Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024392.01.T01 | QCD91660.1 | 55.597 | 268 | 44 | 5 | 22 | 252 | 77 | 306 | 4.39E-80 | 274 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024392.01.T01 | Q53WJ1 | 35.714 | 140 | 73 | 7 | 126 | 256 | 258 | 389 | 2.73E-14 | 76.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024392.01.T01 | A0A4D6LT42 | 55.597 | 268 | 44 | 5 | 22 | 252 | 77 | 306 | 2.10e-80 | 274 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048602.01 | MsG0580024392.01 | 0.800580 | 1.348236e-48 | 6.300457e-46 |
| MsG0180000741.01 | MsG0580024392.01 | 0.812801 | 3.531840e-51 | 2.266947e-48 |
| MsG0180003303.01 | MsG0580024392.01 | 0.810497 | 1.119290e-50 | 6.757406e-48 |
| MsG0180004437.01 | MsG0580024392.01 | 0.808124 | 3.612692e-50 | 2.048675e-47 |
| MsG0180006098.01 | MsG0580024392.01 | 0.808199 | 3.483391e-50 | 1.979301e-47 |
| MsG0280006367.01 | MsG0580024392.01 | 0.812724 | 3.670042e-51 | 2.351205e-48 |
| MsG0280010866.01 | MsG0580024392.01 | 0.810671 | 1.026563e-50 | 6.226755e-48 |
| MsG0280010932.01 | MsG0580024392.01 | 0.808230 | 3.429992e-50 | 1.950527e-47 |
| MsG0280011075.01 | MsG0580024392.01 | 0.812664 | 3.784362e-51 | 2.420505e-48 |
| MsG0480020540.01 | MsG0580024392.01 | 0.801075 | 1.068345e-48 | 5.055748e-46 |
| MsG0480021216.01 | MsG0580024392.01 | 0.803853 | 2.858428e-49 | 1.451891e-46 |
| MsG0480022261.01 | MsG0580024392.01 | 0.811126 | 8.183797e-51 | 5.024170e-48 |
| MsG0480022552.01 | MsG0580024392.01 | 0.823933 | 1.060813e-53 | 9.262853e-51 |
| MsG0580024392.01 | MsG0580024770.01 | 0.803864 | 2.844685e-49 | 1.445290e-46 |
| MsG0580024392.01 | MsG0580025128.01 | 0.825386 | 4.821276e-54 | 4.387856e-51 |
| MsG0580024392.01 | MsG0580025184.01 | 0.806604 | 7.588201e-50 | 4.136100e-47 |
| MsG0580024392.01 | MsG0580029208.01 | 0.812144 | 4.913826e-51 | 3.099698e-48 |
| MsG0580024392.01 | MsG0580029639.01 | 0.805921 | 1.056674e-49 | 5.660263e-47 |
| MsG0580024392.01 | MsG0580029650.01 | 0.822844 | 1.906184e-53 | 1.614031e-50 |
| MsG0580024392.01 | MsG0780037286.01 | 0.807314 | 5.368835e-50 | 2.980878e-47 |
| MsG0280007726.01 | MsG0580024392.01 | 0.855531 | 5.925097e-62 | 1.372169e-58 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024392.01.T01 | MTR_5g010300 | 64.848 | 165 | 23 | 2 | 22 | 151 | 77 | 241 | 2.32e-57 | 198 |
| MsG0580024392.01.T01 | MTR_5g010300 | 84.921 | 126 | 15 | 2 | 131 | 252 | 298 | 423 | 1.37e-56 | 196 |
| MsG0580024392.01.T01 | MTR_5g010300 | 64.848 | 165 | 23 | 2 | 22 | 151 | 77 | 241 | 2.32e-57 | 198 |
| MsG0580024392.01.T01 | MTR_5g010300 | 84.921 | 126 | 15 | 2 | 131 | 252 | 298 | 423 | 1.19e-56 | 196 |
| MsG0580024392.01.T01 | MTR_5g010300 | 64.848 | 165 | 23 | 2 | 22 | 151 | 77 | 241 | 2.82e-57 | 197 |
| MsG0580024392.01.T01 | MTR_5g010300 | 84.921 | 126 | 15 | 2 | 131 | 252 | 298 | 423 | 1.37e-56 | 196 |
| MsG0580024392.01.T01 | MTR_5g010300 | 64.848 | 165 | 23 | 2 | 22 | 151 | 77 | 241 | 3.21e-57 | 197 |
| MsG0580024392.01.T01 | MTR_5g010300 | 84.921 | 126 | 15 | 2 | 131 | 252 | 298 | 423 | 1.57e-56 | 196 |
| MsG0580024392.01.T01 | MTR_1g078070 | 31.034 | 145 | 75 | 3 | 130 | 256 | 261 | 398 | 2.09e-14 | 73.6 |
| MsG0580024392.01.T01 | MTR_1g078070 | 31.034 | 145 | 75 | 3 | 130 | 256 | 261 | 398 | 2.19e-14 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024392.01.T01 | AT1G63490 | 65.421 | 107 | 35 | 1 | 131 | 237 | 42 | 146 | 4.39e-42 | 154 |
| MsG0580024392.01.T01 | AT1G63490 | 60.317 | 126 | 44 | 3 | 131 | 252 | 295 | 418 | 6.54e-42 | 153 |
| MsG0580024392.01.T01 | AT1G63490 | 44.444 | 126 | 35 | 2 | 24 | 116 | 82 | 205 | 1.73e-24 | 103 |
| MsG0580024392.01.T01 | AT1G63490 | 60.317 | 126 | 44 | 3 | 131 | 252 | 295 | 418 | 6.54e-42 | 153 |
| MsG0580024392.01.T01 | AT1G63490 | 44.444 | 126 | 35 | 2 | 24 | 116 | 82 | 205 | 1.74e-24 | 103 |
| MsG0580024392.01.T01 | AT1G08620 | 30.612 | 147 | 76 | 5 | 130 | 256 | 262 | 402 | 8.62e-12 | 65.9 |
| MsG0580024392.01.T01 | AT1G08620 | 30.612 | 147 | 76 | 5 | 130 | 256 | 262 | 402 | 8.62e-12 | 65.9 |
| MsG0580024392.01.T01 | AT1G08620 | 30.612 | 147 | 76 | 5 | 130 | 256 | 262 | 402 | 8.62e-12 | 65.9 |
| MsG0580024392.01.T01 | AT1G08620 | 30.612 | 147 | 76 | 5 | 130 | 256 | 276 | 416 | 9.47e-12 | 65.5 |
| MsG0580024392.01.T01 | AT2G34880 | 28.743 | 167 | 102 | 4 | 102 | 256 | 141 | 302 | 2.32e-11 | 64.3 |
| MsG0580024392.01.T01 | AT4G20400 | 33.133 | 166 | 85 | 6 | 111 | 256 | 88 | 247 | 3.48e-11 | 63.9 |
| MsG0580024392.01.T01 | AT4G20400 | 33.133 | 166 | 85 | 6 | 111 | 256 | 145 | 304 | 4.79e-11 | 63.5 |
Find 78 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATAACTTGCCTAAATTAA+AGG | 0.120324 | 5:+4208666 | MsG0580024392.01.T01:CDS |
| GAATTGTTCCACCGAATAAT+TGG | 0.232815 | 5:+4207663 | MsG0580024392.01.T01:CDS |
| AAGCATTGAGCCTTTAATTT+AGG | 0.234705 | 5:-4208676 | None:intergenic |
| TGTTTCTGATTTGTTTCATT+TGG | 0.238307 | 5:-4208583 | None:intergenic |
| TGCAAATAGAGAAGAAGTTC+TGG | 0.300936 | 5:+4208479 | MsG0580024392.01.T01:CDS |
| AAGACGTTTGAGCTGGAGTA+TGG | 0.349029 | 5:+4207780 | MsG0580024392.01.T01:CDS |
| AAAGGAGGTTTCCAATTATT+CGG | 0.359111 | 5:-4207674 | None:intergenic |
| GGTTATGTATGGAAATGATT+TGG | 0.370997 | 5:+4208534 | MsG0580024392.01.T01:CDS |
| GTTATGGTACCTGGCTATAT+TGG | 0.374122 | 5:+4208726 | MsG0580024392.01.T01:CDS |
| TGTAAGAGTAAGAGCGATCC+AGG | 0.376652 | 5:+4208084 | MsG0580024392.01.T01:CDS |
| AGGTTGTTGATGGGAAGAAA+TGG | 0.380956 | 5:+4207917 | MsG0580024392.01.T01:intron |
| TCTATTTGCACCCTTGAAAC+AGG | 0.385704 | 5:-4208466 | None:intergenic |
| TCACAATATCACTGGTGTTA+TGG | 0.387672 | 5:+4208710 | MsG0580024392.01.T01:CDS |
| GGTTGTTGATGGGAAGAAAT+GGG | 0.397367 | 5:+4207918 | MsG0580024392.01.T01:intron |
| TTGGACAGGGACCTGTTTCA+AGG | 0.397459 | 5:+4208455 | MsG0580024392.01.T01:CDS |
| CAAGGTTTGTGAGGTGTAAT+GGG | 0.402131 | 5:+4207950 | MsG0580024392.01.T01:CDS |
| GATTTGGATAAATCTATCTA+TGG | 0.408708 | 5:+4208550 | MsG0580024392.01.T01:CDS |
| GGCAAGTTATTCAAATTCCA+TGG | 0.411504 | 5:-4208655 | None:intergenic |
| GAAGAAGTTCTGGGAGATTG+TGG | 0.419470 | 5:+4208489 | MsG0580024392.01.T01:CDS |
| GGTTATGATAAGGTTGTTGA+TGG | 0.423265 | 5:+4207907 | MsG0580024392.01.T01:intron |
| CGATCCAGGGGTGGAGAGTT+CGG | 0.426328 | 5:+4208098 | MsG0580024392.01.T01:CDS |
| AGAGCATCTTTATGATTATG+AGG | 0.428209 | 5:+4208017 | MsG0580024392.01.T01:CDS |
| GCAAGGTTTGTGAGGTGTAA+TGG | 0.433345 | 5:+4207949 | MsG0580024392.01.T01:CDS |
| GAGGTGTAATGGGAAGATTT+CGG | 0.453749 | 5:+4207960 | MsG0580024392.01.T01:CDS |
| ATTGGAAACCTCCTTTGCAT+TGG | 0.454060 | 5:+4207681 | MsG0580024392.01.T01:CDS |
| GGGGTCGGTTGGTGAGGTTG+AGG | 0.457412 | 5:+4208513 | MsG0580024392.01.T01:CDS |
| AGGTCGAGGAGGAGATGGTT+TGG | 0.465503 | 5:+4208436 | MsG0580024392.01.T01:CDS |
| GATAAATCTATCTATGGTAG+TGG | 0.478015 | 5:+4208556 | MsG0580024392.01.T01:CDS |
| TGTGGAGGGGTCGGTTGGTG+AGG | 0.480136 | 5:+4208507 | MsG0580024392.01.T01:CDS |
| TCCAGCGAATATTGCTTCCC+CGG | 0.480546 | 5:-4208391 | None:intergenic |
| CTGGGAGATTGTGGAGGGGT+CGG | 0.481973 | 5:+4208498 | MsG0580024392.01.T01:CDS |
| ATCCTCAAAATGCCAGCAAA+AGG | 0.493068 | 5:-4208763 | None:intergenic |
| GGTGAGGTTGAGGTTATGTA+TGG | 0.493896 | 5:+4208523 | MsG0580024392.01.T01:CDS |
| ACAGGCGATTCATAAGCTTC+AGG | 0.496534 | 5:+4207734 | MsG0580024392.01.T01:CDS |
| AATCTATTGATGATAAGTTA+TGG | 0.496758 | 5:+4208614 | MsG0580024392.01.T01:CDS |
| TGGACAGGGACCTGTTTCAA+GGG | 0.502224 | 5:+4208456 | MsG0580024392.01.T01:CDS |
| GGGAGGTTGCAAGGTTTGTG+AGG | 0.502755 | 5:+4207941 | MsG0580024392.01.T01:CDS |
| GGTGGAGAGTTCGGTCAGTT+CGG | 0.506687 | 5:+4208107 | MsG0580024392.01.T01:CDS |
| TGGAGTATGGTAGGTTTGAG+AGG | 0.508538 | 5:+4207793 | MsG0580024392.01.T01:CDS |
| CGTTTGAGCTGGAGTATGGT+AGG | 0.512739 | 5:+4207784 | MsG0580024392.01.T01:CDS |
| AGTAAAGGTACGAGCACGAG+TGG | 0.514944 | 5:+4208057 | MsG0580024392.01.T01:CDS |
| CAGATAGGTCGAGGAGGAGA+TGG | 0.517677 | 5:+4208431 | MsG0580024392.01.T01:CDS |
| CTTTCAGACGCATTGCAGAT+AGG | 0.518605 | 5:+4208416 | MsG0580024392.01.T01:CDS |
| ATCACTGGTGTTATGGTACC+TGG | 0.527806 | 5:+4208717 | MsG0580024392.01.T01:CDS |
| GAGGAGGAGATGGTTTGGAC+AGG | 0.528649 | 5:+4208441 | MsG0580024392.01.T01:CDS |
| AACTTATCATCAATAGATTG+TGG | 0.529072 | 5:-4208610 | None:intergenic |
| GGAGTATGGTAGGTTTGAGA+GGG | 0.530254 | 5:+4207794 | MsG0580024392.01.T01:CDS |
| TTGTTGATGGGAAGAAATGG+GGG | 0.530821 | 5:+4207920 | MsG0580024392.01.T01:CDS |
| AACAATTCTACAAATTCCAT+AGG | 0.532031 | 5:-4207648 | None:intergenic |
| TGATTCGAAGACGTTTGAGC+TGG | 0.533945 | 5:+4207773 | MsG0580024392.01.T01:CDS |
| GCAAGTTATTCAAATTCCAT+GGG | 0.538554 | 5:-4208654 | None:intergenic |
| GAGTTCGGATAGGGAGAGCT+TGG | 0.544912 | 5:+4208361 | MsG0580024392.01.T01:intron |
| GCCGGGGAAGCAATATTCGC+TGG | 0.545338 | 5:+4208390 | MsG0580024392.01.T01:CDS |
| CTGACCGAACTCTCCACCCC+TGG | 0.545867 | 5:-4208102 | None:intergenic |
| GAGATTGTGGAGGGGTCGGT+TGG | 0.545938 | 5:+4208502 | MsG0580024392.01.T01:CDS |
| GCAAATAGAGAAGAAGTTCT+GGG | 0.551112 | 5:+4208480 | MsG0580024392.01.T01:CDS |
| AATAGCATTCCAATATAGCC+AGG | 0.560521 | 5:-4208735 | None:intergenic |
| TCACTTTCCGACGAAGACAC+AGG | 0.561145 | 5:+4207716 | MsG0580024392.01.T01:CDS |
| GTTGTTGATGGGAAGAAATG+GGG | 0.565480 | 5:+4207919 | MsG0580024392.01.T01:CDS |
| GAAGTTCTGGGAGATTGTGG+AGG | 0.566416 | 5:+4208492 | MsG0580024392.01.T01:CDS |
| GCTGTTCATCACAATATCAC+TGG | 0.571306 | 5:+4208702 | MsG0580024392.01.T01:CDS |
| GTCTTCGAATCACACGCAGC+AGG | 0.578760 | 5:-4207762 | None:intergenic |
| GACGCATTGCAGATAGGTCG+AGG | 0.582270 | 5:+4208422 | MsG0580024392.01.T01:CDS |
| ATCTAGATCCAATGCAAAGG+AGG | 0.584549 | 5:-4207689 | None:intergenic |
| TGTTGATGGGAAGAAATGGG+GGG | 0.588740 | 5:+4207921 | MsG0580024392.01.T01:CDS |
| GGAGGTTTCCAATTATTCGG+TGG | 0.589441 | 5:-4207671 | None:intergenic |
| GTAAGAGTAAGAGCGATCCA+GGG | 0.591679 | 5:+4208085 | MsG0580024392.01.T01:CDS |
| GAGTAAGAGCGATCCAGGGG+TGG | 0.597004 | 5:+4208089 | MsG0580024392.01.T01:CDS |
| GTTATGATAAGGTTGTTGAT+GGG | 0.606122 | 5:+4207908 | MsG0580024392.01.T01:intron |
| AAGTTCTGGGAGATTGTGGA+GGG | 0.610461 | 5:+4208493 | MsG0580024392.01.T01:CDS |
| AGAATCTAGATCCAATGCAA+AGG | 0.625050 | 5:-4207692 | None:intergenic |
| AGGAGGAGATGGTTTGGACA+GGG | 0.639029 | 5:+4208442 | MsG0580024392.01.T01:CDS |
| TGAATCGCCTGTGTCTTCGT+CGG | 0.640852 | 5:-4207723 | None:intergenic |
| AAGAATACTCAACAAACCCA+TGG | 0.667745 | 5:+4208638 | MsG0580024392.01.T01:CDS |
| TAAGAGTAAGAGCGATCCAG+GGG | 0.676576 | 5:+4208086 | MsG0580024392.01.T01:CDS |
| GTAAAGGTACGAGCACGAGT+GGG | 0.681686 | 5:+4208058 | MsG0580024392.01.T01:CDS |
| GCATTGCAGATAGGTCGAGG+AGG | 0.691576 | 5:+4208425 | MsG0580024392.01.T01:CDS |
| AGTTCTGGGAGATTGTGGAG+GGG | 0.702191 | 5:+4208494 | MsG0580024392.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATCTATTGATGATAAGTTA+TGG | + | Chr5:4208614-4208633 | MsG0580024392.01.T01:CDS | 20.0% |
| !!! | TGTTGATGATATGAAAATTA+AGG | + | Chr5:4208151-4208170 | MsG0580024392.01.T01:intron | 20.0% |
| !!! | TTGTTTTAATTGTTTGAGTT+CGG | + | Chr5:4208346-4208365 | MsG0580024392.01.T01:intron | 20.0% |
| !!! | TTTTGCAATAAGTTTAGTAA+AGG | + | Chr5:4208042-4208061 | MsG0580024392.01.T01:CDS | 20.0% |
| ! | AACTTATCATCAATAGATTG+TGG | - | Chr5:4208613-4208632 | None:intergenic | 25.0% |
| ! | AATTAAGGATTTGAAAGTGA+AGG | + | Chr5:4208166-4208185 | MsG0580024392.01.T01:intron | 25.0% |
| ! | GATTTGGATAAATCTATCTA+TGG | + | Chr5:4208550-4208569 | MsG0580024392.01.T01:CDS | 25.0% |
| !! | GAATAACTTGCCTAAATTAA+AGG | + | Chr5:4208666-4208685 | MsG0580024392.01.T01:CDS | 25.0% |
| !!! | TGTTTCTGATTTGTTTCATT+TGG | - | Chr5:4208586-4208605 | None:intergenic | 25.0% |
| AAACAATACCAATTTCCCAA+CGG | - | Chr5:4208332-4208351 | None:intergenic | 30.0% | |
| AAAGGAGGTTTCCAATTATT+CGG | - | Chr5:4207677-4207696 | None:intergenic | 30.0% | |
| ATTTGTGAGCAATGTAAAAG+TGG | + | Chr5:4208221-4208240 | MsG0580024392.01.T01:intron | 30.0% | |
| GATAAATCTATCTATGGTAG+TGG | + | Chr5:4208556-4208575 | MsG0580024392.01.T01:CDS | 30.0% | |
| GCAAGTTATTCAAATTCCAT+GGG | - | Chr5:4208657-4208676 | None:intergenic | 30.0% | |
| GGTTATGTATGGAAATGATT+TGG | + | Chr5:4208534-4208553 | MsG0580024392.01.T01:CDS | 30.0% | |
| GTTATGATAAGGTTGTTGAT+GGG | + | Chr5:4207908-4207927 | MsG0580024392.01.T01:intron | 30.0% | |
| TTTGTGAGCAATGTAAAAGT+GGG | + | Chr5:4208222-4208241 | MsG0580024392.01.T01:intron | 30.0% | |
| ! | AGAGCATCTTTATGATTATG+AGG | + | Chr5:4208017-4208036 | MsG0580024392.01.T01:CDS | 30.0% |
| ! | GATTTGTGTAAGGTGTTTAA+TGG | + | Chr5:4207869-4207888 | MsG0580024392.01.T01:intron | 30.0% |
| ! | TAATTGTTTGAGTTCGGATA+GGG | + | Chr5:4208352-4208371 | MsG0580024392.01.T01:intron | 30.0% |
| ! | TTAATTGTTTGAGTTCGGAT+AGG | + | Chr5:4208351-4208370 | MsG0580024392.01.T01:intron | 30.0% |
| !! | AAGCATTGAGCCTTTAATTT+AGG | - | Chr5:4208679-4208698 | None:intergenic | 30.0% |
| !!! | AAGAAGAGAGTTGTTTTTGA+AGG | + | Chr5:4207836-4207855 | MsG0580024392.01.T01:intron | 30.0% |
| !!! | AGAAGAGAGTTGTTTTTGAA+GGG | + | Chr5:4207837-4207856 | MsG0580024392.01.T01:intron | 30.0% |
| AAGAATACTCAACAAACCCA+TGG | + | Chr5:4208638-4208657 | MsG0580024392.01.T01:CDS | 35.0% | |
| AATAGCATTCCAATATAGCC+AGG | - | Chr5:4208738-4208757 | None:intergenic | 35.0% | |
| AGAATCTAGATCCAATGCAA+AGG | - | Chr5:4207695-4207714 | None:intergenic | 35.0% | |
| AGGATTTGAAAGTGAAGGAT+CGG | + | Chr5:4208171-4208190 | MsG0580024392.01.T01:intron | 35.0% | |
| ATTGCTCACAAATCTGATCA+CGG | - | Chr5:4208214-4208233 | None:intergenic | 35.0% | |
| GAATTGTTCCACCGAATAAT+TGG | + | Chr5:4207663-4207682 | MsG0580024392.01.T01:CDS | 35.0% | |
| GCAAATAGAGAAGAAGTTCT+GGG | + | Chr5:4208480-4208499 | MsG0580024392.01.T01:CDS | 35.0% | |
| GGAGGATTTAGATTTGTGTA+AGG | + | Chr5:4207859-4207878 | MsG0580024392.01.T01:intron | 35.0% | |
| GGCAAGTTATTCAAATTCCA+TGG | - | Chr5:4208658-4208677 | None:intergenic | 35.0% | |
| GGTTATGATAAGGTTGTTGA+TGG | + | Chr5:4207907-4207926 | MsG0580024392.01.T01:intron | 35.0% | |
| TGCAAATAGAGAAGAAGTTC+TGG | + | Chr5:4208479-4208498 | MsG0580024392.01.T01:CDS | 35.0% | |
| TGTGTGATAGGTGTGATAAA+GGG | + | Chr5:4208267-4208286 | MsG0580024392.01.T01:intron | 35.0% | |
| TTGTGTGATAGGTGTGATAA+AGG | + | Chr5:4208266-4208285 | MsG0580024392.01.T01:intron | 35.0% | |
| ! | AGGTGTTTAATGGTGTTAAG+AGG | + | Chr5:4207879-4207898 | MsG0580024392.01.T01:intron | 35.0% |
| ! | GTTTAATGGTGTTAAGAGGT+TGG | + | Chr5:4207883-4207902 | MsG0580024392.01.T01:intron | 35.0% |
| ! | TCACAATATCACTGGTGTTA+TGG | + | Chr5:4208710-4208729 | MsG0580024392.01.T01:CDS | 35.0% |
| !! | AATGTAAAAGTGGGTTGCAT+GGG | + | Chr5:4208231-4208250 | MsG0580024392.01.T01:intron | 35.0% |
| !!! | GAAGAGAGTTGTTTTTGAAG+GGG | + | Chr5:4207838-4207857 | MsG0580024392.01.T01:intron | 35.0% |
| AGCAAATTCCGTTGGGAAAT+TGG | + | Chr5:4208321-4208340 | MsG0580024392.01.T01:intron | 40.0% | |
| AGGTGATGCTATTGTGTGAT+AGG | + | Chr5:4208255-4208274 | MsG0580024392.01.T01:intron | 40.0% | |
| AGGTTTGAGAGGGATTATGT+GGG | + | Chr5:4207804-4207823 | MsG0580024392.01.T01:intron | 40.0% | |
| AGTGAAGGATCGGAAAGTAA+AGG | + | Chr5:4208181-4208200 | MsG0580024392.01.T01:intron | 40.0% | |
| ATCCTCAAAATGCCAGCAAA+AGG | - | Chr5:4208766-4208785 | None:intergenic | 40.0% | |
| ATCTAGATCCAATGCAAAGG+AGG | - | Chr5:4207692-4207711 | None:intergenic | 40.0% | |
| ATTGGAAACCTCCTTTGCAT+TGG | + | Chr5:4207681-4207700 | MsG0580024392.01.T01:CDS | 40.0% | |
| CAAGGTTTGTGAGGTGTAAT+GGG | + | Chr5:4207950-4207969 | MsG0580024392.01.T01:CDS | 40.0% | |
| GCTGTTCATCACAATATCAC+TGG | + | Chr5:4208702-4208721 | MsG0580024392.01.T01:CDS | 40.0% | |
| GTTATGGTACCTGGCTATAT+TGG | + | Chr5:4208726-4208745 | MsG0580024392.01.T01:CDS | 40.0% | |
| TAGGTTTGAGAGGGATTATG+TGG | + | Chr5:4207803-4207822 | MsG0580024392.01.T01:intron | 40.0% | |
| TCTATTTGCACCCTTGAAAC+AGG | - | Chr5:4208469-4208488 | None:intergenic | 40.0% | |
| ! | AGGTTGTTGATGGGAAGAAA+TGG | + | Chr5:4207917-4207936 | MsG0580024392.01.T01:intron | 40.0% |
| ! | GAGGTGTAATGGGAAGATTT+CGG | + | Chr5:4207960-4207979 | MsG0580024392.01.T01:CDS | 40.0% |
| ! | GGTTGTTGATGGGAAGAAAT+GGG | + | Chr5:4207918-4207937 | MsG0580024392.01.T01:intron | 40.0% |
| ! | GTTGTTGATGGGAAGAAATG+GGG | + | Chr5:4207919-4207938 | MsG0580024392.01.T01:CDS | 40.0% |
| ! | TAATGGTGTTAAGAGGTTGG+TGG | + | Chr5:4207886-4207905 | MsG0580024392.01.T01:intron | 40.0% |
| ! | TTGTTGATGGGAAGAAATGG+GGG | + | Chr5:4207920-4207939 | MsG0580024392.01.T01:CDS | 40.0% |
| !! | AGAGGTTGGTGGTTATGATA+AGG | + | Chr5:4207897-4207916 | MsG0580024392.01.T01:intron | 40.0% |
| !! | ATGTAAAAGTGGGTTGCATG+GGG | + | Chr5:4208232-4208251 | MsG0580024392.01.T01:intron | 40.0% |
| !! | CAATGTAAAAGTGGGTTGCA+TGG | + | Chr5:4208230-4208249 | MsG0580024392.01.T01:intron | 40.0% |
| AAGACGTTTGAGCTGGAGTA+TGG | + | Chr5:4207780-4207799 | MsG0580024392.01.T01:CDS | 45.0% | |
| ACAGGCGATTCATAAGCTTC+AGG | + | Chr5:4207734-4207753 | MsG0580024392.01.T01:CDS | 45.0% | |
| AGAGGGATTATGTGGGAAGA+AGG | + | Chr5:4207811-4207830 | MsG0580024392.01.T01:intron | 45.0% | |
| CAACAACCCATGATGCTTCT+TGG | - | Chr5:4208136-4208155 | None:intergenic | 45.0% | |
| CCGTTGAAGCAAATTCCGTT+GGG | + | Chr5:4208314-4208333 | MsG0580024392.01.T01:intron | 45.0% | |
| CTTTCAGACGCATTGCAGAT+AGG | + | Chr5:4208416-4208435 | MsG0580024392.01.T01:CDS | 45.0% | |
| GCAAGGTTTGTGAGGTGTAA+TGG | + | Chr5:4207949-4207968 | MsG0580024392.01.T01:CDS | 45.0% | |
| GGAGGTTTCCAATTATTCGG+TGG | - | Chr5:4207674-4207693 | None:intergenic | 45.0% | |
| GGAGTATGGTAGGTTTGAGA+GGG | + | Chr5:4207794-4207813 | MsG0580024392.01.T01:CDS | 45.0% | |
| GGTGAGGTTGAGGTTATGTA+TGG | + | Chr5:4208523-4208542 | MsG0580024392.01.T01:CDS | 45.0% | |
| GTAAGAGTAAGAGCGATCCA+GGG | + | Chr5:4208085-4208104 | MsG0580024392.01.T01:CDS | 45.0% | |
| GTGATAGGTGTGATAAAGGG+TGG | + | Chr5:4208270-4208289 | MsG0580024392.01.T01:intron | 45.0% | |
| TAAGAGTAAGAGCGATCCAG+GGG | + | Chr5:4208086-4208105 | MsG0580024392.01.T01:CDS | 45.0% | |
| TGATTCGAAGACGTTTGAGC+TGG | + | Chr5:4207773-4207792 | MsG0580024392.01.T01:CDS | 45.0% | |
| TGGAGTATGGTAGGTTTGAG+AGG | + | Chr5:4207793-4207812 | MsG0580024392.01.T01:CDS | 45.0% | |
| TGTAAGAGTAAGAGCGATCC+AGG | + | Chr5:4208084-4208103 | MsG0580024392.01.T01:CDS | 45.0% | |
| ! | AACGGAATTTGCTTCAACGG+CGG | - | Chr5:4208314-4208333 | None:intergenic | 45.0% |
| ! | CCCAACGGAATTTGCTTCAA+CGG | - | Chr5:4208317-4208336 | None:intergenic | 45.0% |
| ! | GTCCTTTTGCTGGCATTTTG+AGG | + | Chr5:4208761-4208780 | MsG0580024392.01.T01:CDS | 45.0% |
| ! | TGCTATTCTCGTCCTTTTGC+TGG | + | Chr5:4208751-4208770 | MsG0580024392.01.T01:CDS | 45.0% |
| ! | TGTTGATGGGAAGAAATGGG+GGG | + | Chr5:4207921-4207940 | MsG0580024392.01.T01:CDS | 45.0% |
| !! | AAGTTCTGGGAGATTGTGGA+GGG | + | Chr5:4208493-4208512 | MsG0580024392.01.T01:CDS | 45.0% |
| !! | ATCACTGGTGTTATGGTACC+TGG | + | Chr5:4208717-4208736 | MsG0580024392.01.T01:CDS | 45.0% |
| !! | CGGTATCCAAGAAGCATCAT+GGG | + | Chr5:4208127-4208146 | MsG0580024392.01.T01:intron | 45.0% |
| !! | GAAGAAGTTCTGGGAGATTG+TGG | + | Chr5:4208489-4208508 | MsG0580024392.01.T01:CDS | 45.0% |
| !! | TCGGTATCCAAGAAGCATCA+TGG | + | Chr5:4208126-4208145 | MsG0580024392.01.T01:intron | 45.0% |
| !!! | GAGAGTTGTTTTTGAAGGGG+AGG | + | Chr5:4207841-4207860 | MsG0580024392.01.T01:intron | 45.0% |
| CGTTTGAGCTGGAGTATGGT+AGG | + | Chr5:4207784-4207803 | MsG0580024392.01.T01:CDS | 50.0% | |
| GCCGTTGAAGCAAATTCCGT+TGG | + | Chr5:4208313-4208332 | MsG0580024392.01.T01:intron | 50.0% | |
| TCACTTTCCGACGAAGACAC+AGG | + | Chr5:4207716-4207735 | MsG0580024392.01.T01:CDS | 50.0% | |
| TCCAGCGAATATTGCTTCCC+CGG | - | Chr5:4208394-4208413 | None:intergenic | 50.0% | |
| TGAATCGCCTGTGTCTTCGT+CGG | - | Chr5:4207726-4207745 | None:intergenic | 50.0% | |
| TGGACAGGGACCTGTTTCAA+GGG | + | Chr5:4208456-4208475 | MsG0580024392.01.T01:CDS | 50.0% | |
| TTGGACAGGGACCTGTTTCA+AGG | + | Chr5:4208455-4208474 | MsG0580024392.01.T01:CDS | 50.0% | |
| ! | AGGAGGAGATGGTTTGGACA+GGG | + | Chr5:4208442-4208461 | MsG0580024392.01.T01:CDS | 50.0% |
| ! | AGTAAAGGTACGAGCACGAG+TGG | + | Chr5:4208057-4208076 | MsG0580024392.01.T01:CDS | 50.0% |
| ! | GTAAAGGTACGAGCACGAGT+GGG | + | Chr5:4208058-4208077 | MsG0580024392.01.T01:CDS | 50.0% |
| !! | AGTTCTGGGAGATTGTGGAG+GGG | + | Chr5:4208494-4208513 | MsG0580024392.01.T01:CDS | 50.0% |
| !! | GAAGTTCTGGGAGATTGTGG+AGG | + | Chr5:4208492-4208511 | MsG0580024392.01.T01:CDS | 50.0% |
| !! | TAAAAGTGGGTTGCATGGGG+AGG | + | Chr5:4208235-4208254 | MsG0580024392.01.T01:intron | 50.0% |
| AGAAATGGGGGGAGGTTGCA+AGG | + | Chr5:4207932-4207951 | MsG0580024392.01.T01:CDS | 55.0% | |
| AGGTCGAGGAGGAGATGGTT+TGG | + | Chr5:4208436-4208455 | MsG0580024392.01.T01:CDS | 55.0% | |
| CAGATAGGTCGAGGAGGAGA+TGG | + | Chr5:4208431-4208450 | MsG0580024392.01.T01:CDS | 55.0% | |
| GACGCATTGCAGATAGGTCG+AGG | + | Chr5:4208422-4208441 | MsG0580024392.01.T01:CDS | 55.0% | |
| GAGTTCGGATAGGGAGAGCT+TGG | + | Chr5:4208361-4208380 | MsG0580024392.01.T01:intron | 55.0% | |
| GCATTGCAGATAGGTCGAGG+AGG | + | Chr5:4208425-4208444 | MsG0580024392.01.T01:CDS | 55.0% | |
| GGGAGGTTGCAAGGTTTGTG+AGG | + | Chr5:4207941-4207960 | MsG0580024392.01.T01:CDS | 55.0% | |
| GGTGGAGAGTTCGGTCAGTT+CGG | + | Chr5:4208107-4208126 | MsG0580024392.01.T01:CDS | 55.0% | |
| GTCTTCGAATCACACGCAGC+AGG | - | Chr5:4207765-4207784 | None:intergenic | 55.0% | |
| TGATGGGAAGAAATGGGGGG+AGG | + | Chr5:4207924-4207943 | MsG0580024392.01.T01:CDS | 55.0% | |
| ! | GAGGAGGAGATGGTTTGGAC+AGG | + | Chr5:4208441-4208460 | MsG0580024392.01.T01:CDS | 55.0% |
| !!! | GAGAGCTTGGTTTTGTGCCG+GGG | + | Chr5:4208374-4208393 | MsG0580024392.01.T01:CDS | 55.0% |
| !!! | GGAGAGCTTGGTTTTGTGCC+GGG | + | Chr5:4208373-4208392 | MsG0580024392.01.T01:CDS | 55.0% |
| !!! | GGGAGAGCTTGGTTTTGTGC+CGG | + | Chr5:4208372-4208391 | MsG0580024392.01.T01:intron | 55.0% |
| CGATCCAGGGGTGGAGAGTT+CGG | + | Chr5:4208098-4208117 | MsG0580024392.01.T01:CDS | 60.0% | |
| CTGGGAGATTGTGGAGGGGT+CGG | + | Chr5:4208498-4208517 | MsG0580024392.01.T01:CDS | 60.0% | |
| GAGATTGTGGAGGGGTCGGT+TGG | + | Chr5:4208502-4208521 | MsG0580024392.01.T01:CDS | 60.0% | |
| GAGTAAGAGCGATCCAGGGG+TGG | + | Chr5:4208089-4208108 | MsG0580024392.01.T01:CDS | 60.0% | |
| GCCGGGGAAGCAATATTCGC+TGG | + | Chr5:4208390-4208409 | MsG0580024392.01.T01:CDS | 60.0% | |
| CTGACCGAACTCTCCACCCC+TGG | - | Chr5:4208105-4208124 | None:intergenic | 65.0% | |
| ! | TGTGGAGGGGTCGGTTGGTG+AGG | + | Chr5:4208507-4208526 | MsG0580024392.01.T01:CDS | 65.0% |
| !! | GGGGTCGGTTGGTGAGGTTG+AGG | + | Chr5:4208513-4208532 | MsG0580024392.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 4207651 | 4208804 | 4207651 | ID=MsG0580024392.01;Name=MsG0580024392.01 |
| Chr5 | mRNA | 4207651 | 4208804 | 4207651 | ID=MsG0580024392.01.T01;Parent=MsG0580024392.01;Name=MsG0580024392.01.T01;_AED=0.37;_eAED=0.37;_QI=0|0.94|0.91|1|0.5|0.6|35|0|270 |
| Chr5 | exon | 4207651 | 4207821 | 4207651 | ID=MsG0580024392.01.T01:exon:2225;Parent=MsG0580024392.01.T01 |
| Chr5 | exon | 4207919 | 4208128 | 4207919 | ID=MsG0580024392.01.T01:exon:2226;Parent=MsG0580024392.01.T01 |
| Chr5 | exon | 4208373 | 4208804 | 4208373 | ID=MsG0580024392.01.T01:exon:2227;Parent=MsG0580024392.01.T01 |
| Chr5 | CDS | 4207651 | 4207821 | 4207651 | ID=MsG0580024392.01.T01:cds;Parent=MsG0580024392.01.T01 |
| Chr5 | CDS | 4207919 | 4208128 | 4207919 | ID=MsG0580024392.01.T01:cds;Parent=MsG0580024392.01.T01 |
| Chr5 | CDS | 4208373 | 4208804 | 4208373 | ID=MsG0580024392.01.T01:cds;Parent=MsG0580024392.01.T01 |
| Gene Sequence |
| Protein sequence |
