AlfalfaGEDB | MsG0580025184.01

M. sativa cultivar ZhongmuNo.1 / MsG0580025184.01

KEGG: -
GO: -
PFAM: PF01465

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025184.01.T01	XP_003612320.1	92.702	918	31	4	1	900	1	900	0	1614

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025184.01.T01	Q8S2T0	61.415	749	264	6	163	899	22	757	0	791

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025184.01.T01	G7K011	92.702	918	31	4	1	900	1	900	0.0	1614

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047814.01	MsG0580025184.01	0.851217	1.025028e-60	2.059939e-57
MsG0080048058.01	MsG0580025184.01	0.845015	5.284883e-59	8.688840e-56
MsG0080048383.01	MsG0580025184.01	0.841347	5.019796e-58	7.354700e-55
MsG0080048602.01	MsG0580025184.01	0.831738	1.408162e-55	1.541940e-52
MsG0080048700.01	MsG0580025184.01	0.804489	2.107900e-49	1.088226e-46
MsG0080048765.01	MsG0580025184.01	0.857335	1.750773e-62	4.306165e-59
MsG0080048787.01	MsG0580025184.01	0.810625	1.050325e-50	6.362887e-48
MsG0080048855.01	MsG0580025184.01	0.810316	1.224874e-50	7.359435e-48
MsG0080048856.01	MsG0580025184.01	0.800216	1.599615e-48	7.406326e-46
MsG0080048928.01	MsG0580025184.01	0.818668	1.737935e-52	1.309182e-49

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PPI

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Gene1	Gene2	Type
MsG0280007848.01	MsG0580025184.01	PPI
MsG0580025184.01	MsG0580025644.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025184.01.T01	MTR_5g023770	92.702	918	31	4	1	900	1	900	0.0	1614

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0580025184.01.T01	AT5G66030	61.569	752	264	6	163	902	22	760	792
MsG0580025184.01.T01	AT5G66030	61.415	749	264	6	163	899	22	757	791
MsG0580025184.01.T01	AT5G66030	61.304	721	254	6	163	871	22	729	751
MsG0580025184.01.T01	AT5G66030	59.342	669	247	6	163	819	22	677	678

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Find 238 sgRNAs with CRISPR-Local

Find 775 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAAGGGAAAGCTGGG+AGG	0.732734	5:+14845286	MsG0580025184.01.T01:CDS
AAAATGTCAAGCAACAGATA+AGG	0.544513	5:+14847648	MsG0580025184.01.T01:CDS
AAACGTAACGAGACGGTGAC+TGG	0.482141	5:+14838777	MsG0580025184.01.T01:five_prime_UTR
AAAGTCCGAGCTTCGCAACA+TGG	0.577308	5:+14849488	MsG0580025184.01.T01:CDS
AAATCGTCTCCACAGCCAAC+AGG	0.508271	5:+14849080	MsG0580025184.01.T01:CDS
AAATGAGGCGTTGAAAGCCA+TGG	0.618853	5:+14841486	MsG0580025184.01.T01:CDS
AAATGGATCTGAAGCCCCGG+CGG	0.691255	5:-14838841	None:intergenic
AACAAGAAGTCGATGGCATC+TGG	0.438022	5:+14839915	MsG0580025184.01.T01:CDS
AACAAGAGTTAGAGCGAACA+AGG	0.568118	5:+14841455	MsG0580025184.01.T01:CDS
AACAAGGAAACAAGCAAATG+AGG	0.539583	5:+14841471	MsG0580025184.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATGTCAAGCAACAGATA+AGG	+	Chr5:14847648-14847667	MsG0580025184.01.T01:CDS	30.0%
AAAGGAGATAAGGACAAAAT+GGG	-	Chr5:14849620-14849639	None:intergenic	30.0%
AACACAATGCATTCATTCAA+AGG	-	Chr5:14840811-14840830	None:intergenic	30.0%
AACTTATGTCTTGTATCTTG+TGG	+	Chr5:14842972-14842991	MsG0580025184.01.T01:intron	30.0%
AAGGATAATTCTCATTCCTT+TGG	-	Chr5:14850815-14850834	None:intergenic	30.0%
AAGTTAAGAGAATATCCTGT+CGG	+	Chr5:14845889-14845908	MsG0580025184.01.T01:intron	30.0%
AATGGAATGTCTACCAAATA+AGG	-	Chr5:14843901-14843920	None:intergenic	30.0%
AATTGAATAGAAAGCTGCAA+TGG	-	Chr5:14848571-14848590	None:intergenic	30.0%
AATTGTTCAATGCAAGAGTT+TGG	+	Chr5:14850581-14850600	MsG0580025184.01.T01:three_prime_UTR	30.0%
ACACACAAAAAATAGGTTGT+GGG	-	Chr5:14841776-14841795	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	14838745	14851106	14838745	ID=MsG0580025184.01;Name=MsG0580025184.01
Chr5	mRNA	14838745	14851106	14838745	ID=MsG0580025184.01.T01;Parent=MsG0580025184.01;Name=MsG0580025184.01.T01;_AED=0.43;_eAED=0.44;_QI=226\|0.85\|0.86\|1\|0.76\|0.68\|22\|792\|902
Chr5	exon	14838745	14838933	14838745	ID=MsG0580025184.01.T01:exon:5928;Parent=MsG0580025184.01.T01
Chr5	exon	14839860	14840725	14839860	ID=MsG0580025184.01.T01:exon:5929;Parent=MsG0580025184.01.T01
Chr5	exon	14840847	14840962	14840847	ID=MsG0580025184.01.T01:exon:5930;Parent=MsG0580025184.01.T01
Chr5	exon	14841376	14841545	14841376	ID=MsG0580025184.01.T01:exon:5931;Parent=MsG0580025184.01.T01
Chr5	exon	14842760	14842853	14842760	ID=MsG0580025184.01.T01:exon:5932;Parent=MsG0580025184.01.T01
Chr5	exon	14843214	14843300	14843214	ID=MsG0580025184.01.T01:exon:5933;Parent=MsG0580025184.01.T01
Chr5	exon	14843501	14843581	14843501	ID=MsG0580025184.01.T01:exon:5934;Parent=MsG0580025184.01.T01
Chr5	exon	14844190	14844315	14844190	ID=MsG0580025184.01.T01:exon:5935;Parent=MsG0580025184.01.T01
Chr5	exon	14845284	14845362	14845284	ID=MsG0580025184.01.T01:exon:5936;Parent=MsG0580025184.01.T01
Chr5	exon	14845467	14845546	14845467	ID=MsG0580025184.01.T01:exon:5937;Parent=MsG0580025184.01.T01
Chr5	exon	14847183	14847311	14847183	ID=MsG0580025184.01.T01:exon:5938;Parent=MsG0580025184.01.T01
Chr5	exon	14847394	14847494	14847394	ID=MsG0580025184.01.T01:exon:5939;Parent=MsG0580025184.01.T01
Chr5	exon	14847634	14847767	14847634	ID=MsG0580025184.01.T01:exon:5940;Parent=MsG0580025184.01.T01
Chr5	exon	14847854	14847951	14847854	ID=MsG0580025184.01.T01:exon:5941;Parent=MsG0580025184.01.T01
Chr5	exon	14848057	14848230	14848057	ID=MsG0580025184.01.T01:exon:5942;Parent=MsG0580025184.01.T01
Chr5	exon	14848304	14848331	14848304	ID=MsG0580025184.01.T01:exon:5943;Parent=MsG0580025184.01.T01
Chr5	exon	14848496	14848554	14848496	ID=MsG0580025184.01.T01:exon:5944;Parent=MsG0580025184.01.T01
Chr5	exon	14848891	14848962	14848891	ID=MsG0580025184.01.T01:exon:5945;Parent=MsG0580025184.01.T01
Chr5	exon	14849054	14849101	14849054	ID=MsG0580025184.01.T01:exon:5946;Parent=MsG0580025184.01.T01
Chr5	exon	14849477	14849582	14849477	ID=MsG0580025184.01.T01:exon:5947;Parent=MsG0580025184.01.T01
Chr5	exon	14849698	14849794	14849698	ID=MsG0580025184.01.T01:exon:5948;Parent=MsG0580025184.01.T01
Chr5	exon	14850314	14851106	14850314	ID=MsG0580025184.01.T01:exon:5949;Parent=MsG0580025184.01.T01
Chr5	five_prime_UTR	14838745	14838933	14838745	ID=MsG0580025184.01.T01:five_prime_utr;Parent=MsG0580025184.01.T01
Chr5	five_prime_UTR	14839860	14839896	14839860	ID=MsG0580025184.01.T01:five_prime_utr;Parent=MsG0580025184.01.T01
Chr5	CDS	14839897	14840725	14839897	ID=MsG0580025184.01.T01:cds;Parent=MsG0580025184.01.T01
Chr5	CDS	14840847	14840962	14840847	ID=MsG0580025184.01.T01:cds;Parent=MsG0580025184.01.T01
Chr5	CDS	14841376	14841545	14841376	ID=MsG0580025184.01.T01:cds;Parent=MsG0580025184.01.T01
Chr5	CDS	14842760	14842853	14842760	ID=MsG0580025184.01.T01:cds;Parent=MsG0580025184.01.T01
Chr5	CDS	14843214	14843300	14843214	ID=MsG0580025184.01.T01:cds;Parent=MsG0580025184.01.T01
Chr5	CDS	14843501	14843581	14843501	ID=MsG0580025184.01.T01:cds;Parent=MsG0580025184.01.T01
Chr5	CDS	14844190	14844315	14844190	ID=MsG0580025184.01.T01:cds;Parent=MsG0580025184.01.T01
Chr5	CDS	14845284	14845362	14845284	ID=MsG0580025184.01.T01:cds;Parent=MsG0580025184.01.T01
Chr5	CDS	14845467	14845546	14845467	ID=MsG0580025184.01.T01:cds;Parent=MsG0580025184.01.T01
Chr5	CDS	14847183	14847311	14847183	ID=MsG0580025184.01.T01:cds;Parent=MsG0580025184.01.T01
Chr5	CDS	14847394	14847494	14847394	ID=MsG0580025184.01.T01:cds;Parent=MsG0580025184.01.T01
Chr5	CDS	14847634	14847767	14847634	ID=MsG0580025184.01.T01:cds;Parent=MsG0580025184.01.T01
Chr5	CDS	14847854	14847951	14847854	ID=MsG0580025184.01.T01:cds;Parent=MsG0580025184.01.T01
Chr5	CDS	14848057	14848230	14848057	ID=MsG0580025184.01.T01:cds;Parent=MsG0580025184.01.T01
Chr5	CDS	14848304	14848331	14848304	ID=MsG0580025184.01.T01:cds;Parent=MsG0580025184.01.T01
Chr5	CDS	14848496	14848554	14848496	ID=MsG0580025184.01.T01:cds;Parent=MsG0580025184.01.T01
Chr5	CDS	14848891	14848962	14848891	ID=MsG0580025184.01.T01:cds;Parent=MsG0580025184.01.T01
Chr5	CDS	14849054	14849101	14849054	ID=MsG0580025184.01.T01:cds;Parent=MsG0580025184.01.T01
Chr5	CDS	14849477	14849582	14849477	ID=MsG0580025184.01.T01:cds;Parent=MsG0580025184.01.T01
Chr5	CDS	14849698	14849794	14849698	ID=MsG0580025184.01.T01:cds;Parent=MsG0580025184.01.T01
Chr5	CDS	14850314	14850314	14850314	ID=MsG0580025184.01.T01:cds;Parent=MsG0580025184.01.T01
Chr5	three_prime_UTR	14850315	14851106	14850315	ID=MsG0580025184.01.T01:three_prime_utr;Parent=MsG0580025184.01.T01

Gene Sequence

>MsG0580025184.01.T01

ATGGGGCGTTCCAAAAAAAACAAGAAGTCGATGGCATCTGGTGAAGGTGATACTGGTGGAAAGATGGAGATACGCGCAGAAGATTCCTCTAGACCTGAAAACCATTTGTCTGATTCTGATATGAACCAGCAAAGGAAGGATGAAAGTGATGTAAATATTGTATTGGAAAATGGCTTATCTGATGGAAATGAAGGTCCGGCTGATACTGGTGGAACTGTGGAGATTCGCGCACAAGATTCGTCTAAACCCGAGGAGCATTTGTCAGATGGAAACGAAGGTCCGACTGATACTGGTGGAACGATGGATATTCACGCACAAGATTCATGTAAACCAGAGGAGCATTTGTCAGATGGAAACGAAGTTCTGGCTGATACTGGTGGAACGATGGAGATTCACGCACAAGATTCGTCAAAACCTGAGGAGCATTTGTCTGATTCTGATATGAATCAGCAAAGCAAAGATGGAAGTAATACAAATCCTGTATTAGATAATCGATTCTCTGATGGAAATGAAGGTTTGGCTGATACTCACGATGAGTTTCTGCAAATGGTTGTTGACCTGAAATCTCAGAATGAATTCTTGAAATCCCAGATTGAGGGGTTTAGCAATGTTGAGAGGGAATCCAGTATACAGAAAGAAGTTGGTGGTAAGGAAGACGGGGAATCTGACATTGTGAAAGAACTTCGAGAAAGGATAGAATTATTGAATAAAGAATTTCTGATAGAAAAACAAACCAGAATTGCATCCGAAGAAGCTTTGAAGCACCTTCAAATTGCGTACTCAGATGCAGAAGCAAAGGCCAAAGATCTCTCTGAGCAGCTTGTAGAAGCTCAAAATAAGCTGGAACATGAAATAAAAGAACGTGATGAGAAGTACTCTGAACTTGACGCCAAGTTGAATAGGCTTCACAAAAGGGCAAAACAACGCATTCAAGAAGTTCAAAAGGAAAAAGACGATCTTGAGGCACGATTCTCCGAGTTAAACGAATCTGCTGAGCGAGCATCATCCCAACAGTCAGCATTGCAACAAGAGTTAGAGCGAACAAGGAAACAAGCAAATGAGGCGTTGAAAGCCATGGATGGTGATAGGCAACAATTAAGAAGTGCAAACAACAAACTTCGAGATACCATTGAGGATTTACGGCGTTCATTGCAACCTAAAGAGGAGGCTCTTGAGTCATTGCAATTGTCACTTGCAGAAAAGGAACAGATGCTGGAAGATATGAGAGGATTGCTTCGAACTGCCGAGGAAAAAAGGCAAGCTGCACTAGCTGAGCTCTCTGCTAAACATCAAAAGAATTTGGAGAGTTTGGAGGCTCAACTCAATGATGCTGTATCCGATAGGAGAAAGGCAGCTGAGTCCATTTCTTCACTGCAGGTTCTAGTTGCAGAGAAAGAATCTAGAATTGCAGAGATGGAGGCAGCATCAACTGGGGAAGCAGCACGGCTCAGAGCAGCCATGGAAAGTGTGAAGGGGGAGGTTTCTCACTTAAAACAGGAACATGAAAAAGAAAGGGAAAGCTGGGAGGCTGCATCTCTGGCACTTAAAGCGAAACTCCAAATTGCCGAGAGCAACTGCATACGTCAGCTTGAATCGGAGGTATCTGCACAAGCCAAGATCCTCAGTATGAGAGATGCTGAACTGTTGGCTGCCAAAGAAGAGATCAGCAGTCTTGAGAGGGAATTTTCTTCATACAAGGCTCGTGCACATGCACTTCTTCAAAAGAAGGACGCGGACTTGGTTGCAGCTAAAGACTCTGAACAACTCAAAGCTCTTGAGGAGGCTCTTAAAGAGGCTGAAAATGAAGTGTTATCGATAACAGAAGAAAGGGATAGAGTTCTTCAAGATCTTCAATCTGCCATGGCTAATAACGAGAAAGAACTTGCAGAAAGAGACACTACCCTTGAAAATGTCAAGCAACAGATAAGGAGCTTAGAAATAAAGCTCGATTCAGTTAGTGCTCAACACCTAAAAGAGAAAGAGGAATGGGGACTGAGCCTTCAAAATGTAGAAGAAACATGGAGAATCAGATGCGAGGCAATGAAAGCCGAAAATGAAGCAGCTGCTGCAGAAGATATGCAGAAGGAATTGGAAGAGCTCAAACAGAGATGTAAAAAATTGAAGGACGAACATGCTTCCTTTCATGATCTTGCTGATAGAATGATTGAGGACAAAGACAATGAAATATCCAGACTTTTAGATGAAAATAAGAATCTTCGCCAGTCTCTTCAATCAAGACCACCCGTATGTTTTTTTTTATTAATCTATTTTCTCAATATCATAAAAATCAAGGCATTTTCCGGTCAAAATGATAATTATAACACAGCCTTGCATAAATTGGATTCAACTAATTTAAGTCCCTCAGATGCCGAACATCAAATTCTGATTTTGGCTAGACAACAAGCCCAAAGGGAGGAAGAGCTAGCACAATCGCAGCGTCATATTTTAGCTCTTCAAGAAGAAATTGAGGAGCTTGAACATGAAAATCGTCTCCACAGCCAACAGGAGGCAATGTTAAAGTCCGAGCTTCGCAACATGGAAAGATCAAAGAAAAGGGAAGGTGTAGATATGACGTATTTGAAAAATATTATCTTAAAGCTTCTTGAGACAGGTGAAGTGGAAGTATTGCTACCAGTTATTGGGATGCTGCTTCAGTTTAGTCCAGAGGAGGTAATTTTTTCATCATCTACCTTGCATGTAGGCTCTTGA

Protein sequence

>MsG0580025184.01.T01

MGRSKKNKKSMASGEGDTGGKMEIRAEDSSRPENHLSDSDMNQQRKDESDVNIVLENGLSDGNEGPADTGGTVEIRAQDSSKPEEHLSDGNEGPTDTGGTMDIHAQDSCKPEEHLSDGNEVLADTGGTMEIHAQDSSKPEEHLSDSDMNQQSKDGSNTNPVLDNRFSDGNEGLADTHDEFLQMVVDLKSQNEFLKSQIEGFSNVERESSIQKEVGGKEDGESDIVKELRERIELLNKEFLIEKQTRIASEEALKHLQIAYSDAEAKAKDLSEQLVEAQNKLEHEIKERDEKYSELDAKLNRLHKRAKQRIQEVQKEKDDLEARFSELNESAERASSQQSALQQELERTRKQANEALKAMDGDRQQLRSANNKLRDTIEDLRRSLQPKEEALESLQLSLAEKEQMLEDMRGLLRTAEEKRQAALAELSAKHQKNLESLEAQLNDAVSDRRKAAESISSLQVLVAEKESRIAEMEAASTGEAARLRAAMESVKGEVSHLKQEHEKERESWEAASLALKAKLQIAESNCIRQLESEVSAQAKILSMRDAELLAAKEEISSLEREFSSYKARAHALLQKKDADLVAAKDSEQLKALEEALKEAENEVLSITEERDRVLQDLQSAMANNEKELAERDTTLENVKQQIRSLEIKLDSVSAQHLKEKEEWGLSLQNVEETWRIRCEAMKAENEAAAAEDMQKELEELKQRCKKLKDEHASFHDLADRMIEDKDNEISRLLDENKNLRQSLQSRPPVCFFLLIYFLNIIKIKAFSGQNDNYNTALHKLDSTNLSPSDAEHQILILARQQAQREEELAQSQRHILALQEEIEELEHENRLHSQQEAMLKSELRNMERSKKREGVDMTYLKNIILKLLETGEVEVLLPVIGMLLQFSPEEVIFSSSTLHVGS*