570-86886589 | MsG0380016708.01.T01:CDS | 25.0% |
| !!! | AACACTCATTTGCTATATTT+TGG | - | Chr3:86884725-86884744 | None:intergenic | 25.0% |
| !!! | AAGAAGGTACTATTTTTGTA+CGG | + | Chr3:86885110-86885129 | MsG0380016708.01.T01:intron | 25.0% |
| !!! | AGATTATAGAAGCATTTTAG+AGG | + | Chr3:86885566-86885585 | MsG0380016708.01.T01:intron | 25.0% |
| !!! | TAATTTGTGGTCTGATTTTA+AGG | + | Chr3:86886762-86886781 | MsG0380016708.01.T01:CDS | 25.0% |
| AAATCAGTAGAAAAAAGCAG+AGG | - | Chr3:86885400-86885419 | None:intergenic | 30.0% | |
| ACTAGTATACAAATTAACCC+GGG | + | Chr3:86886309-86886328 | MsG0380016708.01.T01:intron | 30.0% | |
| ACTTATTGGATCCTAATTTG+TGG | + | Chr3:86886749-86886768 | MsG0380016708.01.T01:CDS | 30.0% | |
| ATGTGCATGTTTCAATATCA+TGG | + | Chr3:86885855-86885874 | MsG0380016708.01.T01:intron | 30.0% | |
| CCTGCAAATTATCATTGAAA+AGG | - | Chr3:86886401-86886420 | None:intergenic | 30.0% | |
| GAAAGCCAATGTATGTAATT+TGG | - | Chr3:86886510-86886529 | None:intergenic | 30.0% | |
| GAGGAAAATAATGATTACCT+TGG | - | Chr3:86885381-86885400 | None:intergenic | 30.0% | |
| TGAAGATTGTAGTTTAGATG+AGG | + | Chr3:86884939-86884958 | MsG0380016708.01.T01:CDS | 30.0% | |
| TGATGTTACTGACAACTTAT+TGG | + | Chr3:86886735-86886754 | MsG0380016708.01.T01:CDS | 30.0% | |
| TGGCAGATAAAACTTACAAA+TGG | - | Chr3:86887034-86887053 | None:intergenic | 30.0% | |
| TTCTATCAATTGTACCTGTT+TGG | - | Chr3:86886470-86886489 | None:intergenic | 30.0% | |
| TTGGAATGAAATGAAAACGT+GGG | + | Chr3:86885163-86885182 | MsG0380016708.01.T01:intron | 30.0% | |
| ! | CATGTTTTCTTTTTCCTTGT+TGG | + | Chr3:86885144-86885163 | MsG0380016708.01.T01:intron | 30.0% |
| ! | CATTCTCTGAAGATACTAAT+TGG | + | Chr3:86886569-86886588 | MsG0380016708.01.T01:CDS | 30.0% |
| ! | GTTTTCATTTCATTCCAACA+AGG | - | Chr3:86885161-86885180 | None:intergenic | 30.0% |
| ! | TATGAGTAGCTTCTTTTTGT+TGG | - | Chr3:86884770-86884789 | None:intergenic | 30.0% |
| !! | ACCATAGTCTCTAAAACAAT+TGG | + | Chr3:86885300-86885319 | MsG0380016708.01.T01:CDS | 30.0% |
| !! | CACAGTTGGCAAATTTTAAT+TGG | - | Chr3:86886036-86886055 | None:intergenic | 30.0% |
| !! | CCTTTTCAATGATAATTTGC+AGG | + | Chr3:86886398-86886417 | MsG0380016708.01.T01:intron | 30.0% |
| !! | TATGGTTAGGTTCACTTTTA+CGG | + | Chr3:86885728-86885747 | MsG0380016708.01.T01:intron | 30.0% |
| !!! | ACCAATTGTTTTAGAGACTA+TGG | - | Chr3:86885304-86885323 | None:intergenic | 30.0% |
| !!! | AGAATTTTTCAAGACACAGT+TGG | - | Chr3:86886050-86886069 | None:intergenic | 30.0% |
| !!! | TTTGCTATATTTTGGTGTAG+TGG | - | Chr3:86884717-86884736 | None:intergenic | 30.0% |
| AAGAATCCTGTTTGTTCTGA+TGG | + | Chr3:86884841-86884860 | MsG0380016708.01.T01:CDS | 35.0% | |
| ACCTTGGGAAATTAGAATTG+AGG | - | Chr3:86885365-86885384 | None:intergenic | 35.0% | |
| ACTCATAAAAGAGCTTCTTC+AGG | + | Chr3:86884783-86884802 | MsG0380016708.01.T01:CDS | 35.0% | |
| AGAATCCTGTTTGTTCTGAT+GGG | + | Chr3:86884842-86884861 | MsG0380016708.01.T01:CDS | 35.0% | |
| ATAGCAGATGTTTGGTTATG+CGG | - | Chr3:86885837-86885856 | None:intergenic | 35.0% | |
| CACATGTTATTAGCTCAGAA+AGG | + | Chr3:86886659-86886678 | MsG0380016708.01.T01:CDS | 35.0% | |
| CAGAATCATGTGAATCATTC+AGG | + | Chr3:86884967-86884986 | MsG0380016708.01.T01:CDS | 35.0% | |
| CTCATAAAAGAGCTTCTTCA+GGG | + | Chr3:86884784-86884803 | MsG0380016708.01.T01:CDS | 35.0% | |
| GAATTCTAATCCTCACTCAA+AGG | + | Chr3:86886606-86886625 | MsG0380016708.01.T01:CDS | 35.0% | |
| GCATTATTTGCCACAATTCA+AGG | + | Chr3:86885971-86885990 | MsG0380016708.01.T01:intron | 35.0% | |
| GGCAAATAATGCATTGTGAT+TGG | - | Chr3:86885963-86885982 | None:intergenic | 35.0% | |
| GTTGGAATGAAATGAAAACG+TGG | + | Chr3:86885162-86885181 | MsG0380016708.01.T01:intron | 35.0% | |
| TCCTCAATTCTAATTTCCCA+AGG | + | Chr3:86885361-86885380 | MsG0380016708.01.T01:CDS | 35.0% | |
| TTATTTGCCACAATTCAAGG+AGG | + | Chr3:86885974-86885993 | MsG0380016708.01.T01:intron | 35.0% | |
| ! | ATGTGAATCATTCAGGTTCA+GGG | + | Chr3:86884974-86884993 | MsG0380016708.01.T01:CDS | 35.0% |
| ! | TAAGGATTTTGAACTCTCCA+AGG | + | Chr3:86886780-86886799 | MsG0380016708.01.T01:CDS | 35.0% |
| ! | TAATTTGCAGGAGTTACTTC+AGG | + | Chr3:86886410-86886429 | MsG0380016708.01.T01:intron | 35.0% |
| !!! | AAGATTTTGAGATTCAGTGC+AGG | - | Chr3:86886818-86886837 | None:intergenic | 35.0% |
| !!! | ACTATTTTTGTACGGACACA+AGG | + | Chr3:86885118-86885137 | MsG0380016708.01.T01:intron | 35.0% |
| !!! | ATATTTTGGTGTAGTGGATC+AGG | - | Chr3:86884711-86884730 | None:intergenic | 35.0% |
| ACATGCACATAGCAGATGTT+TGG | - | Chr3:86885845-86885864 | None:intergenic | 40.0% | |
| ACTCATTCCTGGAGAAAGTA+CGG | + | Chr3:86885327-86885346 | MsG0380016708.01.T01:CDS | 40.0% | |
| AGACCATTTGTGGAGTTTGT+AGG | - | Chr3:86886549-86886568 | None:intergenic | 40.0% | |
| GAAGAGGTTCCTACAAAAGA+AGG | + | Chr3:86885094-86885113 | MsG0380016708.01.T01:CDS | 40.0% | |
| GACCATTTGTGGAGTTTGTA+GGG | - | Chr3:86886548-86886567 | None:intergenic | 40.0% | |
| GCAGGAATACACAATATCCT+TGG | - | Chr3:86886800-86886819 | None:intergenic | 40.0% | |
| GTACATCAAATTGACAGACG+TGG | - | Chr3:86886953-86886972 | None:intergenic | 40.0% | |
| GTAGGCGTGTGCATATATAA+AGG | + | Chr3:86887069-86887088 | MsG0380016708.01.T01:three_prime_UTR | 40.0% | |
| GTCTCCTTCTGTTAAGGAAT+TGG | + | Chr3:86884864-86884883 | MsG0380016708.01.T01:CDS | 40.0% | |
| TAGCAGATGTTTGGTTATGC+GGG | - | Chr3:86885836-86885855 | None:intergenic | 40.0% | |
| TCAGAGAATGAGACCATTTG+TGG | - | Chr3:86886559-86886578 | None:intergenic | 40.0% | |
| TCCTTCTGTTAAGGAATTGG+TGG | + | Chr3:86884867-86884886 | MsG0380016708.01.T01:CDS | 40.0% | |
| TGTGGCTGAAAAATAGGAAG+TGG | + | Chr3:86885997-86886016 | MsG0380016708.01.T01:intron | 40.0% | |
| TTCTAATCCTCACTCAAAGG+AGG | + | Chr3:86886609-86886628 | MsG0380016708.01.T01:CDS | 40.0% | |
| TTGTCAGTAACATCACTCCT+CGG | - | Chr3:86886730-86886749 | None:intergenic | 40.0% | |
| ! | CATGTGAATCATTCAGGTTC+AGG | + | Chr3:86884973-86884992 | MsG0380016708.01.T01:CDS | 40.0% |
| ! | TGTGAATCATTCAGGTTCAG+GGG | + | Chr3:86884975-86884994 | MsG0380016708.01.T01:CDS | 40.0% |
| AAACACTATACCAGCTAGCC+CGG | - | Chr3:86886330-86886349 | None:intergenic | 45.0% | |
| AGGTTGCAAAGCAACCAAAC+AGG | + | Chr3:86886453-86886472 | MsG0380016708.01.T01:CDS | 45.0% | |
| AGTAGTACTGTCGTCGTTGT+TGG | - | Chr3:86886707-86886726 | None:intergenic | 45.0% | |
| CACCCTACAAACTCCACAAA+TGG | + | Chr3:86886543-86886562 | MsG0380016708.01.T01:CDS | 45.0% | |
| CATTTGTGGAGTTTGTAGGG+TGG | - | Chr3:86886545-86886564 | None:intergenic | 45.0% | |
| CCAACTACAAAGGATCGAAG+AGG | + | Chr3:86885078-86885097 | MsG0380016708.01.T01:CDS | 45.0% | |
| CCTCTTCGATCCTTTGTAGT+TGG | - | Chr3:86885081-86885100 | None:intergenic | 45.0% | |
| GAGATTGTCGCCAACTACAA+AGG | + | Chr3:86885068-86885087 | MsG0380016708.01.T01:CDS | 45.0% | |
| GCAGGAAAACAGATGAGACA+AGG | + | Chr3:86885277-86885296 | MsG0380016708.01.T01:intron | 45.0% | |
| GCCACCAATTCCTTAACAGA+AGG | - | Chr3:86884871-86884890 | None:intergenic | 45.0% | |
| GTAGTACTGTCGTCGTTGTT+GGG | - | Chr3:86886706-86886725 | None:intergenic | 45.0% | |
| TTCAGGGGAACATGGTTCAT+TGG | + | Chr3:86884990-86885009 | MsG0380016708.01.T01:CDS | 45.0% | |
| TTGTTGGCAGTGACAGTTTC+AGG | - | Chr3:86884754-86884773 | None:intergenic | 45.0% | |
| ! | AGGAGGTGTGGCTGAAAAAT+AGG | + | Chr3:86885991-86886010 | MsG0380016708.01.T01:intron | 45.0% |
| ! | CAATTGGTGACACTCATTCC+TGG | + | Chr3:86885316-86885335 | MsG0380016708.01.T01:CDS | 45.0% |
| ! | GTTTGGTTGCTTTGCAACCT+TGG | - | Chr3:86886453-86886472 | None:intergenic | 45.0% |
| ! | TGATGGGTCTCCTTCTGTTA+AGG | + | Chr3:86884858-86884877 | MsG0380016708.01.T01:CDS | 45.0% |
| !!! | TAGTAAAAAATATTTTTTAA+CGG | + | Chr3:86885523-86885542 | MsG0380016708.01.T01:intron | 5.0% |
| AACACTATACCAGCTAGCCC+GGG | - | Chr3:86886329-86886348 | None:intergenic | 50.0% | |
| AGCCACACCTCCTTGAATTG+TGG | - | Chr3:86885984-86886003 | None:intergenic | 50.0% | |
| AGGGGAACATGGTTCATTGG+TGG | + | Chr3:86884993-86885012 | MsG0380016708.01.T01:CDS | 50.0% | |
| CTTCTGACCGTACTTTCTCC+AGG | - | Chr3:86885337-86885356 | None:intergenic | 50.0% | |
| GGAGACCCATCAGAACAAAC+AGG | - | Chr3:86884850-86884869 | None:intergenic | 50.0% | |
| GTCAGAACCTCCTTTGAGTG+AGG | - | Chr3:86886619-86886638 | None:intergenic | 50.0% | |
| TGCAACCTTGGTCATGCTTC+CGG | - | Chr3:86886441-86886460 | None:intergenic | 50.0% | |
| TGCCACAATTCAAGGAGGTG+TGG | + | Chr3:86885979-86885998 | MsG0380016708.01.T01:intron | 50.0% | |
| ! | CATTCAGGTTCAGGGGAACA+TGG | + | Chr3:86884982-86885001 | MsG0380016708.01.T01:CDS | 50.0% |
| ! | CTGGAGAAAGTACGGTCAGA+AGG | + | Chr3:86885335-86885354 | MsG0380016708.01.T01:CDS | 50.0% |
| !! | ACAAATTAACCCGGGCTAGC+TGG | + | Chr3:86886317-86886336 | MsG0380016708.01.T01:intron | 50.0% |
| ACGACGACAGTACTACTCCG+AGG | + | Chr3:86886710-86886729 | MsG0380016708.01.T01:CDS | 55.0% | |
| GCAACCTTGGTCATGCTTCC+GGG | - | Chr3:86886440-86886459 | None:intergenic | 55.0% | |
| GGAGTTACTTCAGGTGCACC+CGG | + | Chr3:86886419-86886438 | MsG0380016708.01.T01:intron | 55.0% | |
| ! | TGCACCCGGAAGCATGACCA+AGG | + | Chr3:86886433-86886452 | MsG0380016708.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 86884684 | 86887174 | 86884684 | ID=MsG0380016708.01;Name=MsG0380016708.01 |
| Chr3 | mRNA | 86884684 | 86887174 | 86884684 | ID=MsG0380016708.01.T01;Parent=MsG0380016708.01;Name=MsG0380016708.01.T01;_AED=0.29;_eAED=0.29;_QI=52|1|1|1|1|1|3|262|324 |
| Chr3 | exon | 86884684 | 86885115 | 86884684 | ID=MsG0380016708.01.T01:exon:22324;Parent=MsG0380016708.01.T01 |
| Chr3 | exon | 86885281 | 86885382 | 86885281 | ID=MsG0380016708.01.T01:exon:22325;Parent=MsG0380016708.01.T01 |
| Chr3 | exon | 86886420 | 86887174 | 86886420 | ID=MsG0380016708.01.T01:exon:22326;Parent=MsG0380016708.01.T01 |
| Chr3 | five_prime_UTR | 86884684 | 86884735 | 86884684 | ID=MsG0380016708.01.T01:five_prime_utr;Parent=MsG0380016708.01.T01 |
| Chr3 | CDS | 86884736 | 86885115 | 86884736 | ID=MsG0380016708.01.T01:cds;Parent=MsG0380016708.01.T01 |
| Chr3 | CDS | 86885281 | 86885382 | 86885281 | ID=MsG0380016708.01.T01:cds;Parent=MsG0380016708.01.T01 |
| Chr3 | CDS | 86886420 | 86886912 | 86886420 | ID=MsG0380016708.01.T01:cds;Parent=MsG0380016708.01.T01 |
| Chr3 | three_prime_UTR | 86886913 | 86887174 | 86886913 | ID=MsG0380016708.01.T01:three_prime_utr;Parent=MsG0380016708.01.T01 |
| Gene Sequence |
| Protein sequence |
