Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580024599.01.T01 | RHN38708.1 | 63.81 | 105 | 38 | 0 | 5 | 109 | 120 | 224 | 2.82E-42 | 148 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580024599.01.T01 | A0A396GDP7 | 63.810 | 105 | 38 | 0 | 5 | 109 | 120 | 224 | 1.35e-42 | 148 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0180000942.01 | MsG0580024599.01 | 0.812955 | 3.267184e-51 | 2.105700e-48 |
MsG0180002891.01 | MsG0580024599.01 | 0.840853 | 6.769552e-58 | 9.768109e-55 |
MsG0280011110.01 | MsG0580024599.01 | -0.811556 | 6.598109e-51 | 4.097101e-48 |
MsG0480019065.01 | MsG0580024599.01 | 0.811138 | 8.133205e-51 | 4.994861e-48 |
MsG0480020229.01 | MsG0580024599.01 | 0.813782 | 2.149930e-51 | 1.417139e-48 |
MsG0480020433.01 | MsG0580024599.01 | 0.809299 | 2.026976e-50 | 1.185715e-47 |
MsG0480021207.01 | MsG0580024599.01 | 0.800196 | 1.614607e-48 | 7.471761e-46 |
MsG0580024599.01 | MsG0580026031.01 | 0.810944 | 8.960391e-51 | 5.475165e-48 |
MsG0580024599.01 | MsG0580026498.01 | 0.809057 | 2.284095e-50 | 1.327468e-47 |
MsG0580024599.01 | MsG0580028177.01 | 0.847475 | 1.129606e-59 | 2.010239e-56 |
MsG0580024599.01 | MsG0580028179.01 | 0.847100 | 1.431621e-59 | 2.517505e-56 |
MsG0580024599.01 | MsG0680031996.01 | 0.834919 | 2.269160e-56 | 2.731975e-53 |
MsG0580024599.01 | MsG0680032002.01 | 0.815699 | 8.084923e-52 | 5.614356e-49 |
MsG0580024599.01 | MsG0680032003.01 | 0.806620 | 7.528444e-50 | 4.105111e-47 |
MsG0580024599.01 | MsG0680032254.01 | 0.815517 | 8.878547e-52 | 6.134841e-49 |
MsG0580024599.01 | MsG0680032274.01 | 0.805660 | 1.199375e-49 | 6.381661e-47 |
MsG0580024599.01 | MsG0680032310.01 | 0.829373 | 5.339304e-55 | 5.454828e-52 |
MsG0580024599.01 | MsG0780036509.01 | 0.802302 | 5.984879e-49 | 2.921674e-46 |
MsG0580024599.01 | MsG0780039256.01 | 0.807512 | 4.875694e-50 | 2.720979e-47 |
MsG0580024599.01 | MsG0880042000.01 | 0.804894 | 1.735297e-49 | 9.054082e-47 |
MsG0580024599.01 | MsG0880042084.01 | 0.812664 | 3.784044e-51 | 2.420308e-48 |
MsG0580024599.01 | MsG0880042416.01 | 0.815467 | 9.109455e-52 | 6.285825e-49 |
MsG0580024599.01 | MsG0880045624.01 | 0.802744 | 4.851217e-49 | 2.395027e-46 |
MsG0380016527.01 | MsG0580024599.01 | 0.801971 | 7.000864e-49 | 3.388602e-46 |
MsG0280009435.01 | MsG0580024599.01 | 0.811876 | 5.621184e-51 | 3.520068e-48 |
MsG0280009436.01 | MsG0580024599.01 | 0.804251 | 2.362635e-49 | 1.212276e-46 |
MsG0280009901.01 | MsG0580024599.01 | 0.803204 | 3.898182e-49 | 1.947151e-46 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580024599.01.T01 | MTR_3g112330 | 64.706 | 102 | 36 | 0 | 1 | 102 | 37 | 138 | 1.21e-44 | 143 |
MsG0580024599.01.T01 | MTR_3g070320 | 71.111 | 90 | 26 | 0 | 10 | 99 | 1 | 90 | 1.97e-44 | 142 |
MsG0580024599.01.T01 | MTR_6g072515 | 59.000 | 100 | 41 | 0 | 10 | 109 | 1 | 100 | 6.34e-40 | 130 |
MsG0580024599.01.T01 | MTR_2g090750 | 62.500 | 88 | 33 | 0 | 1 | 88 | 599 | 686 | 6.03e-33 | 120 |
MsG0580024599.01.T01 | MTR_5g007390 | 46.296 | 108 | 57 | 1 | 1 | 107 | 11 | 118 | 6.81e-32 | 108 |
MsG0580024599.01.T01 | MTR_5g048020 | 54.945 | 91 | 41 | 0 | 1 | 91 | 83 | 173 | 3.57e-30 | 106 |
MsG0580024599.01.T01 | MTR_5g027710 | 49.000 | 100 | 51 | 0 | 10 | 109 | 1 | 100 | 6.53e-30 | 103 |
MsG0580024599.01.T01 | MTR_7g089465 | 56.790 | 81 | 35 | 0 | 18 | 98 | 21 | 101 | 3.28e-29 | 101 |
MsG0580024599.01.T01 | MTR_4g093760 | 55.294 | 85 | 38 | 0 | 10 | 94 | 1 | 85 | 5.07e-27 | 98.6 |
MsG0580024599.01.T01 | MTR_1g015073 | 46.875 | 96 | 51 | 0 | 1 | 96 | 23 | 118 | 4.38e-23 | 87.8 |
MsG0580024599.01.T01 | MTR_8g077330 | 47.561 | 82 | 43 | 0 | 1 | 82 | 57 | 138 | 9.23e-22 | 85.1 |
MsG0580024599.01.T01 | MTR_5g027610 | 42.424 | 99 | 57 | 0 | 10 | 108 | 1 | 99 | 1.43e-21 | 83.2 |
MsG0580024599.01.T01 | MTR_4g459430 | 48.235 | 85 | 44 | 0 | 1 | 85 | 251 | 335 | 5.32e-21 | 85.9 |
MsG0580024599.01.T01 | MTR_4g059530 | 48.235 | 85 | 44 | 0 | 1 | 85 | 251 | 335 | 5.32e-21 | 85.9 |
MsG0580024599.01.T01 | MTR_2g090630 | 74.468 | 47 | 12 | 0 | 19 | 65 | 1 | 47 | 2.38e-20 | 79.0 |
MsG0580024599.01.T01 | MTR_5g027090 | 80.952 | 42 | 8 | 0 | 68 | 109 | 14 | 55 | 7.79e-20 | 76.3 |
MsG0580024599.01.T01 | MTR_7g106620 | 54.545 | 66 | 30 | 0 | 28 | 93 | 3 | 68 | 3.51e-18 | 74.3 |
MsG0580024599.01.T01 | MTR_3g077360 | 50.877 | 57 | 28 | 0 | 53 | 109 | 1 | 57 | 1.20e-15 | 65.9 |
MsG0580024599.01.T01 | MTR_1g100385 | 43.210 | 81 | 38 | 1 | 1 | 81 | 294 | 366 | 3.78e-15 | 70.1 |
MsG0580024599.01.T01 | MTR_7g083290 | 56.604 | 53 | 23 | 0 | 57 | 109 | 142 | 194 | 2.02e-13 | 63.5 |
MsG0580024599.01.T01 | MTR_8g074600 | 49.091 | 55 | 28 | 0 | 36 | 90 | 20 | 74 | 2.72e-13 | 61.6 |
MsG0580024599.01.T01 | MTR_5g099210 | 51.923 | 52 | 25 | 0 | 58 | 109 | 18 | 69 | 3.16e-13 | 62.0 |
MsG0580024599.01.T01 | MTR_4g037265 | 50.000 | 58 | 29 | 0 | 23 | 80 | 1 | 58 | 4.35e-13 | 62.4 |
MsG0580024599.01.T01 | MTR_5g036810 | 49.153 | 59 | 30 | 0 | 1 | 59 | 237 | 295 | 5.22e-13 | 63.5 |
MsG0580024599.01.T01 | MTR_8g446700 | 52.174 | 46 | 22 | 0 | 62 | 107 | 1 | 46 | 8.73e-13 | 59.7 |
MsG0580024599.01.T01 | MTR_3g021160 | 51.064 | 47 | 23 | 0 | 63 | 109 | 3 | 49 | 1.96e-11 | 56.2 |
MsG0580024599.01.T01 | MTR_3g108670 | 43.750 | 80 | 44 | 1 | 29 | 107 | 231 | 310 | 2.44e-11 | 58.9 |
MsG0580024599.01.T01 | MTR_1g052925 | 66.667 | 39 | 13 | 0 | 45 | 83 | 1 | 39 | 4.33e-11 | 54.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 46 sgRNAs with CRISPR-Local
Find 47 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCGATATGGCTAGAAATATT+TGG | 0.242600 | 5:+6750918 | None:intergenic |
TCCCAATGGATAAACAAATT+TGG | 0.244061 | 5:-6750983 | None:intergenic |
AAATATTTGGAGGAGTTTAA+TGG | 0.268440 | 5:+6750931 | MsG0580024599.01.T01:CDS |
AAGTGGCGATTTGGGTAATT+TGG | 0.301231 | 5:+6751065 | MsG0580024599.01.T01:CDS |
TGATTTGGCAAGTGGCGATT+TGG | 0.313370 | 5:+6751056 | MsG0580024599.01.T01:CDS |
GTTGTCTTGGAGGTGGGTGT+TGG | 0.316052 | 5:+6751159 | MsG0580024599.01.T01:CDS |
TCCAAATTTGTTTATCCATT+GGG | 0.331325 | 5:+6750982 | MsG0580024599.01.T01:CDS |
GGAAGGGATTGCGGTTGATT+TGG | 0.335809 | 5:+6751041 | MsG0580024599.01.T01:CDS |
AATATTTGGAGGAGTTTAAT+GGG | 0.336070 | 5:+6750932 | MsG0580024599.01.T01:CDS |
TGAGATGGTGGAGGAGGTTA+AGG | 0.340749 | 5:+6751135 | MsG0580024599.01.T01:CDS |
TTGTCTTGGAGGTGGGTGTT+GGG | 0.344132 | 5:+6751160 | MsG0580024599.01.T01:CDS |
GTTTATCCATTGGGAGTGTT+GGG | 0.364864 | 5:+6750991 | MsG0580024599.01.T01:CDS |
GTTCTTTAAATAAGAAAATT+CGG | 0.376835 | 5:+6751020 | MsG0580024599.01.T01:CDS |
GATTTGGCAAGTGGCGATTT+GGG | 0.380918 | 5:+6751057 | MsG0580024599.01.T01:CDS |
CTCCAAATTTGTTTATCCAT+TGG | 0.393697 | 5:+6750981 | MsG0580024599.01.T01:CDS |
TGTTTATCCATTGGGAGTGT+TGG | 0.416528 | 5:+6750990 | MsG0580024599.01.T01:CDS |
TAAGGTGTTGTCTTGGAGGT+GGG | 0.425154 | 5:+6751153 | MsG0580024599.01.T01:CDS |
TTAAGGTGTTGTCTTGGAGG+TGG | 0.426272 | 5:+6751152 | MsG0580024599.01.T01:CDS |
AGGTTAAGGTGTTGTCTTGG+AGG | 0.428623 | 5:+6751149 | MsG0580024599.01.T01:CDS |
AGGAGGTTAAGGTGTTGTCT+TGG | 0.443903 | 5:+6751146 | MsG0580024599.01.T01:CDS |
ATCCATTGGGAGTGTTGGGA+GGG | 0.463309 | 5:+6750995 | MsG0580024599.01.T01:CDS |
CATTGGGAGTGTTGGGAGGG+AGG | 0.473373 | 5:+6750998 | MsG0580024599.01.T01:CDS |
CAATAATGAGCTTGCTAGGT+GGG | 0.480034 | 5:+6751111 | MsG0580024599.01.T01:CDS |
GTGGGATGAGATGGTGGAGG+AGG | 0.480102 | 5:+6751129 | MsG0580024599.01.T01:CDS |
TATCCATTGGGAGTGTTGGG+AGG | 0.491156 | 5:+6750994 | MsG0580024599.01.T01:CDS |
GGCGATTTGGGTAATTTGGA+AGG | 0.516684 | 5:+6751069 | MsG0580024599.01.T01:CDS |
TTTAAATAAGAAAATTCGGA+AGG | 0.517798 | 5:+6751024 | MsG0580024599.01.T01:CDS |
CACTCGTAAAACATACAAGC+CGG | 0.518524 | 5:-6751196 | None:intergenic |
CGAGTGGAGTTGGTGTCCGC+GGG | 0.527420 | 5:+6751213 | MsG0580024599.01.T01:CDS |
CTCCCTCCCAACACTCCCAA+TGG | 0.538796 | 5:-6750997 | None:intergenic |
AGAAAATTCGGAAGGGATTG+CGG | 0.543830 | 5:+6751032 | MsG0580024599.01.T01:CDS |
CAATGGATAAACAAATTTGG+AGG | 0.558332 | 5:-6750980 | None:intergenic |
ACGAGTGGAGTTGGTGTCCG+CGG | 0.558716 | 5:+6751212 | MsG0580024599.01.T01:CDS |
TTTGGAGGAGTTTAATGGGG+TGG | 0.562777 | 5:+6750936 | MsG0580024599.01.T01:CDS |
ATTGCGGTTGATTTGGCAAG+TGG | 0.568446 | 5:+6751048 | MsG0580024599.01.T01:CDS |
ATATTTGGAGGAGTTTAATG+GGG | 0.575031 | 5:+6750933 | MsG0580024599.01.T01:CDS |
TTAAATAAGAAAATTCGGAA+GGG | 0.578307 | 5:+6751025 | MsG0580024599.01.T01:CDS |
TGCTAGGTGGGATGAGATGG+TGG | 0.580942 | 5:+6751123 | MsG0580024599.01.T01:CDS |
GCTTGCTAGGTGGGATGAGA+TGG | 0.593043 | 5:+6751120 | MsG0580024599.01.T01:CDS |
GTTGGGTAGATTTAATAACC+CGG | 0.593410 | 5:+6751177 | MsG0580024599.01.T01:CDS |
GTAATTTGGAAGGCTAGAAA+CGG | 0.611611 | 5:+6751079 | MsG0580024599.01.T01:CDS |
ACTCGTAAAACATACAAGCC+GGG | 0.614655 | 5:-6751195 | None:intergenic |
TAGGTGGGATGAGATGGTGG+AGG | 0.646079 | 5:+6751126 | MsG0580024599.01.T01:CDS |
ATATGGCTAGAAATATTTGG+AGG | 0.651693 | 5:+6750921 | None:intergenic |
TCAATAATGAGCTTGCTAGG+TGG | 0.675953 | 5:+6751110 | MsG0580024599.01.T01:CDS |
TATCTTATCAGACACTCCCG+CGG | 0.717026 | 5:-6751229 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GTTCTTTAAATAAGAAAATT+CGG | + | Chr5:6751020-6751039 | MsG0580024599.01.T01:CDS | 15.0% |
!! | TTAAATAAGAAAATTCGGAA+GGG | + | Chr5:6751025-6751044 | MsG0580024599.01.T01:CDS | 20.0% |
!! | TTTAAATAAGAAAATTCGGA+AGG | + | Chr5:6751024-6751043 | MsG0580024599.01.T01:CDS | 20.0% |
! | AAATATTTGGAGGAGTTTAA+TGG | + | Chr5:6750931-6750950 | MsG0580024599.01.T01:CDS | 25.0% |
! | AATATTTGGAGGAGTTTAAT+GGG | + | Chr5:6750932-6750951 | MsG0580024599.01.T01:CDS | 25.0% |
!! | TCCAAATTTGTTTATCCATT+GGG | + | Chr5:6750982-6751001 | MsG0580024599.01.T01:CDS | 25.0% |
ATATTTGGAGGAGTTTAATG+GGG | + | Chr5:6750933-6750952 | MsG0580024599.01.T01:CDS | 30.0% | |
CAATGGATAAACAAATTTGG+AGG | - | Chr5:6750983-6751002 | None:intergenic | 30.0% | |
TCCCAATGGATAAACAAATT+TGG | - | Chr5:6750986-6751005 | None:intergenic | 30.0% | |
! | CTCCAAATTTGTTTATCCAT+TGG | + | Chr5:6750981-6751000 | MsG0580024599.01.T01:CDS | 30.0% |
!! | TTTTCAATAATGAGCTTGCT+AGG | + | Chr5:6751107-6751126 | MsG0580024599.01.T01:CDS | 30.0% |
GTAATTTGGAAGGCTAGAAA+CGG | + | Chr5:6751079-6751098 | MsG0580024599.01.T01:CDS | 35.0% | |
GTTGGGTAGATTTAATAACC+CGG | + | Chr5:6751177-6751196 | MsG0580024599.01.T01:CDS | 35.0% | |
ACTCGTAAAACATACAAGCC+GGG | - | Chr5:6751198-6751217 | None:intergenic | 40.0% | |
AGAAAATTCGGAAGGGATTG+CGG | + | Chr5:6751032-6751051 | MsG0580024599.01.T01:CDS | 40.0% | |
CACTCGTAAAACATACAAGC+CGG | - | Chr5:6751199-6751218 | None:intergenic | 40.0% | |
! | AAGTGGCGATTTGGGTAATT+TGG | + | Chr5:6751065-6751084 | MsG0580024599.01.T01:CDS | 40.0% |
! | GTATGTTTTACGAGTGGAGT+TGG | + | Chr5:6751203-6751222 | MsG0580024599.01.T01:CDS | 40.0% |
! | TGTTTATCCATTGGGAGTGT+TGG | + | Chr5:6750990-6751009 | MsG0580024599.01.T01:CDS | 40.0% |
!! | CAATAATGAGCTTGCTAGGT+GGG | + | Chr5:6751111-6751130 | MsG0580024599.01.T01:CDS | 40.0% |
!! | GTTTATCCATTGGGAGTGTT+GGG | + | Chr5:6750991-6751010 | MsG0580024599.01.T01:CDS | 40.0% |
!! | TCAATAATGAGCTTGCTAGG+TGG | + | Chr5:6751110-6751129 | MsG0580024599.01.T01:CDS | 40.0% |
GATTTGGCAAGTGGCGATTT+GGG | + | Chr5:6751057-6751076 | MsG0580024599.01.T01:CDS | 45.0% | |
TATCTTATCAGACACTCCCG+CGG | - | Chr5:6751232-6751251 | None:intergenic | 45.0% | |
TTTGGAGGAGTTTAATGGGG+TGG | + | Chr5:6750936-6750955 | MsG0580024599.01.T01:CDS | 45.0% | |
! | CGGCTTGTATGTTTTACGAG+TGG | + | Chr5:6751197-6751216 | MsG0580024599.01.T01:CDS | 45.0% |
! | GGCGATTTGGGTAATTTGGA+AGG | + | Chr5:6751069-6751088 | MsG0580024599.01.T01:CDS | 45.0% |
! | TGATTTGGCAAGTGGCGATT+TGG | + | Chr5:6751056-6751075 | MsG0580024599.01.T01:CDS | 45.0% |
!! | AGGAGGTTAAGGTGTTGTCT+TGG | + | Chr5:6751146-6751165 | MsG0580024599.01.T01:CDS | 45.0% |
!! | AGGTTAAGGTGTTGTCTTGG+AGG | + | Chr5:6751149-6751168 | MsG0580024599.01.T01:CDS | 45.0% |
!! | ATTGCGGTTGATTTGGCAAG+TGG | + | Chr5:6751048-6751067 | MsG0580024599.01.T01:CDS | 45.0% |
!! | TAAGGTGTTGTCTTGGAGGT+GGG | + | Chr5:6751153-6751172 | MsG0580024599.01.T01:CDS | 45.0% |
!! | TTAAGGTGTTGTCTTGGAGG+TGG | + | Chr5:6751152-6751171 | MsG0580024599.01.T01:CDS | 45.0% |
GGAAGGGATTGCGGTTGATT+TGG | + | Chr5:6751041-6751060 | MsG0580024599.01.T01:CDS | 50.0% | |
TTGTCTTGGAGGTGGGTGTT+GGG | + | Chr5:6751160-6751179 | MsG0580024599.01.T01:CDS | 50.0% | |
!! | ATCCATTGGGAGTGTTGGGA+GGG | + | Chr5:6750995-6751014 | MsG0580024599.01.T01:CDS | 50.0% |
!! | TATCCATTGGGAGTGTTGGG+AGG | + | Chr5:6750994-6751013 | MsG0580024599.01.T01:CDS | 50.0% |
!! | TGAGATGGTGGAGGAGGTTA+AGG | + | Chr5:6751135-6751154 | MsG0580024599.01.T01:CDS | 50.0% |
GTTGTCTTGGAGGTGGGTGT+TGG | + | Chr5:6751159-6751178 | MsG0580024599.01.T01:CDS | 55.0% | |
TGCTAGGTGGGATGAGATGG+TGG | + | Chr5:6751123-6751142 | MsG0580024599.01.T01:CDS | 55.0% | |
! | GCTTGCTAGGTGGGATGAGA+TGG | + | Chr5:6751120-6751139 | MsG0580024599.01.T01:CDS | 55.0% |
! | TAGGTGGGATGAGATGGTGG+AGG | + | Chr5:6751126-6751145 | MsG0580024599.01.T01:CDS | 55.0% |
CTCCCTCCCAACACTCCCAA+TGG | - | Chr5:6751000-6751019 | None:intergenic | 60.0% | |
!! | ACGAGTGGAGTTGGTGTCCG+CGG | + | Chr5:6751212-6751231 | MsG0580024599.01.T01:CDS | 60.0% |
!! | CATTGGGAGTGTTGGGAGGG+AGG | + | Chr5:6750998-6751017 | MsG0580024599.01.T01:CDS | 60.0% |
!! | GTGGGATGAGATGGTGGAGG+AGG | + | Chr5:6751129-6751148 | MsG0580024599.01.T01:CDS | 60.0% |
!! | CGAGTGGAGTTGGTGTCCGC+GGG | + | Chr5:6751213-6751232 | MsG0580024599.01.T01:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr5 | gene | 6750923 | 6751252 | 6750923 | ID=MsG0580024599.01;Name=MsG0580024599.01 |
Chr5 | mRNA | 6750923 | 6751252 | 6750923 | ID=MsG0580024599.01.T01;Parent=MsG0580024599.01;Name=MsG0580024599.01.T01;_AED=0.47;_eAED=0.47;_QI=0|-1|0|1|-1|1|1|0|109 |
Chr5 | exon | 6750923 | 6751252 | 6750923 | ID=MsG0580024599.01.T01:exon:859;Parent=MsG0580024599.01.T01 |
Chr5 | CDS | 6750923 | 6751252 | 6750923 | ID=MsG0580024599.01.T01:cds;Parent=MsG0580024599.01.T01 |
Gene Sequence |
Protein sequence |