AlfalfaGEDB | MsG0480021207.01

M. sativa cultivar ZhongmuNo.1 / MsG0480021207.01

KEGG: K03527
GO: GO:0019288 GO:0046872 GO:0050992 GO:0051745
PFAM: PF02401

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021207.01.T01	XP_013456365.1	98.884	448	5	0	1	448	1	448	0	927

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021207.01.T01	Q94B35	77.124	459	89	3	5	448	8	465	0	746

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021207.01.T01	A0A072UM06	98.884	448	5	0	1	448	1	448	0.0	927

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047883.01	MsG0480021207.01	0.824756	6.792321e-54	6.072402e-51
MsG0080047884.01	MsG0480021207.01	0.837039	6.576427e-57	8.439042e-54
MsG0080047989.01	MsG0480021207.01	0.827538	1.480761e-54	1.433595e-51
MsG0080048016.01	MsG0480021207.01	0.835180	1.949726e-56	2.365778e-53
MsG0080048068.01	MsG0480021207.01	0.818010	2.449560e-52	1.812072e-49
MsG0080048085.01	MsG0480021207.01	0.820261	7.529299e-53	5.928478e-50
MsG0080048191.01	MsG0480021207.01	0.820618	6.236590e-53	4.958935e-50
MsG0080048273.01	MsG0480021207.01	0.810088	1.371638e-50	8.192097e-48
MsG0080048505.01	MsG0480021207.01	0.844732	6.302407e-59	1.026958e-55
MsG0080048528.01	MsG0480021207.01	0.845804	3.232038e-59	5.450826e-56

Showing 1 to 10 of 906 entries

Previous1 2 3 4 5…91Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021207.01.T01	MTR_4g069030	98.884	448	5	0	1	448	1	448	0.0	927
MsG0480021207.01.T01	MTR_4g069070	87.723	448	54	1	1	448	1	447	0.0	822
MsG0480021207.01.T01	MTR_1g090787	77.536	138	31	0	112	249	92	229	1.54e-69	221

Showing 1 to 3 of 3 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021207.01.T01	AT4G34350	77.124	459	89	3	5	448	8	465	0.0	746

Showing 1 to 1 of 1 entries

Previous1Next

Find 121 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGGTTTGAGTATACA+TGG	0.492239	4:+55193757	MsG0480021207.01.T01:CDS
AAAGAAAACTTTCTACCAAA+GGG	0.517497	4:+55195856	MsG0480021207.01.T01:CDS
AAATAGAGAACACGAGTTTG+CGG	0.512910	4:+55192500	MsG0480021207.01.T01:five_prime_UTR
AAATCAGACAACAATGCTCA+AGG	0.577136	4:+55195120	MsG0480021207.01.T01:CDS
AAATGCCTCTCTGGTTGAAC+TGG	0.377526	4:-55194945	None:intergenic
AAATGGGTTTGAGTATACAT+GGG	0.586456	4:+55193758	MsG0480021207.01.T01:CDS
AACGCGGAATTCCTTCTTAC+TGG	0.255913	4:+55195648	MsG0480021207.01.T01:CDS
AACGGACGGAGAAGAGTTTG+CGG	0.566321	4:-55192685	None:intergenic
AACTTGCCCGTGGGTTTCAA+AGG	0.489241	4:+55194535	MsG0480021207.01.T01:CDS
AAGGGAGAGACTGAAGAGAT+CGG	0.626047	4:+55195139	MsG0480021207.01.T01:CDS

Showing 1 to 10 of 121 entries

Previous1 2 3 4 5…13Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAACTAACAAGAGTGGA+AGG	-	Chr4:55195971-55195990	None:intergenic	30.0%
AAATAAGTCAATCCAAACAG+AGG	+	Chr4:55193428-55193447	MsG0480021207.01.T01:intron	30.0%
AATTGTGAAAAATATGGCAG+AGG	+	Chr4:55194778-55194797	MsG0480021207.01.T01:CDS	30.0%
AGAATATTCCTATTGGAGAA+GGG	+	Chr4:55194399-55194418	MsG0480021207.01.T01:CDS	30.0%
ATAAGTTTATCCATCAAGAG+AGG	+	Chr4:55194069-55194088	MsG0480021207.01.T01:intron	30.0%
ATGGATCTTATGTTAGTTGT+TGG	+	Chr4:55195578-55195597	MsG0480021207.01.T01:CDS	30.0%
ATGGATGATCCTAAATAGAT+TGG	-	Chr4:55196428-55196447	None:intergenic	30.0%
ATGTTTACTGTATCAGATCT+TGG	-	Chr4:55195756-55195775	None:intergenic	30.0%
ATTTCCATGATTTGACTAAG+AGG	-	Chr4:55194012-55194031	None:intergenic	30.0%
CAAAGGGGATCTTATAAAAA+GGG	+	Chr4:55194197-55194216	MsG0480021207.01.T01:intron	30.0%

Showing 1 to 10 of 236 entries

Previous1 2 3 4 5…24Next

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	55192488	55196509	55192488	ID=MsG0480021207.01;Name=MsG0480021207.01
Chr4	mRNA	55192488	55196509	55192488	ID=MsG0480021207.01.T01;Parent=MsG0480021207.01;Name=MsG0480021207.01.T01;_AED=0.29;_eAED=0.29;_QI=120\|1\|1\|1\|1\|1\|10\|264\|449
Chr4	exon	55192488	55192833	55192488	ID=MsG0480021207.01.T01:exon:6672;Parent=MsG0480021207.01.T01
Chr4	exon	55193733	55193929	55193733	ID=MsG0480021207.01.T01:exon:6673;Parent=MsG0480021207.01.T01
Chr4	exon	55194377	55194556	55194377	ID=MsG0480021207.01.T01:exon:6674;Parent=MsG0480021207.01.T01
Chr4	exon	55194668	55194799	55194668	ID=MsG0480021207.01.T01:exon:6675;Parent=MsG0480021207.01.T01
Chr4	exon	55194899	55194973	55194899	ID=MsG0480021207.01.T01:exon:6676;Parent=MsG0480021207.01.T01
Chr4	exon	55195055	55195160	55195055	ID=MsG0480021207.01.T01:exon:6677;Parent=MsG0480021207.01.T01
Chr4	exon	55195263	55195357	55195263	ID=MsG0480021207.01.T01:exon:6678;Parent=MsG0480021207.01.T01
Chr4	exon	55195539	55195724	55195539	ID=MsG0480021207.01.T01:exon:6679;Parent=MsG0480021207.01.T01
Chr4	exon	55195838	55195924	55195838	ID=MsG0480021207.01.T01:exon:6680;Parent=MsG0480021207.01.T01
Chr4	exon	55196180	55196509	55196180	ID=MsG0480021207.01.T01:exon:6681;Parent=MsG0480021207.01.T01
Chr4	five_prime_UTR	55192488	55192607	55192488	ID=MsG0480021207.01.T01:five_prime_utr;Parent=MsG0480021207.01.T01
Chr4	CDS	55192608	55192833	55192608	ID=MsG0480021207.01.T01:cds;Parent=MsG0480021207.01.T01
Chr4	CDS	55193733	55193929	55193733	ID=MsG0480021207.01.T01:cds;Parent=MsG0480021207.01.T01
Chr4	CDS	55194377	55194556	55194377	ID=MsG0480021207.01.T01:cds;Parent=MsG0480021207.01.T01
Chr4	CDS	55194668	55194799	55194668	ID=MsG0480021207.01.T01:cds;Parent=MsG0480021207.01.T01
Chr4	CDS	55194899	55194973	55194899	ID=MsG0480021207.01.T01:cds;Parent=MsG0480021207.01.T01
Chr4	CDS	55195055	55195160	55195055	ID=MsG0480021207.01.T01:cds;Parent=MsG0480021207.01.T01
Chr4	CDS	55195263	55195357	55195263	ID=MsG0480021207.01.T01:cds;Parent=MsG0480021207.01.T01
Chr4	CDS	55195539	55195724	55195539	ID=MsG0480021207.01.T01:cds;Parent=MsG0480021207.01.T01
Chr4	CDS	55195838	55195924	55195838	ID=MsG0480021207.01.T01:cds;Parent=MsG0480021207.01.T01
Chr4	CDS	55196180	55196245	55196180	ID=MsG0480021207.01.T01:cds;Parent=MsG0480021207.01.T01
Chr4	three_prime_UTR	55196246	55196509	55196246	ID=MsG0480021207.01.T01:three_prime_utr;Parent=MsG0480021207.01.T01

Gene Sequence

>MsG0480021207.01.T01

ATGGCTCTCTGTTCGAATCTTTGCCTACGTCTCCCCGCCACTCGCATCGACGTTCCTTCTCCGTCCACTTTCCGTTGCCGCAAACTCTTCTCCGTCCGTTGCTCTGCCGACGCCGATTTTGACCCAAAACTCTTCCGTAAGAATCTCACAAGAAGTGAGAATTATAACCGCAAAGGCTTTGGTCACAAGGAAGAGACCCTCAAACTCATGAATCGCGAGTACACAAGTGACATCATTAAGACTTTGAAGGAAAATGGGTTTGAGTATACATGGGGTAATGTCACTGTGATGCTAGCCGAATCCTTTGGATTTTGTTGGGGGGTTGAGAGGGCTGTTCAAATTGCTTATGAAGCCAGGAAACAATTTCCTGATGAAAAAATTTGGATTACCAATGAAATTATCCACAACCCAACTGTTAATAAGCGGCTAGAGGAGATGGAAGTGCAGAATATTCCTATTGGAGAAGGGAAGAAACAATTTGAGGTTGTCAACAAGGGTGATGTAGTCATACTGCCTGCTTTTGGAGCCGCAGTTGACGAGATGTTGACTTTGAGTGAGAAAAATGTTCAAATCGTTGATACAACTTGCCCGTGGGTTTCAAAGGTATGGAATGTTGTCGAAAAGCACAAAAAAGGAGACTATACCTCGATAATTCATGGTAAATATGCCCATGAGGAAACCGTAGCAACTGCATCTTTTGCTGGAAAATACATAATTGTGAAAAATATGGCAGAGGCTGAATATGTTTGCGACTATATTCTTGGTGGTGAATTTAATGGATCCAGTTCAACCAGAGAGGCATTTTTCGAGAAATTTAAATTTGCCCTTTCTAAGGGCTTTGATCCAGACAGTGACCTGGTAAAACTTGGCATTGCAAATCAGACAACAATGCTCAAGGGAGAGACTGAAGAGATCGGCAGACTAGTGGAGAGGACTATGATGCGTAAATATGGCGTGGAAAACGTTACTGAGCACTTCATAAGCTTCAACACAATTTGTGATGCTACTCAGGAGCGACAAGATGCTATTTACAAGCTGGTGGAGAAAGATATGGATCTTATGTTAGTTGTTGGTGGCTGGAACTCGAGCAACACATCACACCTACAAGAGATAGCCGAGGAACGCGGAATTCCTTCTTACTGGATTGACAGCGAGCAAAGAATTGGTCCAGGAAACAGAATAGCATACAAGTTGAATCATGGTGAGCTTGTGGAGAAAGAAAACTTTCTACCAAAGGGTCCATTAAGGATTGGTGTAACATCTGGTGCATCCACACCTGACAAAGTCGTGGAAGATGCTCTTATCAAGGTGTTTGATTTGAAAAGGGAAGAAGCATTACAACTCGTGTAA

Protein sequence

>MsG0480021207.01.T01

MALCSNLCLRLPATRIDVPSPSTFRCRKLFSVRCSADADFDPKLFRKNLTRSENYNRKGFGHKEETLKLMNREYTSDIIKTLKENGFEYTWGNVTVMLAESFGFCWGVERAVQIAYEARKQFPDEKIWITNEIIHNPTVNKRLEEMEVQNIPIGEGKKQFEVVNKGDVVILPAFGAAVDEMLTLSEKNVQIVDTTCPWVSKVWNVVEKHKKGDYTSIIHGKYAHEETVATASFAGKYIIVKNMAEAEYVCDYILGGEFNGSSSTREAFFEKFKFALSKGFDPDSDLVKLGIANQTTMLKGETEEIGRLVERTMMRKYGVENVTEHFISFNTICDATQERQDAIYKLVEKDMDLMLVVGGWNSSNTSHLQEIAEERGIPSYWIDSEQRIGPGNRIAYKLNHGELVEKENFLPKGPLRIGVTSGASTPDKVVEDALIKVFDLKREEALQLV*