AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180006098.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006098.01.T01 MTR_1g114490 78.857 175 7 1 176 320 207 381 6.10e-80 263
MsG0180006098.01.T01 MTR_1g114490 64.085 142 3 1 1 94 1 142 2.38e-37 142
MsG0180006098.01.T01 MTR_1g023985 74.138 174 15 3 176 320 244 416 8.75e-69 233
MsG0180006098.01.T01 MTR_1g023985 88.136 59 7 0 4 62 3 61 8.68e-26 108
MsG0180006098.01.T01 MTR_1g023910 83.871 62 10 0 1 62 8 69 2.63e-27 108
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006098.01.T01 AT3G26560 62.745 51 19 0 11 61 6 56 1.73e-12 68.6

Find 101 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGAAGGTGATTTCTGTTTC+TGG 0.147409 1:+100149706 MsG0180006098.01.T01:CDS
GTGGTTAGGACAGGGCTTTC+TGG 0.153388 1:+100149856 MsG0180006098.01.T01:CDS
ACAGAGATAGGCACGATAAA+AGG 0.240748 1:+100149370 MsG0180006098.01.T01:CDS
ATGCTAAAGAGGTTGTTAAA+AGG 0.273687 1:+100149668 MsG0180006098.01.T01:CDS
ACAGAGATAGACGCGATAAA+AGG 0.291005 1:+100149328 MsG0180006098.01.T01:CDS
GTATCTTTCACTTGTATCTA+AGG 0.302855 1:+100148838 MsG0180006098.01.T01:CDS
GCCGCTGAAATTCCACAATA+TGG 0.304019 1:+100148800 MsG0180006098.01.T01:CDS
GCACAACAATTGATTGCTTC+GGG 0.306068 1:+100149958 MsG0180006098.01.T01:CDS
TGGTTAGGACAGGGCTTTCT+GGG 0.326416 1:+100149857 MsG0180006098.01.T01:CDS
TCAAGGCGTGGTGGTGGTTC+AGG 0.328786 1:+100149510 MsG0180006098.01.T01:CDS
ATAGAGGCAGAGACAGAGAT+AGG 0.349241 1:+100149400 MsG0180006098.01.T01:CDS
AGCACAACAATTGATTGCTT+CGG 0.351597 1:+100149957 MsG0180006098.01.T01:CDS
CTCCTCCGAGCTCTTCTTCA+AGG 0.373347 1:-100149788 None:intergenic
GGTTGTTAAAAGGGATCAAC+AGG 0.382981 1:+100149678 MsG0180006098.01.T01:CDS
GTGGTTACAGAGATAGAGAT+AGG 0.389220 1:+100149232 MsG0180006098.01.T01:CDS
ACAATATGGATTGAAGAAAC+TGG 0.397433 1:+100148814 MsG0180006098.01.T01:CDS
GCTGAGTTCATCACCGAGTT+AGG 0.401410 1:+100148908 MsG0180006098.01.T01:CDS
GGACAGGGCTTTCTGGGATC+AGG 0.403318 1:+100149863 MsG0180006098.01.T01:CDS
CGAAGGATGGGCCAGTGGTT+AGG 0.409100 1:+100149842 MsG0180006098.01.T01:CDS
CAGAGATAGGCACGATAAAA+GGG 0.415527 1:+100149371 MsG0180006098.01.T01:CDS
CAGAGATAGACGCGATAAAA+GGG 0.431734 1:+100149329 MsG0180006098.01.T01:CDS
CAAGGGAAGAAGATCCTTCC+CGG 0.434030 1:-100149770 None:intergenic
GAGAACCTTGTCGCCGGTGC+CGG 0.436660 1:-100148885 None:intergenic
TGCTAAAGAGGTTGTTAAAA+GGG 0.440220 1:+100149669 MsG0180006098.01.T01:CDS
GCTTTCTGGGATCAGGATTG+TGG 0.445070 1:+100149870 MsG0180006098.01.T01:CDS
GAGATGAGTATGAAGATGAA+AGG 0.446545 1:+100149445 MsG0180006098.01.T01:CDS
GAAGAGATAGACGCAGAGAT+AGG 0.446604 1:+100149259 MsG0180006098.01.T01:CDS
TGGAATTTCAGCGGCAGCCA+TGG 0.451578 1:-100148792 None:intergenic
AGATGAGTATGAAGATGAAA+GGG 0.467802 1:+100149446 MsG0180006098.01.T01:CDS
TGGGATCAGGATTGTGGAGG+AGG 0.470952 1:+100149876 MsG0180006098.01.T01:CDS
TCTTCATACCTGTCCATTGG+TGG 0.472460 1:-100149201 None:intergenic
AATGAGTTCTCCTGAGAGAT+GGG 0.473403 1:+100149933 MsG0180006098.01.T01:CDS
ATGTTTCTCAGATGGCTACT+AGG 0.474096 1:+100149635 MsG0180006098.01.T01:CDS
GAAGAAGAGCTCGGAGGAGG+AGG 0.481493 1:+100149792 MsG0180006098.01.T01:CDS
GATAAAAGAGATTATAGAAG+AGG 0.483470 1:+100149294 MsG0180006098.01.T01:CDS
CCTCATGGAAAGACTCAACT+TGG 0.483505 1:-100149731 None:intergenic
TGTTGTGCTTCCCATCTCTC+AGG 0.484880 1:-100149943 None:intergenic
AGTTTCTTCAATCCATATTG+TGG 0.486582 1:-100148812 None:intergenic
ATAGAGGCAGAGACAGAGAT+AGG 0.486601 1:+100149358 MsG0180006098.01.T01:CDS
TTTGGTTCATGTTTCTCAGA+TGG 0.491509 1:+100149627 MsG0180006098.01.T01:CDS
GAAGATTGCTAATGCTAAAG+AGG 0.492486 1:+100149657 MsG0180006098.01.T01:CDS
TTCGTTTCGGACGAATCCGC+AGG 0.497110 1:+100149816 MsG0180006098.01.T01:CDS
GAATGAGTTCTCCTGAGAGA+TGG 0.505757 1:+100149932 MsG0180006098.01.T01:CDS
AATCCGCAGGACTCGAAGGA+TGG 0.505790 1:+100149829 MsG0180006098.01.T01:CDS
GATGGGCCAGTGGTTAGGAC+AGG 0.514036 1:+100149847 MsG0180006098.01.T01:CDS
ATCCGCAGGACTCGAAGGAT+GGG 0.520699 1:+100149830 MsG0180006098.01.T01:CDS
TTAGAATCTCACACCGGCAC+CGG 0.523669 1:+100148872 MsG0180006098.01.T01:CDS
CAAGTTGAGTCTTTCCATGA+GGG 0.526227 1:+100149732 MsG0180006098.01.T01:CDS
AGAGATTCAAGGCGTGGTGG+TGG 0.527162 1:+100149504 MsG0180006098.01.T01:CDS
AGGGATGTTGATCAACATAC+CGG 0.528223 1:+100149751 MsG0180006098.01.T01:CDS
GAGAATGGTGGTGATGAGAA+AGG 0.532112 1:+100149471 MsG0180006098.01.T01:CDS
CGGAGGAGGAGGATTCGTTT+CGG 0.537448 1:+100149803 MsG0180006098.01.T01:CDS
GATAAAAGGGGAGATGATAG+AGG 0.541014 1:+100149384 MsG0180006098.01.T01:CDS
GTCGTAGAGAAAGAGATTCA+AGG 0.550254 1:+100149493 MsG0180006098.01.T01:CDS
AGATGGAACCACCAATGGAC+AGG 0.550679 1:+100149193 MsG0180006098.01.T01:CDS
TCATCTTCATACCTGTCCAT+TGG 0.552233 1:-100149204 None:intergenic
TCCTCCGAGCTCTTCTTCAA+GGG 0.555645 1:-100149787 None:intergenic
GGAATTTCAGCGGCAGCCAT+GGG 0.555657 1:-100148791 None:intergenic
AAAACAGATGGAACCACCAA+TGG 0.557169 1:+100149188 MsG0180006098.01.T01:CDS
TTCTGGGATCAGGATTGTGG+AGG 0.561534 1:+100149873 MsG0180006098.01.T01:CDS
GACGCTATACTCAAAGAAAA+CGG 0.561906 1:+100148959 MsG0180006098.01.T01:CDS
TCATTCCTCTGACTCGGTCG+AGG 0.561915 1:+100148931 MsG0180006098.01.T01:CDS
GAAGATGAAAGGGAAGAGAA+TGG 0.561956 1:+100149456 MsG0180006098.01.T01:CDS
TCTTCCCTTGAAGAAGAGCT+CGG 0.563077 1:+100149783 MsG0180006098.01.T01:CDS
CTTGAAGAAGAGCTCGGAGG+AGG 0.564495 1:+100149789 MsG0180006098.01.T01:CDS
ATGACACTGTTTCTTCGCGC+AGG 0.568592 1:+100149899 MsG0180006098.01.T01:CDS
ATGTTGATCAACATCCCTCA+TGG 0.568775 1:-100149746 None:intergenic
ACAACAATTGATTGCTTCGG+GGG 0.569709 1:+100149960 MsG0180006098.01.T01:CDS
GAAAGCCCTGTCCTAACCAC+TGG 0.573591 1:-100149853 None:intergenic
GAATTCCTCGACCGAGTCAG+AGG 0.576537 1:-100148936 None:intergenic
GGCCCATCCTTCGAGTCCTG+CGG 0.581171 1:-100149832 None:intergenic
TGGTTACAGAGATAGAGATA+GGG 0.586197 1:+100149233 MsG0180006098.01.T01:CDS
GACGAATCCGCAGGACTCGA+AGG 0.591891 1:+100149825 MsG0180006098.01.T01:CDS
TCACACCGGCACCGGCGACA+AGG 0.592845 1:+100148880 MsG0180006098.01.T01:CDS
GGATCAACAGGTTTATGTGA+AGG 0.595752 1:+100149690 MsG0180006098.01.T01:CDS
CACAACAATTGATTGCTTCG+GGG 0.596516 1:+100149959 MsG0180006098.01.T01:CDS
GAGATAGACGCGATAAAAGG+GGG 0.603283 1:+100149331 MsG0180006098.01.T01:CDS
TAGAGGCAGAGACAGAGATA+GGG 0.604822 1:+100149401 MsG0180006098.01.T01:CDS
CTCAGCGAGAACCTTGTCGC+CGG 0.604870 1:-100148891 None:intergenic
GGAGAACTCATTCTCTTCAA+CGG 0.604981 1:-100149922 None:intergenic
GACAGGTATGAAGATGATGA+TGG 0.607702 1:+100149210 MsG0180006098.01.T01:CDS
GTCAGAGGAATGACCTAACT+CGG 0.609583 1:-100148921 None:intergenic
CCAAGTTGAGTCTTTCCATG+AGG 0.614903 1:+100149731 MsG0180006098.01.T01:CDS
TCCATATTGTGGAATTTCAG+CGG 0.614982 1:-100148801 None:intergenic
GTTAGGTCATTCCTCTGACT+CGG 0.621065 1:+100148925 MsG0180006098.01.T01:CDS
ATGGGCCAGTGGTTAGGACA+GGG 0.622152 1:+100149848 MsG0180006098.01.T01:CDS
GGACTCGAAGGATGGGCCAG+TGG 0.636577 1:+100149837 MsG0180006098.01.T01:CDS
AGAGATAGACGCGATAAAAG+GGG 0.641387 1:+100149330 MsG0180006098.01.T01:CDS
AGAGAAAGAGATTCAAGGCG+TGG 0.643448 1:+100149498 MsG0180006098.01.T01:CDS
AGATGATAGAGATCGCGCTA+AGG 0.646149 1:+100149125 MsG0180006098.01.T01:intron
AGAGATAGGCACGATAAAAG+GGG 0.650664 1:+100149372 MsG0180006098.01.T01:CDS
AGGTATGAAGATGATGATGG+TGG 0.658483 1:+100149213 MsG0180006098.01.T01:CDS
ATAGGGATCGATACGAGAGA+CGG 0.661507 1:+100149418 MsG0180006098.01.T01:CDS
TGTTGATCAACATACCGGGA+AGG 0.668243 1:+100149756 MsG0180006098.01.T01:CDS
GGGATGTTGATCAACATACC+GGG 0.669348 1:+100149752 MsG0180006098.01.T01:CDS
GAAAGAGATTCAAGGCGTGG+TGG 0.675902 1:+100149501 MsG0180006098.01.T01:CDS
TCCCTTGAAGAAGAGCTCGG+AGG 0.691007 1:+100149786 MsG0180006098.01.T01:CDS
GGGATCGATACGAGAGACGG+AGG 0.691273 1:+100149421 MsG0180006098.01.T01:CDS
AGATAGACGCGATAAAAGGG+GGG 0.717408 1:+100149332 MsG0180006098.01.T01:CDS
GATGAAAGGGAAGAGAATGG+TGG 0.732087 1:+100149459 MsG0180006098.01.T01:CDS
ACTGAATTAGAATCTCACAC+CGG 0.776430 1:+100148866 MsG0180006098.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATAAACCATATACAATT+CGG - Chr1:100149540-100149559 None:intergenic 15.0%
!! GAATTGTATATGGTTTATAA+AGG + Chr1:100149539-100149558 MsG0180006098.01.T01:intron 20.0%
!! TTATAAAGGAAGAATTTCTA+GGG + Chr1:100149553-100149572 MsG0180006098.01.T01:intron 20.0%
!! TTTATAAAGGAAGAATTTCT+AGG + Chr1:100149552-100149571 MsG0180006098.01.T01:intron 20.0%
! GATAAAAGAGATTATAGAAG+AGG + Chr1:100149294-100149313 MsG0180006098.01.T01:CDS 25.0%
! TAGAGAAAAACAAAAACAGA+TGG + Chr1:100149176-100149195 MsG0180006098.01.T01:CDS 25.0%
!!! TCTTTCTCTTTTTTAGGTTT+AGG - Chr1:100149046-100149065 None:intergenic 25.0%
!!! TGATTCTCTTTCTCTTTTTT+AGG - Chr1:100149052-100149071 None:intergenic 25.0%
AAGAGTTCGAACAAAGTAAT+CGG - Chr1:100148995-100149014 None:intergenic 30.0%
AGATGAGTATGAAGATGAAA+GGG + Chr1:100149446-100149465 MsG0180006098.01.T01:CDS 30.0%
AGTTTCTTCAATCCATATTG+TGG - Chr1:100148815-100148834 None:intergenic 30.0%
ATGCTAAAGAGGTTGTTAAA+AGG + Chr1:100149668-100149687 MsG0180006098.01.T01:CDS 30.0%
GTATCTTTCACTTGTATCTA+AGG + Chr1:100148838-100148857 MsG0180006098.01.T01:CDS 30.0%
TGCTAAAGAGGTTGTTAAAA+GGG + Chr1:100149669-100149688 MsG0180006098.01.T01:CDS 30.0%
! ACAATATGGATTGAAGAAAC+TGG + Chr1:100148814-100148833 MsG0180006098.01.T01:CDS 30.0%
!!! TTCTCTTTTTTAGGTTTAGG+AGG - Chr1:100149043-100149062 None:intergenic 30.0%
ACTGAATTAGAATCTCACAC+CGG + Chr1:100148866-100148885 MsG0180006098.01.T01:CDS 35.0%
AGCACAACAATTGATTGCTT+CGG + Chr1:100149957-100149976 MsG0180006098.01.T01:CDS 35.0%
CAAAGCCTTGAACTTAGTAT+TGG - Chr1:100149095-100149114 None:intergenic 35.0%
CAATACTAAGTTCAAGGCTT+TGG + Chr1:100149093-100149112 MsG0180006098.01.T01:intron 35.0%
GAAGATTGCTAATGCTAAAG+AGG + Chr1:100149657-100149676 MsG0180006098.01.T01:CDS 35.0%
GACGCTATACTCAAAGAAAA+CGG + Chr1:100148959-100148978 MsG0180006098.01.T01:CDS 35.0%
GAGATGAGTATGAAGATGAA+AGG + Chr1:100149445-100149464 MsG0180006098.01.T01:CDS 35.0%
TCCATATTGTGGAATTTCAG+CGG - Chr1:100148804-100148823 None:intergenic 35.0%
TGGTTACAGAGATAGAGATA+GGG + Chr1:100149233-100149252 MsG0180006098.01.T01:CDS 35.0%
TTAGGTTTAGGAGGAAGAAA+TGG - Chr1:100149034-100149053 None:intergenic 35.0%
! GTTCAGTTGGATGATTTTAG+AGG + Chr1:100149595-100149614 MsG0180006098.01.T01:intron 35.0%
! TTTGGTTCATGTTTCTCAGA+TGG + Chr1:100149627-100149646 MsG0180006098.01.T01:CDS 35.0%
!! GATGATTTTAGAGGAAAGGA+GGG + Chr1:100149604-100149623 MsG0180006098.01.T01:intron 35.0%
!! GTTGGATGATTTTAGAGGAA+AGG + Chr1:100149600-100149619 MsG0180006098.01.T01:intron 35.0%
AAAACAGATGGAACCACCAA+TGG + Chr1:100149188-100149207 MsG0180006098.01.T01:CDS 40.0%
AATGAGTTCTCCTGAGAGAT+GGG + Chr1:100149933-100149952 MsG0180006098.01.T01:CDS 40.0%
ACAACAATTGATTGCTTCGG+GGG + Chr1:100149960-100149979 MsG0180006098.01.T01:CDS 40.0%
ACAGAGATAGACGCGATAAA+AGG + Chr1:100149328-100149347 MsG0180006098.01.T01:CDS 40.0%
ACAGAGATAGGCACGATAAA+AGG + Chr1:100149370-100149389 MsG0180006098.01.T01:CDS 40.0%
AGAGATAGACGCGATAAAAG+GGG + Chr1:100149330-100149349 MsG0180006098.01.T01:CDS 40.0%
AGAGATAGGCACGATAAAAG+GGG + Chr1:100149372-100149391 MsG0180006098.01.T01:CDS 40.0%
AGGGATGTTGATCAACATAC+CGG + Chr1:100149751-100149770 MsG0180006098.01.T01:CDS 40.0%
ATACTGGGTGTTTGTTCAGT+TGG + Chr1:100149582-100149601 MsG0180006098.01.T01:intron 40.0%
ATGTTGATCAACATCCCTCA+TGG - Chr1:100149749-100149768 None:intergenic 40.0%
ATGTTTCTCAGATGGCTACT+AGG + Chr1:100149635-100149654 MsG0180006098.01.T01:CDS 40.0%
CACAACAATTGATTGCTTCG+GGG + Chr1:100149959-100149978 MsG0180006098.01.T01:CDS 40.0%
CACCTCCAATACTAAGTTCA+AGG + Chr1:100149087-100149106 MsG0180006098.01.T01:intron 40.0%
CAGAGATAGACGCGATAAAA+GGG + Chr1:100149329-100149348 MsG0180006098.01.T01:CDS 40.0%
CAGAGATAGGCACGATAAAA+GGG + Chr1:100149371-100149390 MsG0180006098.01.T01:CDS 40.0%
GAAGATGAAAGGGAAGAGAA+TGG + Chr1:100149456-100149475 MsG0180006098.01.T01:CDS 40.0%
GACAGGTATGAAGATGATGA+TGG + Chr1:100149210-100149229 MsG0180006098.01.T01:CDS 40.0%
GATAAAAGGGGAGATGATAG+AGG + Chr1:100149384-100149403 MsG0180006098.01.T01:CDS 40.0%
GCACAACAATTGATTGCTTC+GGG + Chr1:100149958-100149977 MsG0180006098.01.T01:CDS 40.0%
GGAGAACTCATTCTCTTCAA+CGG - Chr1:100149925-100149944 None:intergenic 40.0%
GGATCAACAGGTTTATGTGA+AGG + Chr1:100149690-100149709 MsG0180006098.01.T01:CDS 40.0%
GGTTGTTAAAAGGGATCAAC+AGG + Chr1:100149678-100149697 MsG0180006098.01.T01:CDS 40.0%
GTCGTAGAGAAAGAGATTCA+AGG + Chr1:100149493-100149512 MsG0180006098.01.T01:CDS 40.0%
GTGAAGGTGATTTCTGTTTC+TGG + Chr1:100149706-100149725 MsG0180006098.01.T01:CDS 40.0%
GTGGTTACAGAGATAGAGAT+AGG + Chr1:100149232-100149251 MsG0180006098.01.T01:CDS 40.0%
TCATCTTCATACCTGTCCAT+TGG - Chr1:100149207-100149226 None:intergenic 40.0%
! AGCCTTGAACTTAGTATTGG+AGG - Chr1:100149092-100149111 None:intergenic 40.0%
! CAAGTTGAGTCTTTCCATGA+GGG + Chr1:100149732-100149751 MsG0180006098.01.T01:CDS 40.0%
! CTTGAACTTAGTATTGGAGG+TGG - Chr1:100149089-100149108 None:intergenic 40.0%
!! AGGAAGAATTTCTAGGGTGA+TGG + Chr1:100149559-100149578 MsG0180006098.01.T01:intron 40.0%
!! AGGTATGAAGATGATGATGG+TGG + Chr1:100149213-100149232 MsG0180006098.01.T01:CDS 40.0%
!! ATTTCTAGGGTGATGGATAC+TGG + Chr1:100149566-100149585 MsG0180006098.01.T01:intron 40.0%
!! GGATGATTTTAGAGGAAAGG+AGG + Chr1:100149603-100149622 MsG0180006098.01.T01:intron 40.0%
!! TTTCTAGGGTGATGGATACT+GGG + Chr1:100149567-100149586 MsG0180006098.01.T01:intron 40.0%
!! TTTTAGAGGAAAGGAGGGTT+TGG + Chr1:100149609-100149628 MsG0180006098.01.T01:intron 40.0%
AGAGAAAGAGATTCAAGGCG+TGG + Chr1:100149498-100149517 MsG0180006098.01.T01:CDS 45.0%
AGATAGACGCGATAAAAGGG+GGG + Chr1:100149332-100149351 MsG0180006098.01.T01:CDS 45.0%
AGATGATAGAGATCGCGCTA+AGG + Chr1:100149125-100149144 MsG0180006098.01.T01:intron 45.0%
ATAGAGGCAGAGACAGAGAT+AGG + Chr1:100149358-100149377 MsG0180006098.01.T01:CDS 45.0%
ATAGGGATCGATACGAGAGA+CGG + Chr1:100149418-100149437 MsG0180006098.01.T01:CDS 45.0%
CAGGTGAGCCGAATTGTATA+TGG + Chr1:100149529-100149548 MsG0180006098.01.T01:intron 45.0%
CCTCATGGAAAGACTCAACT+TGG - Chr1:100149734-100149753 None:intergenic 45.0%
GAAGAGATAGACGCAGAGAT+AGG + Chr1:100149259-100149278 MsG0180006098.01.T01:CDS 45.0%
GAATGAGTTCTCCTGAGAGA+TGG + Chr1:100149932-100149951 MsG0180006098.01.T01:CDS 45.0%
GAGATAGACGCGATAAAAGG+GGG + Chr1:100149331-100149350 MsG0180006098.01.T01:CDS 45.0%
GATAAAAGGGGGGATGATAG+AGG + Chr1:100149342-100149361 MsG0180006098.01.T01:CDS 45.0%
GATGAAAGGGAAGAGAATGG+TGG + Chr1:100149459-100149478 MsG0180006098.01.T01:CDS 45.0%
GCCGCTGAAATTCCACAATA+TGG + Chr1:100148800-100148819 MsG0180006098.01.T01:CDS 45.0%
GGGATGTTGATCAACATACC+GGG + Chr1:100149752-100149771 MsG0180006098.01.T01:CDS 45.0%
GTCAGAGGAATGACCTAACT+CGG - Chr1:100148924-100148943 None:intergenic 45.0%
GTTAGGTCATTCCTCTGACT+CGG + Chr1:100148925-100148944 MsG0180006098.01.T01:CDS 45.0%
TAGAGGCAGAGACAGAGATA+GGG + Chr1:100149359-100149378 MsG0180006098.01.T01:CDS 45.0%
TCTTCATACCTGTCCATTGG+TGG - Chr1:100149204-100149223 None:intergenic 45.0%
TCTTCCCTTGAAGAAGAGCT+CGG + Chr1:100149783-100149802 MsG0180006098.01.T01:CDS 45.0%
TGTTGATCAACATACCGGGA+AGG + Chr1:100149756-100149775 MsG0180006098.01.T01:CDS 45.0%
TTTAGGAGGAAGAAATGGCG+TGG - Chr1:100149029-100149048 None:intergenic 45.0%
! CCAAGTTGAGTCTTTCCATG+AGG + Chr1:100149731-100149750 MsG0180006098.01.T01:CDS 45.0%
! GAGAATGGTGGTGATGAGAA+AGG + Chr1:100149471-100149490 MsG0180006098.01.T01:CDS 45.0%
AGATGGAACCACCAATGGAC+AGG + Chr1:100149193-100149212 MsG0180006098.01.T01:CDS 50.0%
CAAGGGAAGAAGATCCTTCC+CGG - Chr1:100149773-100149792 None:intergenic 50.0%
GAAAGAGATTCAAGGCGTGG+TGG + Chr1:100149501-100149520 MsG0180006098.01.T01:CDS 50.0%
GCTGAGTTCATCACCGAGTT+AGG + Chr1:100148908-100148927 MsG0180006098.01.T01:CDS 50.0%
TCCTCCGAGCTCTTCTTCAA+GGG - Chr1:100149790-100149809 None:intergenic 50.0%
TGGTTAGGACAGGGCTTTCT+GGG + Chr1:100149857-100149876 MsG0180006098.01.T01:CDS 50.0%
TGTTGTGCTTCCCATCTCTC+AGG - Chr1:100149946-100149965 None:intergenic 50.0%
TTAGAATCTCACACCGGCAC+CGG + Chr1:100148872-100148891 MsG0180006098.01.T01:CDS 50.0%
! ATGACACTGTTTCTTCGCGC+AGG + Chr1:100149899-100149918 MsG0180006098.01.T01:CDS 50.0%
!! GCTTTCTGGGATCAGGATTG+TGG + Chr1:100149870-100149889 MsG0180006098.01.T01:CDS 50.0%
!! TTCTGGGATCAGGATTGTGG+AGG + Chr1:100149873-100149892 MsG0180006098.01.T01:CDS 50.0%
AATCCGCAGGACTCGAAGGA+TGG + Chr1:100149829-100149848 MsG0180006098.01.T01:CDS 55.0%
AGAGATTCAAGGCGTGGTGG+TGG + Chr1:100149504-100149523 MsG0180006098.01.T01:CDS 55.0%
ATCCGCAGGACTCGAAGGAT+GGG + Chr1:100149830-100149849 MsG0180006098.01.T01:CDS 55.0%
ATGGGCCAGTGGTTAGGACA+GGG + Chr1:100149848-100149867 MsG0180006098.01.T01:CDS 55.0%
CGGAGGAGGAGGATTCGTTT+CGG + Chr1:100149803-100149822 MsG0180006098.01.T01:CDS 55.0%
CTCCTCCGAGCTCTTCTTCA+AGG - Chr1:100149791-100149810 None:intergenic 55.0%
CTTGAAGAAGAGCTCGGAGG+AGG + Chr1:100149789-100149808 MsG0180006098.01.T01:CDS 55.0%
GAAAGCCCTGTCCTAACCAC+TGG - Chr1:100149856-100149875 None:intergenic 55.0%
GAATTCCTCGACCGAGTCAG+AGG - Chr1:100148939-100148958 None:intergenic 55.0%
GTGGTTAGGACAGGGCTTTC+TGG + Chr1:100149856-100149875 MsG0180006098.01.T01:CDS 55.0%
TCCCTTGAAGAAGAGCTCGG+AGG + Chr1:100149786-100149805 MsG0180006098.01.T01:CDS 55.0%
TGGGATCAGGATTGTGGAGG+AGG + Chr1:100149876-100149895 MsG0180006098.01.T01:CDS 55.0%
TTCGTTTCGGACGAATCCGC+AGG + Chr1:100149816-100149835 MsG0180006098.01.T01:CDS 55.0%
!! TCATTCCTCTGACTCGGTCG+AGG + Chr1:100148931-100148950 MsG0180006098.01.T01:CDS 55.0%
CGAAGGATGGGCCAGTGGTT+AGG + Chr1:100149842-100149861 MsG0180006098.01.T01:CDS 60.0%
CTCAGCGAGAACCTTGTCGC+CGG - Chr1:100148894-100148913 None:intergenic 60.0%
GAAGAAGAGCTCGGAGGAGG+AGG + Chr1:100149792-100149811 MsG0180006098.01.T01:CDS 60.0%
GACGAATCCGCAGGACTCGA+AGG + Chr1:100149825-100149844 MsG0180006098.01.T01:CDS 60.0%
GATGGGCCAGTGGTTAGGAC+AGG + Chr1:100149847-100149866 MsG0180006098.01.T01:CDS 60.0%
GGGATCGATACGAGAGACGG+AGG + Chr1:100149421-100149440 MsG0180006098.01.T01:CDS 60.0%
!! GGACAGGGCTTTCTGGGATC+AGG + Chr1:100149863-100149882 MsG0180006098.01.T01:CDS 60.0%
!! TCAAGGCGTGGTGGTGGTTC+AGG + Chr1:100149510-100149529 MsG0180006098.01.T01:CDS 60.0%
GAGAACCTTGTCGCCGGTGC+CGG - Chr1:100148888-100148907 None:intergenic 65.0%
GGACTCGAAGGATGGGCCAG+TGG + Chr1:100149837-100149856 MsG0180006098.01.T01:CDS 65.0%
GGCCCATCCTTCGAGTCCTG+CGG - Chr1:100149835-100149854 None:intergenic 65.0%
!! TCACACCGGCACCGGCGACA+AGG + Chr1:100148880-100148899 MsG0180006098.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 100148794 100149987 100148794 ID=MsG0180006098.01;Name=MsG0180006098.01
Chr1 mRNA 100148794 100149987 100148794 ID=MsG0180006098.01.T01;Parent=MsG0180006098.01;Name=MsG0180006098.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0|0|1|1|1|3|0|320
Chr1 exon 100148794 100148980 100148794 ID=MsG0180006098.01.T01:exon:38083;Parent=MsG0180006098.01.T01
Chr1 exon 100149127 100149531 100149127 ID=MsG0180006098.01.T01:exon:38084;Parent=MsG0180006098.01.T01
Chr1 exon 100149617 100149987 100149617 ID=MsG0180006098.01.T01:exon:38085;Parent=MsG0180006098.01.T01
Chr1 CDS 100148794 100148980 100148794 ID=MsG0180006098.01.T01:cds;Parent=MsG0180006098.01.T01
Chr1 CDS 100149127 100149531 100149127 ID=MsG0180006098.01.T01:cds;Parent=MsG0180006098.01.T01
Chr1 CDS 100149617 100149987 100149617 ID=MsG0180006098.01.T01:cds;Parent=MsG0180006098.01.T01
Gene Sequence

>MsG0180006098.01.T01

ATGGCTGCCGCTGAAATTCCACAATATGGATTGAAGAAACTGGAGTATCTTTCACTTGTATCTAAGGTATGCACTGAATTAGAATCTCACACCGGCACCGGCGACAAGGTTCTCGCTGAGTTCATCACCGAGTTAGGTCATTCCTCTGACTCGGTCGAGGAATTCGACGCTATACTCAAAGAAAACGATGATAGAGATCGCGCTAAGGAACTTCGTGAAGAGATCGAAATCGAAGCTAGAGAAAAACAAAAACAGATGGAACCACCAATGGACAGGTATGAAGATGATGATGGTGGTTACAGAGATAGAGATAGGGATAGAAGAGATAGACGCAGAGATAGGTATGAAGAAGATGATAAAAGAGATTATAGAAGAGGAAATGATAGAGACAGAGATAGACGCGATAAAAGGGGGGATGATAGAGGCAGAGACAGAGATAGGCACGATAAAAGGGGAGATGATAGAGGCAGAGACAGAGATAGGGATCGATACGAGAGACGGAGGAGAGATGAGTATGAAGATGAAAGGGAAGAGAATGGTGGTGATGAGAAAGGTCGTAGAGAAAGAGATTCAAGGCGTGGTGGTGGTTCAGGAAAGGAGGGTTTGGTTCATGTTTCTCAGATGGCTACTAGGAAGATTGCTAATGCTAAAGAGGTTGTTAAAAGGGATCAACAGGTTTATGTGAAGGTGATTTCTGTTTCTGGTTCCAAGTTGAGTCTTTCCATGAGGGATGTTGATCAACATACCGGGAAGGATCTTCTTCCCTTGAAGAAGAGCTCGGAGGAGGAGGATTCGTTTCGGACGAATCCGCAGGACTCGAAGGATGGGCCAGTGGTTAGGACAGGGCTTTCTGGGATCAGGATTGTGGAGGAGGATGACACTGTTTCTTCGCGCAGGCCGTTGAAGAGAATGAGTTCTCCTGAGAGATGGGAAGCACAACAATTGATTGCTTCGGGGGTTTGA

Protein sequence

>MsG0180006098.01.T01

MAAAEIPQYGLKKLEYLSLVSKVCTELESHTGTGDKVLAEFITELGHSSDSVEEFDAILKENDDRDRAKELREEIEIEAREKQKQMEPPMDRYEDDDGGYRDRDRDRRDRRRDRYEEDDKRDYRRGNDRDRDRRDKRGDDRGRDRDRHDKRGDDRGRDRDRDRYERRRRDEYEDEREENGGDEKGRRERDSRRGGGSGKEGLVHVSQMATRKIANAKEVVKRDQQVYVKVISVSGSKLSLSMRDVDQHTGKDLLPLKKSSEEEDSFRTNPQDSKDGPVVRTGLSGIRIVEEDDTVSSRRPLKRMSSPERWEAQQLIASGV*