AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280011110.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011110.01.T01 MTR_2g098950 79.932 294 10 2 16 260 36 329 4.73e-163 455
MsG0280011110.01.T01 MTR_4g067310 73.720 293 28 2 16 259 37 329 4.28e-149 419
MsG0280011110.01.T01 MTR_1g076850 52.721 294 90 2 16 260 30 323 5.09e-103 303
MsG0280011110.01.T01 MTR_6g089480 50.340 294 95 3 16 258 16 309 6.57e-98 289
MsG0280011110.01.T01 MTR_5g079460 54.639 291 82 3 16 256 89 379 2.03e-97 290
MsG0280011110.01.T01 MTR_1g101950 50.512 293 94 2 16 257 45 337 1.37e-96 286
MsG0280011110.01.T01 MTR_7g075860 44.373 311 120 4 1 258 48 358 7.08e-80 245
MsG0280011110.01.T01 MTR_6g089480 48.837 258 81 3 16 222 16 273 7.72e-80 242
MsG0280011110.01.T01 MTR_6g089480 49.412 255 78 3 16 219 16 270 1.14e-79 241
MsG0280011110.01.T01 MTR_1g057810 43.617 282 109 3 25 256 279 560 2.80e-70 226
MsG0280011110.01.T01 MTR_1g069490 55.208 192 84 2 68 257 207 398 5.41e-69 218
MsG0280011110.01.T01 MTR_1g069745 41.581 291 107 6 18 257 7 285 2.32e-68 213
MsG0280011110.01.T01 MTR_1g105150 44.403 268 113 4 25 256 279 546 2.54e-66 215
MsG0280011110.01.T01 MTR_1g054730 44.974 189 76 1 68 256 226 386 1.13e-45 157
MsG0280011110.01.T01 MTR_4g019165 30.631 333 149 4 7 257 120 452 4.13e-38 139
MsG0280011110.01.T01 MTR_5g044990 30.392 306 145 5 20 257 250 555 6.10e-37 137
MsG0280011110.01.T01 MTR_0046s0180 51.485 101 49 0 156 256 8 108 1.48e-32 115
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011110.01.T01 AT3G59480 67.918 293 45 1 16 259 32 324 6.36e-138 391
MsG0280011110.01.T01 AT2G31390 67.577 293 46 2 16 259 31 323 1.91e-134 382
MsG0280011110.01.T01 AT1G06030 65.870 293 51 2 16 259 33 325 1.18e-133 380
MsG0280011110.01.T01 AT1G06020 64.505 293 55 2 16 259 32 324 3.21e-130 372
MsG0280011110.01.T01 AT4G10260 53.741 294 87 1 16 260 28 321 7.16e-104 305
MsG0280011110.01.T01 AT1G66430 51.903 289 89 2 16 254 87 375 4.00e-101 300
MsG0280011110.01.T01 AT5G51830 52.703 296 89 3 16 260 45 340 2.80e-100 296
MsG0280011110.01.T01 AT5G51830 52.703 296 89 3 16 260 45 340 2.80e-100 296
MsG0280011110.01.T01 AT1G50390 61.176 170 37 1 90 259 1 141 6.02e-67 204
MsG0280011110.01.T01 AT3G54090 31.288 326 143 4 13 257 136 461 9.44e-39 141
MsG0280011110.01.T01 AT1G69200 28.618 304 145 6 6 237 229 532 4.14e-33 127

Find 77 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAGGAGCAACTTCAAATT+TGG 0.187281 2:-79712092 None:intergenic
TTCCTTTGTTGGTGCTTTAT+TGG 0.217574 2:+79712337 MsG0280011110.01.T01:CDS
GAGAAGGCAGCCAGCTTCTT+TGG 0.228047 2:-79711898 None:intergenic
AGCAATCACAACTACTAAAA+AGG 0.271618 2:+79712611 MsG0280011110.01.T01:CDS
GCAAGCAAATACTGAGTATC+TGG 0.286211 2:+79711973 MsG0280011110.01.T01:CDS
CTAAGCACTTACTTCTAATA+TGG 0.330358 2:-79712381 None:intergenic
CATGCTCGTCGGGATCTTAA+AGG 0.337842 2:+79710380 MsG0280011110.01.T01:CDS
TGGCTCCACAATCAAGCTTA+TGG 0.338825 2:-79711841 None:intergenic
GCCATCGCTGTTTCCCGATT+AGG 0.356581 2:+79710309 MsG0280011110.01.T01:CDS
AGGCAGCTTTGCCTCCTAAT+CGG 0.387773 2:-79710323 None:intergenic
GGTGCCGGTGATTCCTTTGT+TGG 0.398386 2:+79712326 MsG0280011110.01.T01:CDS
GGCCAAGATTGTTGATGATC+AGG 0.401747 2:+79712358 MsG0280011110.01.T01:CDS
GACGTTCGCTGGTGCACCGC+CGG 0.406668 2:-79710286 None:intergenic
GCCGGGAGCTTTGAGAAAAC+CGG 0.420639 2:-79710268 None:intergenic
GTCAATACAGTTGATACAAC+TGG 0.425906 2:+79712305 MsG0280011110.01.T01:CDS
TTGCGAGCTTCTTCCGCTGA+GGG 0.429226 2:-79711954 None:intergenic
CACAGTGGTAGGCGGAGGTT+AGG 0.430184 2:-79711930 None:intergenic
AAGTTGCTCCTTGTCACTCT+TGG 0.431035 2:+79712101 MsG0280011110.01.T01:CDS
CTTGTCACTCTTGGTGAACA+TGG 0.436126 2:+79712110 MsG0280011110.01.T01:CDS
CAAGGAGCAACTTCAAATTT+GGG 0.437763 2:-79712091 None:intergenic
GGCAGCTTTGCCTCCTAATC+GGG 0.442724 2:-79710322 None:intergenic
CAGGAATCTATGCTTTGATC+AGG 0.443006 2:-79712674 None:intergenic
ATGTAGATCAGCACACTTGA+AGG 0.450810 2:+79711863 MsG0280011110.01.T01:CDS
ACAGCGATGGCGACGTTCGC+TGG 0.452557 2:-79710297 None:intergenic
ACGTTCGCTGGTGCACCGCC+GGG 0.457893 2:-79710285 None:intergenic
TTCAGTACATCCTCCTCCTT+GGG 0.459048 2:-79712651 None:intergenic
GTTCAGTACATCCTCCTCCT+TGG 0.459298 2:-79712652 None:intergenic
GCTGCCTTCGTCGGGAAACT+AGG 0.459666 2:+79710339 MsG0280011110.01.T01:CDS
CCGCTGAGGGCCACAGTGGT+AGG 0.460757 2:-79711941 None:intergenic
GGCCTGATCATCAACAATCT+TGG 0.466456 2:-79712360 None:intergenic
TCCTCCTCCTTGGGAAGAGC+AGG 0.469695 2:-79712642 None:intergenic
GAGGCAAAGCTGCCTTCGTC+GGG 0.469972 2:+79710331 MsG0280011110.01.T01:CDS
TAGGCGGAGGTTAGGATCAT+AGG 0.483812 2:-79711922 None:intergenic
CCGGGAGCTTTGAGAAAACC+GGG 0.487608 2:-79710267 None:intergenic
AATGAGCTGGAGTTCCTGAC+TGG 0.488918 2:+79712026 MsG0280011110.01.T01:CDS
AGTTCGGTCACATGCTCGTC+GGG 0.494876 2:+79710370 MsG0280011110.01.T01:CDS
CTTGCGAGCTTCTTCCGCTG+AGG 0.497527 2:-79711955 None:intergenic
GGAAAAGGCTGATTTGATCA+AGG 0.504055 2:+79711995 MsG0280011110.01.T01:CDS
GGTCTCCCTGCAGAAGCCCC+CGG 0.509041 2:+79710249 MsG0280011110.01.T01:intron
AATACTGAGTATCTGGGAAA+AGG 0.509401 2:+79711980 MsG0280011110.01.T01:CDS
GGAGGCAAAGCTGCCTTCGT+CGG 0.509809 2:+79710330 MsG0280011110.01.T01:CDS
ATGGAAGTTGCCAAAGAAGC+TGG 0.510846 2:+79711888 MsG0280011110.01.T01:CDS
AAACTAGGCGATGACGAGTT+CGG 0.513562 2:+79710354 MsG0280011110.01.T01:CDS
ATGCTACTGCTTTGACATTG+TGG 0.517687 2:+79712066 MsG0280011110.01.T01:CDS
ATCGCTGTTTCCCGATTAGG+AGG 0.542152 2:+79710312 MsG0280011110.01.T01:CDS
TCCTGCTCTTCCCAAGGAGG+AGG 0.543892 2:+79712641 MsG0280011110.01.T01:CDS
AGGGCCACAGTGGTAGGCGG+AGG 0.545092 2:-79711935 None:intergenic
CGTCGGGATCTTAAAGGAAA+CGG 0.548058 2:+79710386 MsG0280011110.01.T01:CDS
CAAGGTTAGTGATAATGAGC+TGG 0.551346 2:+79712013 MsG0280011110.01.T01:CDS
CAAGCAAATACTGAGTATCT+GGG 0.559518 2:+79711974 MsG0280011110.01.T01:CDS
TTCAAGTGTGCTGATCTACA+TGG 0.561390 2:-79711861 None:intergenic
TCAAGCTTATGGATCCATAG+TGG 0.562307 2:-79711830 None:intergenic
AGCACCAACAAAGGAATCAC+CGG 0.564007 2:-79712330 None:intergenic
ATCAGCACACTTGAAGGCAA+TGG 0.564340 2:+79711869 MsG0280011110.01.T01:CDS
GGTTAGGATCATAGGAGAGA+AGG 0.565489 2:-79711914 None:intergenic
AGCAATTCCTGCTCTTCCCA+AGG 0.570369 2:+79712635 MsG0280011110.01.T01:CDS
TGGATCCATAAGCTTGATTG+TGG 0.577549 2:+79711836 MsG0280011110.01.T01:CDS
GAGTTCGGTCACATGCTCGT+CGG 0.579094 2:+79710369 MsG0280011110.01.T01:CDS
ACAGTTGATACAACTGGTGC+CGG 0.581263 2:+79712311 MsG0280011110.01.T01:CDS
GGAAACGGTGTGGTCGCAGA+AGG 0.582324 2:+79710401 MsG0280011110.01.T01:CDS
TCCTAATCGGGAAACAGCGA+TGG 0.585587 2:-79710310 None:intergenic
CTCAAGTTTGCAAATGCATG+TGG 0.598828 2:+79712588 MsG0280011110.01.T01:CDS
ATCGCCTAGTTTCCCGACGA+AGG 0.599330 2:-79710343 None:intergenic
GGCCAATAAAGCACCAACAA+AGG 0.608161 2:-79712339 None:intergenic
CTGAGGGCCACAGTGGTAGG+CGG 0.610577 2:-79711938 None:intergenic
TCTTCGTCATACTCTTAGAG+AGG 0.613240 2:+79709799 MsG0280011110.01.T01:CDS
CATGTTCACCAAGAGTGACA+AGG 0.619134 2:-79712109 None:intergenic
CTTCGTCATACTCTTAGAGA+GGG 0.619792 2:+79709800 MsG0280011110.01.T01:CDS
TATGACGAAGAGTGAAATTG+CGG 0.640605 2:-79709787 None:intergenic
GGGAGCTTTGAGAAAACCGG+GGG 0.651383 2:-79710265 None:intergenic
CCTACCACTGTGGCCCTCAG+CGG 0.657292 2:+79711941 MsG0280011110.01.T01:CDS
AATTCCTGCTCTTCCCAAGG+AGG 0.668223 2:+79712638 MsG0280011110.01.T01:CDS
CGGGAGCTTTGAGAAAACCG+GGG 0.680003 2:-79710266 None:intergenic
TCTTCCGCTGAGGGCCACAG+TGG 0.686880 2:-79711945 None:intergenic
GGATCTTAAAGGAAACGGTG+TGG 0.728084 2:+79710391 MsG0280011110.01.T01:CDS
CTAACCTCCGCCTACCACTG+TGG 0.743836 2:+79711931 MsG0280011110.01.T01:CDS
TGGCGCAAGATACTACACCA+AGG 0.783785 2:+79712130 MsG0280011110.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCTAGAAAAATAAAAAGAAT+TGG - Chr2:79711524-79711543 None:intergenic 15.0%
!! TTACTATATGGTAAATAAAT+TGG + Chr2:79710980-79710999 MsG0280011110.01.T01:intron 15.0%
!!! AAACTTAATTTTAATTTGAC+AGG + Chr2:79711797-79711816 MsG0280011110.01.T01:intron 15.0%
!!! ATATGGTTTTGATTTTATTT+TGG + Chr2:79710805-79710824 MsG0280011110.01.T01:intron 15.0%
!! AAAACCATATCATATAGTAT+CGG - Chr2:79710795-79710814 None:intergenic 20.0%
!! AAAATTCGCATATATGTAAA+AGG - Chr2:79711216-79711235 None:intergenic 20.0%
!! AAACATTAAAGAAAATCAAC+TGG - Chr2:79711400-79711419 None:intergenic 20.0%
!! AAATTCGCATATATGTAAAA+GGG - Chr2:79711215-79711234 None:intergenic 20.0%
!! AATTCGTCCATAAAATTATA+CGG - Chr2:79711251-79711270 None:intergenic 20.0%
!! AATTTAAATAATGCAACTTG+TGG + Chr2:79711543-79711562 MsG0280011110.01.T01:intron 20.0%
!! AGAATAAAGAAATTACTACA+TGG - Chr2:79711289-79711308 None:intergenic 20.0%
!! ATCAATTACAAAAACTCAAA+CGG - Chr2:79712519-79712538 None:intergenic 20.0%
!! ATTAGTAATATAAATTCGCA+TGG + Chr2:79711586-79711605 MsG0280011110.01.T01:intron 20.0%
!! CTCAAATTTATTAGTAAGAT+TGG + Chr2:79711108-79711127 MsG0280011110.01.T01:intron 20.0%
!! TTATTTACCATATAGTAACA+TGG - Chr2:79710978-79710997 None:intergenic 20.0%
!! TTCTAAACAAAGATATTCTT+TGG - Chr2:79712217-79712236 None:intergenic 20.0%
!! TTGAATTTGATTATTACACA+TGG - Chr2:79711668-79711687 None:intergenic 20.0%
!!! ATAGAAGGAGTTTTTTTTTT+TGG - Chr2:79710035-79710054 None:intergenic 20.0%
!!! TATTCATCCTCTAAATTTTT+AGG + Chr2:79710868-79710887 MsG0280011110.01.T01:intron 20.0%
!!! TGATTTATTTTCATAATTGC+AGG + Chr2:79712542-79712561 MsG0280011110.01.T01:intron 20.0%
!!! TTTTATCTTCATCAACTTTA+AGG - Chr2:79710899-79710918 None:intergenic 20.0%
! AACCAATAGTACAAAAAGTA+GGG - Chr2:79712168-79712187 None:intergenic 25.0%
! ATATTAGAAGTAAGTGCTTA+GGG + Chr2:79712383-79712402 MsG0280011110.01.T01:intron 25.0%
! ATTAGAAACAGAAAAACAGA+AGG - Chr2:79710000-79710019 None:intergenic 25.0%
! ATTAGTCCTAGATCTAATAA+TGG - Chr2:79710750-79710769 None:intergenic 25.0%
! CAAAATCTGTTGAATAATGT+TGG - Chr2:79711074-79711093 None:intergenic 25.0%
! CGTAGGAAAAAAAAAGAATT+AGG + Chr2:79711349-79711368 MsG0280011110.01.T01:intron 25.0%
! CTTACTAATAAATTTGAGCA+CGG - Chr2:79711106-79711125 None:intergenic 25.0%
! CTTTAAACCATGTTACTATA+TGG + Chr2:79710968-79710987 MsG0280011110.01.T01:intron 25.0%
! TATATGTAAAAGGGTCAATT+CGG - Chr2:79711206-79711225 None:intergenic 25.0%
! TCAATTACAAAAACTCAAAC+GGG - Chr2:79712518-79712537 None:intergenic 25.0%
! TTCGTGGTAAATATTATAGA+AGG - Chr2:79710050-79710069 None:intergenic 25.0%
!! CATTGACTAAGTACATTATT+TGG + Chr2:79711629-79711648 MsG0280011110.01.T01:intron 25.0%
!! TGATTTACCATTTGAGTTAT+GGG + Chr2:79711759-79711778 MsG0280011110.01.T01:intron 25.0%
!! TTTTGATCCAATTGTAAGAT+CGG + Chr2:79711137-79711156 MsG0280011110.01.T01:intron 25.0%
!!! AAGTTGATGAAGATAAAAAG+AGG + Chr2:79710901-79710920 MsG0280011110.01.T01:intron 25.0%
!!! ACTTCTTTTTCAAACTTCAA+TGG + Chr2:79710139-79710158 MsG0280011110.01.T01:intron 25.0%
!!! AGATAGAAAAAAAGTGTTTC+GGG - Chr2:79710105-79710124 None:intergenic 25.0%
!!! GAGATAGAAAAAAAGTGTTT+CGG - Chr2:79710106-79710125 None:intergenic 25.0%
!!! GGTTTTGATTTTATTTTGGT+GGG + Chr2:79710809-79710828 MsG0280011110.01.T01:intron 25.0%
!!! TCTTTTTTTTTCCTACGTAA+TGG - Chr2:79711346-79711365 None:intergenic 25.0%
!!! TGGTTTTGATTTTATTTTGG+TGG + Chr2:79710808-79710827 MsG0280011110.01.T01:intron 25.0%
ACGTAATGGTAACTATCAAA+TGG - Chr2:79711332-79711351 None:intergenic 30.0%
ACTTAGTCAATGATGTAACA+CGG - Chr2:79711621-79711640 None:intergenic 30.0%
AGCAATCACAACTACTAAAA+AGG + Chr2:79712611-79712630 MsG0280011110.01.T01:CDS 30.0%
AGTAGCTAATGTGTATTAAG+GGG - Chr2:79712413-79712432 None:intergenic 30.0%
ATACACATTAGCTACTCAAA+TGG + Chr2:79712417-79712436 MsG0280011110.01.T01:intron 30.0%
ATTTAGCATGACGACAAAAT+TGG - Chr2:79710944-79710963 None:intergenic 30.0%
CAACCAATAGTACAAAAAGT+AGG - Chr2:79712169-79712188 None:intergenic 30.0%
CAATTACAAAAACTCAAACG+GGG - Chr2:79712517-79712536 None:intergenic 30.0%
CATATTAGAAGTAAGTGCTT+AGG + Chr2:79712382-79712401 MsG0280011110.01.T01:intron 30.0%
CATTGATAAAATTACTGCCT+TGG + Chr2:79711726-79711745 MsG0280011110.01.T01:intron 30.0%
CTAAGCACTTACTTCTAATA+TGG - Chr2:79712384-79712403 None:intergenic 30.0%
CTAATAAGCTGCATAATTTG+AGG - Chr2:79711007-79711026 None:intergenic 30.0%
GAGTAGCTAATGTGTATTAA+GGG - Chr2:79712414-79712433 None:intergenic 30.0%
GCAATCACAACTACTAAAAA+GGG + Chr2:79712612-79712631 MsG0280011110.01.T01:CDS 30.0%
TAAATCACACAATTCAACCA+AGG - Chr2:79711746-79711765 None:intergenic 30.0%
TGAGTAGCTAATGTGTATTA+AGG - Chr2:79712415-79712434 None:intergenic 30.0%
! GATTTACCATTTGAGTTATG+GGG + Chr2:79711760-79711779 MsG0280011110.01.T01:intron 30.0%
! GCTGATTTCTTAGCTAAATT+GGG + Chr2:79709833-79709852 MsG0280011110.01.T01:intron 30.0%
! GTGATTTACCATTTGAGTTA+TGG + Chr2:79711758-79711777 MsG0280011110.01.T01:intron 30.0%
! TAAAAAGAGGCTTTTGAATG+AGG + Chr2:79710914-79710933 MsG0280011110.01.T01:intron 30.0%
! TGTTGGTCCGTATAATTTTA+TGG + Chr2:79711241-79711260 MsG0280011110.01.T01:intron 30.0%
! TTTGATAGTTACCATTACGT+AGG + Chr2:79711332-79711351 MsG0280011110.01.T01:intron 30.0%
!! CACAAATCTGTTTCTATCAT+TGG - Chr2:79711168-79711187 None:intergenic 30.0%
!! TATGCGAATTTTAGAGATGT+TGG + Chr2:79711224-79711243 MsG0280011110.01.T01:intron 30.0%
!! TGCTGATTTCTTAGCTAAAT+TGG + Chr2:79709832-79709851 MsG0280011110.01.T01:intron 30.0%
!!! AAAAAAAGTGTTTCGGGTTT+TGG - Chr2:79710099-79710118 None:intergenic 30.0%
!!! AAAAAAGTGTTTCGGGTTTT+GGG - Chr2:79710098-79710117 None:intergenic 30.0%
!!! TTGATTTTATTTTGGTGGGT+GGG + Chr2:79710813-79710832 MsG0280011110.01.T01:intron 30.0%
!!! TTTGATTTTATTTTGGTGGG+TGG + Chr2:79710812-79710831 MsG0280011110.01.T01:intron 30.0%
AATACTGAGTATCTGGGAAA+AGG + Chr2:79711980-79711999 MsG0280011110.01.T01:CDS 35.0%
ACAAGGAGCAACTTCAAATT+TGG - Chr2:79712095-79712114 None:intergenic 35.0%
AGAAACAGATTTGTGCATGT+TGG + Chr2:79711173-79711192 MsG0280011110.01.T01:intron 35.0%
CAAGCAAATACTGAGTATCT+GGG + Chr2:79711974-79711993 MsG0280011110.01.T01:CDS 35.0%
CAAGGAGCAACTTCAAATTT+GGG - Chr2:79712094-79712113 None:intergenic 35.0%
CATGAAAATTCTGGCAAAAG+GGG - Chr2:79712265-79712284 None:intergenic 35.0%
CCATGAAAATTCTGGCAAAA+GGG - Chr2:79712266-79712285 None:intergenic 35.0%
CTACTTGTCCATGAAAATTC+TGG - Chr2:79712274-79712293 None:intergenic 35.0%
GACTTCAAATTTGTGTGTTG+AGG + Chr2:79710678-79710697 MsG0280011110.01.T01:intron 35.0%
GCAAATTAGTCCATATCACT+TGG + Chr2:79711026-79711045 MsG0280011110.01.T01:intron 35.0%
GCTACCGATACTATATGATA+TGG + Chr2:79710788-79710807 MsG0280011110.01.T01:intron 35.0%
GCTATTATTGTTGGATTCTG+AGG - Chr2:79711423-79711442 None:intergenic 35.0%
GGTGACTCCTAAAAATTTAG+AGG - Chr2:79710878-79710897 None:intergenic 35.0%
TATGACGAAGAGTGAAATTG+CGG - Chr2:79709790-79709809 None:intergenic 35.0%
TCCATGAAAATTCTGGCAAA+AGG - Chr2:79712267-79712286 None:intergenic 35.0%
TCGTCGTATGCTATTATTGT+TGG - Chr2:79711432-79711451 None:intergenic 35.0%
! AGAAGGTATAACCTTTGACA+AGG + Chr2:79710418-79710437 MsG0280011110.01.T01:intron 35.0%
! GTCAATACAGTTGATACAAC+TGG + Chr2:79712305-79712324 MsG0280011110.01.T01:CDS 35.0%
! TAGGGACATAGATTTTACCT+TGG - Chr2:79712150-79712169 None:intergenic 35.0%
! TTCCTTTGTTGGTGCTTTAT+TGG + Chr2:79712337-79712356 MsG0280011110.01.T01:CDS 35.0%
!!! GGATAATCTTTTGACTTGCA+AGG - Chr2:79711053-79711072 None:intergenic 35.0%
!!! GTCCCTACTTTTTGTACTAT+TGG + Chr2:79712163-79712182 MsG0280011110.01.T01:intron 35.0%
!!! TGATTTTATTTTGGTGGGTG+GGG + Chr2:79710814-79710833 MsG0280011110.01.T01:intron 35.0%
ACTTCAATGGCTTCAAGCAA+TGG + Chr2:79710152-79710171 MsG0280011110.01.T01:intron 40.0%
AGAGAGGAGATACAAGAATG+AGG - Chr2:79710073-79710092 None:intergenic 40.0%
AGATACAAGAATGAGGTTCG+TGG - Chr2:79710066-79710085 None:intergenic 40.0%
ATGCTACTGCTTTGACATTG+TGG + Chr2:79712066-79712085 MsG0280011110.01.T01:CDS 40.0%
ATGTAAAAGGGTCAATTCGG+TGG - Chr2:79711203-79711222 None:intergenic 40.0%
ATGTAGATCAGCACACTTGA+AGG + Chr2:79711863-79711882 MsG0280011110.01.T01:CDS 40.0%
CGCTGGAGCAATATATTTCA+TGG + Chr2:79711490-79711509 MsG0280011110.01.T01:intron 40.0%
CTCAAGTTTGCAAATGCATG+TGG + Chr2:79712588-79712607 MsG0280011110.01.T01:CDS 40.0%
CTTCGTCATACTCTTAGAGA+GGG + Chr2:79709800-79709819 MsG0280011110.01.T01:CDS 40.0%
GAGCAATATATTTCATGGCG+TGG + Chr2:79711495-79711514 MsG0280011110.01.T01:intron 40.0%
GATCCAATTGTAAGATCGGT+TGG + Chr2:79711141-79711160 MsG0280011110.01.T01:intron 40.0%
GCAAGCAAATACTGAGTATC+TGG + Chr2:79711973-79711992 MsG0280011110.01.T01:CDS 40.0%
TCAAGCTTATGGATCCATAG+TGG - Chr2:79711833-79711852 None:intergenic 40.0%
TCTTCGTCATACTCTTAGAG+AGG + Chr2:79709799-79709818 MsG0280011110.01.T01:CDS 40.0%
TGGATCCATAAGCTTGATTG+TGG + Chr2:79711836-79711855 MsG0280011110.01.T01:CDS 40.0%
TGGGGTCCATTATTAGATCT+AGG + Chr2:79710741-79710760 MsG0280011110.01.T01:intron 40.0%
! CAAGGTTAGTGATAATGAGC+TGG + Chr2:79712013-79712032 MsG0280011110.01.T01:CDS 40.0%
! CAGGCAAAAGTTTTCCACTA+TGG + Chr2:79711816-79711835 MsG0280011110.01.T01:intron 40.0%
! CCCTTTTGCCAGAATTTTCA+TGG + Chr2:79712263-79712282 MsG0280011110.01.T01:intron 40.0%
! TACCATTTGAGTTATGGGGT+AGG + Chr2:79711764-79711783 MsG0280011110.01.T01:intron 40.0%
! TTAAGAAGCATGTCAGCACT+TGG - Chr2:79710514-79710533 None:intergenic 40.0%
! TTCAAGTGTGCTGATCTACA+TGG - Chr2:79711864-79711883 None:intergenic 40.0%
!! CAATTTTGTCACTTCCAGTC+AGG - Chr2:79712043-79712062 None:intergenic 40.0%
!! CGTTGGTAGGTTTTATCAGT+GGG + Chr2:79711455-79711474 MsG0280011110.01.T01:intron 40.0%
!! GGAAAAGGCTGATTTGATCA+AGG + Chr2:79711995-79712014 MsG0280011110.01.T01:CDS 40.0%
!! GTTGGTAGGTTTTATCAGTG+GGG + Chr2:79711456-79711475 MsG0280011110.01.T01:intron 40.0%
!! TCATATAGTATCGGTAGCTC+TGG - Chr2:79710786-79710805 None:intergenic 40.0%
!! TTGGTAGGTTTTATCAGTGG+GGG + Chr2:79711457-79711476 MsG0280011110.01.T01:intron 40.0%
!!! GATTTTATTTTGGTGGGTGG+GGG + Chr2:79710815-79710834 MsG0280011110.01.T01:intron 40.0%
AAAATTCTGGCAAAAGGGGC+AGG - Chr2:79712261-79712280 None:intergenic 45.0%
AAACTAGGCGATGACGAGTT+CGG + Chr2:79710354-79710373 MsG0280011110.01.T01:CDS 45.0%
AAGTTGCTCCTTGTCACTCT+TGG + Chr2:79712101-79712120 MsG0280011110.01.T01:CDS 45.0%
ACTTTGTCCAACTGTTTCCG+GGG + Chr2:79710228-79710247 MsG0280011110.01.T01:intron 45.0%
AGAAACTAGCCCTAGTGAAG+AGG - Chr2:79709943-79709962 None:intergenic 45.0%
AGCACCAACAAAGGAATCAC+CGG - Chr2:79712333-79712352 None:intergenic 45.0%
AGTTCGAGGTTGAGTTCTTC+AGG - Chr2:79710538-79710557 None:intergenic 45.0%
ATCAGCACACTTGAAGGCAA+TGG + Chr2:79711869-79711888 MsG0280011110.01.T01:CDS 45.0%
ATGGAAGTTGCCAAAGAAGC+TGG + Chr2:79711888-79711907 MsG0280011110.01.T01:CDS 45.0%
CACCTACCCCATAACTCAAA+TGG - Chr2:79711769-79711788 None:intergenic 45.0%
CATAAACTCACGCTCTCCAT+CGG - Chr2:79710479-79710498 None:intergenic 45.0%
CATGTTCACCAAGAGTGACA+AGG - Chr2:79712112-79712131 None:intergenic 45.0%
CGACTTTGTCCAACTGTTTC+CGG + Chr2:79710226-79710245 MsG0280011110.01.T01:intron 45.0%
CGTCGGGATCTTAAAGGAAA+CGG + Chr2:79710386-79710405 MsG0280011110.01.T01:CDS 45.0%
CTTGCAAGGACCAAGTGATA+TGG - Chr2:79711039-79711058 None:intergenic 45.0%
CTTGTCACTCTTGGTGAACA+TGG + Chr2:79712110-79712129 MsG0280011110.01.T01:CDS 45.0%
GAAACTAGCCCTAGTGAAGA+GGG - Chr2:79709942-79709961 None:intergenic 45.0%
GACTTTGTCCAACTGTTTCC+GGG + Chr2:79710227-79710246 MsG0280011110.01.T01:intron 45.0%
GGACCAACCGATCTTACAAT+TGG - Chr2:79711147-79711166 None:intergenic 45.0%
GGATCTTAAAGGAAACGGTG+TGG + Chr2:79710391-79710410 MsG0280011110.01.T01:CDS 45.0%
GGCCTGATCATCAACAATCT+TGG - Chr2:79712363-79712382 None:intergenic 45.0%
GGTTAGGATCATAGGAGAGA+AGG - Chr2:79711917-79711936 None:intergenic 45.0%
GTACAGATCTGATGAGTTCG+AGG - Chr2:79710552-79710571 None:intergenic 45.0%
TGGCTCCACAATCAAGCTTA+TGG - Chr2:79711844-79711863 None:intergenic 45.0%
TTCAGTACATCCTCCTCCTT+GGG - Chr2:79712654-79712673 None:intergenic 45.0%
! ACAGTTGATACAACTGGTGC+CGG + Chr2:79712311-79712330 MsG0280011110.01.T01:CDS 45.0%
! ATAGCATACGACGAAAGCGT+TGG + Chr2:79711438-79711457 MsG0280011110.01.T01:intron 45.0%
! GGCCAATAAAGCACCAACAA+AGG - Chr2:79712342-79712361 None:intergenic 45.0%
!! GCGTTGGTAGGTTTTATCAG+TGG + Chr2:79711454-79711473 MsG0280011110.01.T01:intron 45.0%
!! GGCCAAGATTGTTGATGATC+AGG + Chr2:79712358-79712377 MsG0280011110.01.T01:CDS 45.0%
!! TGGTAGGTTTTATCAGTGGG+GGG + Chr2:79711458-79711477 MsG0280011110.01.T01:intron 45.0%
AATGAGCTGGAGTTCCTGAC+TGG + Chr2:79712026-79712045 MsG0280011110.01.T01:CDS 50.0%
AATTCCTGCTCTTCCCAAGG+AGG + Chr2:79712638-79712657 MsG0280011110.01.T01:CDS 50.0%
ACAAGGTGCACGTACTGCTT+TGG + Chr2:79710435-79710454 MsG0280011110.01.T01:intron 50.0%
AGCAATTCCTGCTCTTCCCA+AGG + Chr2:79712635-79712654 MsG0280011110.01.T01:CDS 50.0%
AGGCAGCTTTGCCTCCTAAT+CGG - Chr2:79710326-79710345 None:intergenic 50.0%
CAGTACGTGCACCTTGTCAA+AGG - Chr2:79710432-79710451 None:intergenic 50.0%
CATGCTCGTCGGGATCTTAA+AGG + Chr2:79710380-79710399 MsG0280011110.01.T01:CDS 50.0%
CGACATTGACATGTCAGCGT+TGG + Chr2:79710705-79710724 MsG0280011110.01.T01:intron 50.0%
CGTTGGTGTGTTCATGTGGT+GGG + Chr2:79710722-79710741 MsG0280011110.01.T01:intron 50.0%
CTGATCAGGAAAGACGCTCT+CGG + Chr2:79709913-79709932 MsG0280011110.01.T01:intron 50.0%
GTTCAGTACATCCTCCTCCT+TGG - Chr2:79712655-79712674 None:intergenic 50.0%
GTTGGTGTGTTCATGTGGTG+GGG + Chr2:79710723-79710742 MsG0280011110.01.T01:intron 50.0%
TAGGCGGAGGTTAGGATCAT+AGG - Chr2:79711925-79711944 None:intergenic 50.0%
TCCTAATCGGGAAACAGCGA+TGG - Chr2:79710313-79710332 None:intergenic 50.0%
TGATCAGGAAAGACGCTCTC+GGG + Chr2:79709914-79709933 MsG0280011110.01.T01:intron 50.0%
TGGCGCAAGATACTACACCA+AGG + Chr2:79712130-79712149 MsG0280011110.01.T01:CDS 50.0%
TTTGTTACTCTACGCGCCGA+TGG + Chr2:79710460-79710479 MsG0280011110.01.T01:intron 50.0%
! ACTGGTCTCATCGTCAGCTT+CGG + Chr2:79710191-79710210 MsG0280011110.01.T01:intron 50.0%
! ATCGCTGTTTCCCGATTAGG+AGG + Chr2:79710312-79710331 MsG0280011110.01.T01:CDS 50.0%
!! AGGTTTTATCAGTGGGGGGT+TGG + Chr2:79711462-79711481 MsG0280011110.01.T01:intron 50.0%
!! CATACGACGAAAGCGTTGGT+AGG + Chr2:79711442-79711461 MsG0280011110.01.T01:intron 50.0%
!! GGTTTTATCAGTGGGGGGTT+GGG + Chr2:79711463-79711482 MsG0280011110.01.T01:intron 50.0%
!! TCAGCGTTGGTGTGTTCATG+TGG + Chr2:79710718-79710737 MsG0280011110.01.T01:intron 50.0%
!!! TTTCGGGTTTTGGGAGAGAG+AGG - Chr2:79710089-79710108 None:intergenic 50.0%
AGCAATGGCATCCCAACCAC+AGG + Chr2:79710167-79710186 MsG0280011110.01.T01:intron 55.0%
AGTTCGGTCACATGCTCGTC+GGG + Chr2:79710370-79710389 MsG0280011110.01.T01:CDS 55.0%
ATCGCCTAGTTTCCCGACGA+AGG - Chr2:79710346-79710365 None:intergenic 55.0%
ATGAGACCAGTGCCTGTGGT+TGG - Chr2:79710182-79710201 None:intergenic 55.0%
CGTCTTTCCTGATCAGAGCC+GGG - Chr2:79709909-79709928 None:intergenic 55.0%
GAGAAGGCAGCCAGCTTCTT+TGG - Chr2:79711901-79711920 None:intergenic 55.0%
GAGTTCGGTCACATGCTCGT+CGG + Chr2:79710369-79710388 MsG0280011110.01.T01:CDS 55.0%
GCGTCTTTCCTGATCAGAGC+CGG - Chr2:79709910-79709929 None:intergenic 55.0%
GGCAGCTTTGCCTCCTAATC+GGG - Chr2:79710325-79710344 None:intergenic 55.0%
TGAGACCAGTGCCTGTGGTT+GGG - Chr2:79710181-79710200 None:intergenic 55.0%
TTGCGAGCTTCTTCCGCTGA+GGG - Chr2:79711957-79711976 None:intergenic 55.0%
! CCCGGTTTTCTCAAAGCTCC+CGG + Chr2:79710267-79710286 MsG0280011110.01.T01:CDS 55.0%
! GCCATCGCTGTTTCCCGATT+AGG + Chr2:79710309-79710328 MsG0280011110.01.T01:CDS 55.0%
! GCGTTGGTGTGTTCATGTGG+TGG + Chr2:79710721-79710740 MsG0280011110.01.T01:intron 55.0%
! GGTTTTCTCAAAGCTCCCGG+CGG + Chr2:79710270-79710289 MsG0280011110.01.T01:CDS 55.0%
!! CCGGGAGCTTTGAGAAAACC+GGG - Chr2:79710270-79710289 None:intergenic 55.0%
!! CGGGAGCTTTGAGAAAACCG+GGG - Chr2:79710269-79710288 None:intergenic 55.0%
!! GCCGGGAGCTTTGAGAAAAC+CGG - Chr2:79710271-79710290 None:intergenic 55.0%
!! GGGAGCTTTGAGAAAACCGG+GGG - Chr2:79710268-79710287 None:intergenic 55.0%
!! GGTGCCGGTGATTCCTTTGT+TGG + Chr2:79712326-79712345 MsG0280011110.01.T01:CDS 55.0%
!! TTTTGGTGGGTGGGGGTTGT+TGG + Chr2:79710822-79710841 MsG0280011110.01.T01:intron 55.0%
AGAAAACCGGGGGCTTCTGC+AGG - Chr2:79710258-79710277 None:intergenic 60.0%
AGGGAGACCCCGGAAACAGT+TGG - Chr2:79710238-79710257 None:intergenic 60.0%
ATCAGAGCCGGGAGGTCGAT+CGG - Chr2:79709898-79709917 None:intergenic 60.0%
CACAGTGGTAGGCGGAGGTT+AGG - Chr2:79711933-79711952 None:intergenic 60.0%
CTAACCTCCGCCTACCACTG+TGG + Chr2:79711931-79711950 MsG0280011110.01.T01:CDS 60.0%
CTCGGGCACCCTCTTCACTA+GGG + Chr2:79709931-79709950 MsG0280011110.01.T01:intron 60.0%
CTTGCGAGCTTCTTCCGCTG+AGG - Chr2:79711958-79711977 None:intergenic 60.0%
CTTTCCTGATCAGAGCCGGG+AGG - Chr2:79709906-79709925 None:intergenic 60.0%
GAAAACCGGGGGCTTCTGCA+GGG - Chr2:79710257-79710276 None:intergenic 60.0%
GACGATGAGACCAGTGCCTG+TGG - Chr2:79710186-79710205 None:intergenic 60.0%
GAGGCAAAGCTGCCTTCGTC+GGG + Chr2:79710331-79710350 MsG0280011110.01.T01:CDS 60.0%
GATCGGTGGCGAAGGATGCA+CGG - Chr2:79709881-79709900 None:intergenic 60.0%
GCTGCCTTCGTCGGGAAACT+AGG + Chr2:79710339-79710358 MsG0280011110.01.T01:CDS 60.0%
GGAAACGGTGTGGTCGCAGA+AGG + Chr2:79710401-79710420 MsG0280011110.01.T01:CDS 60.0%
GGAGGCAAAGCTGCCTTCGT+CGG + Chr2:79710330-79710349 MsG0280011110.01.T01:CDS 60.0%
TCCTCCTCCTTGGGAAGAGC+AGG - Chr2:79712645-79712664 None:intergenic 60.0%
TCCTGCTCTTCCCAAGGAGG+AGG + Chr2:79712641-79712660 MsG0280011110.01.T01:CDS 60.0%
TCTCGGGCACCCTCTTCACT+AGG + Chr2:79709930-79709949 MsG0280011110.01.T01:intron 60.0%
ACAGCGATGGCGACGTTCGC+TGG - Chr2:79710300-79710319 None:intergenic 65.0%
CCTACCACTGTGGCCCTCAG+CGG + Chr2:79711941-79711960 MsG0280011110.01.T01:CDS 65.0%
CTGAGGGCCACAGTGGTAGG+CGG - Chr2:79711941-79711960 None:intergenic 65.0%
GGCATCCCAACCACAGGCAC+TGG + Chr2:79710173-79710192 MsG0280011110.01.T01:intron 65.0%
GGTGGGTGGGGGTTGTTGGT+TGG + Chr2:79710826-79710845 MsG0280011110.01.T01:intron 65.0%
GTGGGGGGTTGGGATTTCGC+TGG + Chr2:79711473-79711492 MsG0280011110.01.T01:intron 65.0%
TCTTCCGCTGAGGGCCACAG+TGG - Chr2:79711948-79711967 None:intergenic 65.0%
TTCGCCACCGATCGACCTCC+CGG + Chr2:79709888-79709907 MsG0280011110.01.T01:intron 65.0%
! TCGACCTCCCGGCTCTGATC+AGG + Chr2:79709899-79709918 MsG0280011110.01.T01:intron 65.0%
ACGTTCGCTGGTGCACCGCC+GGG - Chr2:79710288-79710307 None:intergenic 70.0%
AGAGCCGGGAGGTCGATCGG+TGG - Chr2:79709895-79709914 None:intergenic 70.0%
AGGGCCACAGTGGTAGGCGG+AGG - Chr2:79711938-79711957 None:intergenic 70.0%
CCGCTGAGGGCCACAGTGGT+AGG - Chr2:79711944-79711963 None:intergenic 70.0%
GACGTTCGCTGGTGCACCGC+CGG - Chr2:79710289-79710308 None:intergenic 70.0%
GGGAGGTCGATCGGTGGCGA+AGG - Chr2:79709889-79709908 None:intergenic 70.0%
GGGCTTCTGCAGGGAGACCC+CGG - Chr2:79710248-79710267 None:intergenic 70.0%
GGTCTCCCTGCAGAAGCCCC+CGG + Chr2:79710249-79710268 MsG0280011110.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 79709776 79712689 79709776 ID=MsG0280011110.01;Name=MsG0280011110.01
Chr2 mRNA 79709776 79712689 79709776 ID=MsG0280011110.01.T01;Parent=MsG0280011110.01;Name=MsG0280011110.01.T01;_AED=0.43;_eAED=0.43;_QI=0|0|0|1|0.75|0.8|5|0|260
Chr2 exon 79709776 79709821 79709776 ID=MsG0280011110.01.T01:exon:10031;Parent=MsG0280011110.01.T01
Chr2 exon 79710262 79710422 79710262 ID=MsG0280011110.01.T01:exon:10032;Parent=MsG0280011110.01.T01
Chr2 exon 79711819 79712151 79711819 ID=MsG0280011110.01.T01:exon:10033;Parent=MsG0280011110.01.T01
Chr2 exon 79712275 79712391 79712275 ID=MsG0280011110.01.T01:exon:10034;Parent=MsG0280011110.01.T01
Chr2 exon 79712564 79712689 79712564 ID=MsG0280011110.01.T01:exon:10035;Parent=MsG0280011110.01.T01
Chr2 CDS 79709776 79709821 79709776 ID=MsG0280011110.01.T01:cds;Parent=MsG0280011110.01.T01
Chr2 CDS 79710262 79710422 79710262 ID=MsG0280011110.01.T01:cds;Parent=MsG0280011110.01.T01
Chr2 CDS 79711819 79712151 79711819 ID=MsG0280011110.01.T01:cds;Parent=MsG0280011110.01.T01
Chr2 CDS 79712275 79712391 79712275 ID=MsG0280011110.01.T01:cds;Parent=MsG0280011110.01.T01
Chr2 CDS 79712564 79712689 79712564 ID=MsG0280011110.01.T01:cds;Parent=MsG0280011110.01.T01
Gene Sequence

>MsG0280011110.01.T01

ATGCTTCGTAACCGCAATTTCACTCTTCGTCATACTCTTAGAGAGGAAGCCCCCGGTTTTCTCAAAGCTCCCGGCGGTGCACCAGCGAACGTCGCCATCGCTGTTTCCCGATTAGGAGGCAAAGCTGCCTTCGTCGGGAAACTAGGCGATGACGAGTTCGGTCACATGCTCGTCGGGATCTTAAAGGAAACGGTGTGGTCGCAGAAGGCAAAAGTTTTCCACTATGGATCCATAAGCTTGATTGTGGAGCCATGTAGATCAGCACACTTGAAGGCAATGGAAGTTGCCAAAGAAGCTGGCTGCCTTCTCTCCTATGATCCTAACCTCCGCCTACCACTGTGGCCCTCAGCGGAAGAAGCTCGCAAGCAAATACTGAGTATCTGGGAAAAGGCTGATTTGATCAAGGTTAGTGATAATGAGCTGGAGTTCCTGACTGGAAGTGACAAAATTGATGATGCTACTGCTTTGACATTGTGGCACCCAAATTTGAAGTTGCTCCTTGTCACTCTTGGTGAACATGGCGCAAGATACTACACCAAGAATTTTCATGGACAAGTAGATGCATTCAAAGTCAATACAGTTGATACAACTGGTGCCGGTGATTCCTTTGTTGGTGCTTTATTGGCCAAGATTGTTGATGATCAGGCCATATTAGAAGATGAATCAAAGTTAAGAGAAGTACTCAAGTTTGCAAATGCATGTGGAGCAATCACAACTACTAAAAAGGGAGCAATTCCTGCTCTTCCCAAGGAGGAGGATGTACTGAACCTGATCAAAGCATAG

Protein sequence

>MsG0280011110.01.T01

MLRNRNFTLRHTLREEAPGFLKAPGGAPANVAIAVSRLGGKAAFVGKLGDDEFGHMLVGILKETVWSQKAKVFHYGSISLIVEPCRSAHLKAMEVAKEAGCLLSYDPNLRLPLWPSAEEARKQILSIWEKADLIKVSDNELEFLTGSDKIDDATALTLWHPNLKLLLVTLGEHGARYYTKNFHGQVDAFKVNTVDTTGAGDSFVGALLAKIVDDQAILEDESKLREVLKFANACGAITTTKKGAIPALPKEEDVLNLIKA*