AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004437.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004437.01.T01 MTR_1g079770 62.468 389 61 8 21 344 52 420 1.29e-141 415
MsG0180004437.01.T01 MTR_1g079770 62.468 389 61 8 21 344 52 420 1.64e-140 416
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004437.01.T01 AT1G71270 53.906 384 101 9 21 344 61 428 3.21e-114 348
MsG0180004437.01.T01 AT1G71300 50.000 390 113 10 21 344 49 422 3.55e-102 317
MsG0180004437.01.T01 AT1G71300 50.000 390 113 10 21 344 69 442 7.22e-102 317

Find 63 sgRNAs with CRISPR-Local

Find 395 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTCTGCTAAGTGGATTTC+AGG 0.248051 1:+77914204 MsG0180004437.01.T01:CDS
TATTATCACAATCATGAATT+TGG 0.261483 1:-77914165 None:intergenic
GCAAGAGAAGTCTATGGATA+TGG 0.265601 1:+77914706 MsG0180004437.01.T01:CDS
TAGGTCATTGATATGCCTTT+TGG 0.275292 1:+77919284 MsG0180004437.01.T01:CDS
TTAGTATAATCTCTAAGTTT+TGG 0.301178 1:-77913865 None:intergenic
AGTGGAGTTGGATTCAATTC+AGG 0.310032 1:+77913912 MsG0180004437.01.T01:CDS
TTTAGACAAGGTCAGCTTCC+TGG 0.312875 1:+77919871 MsG0180004437.01.T01:CDS
TTGGGTTATACAGGTCCTTT+TGG 0.316391 1:+77919303 MsG0180004437.01.T01:CDS
CATCAATAACAGTATTAGTA+TGG 0.350685 1:+77916071 MsG0180004437.01.T01:CDS
TGGATGGATAACAGATGATA+TGG 0.366974 1:-77916167 None:intergenic
TGATAATATCTTGTCACATA+TGG 0.393000 1:+77914180 MsG0180004437.01.T01:CDS
TCGGAGGCGGATTCCATGCT+TGG 0.397429 1:+77919841 MsG0180004437.01.T01:CDS
TTTATTTACCAGGCTGAGAT+TGG 0.409163 1:+77914656 MsG0180004437.01.T01:intron
AATTCTGCAAGAGAAGTCTA+TGG 0.414810 1:+77914700 MsG0180004437.01.T01:CDS
CCTATAGCATCATAGCAGTT+TGG 0.418595 1:-77919357 None:intergenic
TTCCACAAACTTAGCCAGCT+TGG 0.428764 1:-77915063 None:intergenic
GAAACTGAAGTTTGTAGAAG+TGG 0.448325 1:+77915960 MsG0180004437.01.T01:CDS
TTAGACAAGGTCAGCTTCCT+GGG 0.456091 1:+77919872 MsG0180004437.01.T01:CDS
CCAAACTGCTATGATGCTAT+AGG 0.459765 1:+77919357 MsG0180004437.01.T01:CDS
TGATTTGCGCAAAGTGGAGT+TGG 0.463004 1:+77913900 MsG0180004437.01.T01:CDS
ATATGGGTTCAGGTTTGTAT+AGG 0.464967 1:+77919265 MsG0180004437.01.T01:intron
CTAAGAACCTGCACATATAG+AGG 0.468008 1:-77917563 None:intergenic
TGCTCATCCATGACACCAAA+AGG 0.473405 1:-77919318 None:intergenic
TGTGCGCGATTCTTAAGAAA+AGG 0.475661 1:+77913110 MsG0180004437.01.T01:CDS
ATCCAAGCTGGCTAAGTTTG+TGG 0.479760 1:+77915061 MsG0180004437.01.T01:CDS
CATTATTATCCCTCCGAGAA+TGG 0.482423 1:+77915088 MsG0180004437.01.T01:CDS
TTATGCTCCTCTATATGTGC+AGG 0.486456 1:+77917556 MsG0180004437.01.T01:CDS
AACCTGAGCTTGAAAAGCTC+AGG 0.490108 1:+77916022 MsG0180004437.01.T01:CDS
TGCACATATAGAGGAGCATA+AGG 0.490711 1:-77917554 None:intergenic
ATGGTGGACATCCTTGTTGA+TGG 0.498798 1:+77915107 MsG0180004437.01.T01:CDS
ACAAGGATGTCCACCATTCT+CGG 0.499451 1:-77915101 None:intergenic
AGCTCATTATGTCTCGGAGG+CGG 0.500639 1:+77919828 MsG0180004437.01.T01:intron
CAAGAGAAGTCTATGGATAT+GGG 0.510930 1:+77914707 MsG0180004437.01.T01:CDS
AGTCTATGGATATGGGTTTG+AGG 0.513380 1:+77914714 MsG0180004437.01.T01:CDS
AAAACTTAGAGATTATACTA+AGG 0.519810 1:+77913867 MsG0180004437.01.T01:CDS
GTCAAATACCTGCAGATGGA+TGG 0.520358 1:-77916183 None:intergenic
TCTGTTATCCATCCATCTGC+AGG 0.525690 1:+77916175 MsG0180004437.01.T01:CDS
GTTGCAAATATACTATCTAA+AGG 0.530234 1:+77913841 MsG0180004437.01.T01:CDS
TATTTCAGCTCATTATGTCT+CGG 0.532355 1:+77919822 MsG0180004437.01.T01:intron
CAGGCAGAAAGCAGTCTCAA+AGG 0.545719 1:+77916041 MsG0180004437.01.T01:CDS
AAGGACCTGTATAACCCAAA+AGG 0.553031 1:-77919299 None:intergenic
AAACTTAGAGATTATACTAA+GGG 0.553199 1:+77913868 MsG0180004437.01.T01:CDS
TGAGAATGATTTGCGCAAAG+TGG 0.554547 1:+77913894 MsG0180004437.01.T01:CDS
CTTGGATTCTTATTTAGACA+AGG 0.558627 1:+77919859 MsG0180004437.01.T01:CDS
GTATGTTGTTAACTTTCTCA+AGG 0.565046 1:+77916829 MsG0180004437.01.T01:CDS
TTAAGCAGAACGCATTGCCC+AGG 0.567131 1:-77919889 None:intergenic
GTTAACTTTCTCAAGGAACA+TGG 0.568981 1:+77916836 MsG0180004437.01.T01:CDS
TCTAAATAAGAATCCAAGCA+TGG 0.575363 1:-77919854 None:intergenic
TGAAGTCAAATACCTGCAGA+TGG 0.576332 1:-77916187 None:intergenic
ATTAGTTGTGTTGATTTCAA+CGG 0.584747 1:+77913133 MsG0180004437.01.T01:CDS
CATATGGAAACTCTGCTAAG+TGG 0.592668 1:+77914196 MsG0180004437.01.T01:CDS
ACAATAAAAGTATATAGCAA+AGG 0.598614 1:-77918056 None:intergenic
ATAGGTGGCTGAATCCAAGC+TGG 0.607893 1:+77915049 MsG0180004437.01.T01:intron
TATTATCCCTCCGAGAATGG+TGG 0.631865 1:+77915091 MsG0180004437.01.T01:CDS
GTTTGTAGAAGTGGACACAA+TGG 0.634918 1:+77915969 MsG0180004437.01.T01:CDS
GGATGTCCACCATTCTCGGA+GGG 0.636579 1:-77915097 None:intergenic
TTTGAGGCTTAAGAATCGCA+AGG 0.639267 1:+77914730 MsG0180004437.01.T01:CDS
TTCAGCTCATTATGTCTCGG+AGG 0.639985 1:+77919825 MsG0180004437.01.T01:intron
GGACATCCTTGTTGATGGAG+AGG 0.650934 1:+77915112 MsG0180004437.01.T01:CDS
TTATATTGATACAATGAACA+AGG 0.679968 1:+77916889 MsG0180004437.01.T01:CDS
ATAATACCTCTCCATCAACA+AGG 0.682669 1:-77915118 None:intergenic
GCACAACTCGTATGAGACAT+CGG 0.684421 1:-77913092 None:intergenic
AGGATGTCCACCATTCTCGG+AGG 0.702552 1:-77915098 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAATTAATAAAACATTAT+TGG - Chr1:77915173-77915192 None:intergenic 10.0%
!! TTTGATATTATTCAATTATT+TGG - Chr1:77919642-77919661 None:intergenic 10.0%
!!! AAATTTTAATTTTATTTACC+AGG + Chr1:77914646-77914665 MsG0180004437.01.T01:intron 10.0%
!!! ATATATATTTTCTAATACTT+TGG + Chr1:77915433-77915452 MsG0180004437.01.T01:intron 10.0%
!!! TTTTGATCAATAAATATTAA+TGG - Chr1:77916938-77916957 None:intergenic 10.0%
!! AAAGAAATTCTTTAATCTAT+TGG - Chr1:77918741-77918760 None:intergenic 15.0%
!! AGATAGTATTATAAAACAAA+AGG - Chr1:77917809-77917828 None:intergenic 15.0%
!! AGCATTTAATATAATCAATA+TGG + Chr1:77918947-77918966 MsG0180004437.01.T01:intron 15.0%
!! ATATCTATATGTCTAAATAT+TGG - Chr1:77917472-77917491 None:intergenic 15.0%
!! ATTAATATTTCTTTAATGGT+TGG + Chr1:77914898-77914917 MsG0180004437.01.T01:intron 15.0%
!! GAACTTATTAAAATTCTAAT+GGG - Chr1:77919684-77919703 None:intergenic 15.0%
!! GCATTTAATATAATCAATAT+GGG + Chr1:77918948-77918967 MsG0180004437.01.T01:intron 15.0%
!! GTTCATTAATATTTCTTTAA+TGG + Chr1:77914894-77914913 MsG0180004437.01.T01:intron 15.0%
!!! AAAAAGGTACAAAATAAAAA+GGG - Chr1:77919193-77919212 None:intergenic 15.0%
!!! AAAAATTGATAATTGTAACA+TGG - Chr1:77917439-77917458 None:intergenic 15.0%
!!! AACTTTTTAAATAAATGCAT+TGG + Chr1:77919104-77919123 MsG0180004437.01.T01:intron 15.0%
!!! TAATAATCATTTTGGTAAAT+AGG - Chr1:77913446-77913465 None:intergenic 15.0%
!!! TAATGAAAGTATTTTACATT+TGG + Chr1:77914379-77914398 MsG0180004437.01.T01:intron 15.0%
!!! TCAATAATATCCTTTAAAAA+TGG + Chr1:77914318-77914337 MsG0180004437.01.T01:intron 15.0%
!!! TGTTTTATTAATTTCTTTTG+TGG + Chr1:77915177-77915196 MsG0180004437.01.T01:intron 15.0%
!! AAAACTTAGAGATTATACTA+AGG + Chr1:77913867-77913886 MsG0180004437.01.T01:CDS 20.0%
!! AAACTTAGAGATTATACTAA+GGG + Chr1:77913868-77913887 MsG0180004437.01.T01:CDS 20.0%
!! AATTATAAACGATGATTGAT+AGG + Chr1:77918167-77918186 MsG0180004437.01.T01:intron 20.0%
!! ACAAATAATCAATGTTTCAT+TGG + Chr1:77913253-77913272 MsG0180004437.01.T01:intron 20.0%
!! ACTCAAAATAATTCTTCAAT+TGG + Chr1:77913587-77913606 MsG0180004437.01.T01:intron 20.0%
!! ATATAGATATTGAGTGAAAT+GGG + Chr1:77917482-77917501 MsG0180004437.01.T01:intron 20.0%
!! ATGCTTAAAGTGAAATTAAT+TGG - Chr1:77913624-77913643 None:intergenic 20.0%
!! ATTTAAACTTTATCCTCTAA+AGG - Chr1:77918150-77918169 None:intergenic 20.0%
!! GATATAATCCAATAATCAAT+AGG + Chr1:77913488-77913507 MsG0180004437.01.T01:intron 20.0%
!! GGAACTTATTAAAATTCTAA+TGG - Chr1:77919685-77919704 None:intergenic 20.0%
!! TAATATAATCCTGCAATAAA+TGG - Chr1:77914114-77914133 None:intergenic 20.0%
!! TACTTTGAATTATTTGCTTT+AGG + Chr1:77918010-77918029 MsG0180004437.01.T01:intron 20.0%
!! TAGATAAAATTGTACATTCA+AGG - Chr1:77916551-77916570 None:intergenic 20.0%
!! TATGTAGTATGTAGTATAAT+TGG + Chr1:77915009-77915028 MsG0180004437.01.T01:intron 20.0%
!! TATTATCACAATCATGAATT+TGG - Chr1:77914168-77914187 None:intergenic 20.0%
!! TCTATTAACTACAACTAATA+AGG - Chr1:77913186-77913205 None:intergenic 20.0%
!! TGAAATAATGTCAAATCTTA+AGG - Chr1:77918391-77918410 None:intergenic 20.0%
!! TGTTTGTTTATATACCAAAA+AGG - Chr1:77919209-77919228 None:intergenic 20.0%
!! TTAAGATTTGACATTATTTC+AGG + Chr1:77918390-77918409 MsG0180004437.01.T01:intron 20.0%
!! TTAATAAAACATTATTGGAG+AGG - Chr1:77915168-77915187 None:intergenic 20.0%
!! TTATATTGATACAATGAACA+AGG + Chr1:77916889-77916908 MsG0180004437.01.T01:CDS 20.0%
!! TTCAATTGGAATTTCAAATA+GGG - Chr1:77919570-77919589 None:intergenic 20.0%
!! TTTAAACTTTATCCTCTAAA+GGG - Chr1:77918149-77918168 None:intergenic 20.0%
!! TTTCAATTGGAATTTCAAAT+AGG - Chr1:77919571-77919590 None:intergenic 20.0%
!!! AAAACGTTTTCACAATTTAA+AGG - Chr1:77916750-77916769 None:intergenic 20.0%
!!! AAAATGAACTTTTGTAGATT+CGG + Chr1:77918776-77918795 MsG0180004437.01.T01:intron 20.0%
!!! AAATAGAAATGTAAAAGTGT+AGG + Chr1:77916807-77916826 MsG0180004437.01.T01:intron 20.0%
!!! AAGTATTTGGATATTTGTTT+TGG - Chr1:77916243-77916262 None:intergenic 20.0%
!!! AAGTTTTTCATTTCAGATAT+GGG + Chr1:77919249-77919268 MsG0180004437.01.T01:intron 20.0%
!!! AATGAATAAGAGTATATTAG+TGG + Chr1:77913228-77913247 MsG0180004437.01.T01:intron 20.0%
!!! AATTTTAATGTCTGAACTTA+TGG - Chr1:77914684-77914703 None:intergenic 20.0%
!!! ACAATAAAAGTATATAGCAA+AGG - Chr1:77918059-77918078 None:intergenic 20.0%
!!! ACTTTTTATATTCTTCTGAT+TGG + Chr1:77913648-77913667 MsG0180004437.01.T01:intron 20.0%
!!! AGTATTTGGATATTTGTTTT+GGG - Chr1:77916242-77916261 None:intergenic 20.0%
!!! ATGTTCTATGAAATTTTTTC+AGG + Chr1:77918670-77918689 MsG0180004437.01.T01:intron 20.0%
!!! CAAAAAGGTACAAAATAAAA+AGG - Chr1:77919194-77919213 None:intergenic 20.0%
!!! CAGAAATTTTCTTTTATTCT+GGG + Chr1:77916120-77916139 MsG0180004437.01.T01:CDS 20.0%
!!! CTTTTTATTTTGTACCTTTT+TGG + Chr1:77919192-77919211 MsG0180004437.01.T01:intron 20.0%
!!! GTATAAATTTTGATTGAGTT+TGG - Chr1:77918317-77918336 None:intergenic 20.0%
!!! TAAGTTTTTCATTTCAGATA+TGG + Chr1:77919248-77919267 MsG0180004437.01.T01:intron 20.0%
!!! TATTGTGAAAGTATATTTTG+TGG + Chr1:77918073-77918092 MsG0180004437.01.T01:CDS 20.0%
!!! TCATTTATTATCTAAGATCA+TGG + Chr1:77915553-77915572 MsG0180004437.01.T01:intron 20.0%
!!! TTAGTATAATCTCTAAGTTT+TGG - Chr1:77913868-77913887 None:intergenic 20.0%
!!! TTTCGTTTTTTTGTAACTTT+GGG + Chr1:77916767-77916786 MsG0180004437.01.T01:intron 20.0%
!!! TTTTCGTTTTTTTGTAACTT+TGG + Chr1:77916766-77916785 MsG0180004437.01.T01:intron 20.0%
! AAACTCACTTGTACTTTAAA+AGG - Chr1:77916277-77916296 None:intergenic 25.0%
! AAATTTAAACTATGCCAACA+TGG + Chr1:77918826-77918845 MsG0180004437.01.T01:intron 25.0%
! AATTTAAACTATGCCAACAT+GGG + Chr1:77918827-77918846 MsG0180004437.01.T01:intron 25.0%
! AGAAAGAAATCTAACTAGAA+GGG - Chr1:77915880-77915899 None:intergenic 25.0%
! ATGTCAACATGTATTTAACT+AGG - Chr1:77918592-77918611 None:intergenic 25.0%
! ATTCTGAATTCCTATTGATA+AGG + Chr1:77916346-77916365 MsG0180004437.01.T01:intron 25.0%
! CAAAATAATTCTTCAATTGG+AGG + Chr1:77913590-77913609 MsG0180004437.01.T01:intron 25.0%
! CATATAGATATTGAGTGAAA+TGG + Chr1:77917481-77917500 MsG0180004437.01.T01:intron 25.0%
! CATCAATAACAGTATTAGTA+TGG + Chr1:77916071-77916090 MsG0180004437.01.T01:CDS 25.0%
! CTTAATAACTTACATATGTG+TGG - Chr1:77913800-77913819 None:intergenic 25.0%
! GGATAGGATTAATATATTGA+AGG + Chr1:77917741-77917760 MsG0180004437.01.T01:intron 25.0%
! GTTGCAAATATACTATCTAA+AGG + Chr1:77913841-77913860 MsG0180004437.01.T01:CDS 25.0%
! GTTTAGGCATAATAATAGTA+TGG + Chr1:77915682-77915701 MsG0180004437.01.T01:intron 25.0%
! TAAGCTTACTATAAAAGACT+TGG + Chr1:77917132-77917151 MsG0180004437.01.T01:intron 25.0%
! TAATATAATCAATATGGGCA+TGG + Chr1:77918953-77918972 MsG0180004437.01.T01:intron 25.0%
! TATGTATTCAATCAAAGTGT+AGG + Chr1:77917187-77917206 MsG0180004437.01.T01:intron 25.0%
! TCAATTAATATTACGCCAAA+AGG - Chr1:77914810-77914829 None:intergenic 25.0%
! TCAGTTTCAAATTGTTTGAA+AGG - Chr1:77919792-77919811 None:intergenic 25.0%
! TGATAATATCTTGTCACATA+TGG + Chr1:77914180-77914199 MsG0180004437.01.T01:CDS 25.0%
! TGTCAACATGTATTTAACTA+GGG - Chr1:77918591-77918610 None:intergenic 25.0%
! TGTTATTGAACTACTATTGA+AGG + Chr1:77916616-77916635 MsG0180004437.01.T01:intron 25.0%
! TTATCCTAAATAATGCTATG+AGG + Chr1:77916960-77916979 MsG0180004437.01.T01:intron 25.0%
! TTGTTTATTCGATCATTTGA+AGG + Chr1:77914567-77914586 MsG0180004437.01.T01:intron 25.0%
!! AAATGTGTTTTCCTGATTTT+CGG + Chr1:77914346-77914365 MsG0180004437.01.T01:intron 25.0%
!! AATTGATTATCAGTTTGTTC+TGG + Chr1:77914824-77914843 MsG0180004437.01.T01:intron 25.0%
!! AATTTCTGTGAGGATTTTTA+TGG + Chr1:77918638-77918657 MsG0180004437.01.T01:intron 25.0%
!! ATTATTGACTAACTAAGAAC+TGG - Chr1:77914306-77914325 None:intergenic 25.0%
!! ATTTCTGTGAGGATTTTTAT+GGG + Chr1:77918639-77918658 MsG0180004437.01.T01:intron 25.0%
!! CCATTTTCAGCAATTTTATT+GGG + Chr1:77918985-77919004 MsG0180004437.01.T01:intron 25.0%
!! GCAGAAATTTTCTTTTATTC+TGG + Chr1:77916119-77916138 MsG0180004437.01.T01:CDS 25.0%
!! TAGCTAGAAGTATAATTGAA+AGG - Chr1:77913769-77913788 None:intergenic 25.0%
!!! AAAGTATTTTACATTTGGAG+TGG + Chr1:77914384-77914403 MsG0180004437.01.T01:intron 25.0%
!!! AATATTCATTGCTATTTGAC+TGG + Chr1:77916486-77916505 MsG0180004437.01.T01:intron 25.0%
!!! AATTTTTTCAGGTATTGTGA+TGG + Chr1:77918681-77918700 MsG0180004437.01.T01:intron 25.0%
!!! ATTAGTTGTGTTGATTTCAA+CGG + Chr1:77913133-77913152 MsG0180004437.01.T01:CDS 25.0%
!!! CATTTACACACCATTTTTAA+AGG - Chr1:77914331-77914350 None:intergenic 25.0%
!!! TGGTAGCATTTTAAAATCTT+TGG + Chr1:77917279-77917298 MsG0180004437.01.T01:intron 25.0%
!!! TTCATTCTATGTTAATTTGC+TGG + Chr1:77917327-77917346 MsG0180004437.01.T01:intron 25.0%
AAACCTTATAAGTACTACCT+AGG - Chr1:77915274-77915293 None:intergenic 30.0%
AACAAAAATTGTCGAGATTG+TGG - Chr1:77914412-77914431 None:intergenic 30.0%
AATTGGAATTTCAAATAGGG+TGG - Chr1:77919567-77919586 None:intergenic 30.0%
ACAGAAAAACTTAATTCGCT+GGG - Chr1:77914970-77914989 None:intergenic 30.0%
ACATAGAATGAAAGTAAGTC+AGG - Chr1:77917319-77917338 None:intergenic 30.0%
AGACACTTATAATGAGATGA+GGG + Chr1:77913416-77913435 MsG0180004437.01.T01:intron 30.0%
ATACCTTAAATTCAGGACTT+AGG - Chr1:77915342-77915361 None:intergenic 30.0%
ATACTACATATAACACATGC+AGG - Chr1:77914999-77915018 None:intergenic 30.0%
ATATACTAACAGATCCTCAA+AGG - Chr1:77914523-77914542 None:intergenic 30.0%
ATGTTTCATTGGTATTAACC+TGG + Chr1:77913264-77913283 MsG0180004437.01.T01:intron 30.0%
ATTTCAGGAAATTGATGAAC+CGG + Chr1:77918405-77918424 MsG0180004437.01.T01:intron 30.0%
CAATTCTTGAACAAGATGAT+GGG - Chr1:77919536-77919555 None:intergenic 30.0%
CCCAATAAAATTGCTGAAAA+TGG - Chr1:77918988-77919007 None:intergenic 30.0%
CTAGCAAAGAAGAAACAAAA+TGG - Chr1:77913973-77913992 None:intergenic 30.0%
CTCTACACCAATTAAATCAT+AGG - Chr1:77917647-77917666 None:intergenic 30.0%
CTGAAACATAAAATGCAGAT+TGG - Chr1:77919706-77919725 None:intergenic 30.0%
CTTAAGACAAAATGATACAG+TGG - Chr1:77919232-77919251 None:intergenic 30.0%
GAGAAAGAAATCTAACTAGA+AGG - Chr1:77915881-77915900 None:intergenic 30.0%
GCAAACAATACCTTAAATTC+AGG - Chr1:77915349-77915368 None:intergenic 30.0%
GCAACATCCTATGATTTAAT+TGG + Chr1:77917637-77917656 MsG0180004437.01.T01:intron 30.0%
GGAAATCAAATTGCATCAAA+AGG + Chr1:77914845-77914864 MsG0180004437.01.T01:intron 30.0%
GTAGATAAACTAATTGCTAG+AGG - Chr1:77916374-77916393 None:intergenic 30.0%
GTATGTTGTTAACTTTCTCA+AGG + Chr1:77916829-77916848 MsG0180004437.01.T01:CDS 30.0%
GTTAGATTTCTTTCTCACTT+TGG + Chr1:77915885-77915904 MsG0180004437.01.T01:intron 30.0%
TAACTTCTGACTTTGTAAGA+GGG + Chr1:77919417-77919436 MsG0180004437.01.T01:intron 30.0%
TACCTTAAATTCAGGACTTA+GGG - Chr1:77915341-77915360 None:intergenic 30.0%
TAGGTAGTACTTATAAGGTT+TGG + Chr1:77915273-77915292 MsG0180004437.01.T01:intron 30.0%
TATTTCAGCTCATTATGTCT+CGG + Chr1:77919822-77919841 MsG0180004437.01.T01:intron 30.0%
TCAATTCTTGAACAAGATGA+TGG - Chr1:77919537-77919556 None:intergenic 30.0%
TCCTTAGAGAATCAACTAAA+AGG + Chr1:77915604-77915623 MsG0180004437.01.T01:intron 30.0%
TCTAAATAAGAATCCAAGCA+TGG - Chr1:77919857-77919876 None:intergenic 30.0%
TGTTTCTCAATTGAAGAGTT+TGG + Chr1:77913529-77913548 MsG0180004437.01.T01:intron 30.0%
TTCTATTCATGTTTGGATGA+GGG + Chr1:77914923-77914942 MsG0180004437.01.T01:intron 30.0%
TTCTTTATGTGCATAGTCAA+AGG + Chr1:77913707-77913726 MsG0180004437.01.T01:intron 30.0%
! AAAGTATATTTTGTGGTCCT+TGG + Chr1:77918080-77918099 MsG0180004437.01.T01:CDS 30.0%
! AATGGGTATAATGATTTTGC+AGG + Chr1:77917499-77917518 MsG0180004437.01.T01:intron 30.0%
! AATTCATTGGTATTCTGAAG+TGG + Chr1:77913359-77913378 MsG0180004437.01.T01:intron 30.0%
! ACGTTTTCACAATTTAAAGG+TGG - Chr1:77916747-77916766 None:intergenic 30.0%
! AGAAGTATAATTGAAAGGCA+GGG - Chr1:77913764-77913783 None:intergenic 30.0%
! ATAGTTTTTCCCTTTTTCCT+AGG - Chr1:77917777-77917796 None:intergenic 30.0%
! ATGGGTATAATGATTTTGCA+GGG + Chr1:77917500-77917519 MsG0180004437.01.T01:intron 30.0%
! ATTTGTTGAGATTGAGAGTT+CGG + Chr1:77915230-77915249 MsG0180004437.01.T01:intron 30.0%
! CTTGGATTCTTATTTAGACA+AGG + Chr1:77919859-77919878 MsG0180004437.01.T01:CDS 30.0%
! TACGCGGTTAATAATCATTT+TGG - Chr1:77913454-77913473 None:intergenic 30.0%
! TAGAAGTATAATTGAAAGGC+AGG - Chr1:77913765-77913784 None:intergenic 30.0%
! TTCATAATTGTAGCACCTTT+TGG + Chr1:77914792-77914811 MsG0180004437.01.T01:intron 30.0%
! TTTAGAATGCTATAGCTTGA+TGG + Chr1:77916308-77916327 MsG0180004437.01.T01:intron 30.0%
! TTTCTGTGAGGATTTTTATG+GGG + Chr1:77918640-77918659 MsG0180004437.01.T01:intron 30.0%
!! ACCTTATAAGTCAGTTTTGT+GGG + Chr1:77915305-77915324 MsG0180004437.01.T01:intron 30.0%
!! GCCATTTTCAGCAATTTTAT+TGG + Chr1:77918984-77919003 MsG0180004437.01.T01:intron 30.0%
!! GTCTCTTGTTTGATTTGTTT+AGG + Chr1:77915666-77915685 MsG0180004437.01.T01:intron 30.0%
!! TCCTTTTAGTTGATTCTCTA+AGG - Chr1:77915608-77915627 None:intergenic 30.0%
!! TTCAACTGTTGATTCTTCAA+TGG + Chr1:77918258-77918277 MsG0180004437.01.T01:intron 30.0%
!!! AAAACTAGCTTTTTGTCAAC+AGG - Chr1:77917160-77917179 None:intergenic 30.0%
!!! ATTGACAGTTTTATTGTTGC+TGG + Chr1:77915712-77915731 MsG0180004437.01.T01:intron 30.0%
!!! GTCTTGTTTTTTCTCTCAAT+AGG + Chr1:77915031-77915050 MsG0180004437.01.T01:intron 30.0%
!!! TTGTTTTTTCTCTCAATAGG+TGG + Chr1:77915034-77915053 MsG0180004437.01.T01:intron 30.0%
AAAGAAATACATGGACTCCT+CGG - Chr1:77917839-77917858 None:intergenic 35.0%
AAAGAAGAAACAAAATGGCG+TGG - Chr1:77913968-77913987 None:intergenic 35.0%
AAATGAACTACTGACACCAA+TGG - Chr1:77917862-77917881 None:intergenic 35.0%
AAATGCTAATGAGTTCCCTA+AGG + Chr1:77919008-77919027 MsG0180004437.01.T01:intron 35.0%
AACTTCTGACTTTGTAAGAG+GGG + Chr1:77919418-77919437 MsG0180004437.01.T01:intron 35.0%
AATACTATCTGAATTGACCG+AGG + Chr1:77917819-77917838 MsG0180004437.01.T01:intron 35.0%
AATAGACACTTCATTGTTGC+AGG - Chr1:77914495-77914514 None:intergenic 35.0%
AATATGCGTATTCAGTGCAT+TGG + Chr1:77919067-77919086 MsG0180004437.01.T01:intron 35.0%
AATGCTAATGAGTTCCCTAA+GGG + Chr1:77919009-77919028 MsG0180004437.01.T01:intron 35.0%
AATTCTGCAAGAGAAGTCTA+TGG + Chr1:77914700-77914719 MsG0180004437.01.T01:CDS 35.0%
AGTAACCATTGATGCTATTG+CGG + Chr1:77919473-77919492 MsG0180004437.01.T01:intron 35.0%
ATAATACCTCTCCATCAACA+AGG - Chr1:77915121-77915140 None:intergenic 35.0%
ATAGACACTTCATTGTTGCA+GGG - Chr1:77914494-77914513 None:intergenic 35.0%
ATCCATATGAAGTTCTGTTC+AGG + Chr1:77918466-77918485 MsG0180004437.01.T01:intron 35.0%
ATGACTCAACCTAGGAAAAA+GGG + Chr1:77917765-77917784 MsG0180004437.01.T01:intron 35.0%
ATTGTGTAGTCATTGGGTTA+TGG + Chr1:77918365-77918384 MsG0180004437.01.T01:intron 35.0%
ATTTAAAGGTGGTTAACGCA+AGG - Chr1:77916736-77916755 None:intergenic 35.0%
CAAGAGAAGTCTATGGATAT+GGG + Chr1:77914707-77914726 MsG0180004437.01.T01:CDS 35.0%
CACCAATGGAAAGAAATACA+TGG - Chr1:77917848-77917867 None:intergenic 35.0%
CATAACAAATATTGCAGTGC+CGG + Chr1:77915486-77915505 MsG0180004437.01.T01:intron 35.0%
CCAAACAGTAATGTGAATGT+TGG + Chr1:77919737-77919756 MsG0180004437.01.T01:intron 35.0%
CCAACATTCACATTACTGTT+TGG - Chr1:77919740-77919759 None:intergenic 35.0%
CCATCCTCATAGCATTATTT+AGG - Chr1:77916967-77916986 None:intergenic 35.0%
CCTAAATAATGCTATGAGGA+TGG + Chr1:77916964-77916983 MsG0180004437.01.T01:intron 35.0%
CTAGAAGGGAATATACTAGT+AGG - Chr1:77915866-77915885 None:intergenic 35.0%
CTGCAGATATAATTTCTGTG+AGG + Chr1:77918628-77918647 MsG0180004437.01.T01:intron 35.0%
CTTCTATTCATGTTTGGATG+AGG + Chr1:77914922-77914941 MsG0180004437.01.T01:intron 35.0%
GAAAATAGAAGTCTTCCATG+TGG - Chr1:77917373-77917392 None:intergenic 35.0%
GAAACTGAAGTTTGTAGAAG+TGG + Chr1:77915960-77915979 MsG0180004437.01.T01:CDS 35.0%
GACAGAAAAACTTAATTCGC+TGG - Chr1:77914971-77914990 None:intergenic 35.0%
GAGACACTTATAATGAGATG+AGG + Chr1:77913415-77913434 MsG0180004437.01.T01:intron 35.0%
GCACACAACATTATAAACAC+TGG + Chr1:77915530-77915549 MsG0180004437.01.T01:intron 35.0%
GCATTTGTAAACTAGTGTCT+TGG + Chr1:77915575-77915594 MsG0180004437.01.T01:intron 35.0%
GTAACTTCTGACTTTGTAAG+AGG + Chr1:77919416-77919435 MsG0180004437.01.T01:intron 35.0%
GTAATATGTATGAGCTGAGT+GGG + Chr1:77917396-77917415 MsG0180004437.01.T01:intron 35.0%
GTCCATGTATTTCTTTCCAT+TGG + Chr1:77917843-77917862 MsG0180004437.01.T01:intron 35.0%
GTGTTTATAATGTTGTGTGC+AGG - Chr1:77915530-77915549 None:intergenic 35.0%
GTTAACTTTCTCAAGGAACA+TGG + Chr1:77916836-77916855 MsG0180004437.01.T01:CDS 35.0%
GTTGGACTTCTATTCATGTT+TGG + Chr1:77914916-77914935 MsG0180004437.01.T01:intron 35.0%
TATGACTCAACCTAGGAAAA+AGG + Chr1:77917764-77917783 MsG0180004437.01.T01:intron 35.0%
TCGAATTGTTCTCATATACG+CGG - Chr1:77913470-77913489 None:intergenic 35.0%
TCTATTCATGTTTGGATGAG+GGG + Chr1:77914924-77914943 MsG0180004437.01.T01:intron 35.0%
TGACTAACTAAGAACTGGTT+GGG - Chr1:77914301-77914320 None:intergenic 35.0%
TGGATGGATAACAGATGATA+TGG - Chr1:77916170-77916189 None:intergenic 35.0%
TGTAATATGTATGAGCTGAG+TGG + Chr1:77917395-77917414 MsG0180004437.01.T01:intron 35.0%
TTCATTTCAGATATGGGTTC+AGG + Chr1:77919255-77919274 MsG0180004437.01.T01:intron 35.0%
TTGACTAACTAAGAACTGGT+TGG - Chr1:77914302-77914321 None:intergenic 35.0%
TTGTAACATGGATCAGTGAT+TGG - Chr1:77917427-77917446 None:intergenic 35.0%
TTTATTTACCAGGCTGAGAT+TGG + Chr1:77914656-77914675 MsG0180004437.01.T01:intron 35.0%
TTTCATTGGTATTAACCTGG+TGG + Chr1:77913267-77913286 MsG0180004437.01.T01:intron 35.0%
! ACCCACAAAACTGACTTATA+AGG - Chr1:77915309-77915328 None:intergenic 35.0%
! AGGTCATTGATATGCCTTTT+GGG + Chr1:77919285-77919304 MsG0180004437.01.T01:CDS 35.0%
! ATATGGGTTCAGGTTTGTAT+AGG + Chr1:77919265-77919284 MsG0180004437.01.T01:intron 35.0%
! CAAGGTCTCCTATTGATTAT+TGG - Chr1:77913499-77913518 None:intergenic 35.0%
! CACCTTATAAGTCAGTTTTG+TGG + Chr1:77915304-77915323 MsG0180004437.01.T01:intron 35.0%
! GGACACTTTGTTGAAGTATT+TGG - Chr1:77916256-77916275 None:intergenic 35.0%
! TAAGTGGATTTCAGGTATGT+TGG + Chr1:77914212-77914231 MsG0180004437.01.T01:intron 35.0%
! TAAGTTGTTGTTCTCTGTGT+AGG + Chr1:77913816-77913835 MsG0180004437.01.T01:intron 35.0%
! TAGGTCATTGATATGCCTTT+TGG + Chr1:77919284-77919303 MsG0180004437.01.T01:CDS 35.0%
! TAGTTCATTTTGAGCAGTGA+AGG + Chr1:77917872-77917891 MsG0180004437.01.T01:intron 35.0%
! TGTTTTGTAGTCCCAAACAA+CGG - Chr1:77919600-77919619 None:intergenic 35.0%
! TTTTACACTCTTTACTTGCG+AGG + Chr1:77918289-77918308 MsG0180004437.01.T01:intron 35.0%
!! AATCTTTGGTAGCTTTGAGT+TGG + Chr1:77917293-77917312 MsG0180004437.01.T01:intron 35.0%
!! AATTGAAGAGTTTGGTGTAC+TGG + Chr1:77913537-77913556 MsG0180004437.01.T01:intron 35.0%
!! ACTGTTGATTCTTCAATGGA+AGG + Chr1:77918262-77918281 MsG0180004437.01.T01:intron 35.0%
!! ATTGAAGAGTTTGGTGTACT+GGG + Chr1:77913538-77913557 MsG0180004437.01.T01:intron 35.0%
!! CTTCTGATTGGCTTCATTTA+AGG + Chr1:77913660-77913679 MsG0180004437.01.T01:intron 35.0%
!! TACCATTTTTGTTCCCATGT+TGG - Chr1:77918843-77918862 None:intergenic 35.0%
!! TGTTAATTTGCTGGCTTTCA+CGG + Chr1:77917336-77917355 MsG0180004437.01.T01:intron 35.0%
!! TTCTGAAGTGGCAATTAACT+TGG + Chr1:77913371-77913390 MsG0180004437.01.T01:intron 35.0%
!! TTGGTCTTCTTTGGCATTTT+AGG + Chr1:77915746-77915765 MsG0180004437.01.T01:intron 35.0%
!!! ATATGCCTTTTGGGTTATAC+AGG + Chr1:77919294-77919313 MsG0180004437.01.T01:CDS 35.0%
AAACTCAACACCAGCAAACA+TGG - Chr1:77916409-77916428 None:intergenic 40.0%
AACTCAACACCAGCAAACAT+GGG - Chr1:77916408-77916427 None:intergenic 40.0%
AAGAAAGAGATGCCCTTTAG+AGG + Chr1:77918134-77918153 MsG0180004437.01.T01:intron 40.0%
AAGGACCTGTATAACCCAAA+AGG - Chr1:77919302-77919321 None:intergenic 40.0%
ACGGTTAATGATGAACCACA+TGG + Chr1:77917355-77917374 MsG0180004437.01.T01:intron 40.0%
AGAATTATATTCCTGCCCCT+AGG + Chr1:77917950-77917969 MsG0180004437.01.T01:intron 40.0%
AGTCTATGGATATGGGTTTG+AGG + Chr1:77914714-77914733 MsG0180004437.01.T01:CDS 40.0%
AGTGGAGTTGGATTCAATTC+AGG + Chr1:77913912-77913931 MsG0180004437.01.T01:CDS 40.0%
AGTTGACATGCTTTACATCG+AGG + Chr1:77915773-77915792 MsG0180004437.01.T01:intron 40.0%
AGTTTATAGCGAGGTGTGAA+TGG + Chr1:77917259-77917278 MsG0180004437.01.T01:intron 40.0%
ATCTGTCTTGTCCGAAAATC+AGG - Chr1:77914360-77914379 None:intergenic 40.0%
CAGCATGCATGTCAAGTATT+GGG - Chr1:77915826-77915845 None:intergenic 40.0%
CATATGGAAACTCTGCTAAG+TGG + Chr1:77914196-77914215 MsG0180004437.01.T01:CDS 40.0%
CATTATTATCCCTCCGAGAA+TGG + Chr1:77915088-77915107 MsG0180004437.01.T01:CDS 40.0%
CCAAACTGCTATGATGCTAT+AGG + Chr1:77919357-77919376 MsG0180004437.01.T01:CDS 40.0%
CCAATGCTTGTATGTAAGCA+CGG - Chr1:77917597-77917616 None:intergenic 40.0%
CCAGTCACATTAACATACCA+AGG - Chr1:77918100-77918119 None:intergenic 40.0%
CCTATAGCATCATAGCAGTT+TGG - Chr1:77919360-77919379 None:intergenic 40.0%
CCTCGCTATAAACTTCACTT+CGG - Chr1:77917253-77917272 None:intergenic 40.0%
CCTTGGTATGTTAATGTGAC+TGG + Chr1:77918097-77918116 MsG0180004437.01.T01:intron 40.0%
CTAAGAACCTGCACATATAG+AGG - Chr1:77917566-77917585 None:intergenic 40.0%
CTCCTGAACAGAACTTCATA+TGG - Chr1:77918471-77918490 None:intergenic 40.0%
CTCGCTATAAACTTCACTTC+GGG - Chr1:77917252-77917271 None:intergenic 40.0%
GAATTATATTCCTGCCCCTA+GGG + Chr1:77917951-77917970 MsG0180004437.01.T01:intron 40.0%
GAATTTCAAATAGGGTGGCT+AGG - Chr1:77919562-77919581 None:intergenic 40.0%
GCAAGAGAAGTCTATGGATA+TGG + Chr1:77914706-77914725 MsG0180004437.01.T01:CDS 40.0%
GCAGAGATTGTGTAGTCATT+GGG + Chr1:77918359-77918378 MsG0180004437.01.T01:intron 40.0%
GCTAACAAGAGAACTAGTGA+AGG + Chr1:77916685-77916704 MsG0180004437.01.T01:intron 40.0%
GCTAGAGGAACCTTATCAAT+AGG - Chr1:77916359-77916378 None:intergenic 40.0%
GCTATATGAGGAATCAAAGC+CGG - Chr1:77918427-77918446 None:intergenic 40.0%
GTAAACTAGTGTCTTGGCTT+GGG + Chr1:77915581-77915600 MsG0180004437.01.T01:intron 40.0%
GTAGCGATGATCTTACATGT+AGG + Chr1:77914032-77914051 MsG0180004437.01.T01:intron 40.0%
GTCCCTAAGTCCTGAATTTA+AGG + Chr1:77915336-77915355 MsG0180004437.01.T01:intron 40.0%
GTGTCTATTTACCACCTTTG+AGG + Chr1:77914506-77914525 MsG0180004437.01.T01:intron 40.0%
GTTTGTAGAAGTGGACACAA+TGG + Chr1:77915969-77915988 MsG0180004437.01.T01:CDS 40.0%
TACTAACAGATCCTCAAAGG+TGG - Chr1:77914520-77914539 None:intergenic 40.0%
TAGACACTTCATTGTTGCAG+GGG - Chr1:77914493-77914512 None:intergenic 40.0%
TATTAAGTGCCATAGCAAGC+TGG - Chr1:77918537-77918556 None:intergenic 40.0%
TCGCTATAAACTTCACTTCG+GGG - Chr1:77917251-77917270 None:intergenic 40.0%
TGAAAACTGACCCGTTGTTT+GGG + Chr1:77919586-77919605 MsG0180004437.01.T01:intron 40.0%
TGAAGTCAAATACCTGCAGA+TGG - Chr1:77916190-77916209 None:intergenic 40.0%
TGCAGAGATTGTGTAGTCAT+TGG + Chr1:77918358-77918377 MsG0180004437.01.T01:intron 40.0%
TGCCAACATGGGAACAAAAA+TGG + Chr1:77918838-77918857 MsG0180004437.01.T01:intron 40.0%
TGTAAACTAGTGTCTTGGCT+TGG + Chr1:77915580-77915599 MsG0180004437.01.T01:intron 40.0%
TGTGCGCGATTCTTAAGAAA+AGG + Chr1:77913110-77913129 MsG0180004437.01.T01:CDS 40.0%
TTATATCTGCAGCAGATGCA+AGG - Chr1:77918620-77918639 None:intergenic 40.0%
TTATGCTCCTCTATATGTGC+AGG + Chr1:77917556-77917575 MsG0180004437.01.T01:CDS 40.0%
TTGAAAACTGACCCGTTGTT+TGG + Chr1:77919585-77919604 MsG0180004437.01.T01:intron 40.0%
TTTAGCCGCAATAGCATCAA+TGG - Chr1:77919481-77919500 None:intergenic 40.0%
! AACTCTGCTAAGTGGATTTC+AGG + Chr1:77914204-77914223 MsG0180004437.01.T01:CDS 40.0%
! ACAACGGGTCAGTTTTCAAT+TGG - Chr1:77919584-77919603 None:intergenic 40.0%
! ACAACTCTGCCATTTATTGC+AGG + Chr1:77914102-77914121 MsG0180004437.01.T01:intron 40.0%
! ACAGCAGATCGATTCTTTAG+CGG - Chr1:77917709-77917728 None:intergenic 40.0%
! AGCATTGGAGAAACTGCAAT+TGG + Chr1:77917609-77917628 MsG0180004437.01.T01:intron 40.0%
! CTAGGGTTTTTATGCACAGA+AGG - Chr1:77918574-77918593 None:intergenic 40.0%
! GTTTTGTAGTCCCAAACAAC+GGG - Chr1:77919599-77919618 None:intergenic 40.0%
! TAACGCAAGGAGGTATACAA+TGG - Chr1:77916723-77916742 None:intergenic 40.0%
! TCTCACTTTGGATGCTTTTC+AGG + Chr1:77915897-77915916 MsG0180004437.01.T01:intron 40.0%
! TGAGAATGATTTGCGCAAAG+TGG + Chr1:77913894-77913913 MsG0180004437.01.T01:CDS 40.0%
! TGCACATATAGAGGAGCATA+AGG - Chr1:77917557-77917576 None:intergenic 40.0%
! TGTCTCTTCTTGGTCTTCTT+TGG + Chr1:77915737-77915756 MsG0180004437.01.T01:intron 40.0%
! TTGAAGGTATGACTCAACCT+AGG + Chr1:77917757-77917776 MsG0180004437.01.T01:intron 40.0%
! TTGGGTTATACAGGTCCTTT+TGG + Chr1:77919303-77919322 MsG0180004437.01.T01:CDS 40.0%
! TTTGAAACAAGGGTCTGATC+TGG + Chr1:77915402-77915421 MsG0180004437.01.T01:intron 40.0%
! TTTGAGGCTTAAGAATCGCA+AGG + Chr1:77914730-77914749 MsG0180004437.01.T01:CDS 40.0%
!! AACTCTTAAAGAGTGCCCTT+AGG - Chr1:77919027-77919046 None:intergenic 40.0%
!! AAGGGCATCTCTTTCTTTAG+AGG - Chr1:77918131-77918150 None:intergenic 40.0%
!! ACTCTTAAAGAGTGCCCTTA+GGG - Chr1:77919026-77919045 None:intergenic 40.0%
!! TAAAAGGAGTCTAGCTCTTC+TGG + Chr1:77915620-77915639 MsG0180004437.01.T01:intron 40.0%
!! TTCGGCATTGACTAGAGATA+GGG + Chr1:77915248-77915267 MsG0180004437.01.T01:intron 40.0%
!!! ATCTGCTGTTTTTGCTCTTG+GGG + Chr1:77917720-77917739 MsG0180004437.01.T01:intron 40.0%
!!! GATCTGCTGTTTTTGCTCTT+GGG + Chr1:77917719-77917738 MsG0180004437.01.T01:intron 40.0%
!!! GGGAAATGCATTTTTAGTGG+GGG - Chr1:77917230-77917249 None:intergenic 40.0%
!!! GGGGAAATGCATTTTTAGTG+GGG - Chr1:77917231-77917250 None:intergenic 40.0%
!!! GGGGGAAATGCATTTTTAGT+GGG - Chr1:77917232-77917251 None:intergenic 40.0%
AAACCAGCAACAGATCCCTA+GGG - Chr1:77917969-77917988 None:intergenic 45.0%
AACCTGAGCTTGAAAAGCTC+AGG + Chr1:77916022-77916041 MsG0180004437.01.T01:CDS 45.0%
AACTTAATTCGCTGGGTAGC+AGG - Chr1:77914963-77914982 None:intergenic 45.0%
ACAAGGATGTCCACCATTCT+CGG - Chr1:77915104-77915123 None:intergenic 45.0%
ACTTAATTCGCTGGGTAGCA+GGG - Chr1:77914962-77914981 None:intergenic 45.0%
AGAGCTGCTTCAGCTATATG+AGG - Chr1:77918439-77918458 None:intergenic 45.0%
AGGCAGGGACAACAAAAAGA+TGG - Chr1:77913749-77913768 None:intergenic 45.0%
AGTCAGAAGTTACCTGATGC+TGG - Chr1:77919409-77919428 None:intergenic 45.0%
ATCCAAGCTGGCTAAGTTTG+TGG + Chr1:77915061-77915080 MsG0180004437.01.T01:CDS 45.0%
ATTGACTAGAGATAGGGCCT+AGG + Chr1:77915254-77915273 MsG0180004437.01.T01:intron 45.0%
CAATAGGAGACCTTGCTTGT+CGG + Chr1:77913504-77913523 MsG0180004437.01.T01:intron 45.0%
CAGTGAAGGTAGTCAAGACT+AGG + Chr1:77917886-77917905 MsG0180004437.01.T01:intron 45.0%
CCGAAGTGAAGTTTATAGCG+AGG + Chr1:77917250-77917269 MsG0180004437.01.T01:intron 45.0%
CCGTGCTTACATACAAGCAT+TGG + Chr1:77917594-77917613 MsG0180004437.01.T01:intron 45.0%
CGCTATAAACTTCACTTCGG+GGG - Chr1:77917250-77917269 None:intergenic 45.0%
CTAACTAAGAACTGGTTGGG+TGG - Chr1:77914298-77914317 None:intergenic 45.0%
GAGAAACAAACCGACAAGCA+AGG - Chr1:77913517-77913536 None:intergenic 45.0%
GATGCTATTGCGGCTAAAGA+AGG + Chr1:77919483-77919502 MsG0180004437.01.T01:intron 45.0%
GCAGCATGCATGTCAAGTAT+TGG - Chr1:77915827-77915846 None:intergenic 45.0%
GGGCCTAGGTAGTACTTATA+AGG + Chr1:77915268-77915287 MsG0180004437.01.T01:intron 45.0%
GGGTTTCAGTCTTCAGTAGA+AGG + Chr1:77919438-77919457 MsG0180004437.01.T01:intron 45.0%
GTAGAGACAAGAAGCAACAG+CGG + Chr1:77917661-77917680 MsG0180004437.01.T01:intron 45.0%
GTCAAATACCTGCAGATGGA+TGG - Chr1:77916186-77916205 None:intergenic 45.0%
TAAACCAGCAACAGATCCCT+AGG - Chr1:77917970-77917989 None:intergenic 45.0%
TAAAGGTGGTTAACGCAAGG+AGG - Chr1:77916733-77916752 None:intergenic 45.0%
TATTATCCCTCCGAGAATGG+TGG + Chr1:77915091-77915110 MsG0180004437.01.T01:CDS 45.0%
TCGCATAATACACCAGCATC+AGG + Chr1:77919394-77919413 MsG0180004437.01.T01:intron 45.0%
TCTGTTATCCATCCATCTGC+AGG + Chr1:77916175-77916194 MsG0180004437.01.T01:CDS 45.0%
TGCTCATCCATGACACCAAA+AGG - Chr1:77919321-77919340 None:intergenic 45.0%
TTAGACAAGGTCAGCTTCCT+GGG + Chr1:77919872-77919891 MsG0180004437.01.T01:CDS 45.0%
TTATGGAACCAATCTCAGCC+TGG - Chr1:77914667-77914686 None:intergenic 45.0%
TTCAGCTCATTATGTCTCGG+AGG + Chr1:77919825-77919844 MsG0180004437.01.T01:intron 45.0%
TTCCACAAACTTAGCCAGCT+TGG - Chr1:77915066-77915085 None:intergenic 45.0%
TTTAGACAAGGTCAGCTTCC+TGG + Chr1:77919871-77919890 MsG0180004437.01.T01:CDS 45.0%
! TGATTTGCGCAAAGTGGAGT+TGG + Chr1:77913900-77913919 MsG0180004437.01.T01:CDS 45.0%
! TGGTATTAACCTGGTGGTGT+TGG + Chr1:77913273-77913292 MsG0180004437.01.T01:intron 45.0%
!! ATGGTGGACATCCTTGTTGA+TGG + Chr1:77915107-77915126 MsG0180004437.01.T01:CDS 45.0%
!! CATGCATGTCAAGTATTGGG+TGG - Chr1:77915823-77915842 None:intergenic 45.0%
!! CGGGGGAAATGCATTTTTAG+TGG - Chr1:77917233-77917252 None:intergenic 45.0%
!! CTGTCCAGGCTTTGAAACAA+GGG + Chr1:77915392-77915411 MsG0180004437.01.T01:intron 45.0%
!! GCACTTAAGGGCACTCTTTA+AGG - Chr1:77919147-77919166 None:intergenic 45.0%
!! GTTCGGCATTGACTAGAGAT+AGG + Chr1:77915247-77915266 MsG0180004437.01.T01:intron 45.0%
!! GTTGCTGGTTTGTCTCTTCT+TGG + Chr1:77915727-77915746 MsG0180004437.01.T01:intron 45.0%
!! TGGGTGGTTCTGCTTTTGAT+CGG - Chr1:77914282-77914301 None:intergenic 45.0%
!!! CGATCTGCTGTTTTTGCTCT+TGG + Chr1:77917718-77917737 MsG0180004437.01.T01:intron 45.0%
!!! CTGTTTTTGCTCTTGGGGAT+AGG + Chr1:77917725-77917744 MsG0180004437.01.T01:intron 45.0%
!!! GGATGCTTTTCAGGTCAATG+AGG + Chr1:77915906-77915925 MsG0180004437.01.T01:intron 45.0%
!!! TACAGGTCCTTTTGGTGTCA+TGG + Chr1:77919311-77919330 MsG0180004437.01.T01:CDS 45.0%
!! AAAAAAAAAAAAAAATTCAT+TGG + Chr1:77913346-77913365 MsG0180004437.01.T01:intron 5.0%
AACCAGCAACAGATCCCTAG+GGG - Chr1:77917968-77917987 None:intergenic 50.0%
AGCTCATTATGTCTCGGAGG+CGG + Chr1:77919828-77919847 MsG0180004437.01.T01:intron 50.0%
AGTGCCCTTAAGTGCCCTAA+GGG + Chr1:77919152-77919171 MsG0180004437.01.T01:intron 50.0%
ATAGGTGGCTGAATCCAAGC+TGG + Chr1:77915049-77915068 MsG0180004437.01.T01:intron 50.0%
CAGGCAGAAAGCAGTCTCAA+AGG + Chr1:77916041-77916060 MsG0180004437.01.T01:CDS 50.0%
CTTAATTCGCTGGGTAGCAG+GGG - Chr1:77914961-77914980 None:intergenic 50.0%
CTTGCTAACGAGTGCCCTTA+GGG - Chr1:77919169-77919188 None:intergenic 50.0%
GACAACATGCCCATGTTTGC+TGG + Chr1:77916396-77916415 MsG0180004437.01.T01:intron 50.0%
GAGCTTGCAGAAGCTGCTTA+TGG + Chr1:77918488-77918507 MsG0180004437.01.T01:intron 50.0%
GCTAAACTGCCACCTTGAGT+AGG - Chr1:77913320-77913339 None:intergenic 50.0%
TATGTATGAGCTGAGTGGGC+TGG + Chr1:77917400-77917419 MsG0180004437.01.T01:intron 50.0%
TCTTGCTAACGAGTGCCCTT+AGG - Chr1:77919170-77919189 None:intergenic 50.0%
TGTTTCAAAGCCTGGACAGC+TGG - Chr1:77915391-77915410 None:intergenic 50.0%
TTAAGCAGAACGCATTGCCC+AGG - Chr1:77919892-77919911 None:intergenic 50.0%
TTGGAGTGTGCTCCTACTCA+AGG + Chr1:77913305-77913324 MsG0180004437.01.T01:intron 50.0%
! AGTGCCCTTAGGGCACTTAA+GGG - Chr1:77919159-77919178 None:intergenic 50.0%
! ATGTATGAGCTGAGTGGGCT+GGG + Chr1:77917401-77917420 MsG0180004437.01.T01:intron 50.0%
! CAGACCCTTGTTTCAAAGCC+TGG - Chr1:77915399-77915418 None:intergenic 50.0%
! CTACATTTTGCCAGCTGTCC+AGG + Chr1:77915378-77915397 MsG0180004437.01.T01:intron 50.0%
! GCGGTCTTTTTGCAACAGCA+TGG + Chr1:77917680-77917699 MsG0180004437.01.T01:intron 50.0%
! GGACATCCTTGTTGATGGAG+AGG + Chr1:77915112-77915131 MsG0180004437.01.T01:CDS 50.0%
! TTGAGTAGGAGCACACTCCA+AGG - Chr1:77913306-77913325 None:intergenic 50.0%
!! GAGTACACTCCAGCTTGCTA+TGG + Chr1:77918525-77918544 MsG0180004437.01.T01:intron 50.0%
!! GCTGTCCAGGCTTTGAAACA+AGG + Chr1:77915391-77915410 MsG0180004437.01.T01:intron 50.0%
!! TAACCTGGTGGTGTTGGCTT+GGG + Chr1:77913279-77913298 MsG0180004437.01.T01:intron 50.0%
!! TGCCTGAGCTTTTCAAGCTC+AGG - Chr1:77916027-77916046 None:intergenic 50.0%
!! TTAACCTGGTGGTGTTGGCT+TGG + Chr1:77913278-77913297 MsG0180004437.01.T01:intron 50.0%
AGGATGTCCACCATTCTCGG+AGG - Chr1:77915101-77915120 None:intergenic 55.0%
GAGTGCCCTTAAGTGCCCTA+AGG + Chr1:77919151-77919170 MsG0180004437.01.T01:intron 55.0%
GAGTGTGCTCCTACTCAAGG+TGG + Chr1:77913308-77913327 MsG0180004437.01.T01:intron 55.0%
GCTGCAGACCTTCTCAACAC+CGG - Chr1:77915508-77915527 None:intergenic 55.0%
GGATGTCCACCATTCTCGGA+GGG - Chr1:77915100-77915119 None:intergenic 55.0%
! GAGTGCCCTTAGGGCACTTA+AGG - Chr1:77919160-77919179 None:intergenic 55.0%
!! TTGCAGTGCCGGTGTTGAGA+AGG + Chr1:77915497-77915516 MsG0180004437.01.T01:intron 55.0%
AGCAACAGATCCCTAGGGGC+AGG - Chr1:77917964-77917983 None:intergenic 60.0%
TGCCCCTAGGGATCTGTTGC+TGG + Chr1:77917963-77917982 MsG0180004437.01.T01:intron 60.0%
! TCGGAGGCGGATTCCATGCT+TGG + Chr1:77919841-77919860 MsG0180004437.01.T01:CDS 60.0%
!! GTGGTGTTGGCTTGGGACCT+TGG + Chr1:77913286-77913305 MsG0180004437.01.T01:intron 60.0%
GGTCCCAAGCCAACACCACC+AGG - Chr1:77913285-77913304 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 77913095 77919921 77913095 ID=MsG0180004437.01;Name=MsG0180004437.01
Chr1 mRNA 77913095 77919921 77913095 ID=MsG0180004437.01.T01;Parent=MsG0180004437.01;Name=MsG0180004437.01.T01;_AED=0.60;_eAED=0.67;_QI=0|0.4|0.45|0.81|1|1|11|0|373
Chr1 exon 77913095 77913154 77913095 ID=MsG0180004437.01.T01:exon:14962;Parent=MsG0180004437.01.T01
Chr1 exon 77913838 77913933 77913838 ID=MsG0180004437.01.T01:exon:14963;Parent=MsG0180004437.01.T01
Chr1 exon 77914124 77914225 77914124 ID=MsG0180004437.01.T01:exon:14964;Parent=MsG0180004437.01.T01
Chr1 exon 77914668 77914751 77914668 ID=MsG0180004437.01.T01:exon:14965;Parent=MsG0180004437.01.T01
Chr1 exon 77915053 77915133 77915053 ID=MsG0180004437.01.T01:exon:14966;Parent=MsG0180004437.01.T01
Chr1 exon 77915919 77916196 77915919 ID=MsG0180004437.01.T01:exon:14967;Parent=MsG0180004437.01.T01
Chr1 exon 77916829 77916910 77916829 ID=MsG0180004437.01.T01:exon:14968;Parent=MsG0180004437.01.T01
Chr1 exon 77917521 77917595 77917521 ID=MsG0180004437.01.T01:exon:14969;Parent=MsG0180004437.01.T01
Chr1 exon 77918032 77918101 77918032 ID=MsG0180004437.01.T01:exon:14970;Parent=MsG0180004437.01.T01
Chr1 exon 77919277 77919378 77919277 ID=MsG0180004437.01.T01:exon:14971;Parent=MsG0180004437.01.T01
Chr1 exon 77919830 77919921 77919830 ID=MsG0180004437.01.T01:exon:14972;Parent=MsG0180004437.01.T01
Chr1 CDS 77913095 77913154 77913095 ID=MsG0180004437.01.T01:cds;Parent=MsG0180004437.01.T01
Chr1 CDS 77913838 77913933 77913838 ID=MsG0180004437.01.T01:cds;Parent=MsG0180004437.01.T01
Chr1 CDS 77914124 77914225 77914124 ID=MsG0180004437.01.T01:cds;Parent=MsG0180004437.01.T01
Chr1 CDS 77914668 77914751 77914668 ID=MsG0180004437.01.T01:cds;Parent=MsG0180004437.01.T01
Chr1 CDS 77915053 77915133 77915053 ID=MsG0180004437.01.T01:cds;Parent=MsG0180004437.01.T01
Chr1 CDS 77915919 77916196 77915919 ID=MsG0180004437.01.T01:cds;Parent=MsG0180004437.01.T01
Chr1 CDS 77916829 77916910 77916829 ID=MsG0180004437.01.T01:cds;Parent=MsG0180004437.01.T01
Chr1 CDS 77917521 77917595 77917521 ID=MsG0180004437.01.T01:cds;Parent=MsG0180004437.01.T01
Chr1 CDS 77918032 77918101 77918032 ID=MsG0180004437.01.T01:cds;Parent=MsG0180004437.01.T01
Chr1 CDS 77919277 77919378 77919277 ID=MsG0180004437.01.T01:cds;Parent=MsG0180004437.01.T01
Chr1 CDS 77919830 77919921 77919830 ID=MsG0180004437.01.T01:cds;Parent=MsG0180004437.01.T01
Gene Sequence

>MsG0180004437.01.T01

ATGTCTCATACGAGTTGTGCGCGATTCTTAAGAAAAGGATTAGTTGTGTTGATTTCAACGGTTGTTGCAAATATACTATCTAAAGGTCCAAAACTTAGAGATTATACTAAGGGAGTTGAGAATGATTTGCGCAAAGTGGAGTTGGATTCAATTCAGGATTATATTAAAGAGAGTGATAATCTAGTCTCTCTTCATGACCAAATTCATGATTGTGATAATATCTTGTCACATATGGAAACTCTGCTAAGTGGATTTCAGGCTGAGATTGGTTCCATAAGTTCAGACATTAAAATTCTGCAAGAGAAGTCTATGGATATGGGTTTGAGGCTTAAGAATCGCAAGGTGGCTGAATCCAAGCTGGCTAAGTTTGTGGAAGACATTATTATCCCTCCGAGAATGGTGGACATCCTTGTTGATGGAGAGGTCAATGAGGAATACATGAGAACTCTTGAGATTCTAAGTAAGAAACTGAAGTTTGTAGAAGTGGACACAATGGTTAAAGCTTCAAAAGCTCTAAAAGATGTTCAACCTGAGCTTGAAAAGCTCAGGCAGAAAGCAGTCTCAAAGGTTGTCTACATCAATAACAGTATTAGTATGGAATTTGTTTTCGTTTATAATTTAATGCAGAAATTTTCTTTTATTCTGGGAGCTGTTTATCAAGAAACAAATATCCATATCATCTGTTATCCATCCATCTGCAGGTATGTTGTTAACTTTCTCAAGGAACATGGCAAAGAAGTATATAATGAAGTTCGTGCAGCTTATATTGATACAATGAACAAGGGAAATGAATTTGAAAATTATTTGATGAAGTATCCTTATGCTCCTCTATATGTGCAGGTTCTTAGTGCTCATTCCGAAATAATTGAAATTCTTAGAGAGCCTTTGCTATATACTTTTATTGTGAAAGTATATTTTGTGGTCCTTGGTTTGTATAGGTCATTGATATGCCTTTTGGGTTATACAGGTCCTTTTGGTGTCATGGATGAGCATTTCAGTACAATACTTCCAAACTGCTATGATGCTATAGCTCATTATGTCTCGGAGGCGGATTCCATGCTTGGATTCTTATTTAGACAAGGTCAGCTTCCTGGGCAATGCGTTCTGCTTAAACAAGATTAG

Protein sequence

>MsG0180004437.01.T01

MSHTSCARFLRKGLVVLISTVVANILSKGPKLRDYTKGVENDLRKVELDSIQDYIKESDNLVSLHDQIHDCDNILSHMETLLSGFQAEIGSISSDIKILQEKSMDMGLRLKNRKVAESKLAKFVEDIIIPPRMVDILVDGEVNEEYMRTLEILSKKLKFVEVDTMVKASKALKDVQPELEKLRQKAVSKVVYINNSISMEFVFVYNLMQKFSFILGAVYQETNIHIICYPSICRYVVNFLKEHGKEVYNEVRAAYIDTMNKGNEFENYLMKYPYAPLYVQVLSAHSEIIEILREPLLYTFIVKVYFVVLGLYRSLICLLGYTGPFGVMDEHFSTILPNCYDAIAHYVSEADSMLGFLFRQGQLPGQCVLLKQD*