Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000138.01.T01 | GAU15287.1 | 72.393 | 163 | 17 | 2 | 1 | 163 | 1 | 135 | 1.64E-74 | 229 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000138.01.T01 | I3SQ79 | 72.121 | 165 | 12 | 2 | 1 | 163 | 1 | 133 | 1.92e-74 | 228 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048560.01 | MsG0180000138.01 | -0.820598 | 6.303025e-53 | 5.008986e-50 |
| MsG0080048992.01 | MsG0180000138.01 | -0.823705 | 1.199356e-53 | 1.040703e-50 |
| MsG0080049043.01 | MsG0180000138.01 | 0.818513 | 1.885060e-52 | 1.413974e-49 |
| MsG0180000138.01 | MsG0180000719.01 | -0.804580 | 2.017652e-49 | 1.044113e-46 |
| MsG0180000138.01 | MsG0180001484.01 | -0.801270 | 9.744886e-49 | 4.634202e-46 |
| MsG0180000138.01 | MsG0180001614.01 | -0.809171 | 2.158978e-50 | 1.258623e-47 |
| MsG0180000138.01 | MsG0180002935.01 | 0.814573 | 1.438036e-51 | 9.684538e-49 |
| MsG0180000138.01 | MsG0180003605.01 | -0.805398 | 1.361201e-49 | 7.193946e-47 |
| MsG0180000138.01 | MsG0180003620.01 | 0.814868 | 1.237618e-51 | 8.400800e-49 |
| MsG0180000138.01 | MsG0180004301.01 | -0.826030 | 3.392898e-54 | 3.145153e-51 |
| MsG0180000138.01 | MsG0180004505.01 | -0.802912 | 4.479691e-49 | 2.221063e-46 |
| MsG0180000138.01 | MsG0180004586.01 | -0.807354 | 5.266561e-50 | 2.927000e-47 |
| MsG0180000138.01 | MsG0180004688.01 | 0.806360 | 8.544294e-50 | 4.628215e-47 |
| MsG0180000138.01 | MsG0180004957.01 | -0.829466 | 5.068273e-55 | 5.191429e-52 |
| MsG0180000138.01 | MsG0180005102.01 | 0.805764 | 1.140314e-49 | 6.083941e-47 |
| MsG0180000138.01 | MsG0180005516.01 | -0.817864 | 2.643694e-52 | 1.947888e-49 |
| MsG0180000138.01 | MsG0280006534.01 | -0.805929 | 1.052864e-49 | 5.641009e-47 |
| MsG0180000138.01 | MsG0280009864.01 | -0.820341 | 7.219613e-53 | 5.697139e-50 |
| MsG0180000138.01 | MsG0280010461.01 | -0.800670 | 1.292644e-48 | 6.054469e-46 |
| MsG0180000138.01 | MsG0380012444.01 | -0.804573 | 2.024989e-49 | 1.047707e-46 |
| MsG0180000138.01 | MsG0380014767.01 | 0.817833 | 2.685566e-52 | 1.977131e-49 |
| MsG0180000138.01 | MsG0380015530.01 | -0.840832 | 6.855017e-58 | 9.884864e-55 |
| MsG0180000138.01 | MsG0380016089.01 | -0.808442 | 3.091543e-50 | 1.767920e-47 |
| MsG0180000138.01 | MsG0380016476.01 | 0.807134 | 5.862820e-50 | 3.239690e-47 |
| MsG0180000138.01 | MsG0380016492.01 | -0.805666 | 1.195553e-49 | 6.362394e-47 |
| MsG0180000138.01 | MsG0380016531.01 | -0.802170 | 6.371533e-49 | 3.099805e-46 |
| MsG0180000138.01 | MsG0380016881.01 | -0.815558 | 8.695092e-52 | 6.014498e-49 |
| MsG0180000138.01 | MsG0380016889.01 | -0.801351 | 9.381552e-49 | 4.470489e-46 |
| MsG0180000138.01 | MsG0380018070.01 | 0.800661 | 1.298161e-48 | 6.078921e-46 |
| MsG0180000138.01 | MsG0480018088.01 | -0.803166 | 3.969149e-49 | 1.980711e-46 |
| MsG0180000138.01 | MsG0480019017.01 | 0.811943 | 5.436571e-51 | 3.410568e-48 |
| MsG0180000138.01 | MsG0480019861.01 | -0.821813 | 3.306544e-53 | 2.718843e-50 |
| MsG0180000138.01 | MsG0480020958.01 | 0.813320 | 2.717706e-51 | 1.769062e-48 |
| MsG0180000138.01 | MsG0480021151.01 | -0.818498 | 1.899315e-52 | 1.424107e-49 |
| MsG0180000138.01 | MsG0480021175.01 | 0.808966 | 2.388981e-50 | 1.384997e-47 |
| MsG0180000138.01 | MsG0480021327.01 | -0.800433 | 1.444760e-48 | 6.726388e-46 |
| MsG0180000138.01 | MsG0480021912.01 | -0.801365 | 9.320466e-49 | 4.443000e-46 |
| MsG0180000138.01 | MsG0480022296.01 | -0.815529 | 8.825170e-52 | 6.099658e-49 |
| MsG0180000138.01 | MsG0480022581.01 | -0.822249 | 2.620570e-53 | 2.181618e-50 |
| MsG0180000138.01 | MsG0480022637.01 | 0.821405 | 4.109871e-53 | 3.340463e-50 |
| MsG0180000138.01 | MsG0480023056.01 | -0.800725 | 1.259573e-48 | 5.907658e-46 |
| MsG0180000138.01 | MsG0480023125.01 | 0.803892 | 2.805866e-49 | 1.426656e-46 |
| MsG0180000138.01 | MsG0480023152.01 | -0.807867 | 4.097391e-50 | 2.307729e-47 |
| MsG0180000138.01 | MsG0480023855.01 | 0.818253 | 2.158654e-52 | 1.607533e-49 |
| MsG0180000138.01 | MsG0580024493.01 | -0.809403 | 1.925498e-50 | 1.129483e-47 |
| MsG0180000138.01 | MsG0580025573.01 | 0.813793 | 2.137862e-51 | 1.409630e-48 |
| MsG0180000138.01 | MsG0580026492.01 | 0.806476 | 8.076426e-50 | 4.387940e-47 |
| MsG0180000138.01 | MsG0580028899.01 | 0.827750 | 1.316690e-54 | 1.282666e-51 |
| MsG0180000138.01 | MsG0580029275.01 | 0.819914 | 9.042346e-53 | 7.051701e-50 |
| MsG0180000138.01 | MsG0680031062.01 | 0.816904 | 4.347077e-52 | 3.119824e-49 |
| MsG0180000138.01 | MsG0680034431.01 | -0.804671 | 1.931632e-49 | 1.001949e-46 |
| MsG0180000138.01 | MsG0780036586.01 | -0.848266 | 6.837911e-60 | 1.247846e-56 |
| MsG0180000138.01 | MsG0780038573.01 | -0.805799 | 1.121276e-49 | 5.987520e-47 |
| MsG0180000138.01 | MsG0780039382.01 | -0.820638 | 6.170925e-53 | 4.909416e-50 |
| MsG0180000138.01 | MsG0780039401.01 | -0.832161 | 1.107225e-55 | 1.227379e-52 |
| MsG0180000138.01 | MsG0780039662.01 | 0.812690 | 3.734816e-51 | 2.390513e-48 |
| MsG0180000138.01 | MsG0780039836.01 | -0.801644 | 8.169119e-49 | 3.921521e-46 |
| MsG0180000138.01 | MsG0780040321.01 | -0.816624 | 5.023337e-52 | 3.577605e-49 |
| MsG0180000138.01 | MsG0780040977.01 | 0.828361 | 9.382156e-55 | 9.304370e-52 |
| MsG0180000138.01 | MsG0780040991.01 | 0.813969 | 1.955503e-51 | 1.295533e-48 |
| MsG0180000138.01 | MsG0780041121.01 | -0.831282 | 1.822979e-55 | 1.969011e-52 |
| MsG0180000138.01 | MsG0780041531.01 | -0.817084 | 3.961988e-52 | 2.857410e-49 |
| MsG0180000138.01 | MsG0780041615.01 | -0.807326 | 5.338211e-50 | 2.964727e-47 |
| MsG0180000138.01 | MsG0880043261.01 | 0.803101 | 4.093702e-49 | 2.039335e-46 |
| MsG0180000138.01 | MsG0880043515.01 | -0.806905 | 6.554592e-50 | 3.600551e-47 |
| MsG0180000138.01 | MsG0880044968.01 | -0.803971 | 2.702632e-49 | 1.376870e-46 |
| MsG0180000138.01 | MsG0880045188.01 | -0.811791 | 5.868245e-51 | 3.666423e-48 |
| MsG0180000138.01 | MsG0880045369.01 | -0.808972 | 2.381578e-50 | 1.380942e-47 |
| MsG0180000138.01 | MsG0880045385.01 | -0.816508 | 5.332726e-52 | 3.785807e-49 |
| MsG0180000138.01 | MsG0880045755.01 | -0.803136 | 4.026719e-49 | 2.007810e-46 |
| MsG0180000138.01 | MsG0880045991.01 | 0.813333 | 2.698746e-51 | 1.757377e-48 |
| MsG0180000138.01 | MsG0880046469.01 | -0.806807 | 6.875626e-50 | 3.767397e-47 |
| MsG0180000138.01 | MsG0880046856.01 | -0.808711 | 2.707836e-50 | 1.559255e-47 |
| MsG0180000138.01 | MsG0880047251.01 | -0.826676 | 2.380373e-54 | 2.247541e-51 |
| MsG0180000138.01 | MsG0880047406.01 | -0.832001 | 1.212591e-55 | 1.338066e-52 |
| MsG0180000138.01 | MsG0880047542.01 | 0.801462 | 8.902862e-49 | 4.254217e-46 |
| MsG0180000138.01 | MsG0880047697.01 | 0.801080 | 1.066056e-48 | 5.045492e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000138.01.T01 | MTR_1g022395 | 72.121 | 165 | 12 | 2 | 1 | 163 | 1 | 133 | 4.87e-78 | 228 |
| MsG0180000138.01.T01 | MTR_3g111970 | 51.205 | 166 | 40 | 5 | 1 | 163 | 1 | 128 | 5.22e-47 | 150 |
| MsG0180000138.01.T01 | MTR_3g111970 | 49.673 | 153 | 36 | 5 | 1 | 150 | 1 | 115 | 1.21e-38 | 128 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000138.01.T01 | AT1G19530 | 32.716 | 162 | 58 | 4 | 1 | 161 | 1 | 112 | 2.74e-13 | 63.2 |
| MsG0180000138.01.T01 | AT1G19530 | 32.716 | 162 | 58 | 4 | 1 | 161 | 1 | 112 | 2.74e-13 | 63.2 |
Find 51 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGATGAAATTGATGCTTAT+TGG | 0.156482 | 1:-1945032 | MsG0180000138.01.T01:CDS |
| AATCATATGGTACCTGATTT+AGG | 0.175839 | 1:+1945210 | None:intergenic |
| CTGAATAGTCTTTGACAAAT+TGG | 0.206876 | 1:+1944966 | None:intergenic |
| GAACGTACTTGACACAAATT+TGG | 0.215908 | 1:-1943920 | MsG0180000138.01.T01:CDS |
| GTCAAGTACGTTCATATTAA+AGG | 0.224800 | 1:+1943930 | None:intergenic |
| CTGTTTCAGCCATACTTAAA+AGG | 0.239435 | 1:-1945071 | MsG0180000138.01.T01:intron |
| AGACTAAGAGTACTACAAAT+TGG | 0.249038 | 1:-1945348 | MsG0180000138.01.T01:five_prime_UTR |
| GCAAATCAACGTGTGTTTCT+TGG | 0.281985 | 1:-1943442 | MsG0180000138.01.T01:three_prime_UTR |
| CAATTTGTCAAAGACTATTC+AGG | 0.285232 | 1:-1944965 | MsG0180000138.01.T01:CDS |
| ACCACAATGCAATTTCTAAA+TGG | 0.294299 | 1:+1945307 | None:intergenic |
| CAGTTTCACGTTGCCAGTTT+GGG | 0.309436 | 1:-1943651 | MsG0180000138.01.T01:CDS |
| CTAAACATTAATTTCAAACT+TGG | 0.322769 | 1:+1944027 | None:intergenic |
| CAAGTTTGAAATTAATGTTT+AGG | 0.334583 | 1:-1944026 | MsG0180000138.01.T01:CDS |
| GCAGGTGGACTAAGAGTAAC+TGG | 0.334701 | 1:-1943728 | MsG0180000138.01.T01:intron |
| GCATGGGCAGATCCAACTTA+TGG | 0.351906 | 1:-1944911 | MsG0180000138.01.T01:intron |
| TCAAGTACGTTCATATTAAA+GGG | 0.359264 | 1:+1943931 | None:intergenic |
| ACAGTTTCACGTTGCCAGTT+TGG | 0.359415 | 1:-1943652 | MsG0180000138.01.T01:CDS |
| TCTTCAATTGATCCTAAATC+AGG | 0.362673 | 1:-1945222 | MsG0180000138.01.T01:intron |
| TTGGATGCAGCTTCCATCAT+TGG | 0.363993 | 1:+1943687 | None:intergenic |
| TCAATTTGTCGATCCCAAAC+TGG | 0.421196 | 1:+1943638 | None:intergenic |
| GGGTTCTCTTATGGCAGGAT+GGG | 0.445491 | 1:-1945250 | MsG0180000138.01.T01:CDS |
| TACTTGCCACTTTCCAGCAT+GGG | 0.450466 | 1:-1944927 | MsG0180000138.01.T01:CDS |
| GACTAAGAGTACTACAAATT+GGG | 0.460520 | 1:-1945347 | MsG0180000138.01.T01:five_prime_UTR |
| TCTGAATGAGCCACCAATGA+TGG | 0.467236 | 1:-1943700 | MsG0180000138.01.T01:CDS |
| CCATGCCCGTGGCCCACGTA+AGG | 0.471373 | 1:-1943957 | MsG0180000138.01.T01:CDS |
| GGGTCCCTTACGTGGGCCAC+GGG | 0.472849 | 1:+1943952 | None:intergenic |
| GGGGTCCCTTACGTGGGCCA+CGG | 0.474803 | 1:+1943951 | None:intergenic |
| CCTTACGTGGGCCACGGGCA+TGG | 0.492032 | 1:+1943957 | None:intergenic |
| GGTTCTCTTATGGCAGGATG+GGG | 0.492223 | 1:-1945249 | MsG0180000138.01.T01:CDS |
| CAATCACTAACTTCATCTAC+GGG | 0.495529 | 1:+1943613 | None:intergenic |
| GAAATCAAAGAAGAAGATAG+AGG | 0.499005 | 1:-1945010 | MsG0180000138.01.T01:CDS |
| TAAGTTGGATCTGCCCATGC+TGG | 0.504399 | 1:+1944914 | None:intergenic |
| GATGCAGCTTCCATCATTGG+TGG | 0.505474 | 1:+1943690 | None:intergenic |
| TGGGTTCTCTTATGGCAGGA+TGG | 0.507870 | 1:-1945251 | MsG0180000138.01.T01:CDS |
| ACAAATTGGAAATTGCTGTA+AGG | 0.512610 | 1:+1944980 | None:intergenic |
| TCAATCACTAACTTCATCTA+CGG | 0.513170 | 1:+1943612 | None:intergenic |
| AAACTGTGCTGCATACTTGT+TGG | 0.515262 | 1:+1943668 | None:intergenic |
| TATTAAAGGGGTCCCTTACG+TGG | 0.530982 | 1:+1943944 | None:intergenic |
| AAAATGGGTTCTCTTATGGC+AGG | 0.548408 | 1:-1945255 | MsG0180000138.01.T01:CDS |
| CATGCCCGTGGCCCACGTAA+GGG | 0.568293 | 1:-1943956 | MsG0180000138.01.T01:CDS |
| GGTAGCCGCAAACCATAAGT+TGG | 0.578815 | 1:+1944899 | None:intergenic |
| CTACTTGCCACTTTCCAGCA+TGG | 0.590312 | 1:-1944928 | MsG0180000138.01.T01:CDS |
| TGCTGGAAAGTGGCAAGTAG+AGG | 0.605008 | 1:+1944931 | None:intergenic |
| TCCATTTAGAAATTGCATTG+TGG | 0.619587 | 1:-1945308 | MsG0180000138.01.T01:five_prime_UTR |
| GATCTGCCCATGCTGGAAAG+TGG | 0.635937 | 1:+1944921 | None:intergenic |
| GACATAAATATATACATACA+AGG | 0.637376 | 1:+1943563 | None:intergenic |
| GAAGTCAATGACCATGCCCG+TGG | 0.649977 | 1:-1943968 | MsG0180000138.01.T01:CDS |
| CAAGTACGTTCATATTAAAG+GGG | 0.651488 | 1:+1943932 | None:intergenic |
| ATTAAAGGGGTCCCTTACGT+GGG | 0.678500 | 1:+1943945 | None:intergenic |
| CAGGTGGACTAAGAGTAACT+GGG | 0.688506 | 1:-1943727 | MsG0180000138.01.T01:CDS |
| AATCACTAACTTCATCTACG+GGG | 0.796732 | 1:+1943614 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACAAATCATATATATATTT+CGG | + | Chr1:1944522-1944541 | None:intergenic | 10.0% |
| !! | TGAAATAAAAACATTAAAAT+TGG | + | Chr1:1944660-1944679 | None:intergenic | 10.0% |
| !!! | ATTTATTTTTTTGGAAAATT+TGG | + | Chr1:1943860-1943879 | None:intergenic | 10.0% |
| !! | AATAAATAAAATACATACGA+AGG | - | Chr1:1943873-1943892 | MsG0180000138.01.T01:intron | 15.0% |
| !! | TATAGTATTATATATAGTGT+TGG | + | Chr1:1944213-1944232 | None:intergenic | 15.0% |
| !!! | AAATACATCTTTAATTTCAT+TGG | - | Chr1:1944028-1944047 | MsG0180000138.01.T01:CDS | 15.0% |
| !!! | TTAATGTTTTTATTTCATGA+TGG | - | Chr1:1944663-1944682 | MsG0180000138.01.T01:intron | 15.0% |
| !!! | TTTTACACACAATATTAAAA+TGG | + | Chr1:1944631-1944650 | None:intergenic | 15.0% |
| !! | AATCATTATTAGAACTTAGA+CGG | - | Chr1:1943604-1943623 | MsG0180000138.01.T01:three_prime_UTR | 20.0% |
| !! | CATATGCATAATTCATATAT+AGG | + | Chr1:1944954-1944973 | None:intergenic | 20.0% |
| !! | CTAAACATTAATTTCAAACT+TGG | + | Chr1:1944703-1944722 | None:intergenic | 20.0% |
| !! | CTATATATGAATTATGCATA+TGG | - | Chr1:1944952-1944971 | MsG0180000138.01.T01:CDS | 20.0% |
| !! | GACATAAATATATACATACA+AGG | + | Chr1:1945167-1945186 | None:intergenic | 20.0% |
| !! | TGATTCTATACAGAAAAAAT+GGG | - | Chr1:1943457-1943476 | MsG0180000138.01.T01:three_prime_UTR | 20.0% |
| !! | TTGATTCTATACAGAAAAAA+TGG | - | Chr1:1943456-1943475 | MsG0180000138.01.T01:three_prime_UTR | 20.0% |
| !!! | AAGTATCGTTATTAATCATA+TGG | + | Chr1:1943533-1943552 | None:intergenic | 20.0% |
| !!! | CAAGTTTGAAATTAATGTTT+AGG | - | Chr1:1944701-1944720 | MsG0180000138.01.T01:intron | 20.0% |
| !!! | CTACTATTTTCTTTTTCTTT+TGG | + | Chr1:1944181-1944200 | None:intergenic | 20.0% |
| !!! | TATTAATTTAATTTGAGTGC+AGG | - | Chr1:1944981-1945000 | MsG0180000138.01.T01:CDS | 20.0% |
| ! | AAGATGAAATTGATGCTTAT+TGG | - | Chr1:1943695-1943714 | MsG0180000138.01.T01:CDS | 25.0% |
| ! | ACACTTGAAAAAATCAACAA+GGG | - | Chr1:1944149-1944168 | MsG0180000138.01.T01:intron | 25.0% |
| ! | ACTATAATAATTGGAAGAGT+AGG | + | Chr1:1944867-1944886 | None:intergenic | 25.0% |
| ! | ATATATTTCGGATTTCACTT+AGG | + | Chr1:1944510-1944529 | None:intergenic | 25.0% |
| ! | GAACCCTAATAATTGTTAAT+TGG | + | Chr1:1943946-1943965 | None:intergenic | 25.0% |
| ! | GCTCCAATTAACAATTATTA+GGG | - | Chr1:1943940-1943959 | MsG0180000138.01.T01:CDS | 25.0% |
| ! | TACACTTGAAAAAATCAACA+AGG | - | Chr1:1944148-1944167 | MsG0180000138.01.T01:intron | 25.0% |
| ! | TCAAGTACGTTCATATTAAA+GGG | + | Chr1:1944799-1944818 | None:intergenic | 25.0% |
| ! | TGCTCCAATTAACAATTATT+AGG | - | Chr1:1943939-1943958 | MsG0180000138.01.T01:CDS | 25.0% |
| !! | AGTATTATATATAGTGTTGG+TGG | + | Chr1:1944210-1944229 | None:intergenic | 25.0% |
| !! | TAGTTTTCTAATATGCAAGA+AGG | + | Chr1:1944463-1944482 | None:intergenic | 25.0% |
| !!! | GTATTATATATAGTGTTGGT+GGG | + | Chr1:1944209-1944228 | None:intergenic | 25.0% |
| !!! | TATTATATATAGTGTTGGTG+GGG | + | Chr1:1944208-1944227 | None:intergenic | 25.0% |
| !!! | TTTTTTTGGAAAATTTGGTG+TGG | + | Chr1:1943855-1943874 | None:intergenic | 25.0% |
| AACTTATCAACAAAAATGGC+TGG | - | Chr1:1944833-1944852 | MsG0180000138.01.T01:intron | 30.0% | |
| AATATGCAAGAAGGACTAAA+AGG | + | Chr1:1944454-1944473 | None:intergenic | 30.0% | |
| AATCATATGGTACCTGATTT+AGG | + | Chr1:1943520-1943539 | None:intergenic | 30.0% | |
| AATGAAATGTCAGAGAAAGT+TGG | - | Chr1:1943906-1943925 | MsG0180000138.01.T01:CDS | 30.0% | |
| ACAAATTGGAAATTGCTGTA+AGG | + | Chr1:1943750-1943769 | None:intergenic | 30.0% | |
| ACCACAATGCAATTTCTAAA+TGG | + | Chr1:1943423-1943442 | None:intergenic | 30.0% | |
| ACGCGACAAACATTAATTAT+TGG | - | Chr1:1944365-1944384 | MsG0180000138.01.T01:intron | 30.0% | |
| ACTCAAACACACAAGAAAAA+TGG | + | Chr1:1944086-1944105 | None:intergenic | 30.0% | |
| AGACGGTACTTATATTTATG+AGG | - | Chr1:1943621-1943640 | MsG0180000138.01.T01:exon | 30.0% | |
| CAAGTACGTTCATATTAAAG+GGG | + | Chr1:1944798-1944817 | None:intergenic | 30.0% | |
| CAATTTGTCAAAGACTATTC+AGG | - | Chr1:1943762-1943781 | MsG0180000138.01.T01:intron | 30.0% | |
| CTGAATAGTCTTTGACAAAT+TGG | + | Chr1:1943764-1943783 | None:intergenic | 30.0% | |
| GAAATCAAAGAAGAAGATAG+AGG | - | Chr1:1943717-1943736 | MsG0180000138.01.T01:CDS | 30.0% | |
| GACGGTACTTATATTTATGA+GGG | - | Chr1:1943622-1943641 | MsG0180000138.01.T01:exon | 30.0% | |
| GAGCAACTTATCAACAAAAA+TGG | - | Chr1:1944829-1944848 | MsG0180000138.01.T01:intron | 30.0% | |
| GTCAAGTACGTTCATATTAA+AGG | + | Chr1:1944800-1944819 | None:intergenic | 30.0% | |
| TCAATCACTAACTTCATCTA+CGG | + | Chr1:1945118-1945137 | None:intergenic | 30.0% | |
| TCCATTTAGAAATTGCATTG+TGG | - | Chr1:1943419-1943438 | MsG0180000138.01.T01:three_prime_UTR | 30.0% | |
| TCTTCAATTGATCCTAAATC+AGG | - | Chr1:1943505-1943524 | MsG0180000138.01.T01:three_prime_UTR | 30.0% | |
| TGTGCTTAGTATTTATGTTG+CGG | - | Chr1:1943574-1943593 | MsG0180000138.01.T01:three_prime_UTR | 30.0% | |
| TTACTCTAGTAGAAGAATAC+TGG | + | Chr1:1944334-1944353 | None:intergenic | 30.0% | |
| TTTCTTGTGTGTTTGAGTAA+TGG | - | Chr1:1944088-1944107 | MsG0180000138.01.T01:intron | 30.0% | |
| ! | AGAAAAAATGGGTTCTCTTA+TGG | - | Chr1:1943468-1943487 | MsG0180000138.01.T01:three_prime_UTR | 30.0% |
| ! | TTTCATCTTTTGTAAGTGAC+TGG | + | Chr1:1943684-1943703 | None:intergenic | 30.0% |
| !! | AGACTAAGAGTACTACAAAT+TGG | - | Chr1:1943379-1943398 | MsG0180000138.01.T01:three_prime_UTR | 30.0% |
| !! | GACTAAGAGTACTACAAATT+GGG | - | Chr1:1943380-1943399 | MsG0180000138.01.T01:three_prime_UTR | 30.0% |
| !! | TAATTTAATTTGAGTGCAGG+TGG | - | Chr1:1944984-1945003 | MsG0180000138.01.T01:CDS | 30.0% |
| AATCACTAACTTCATCTACG+GGG | + | Chr1:1945116-1945135 | None:intergenic | 35.0% | |
| CAATCACTAACTTCATCTAC+GGG | + | Chr1:1945117-1945136 | None:intergenic | 35.0% | |
| CTGTTTCAGCCATACTTAAA+AGG | - | Chr1:1943656-1943675 | MsG0180000138.01.T01:CDS | 35.0% | |
| GAACGTACTTGACACAAATT+TGG | - | Chr1:1944807-1944826 | MsG0180000138.01.T01:intron | 35.0% | |
| TATTTCGGATTTCACTTAGG+TGG | + | Chr1:1944507-1944526 | None:intergenic | 35.0% | |
| !! | TGAAACTTCTTTTCAGGATC+AGG | + | Chr1:1944739-1944758 | None:intergenic | 35.0% |
| !! | TGACTAAGAGCACTACAATT+TGG | - | Chr1:1944236-1944255 | MsG0180000138.01.T01:intron | 35.0% |
| !! | TGACTGGTTCCTTTTAAGTA+TGG | + | Chr1:1943668-1943687 | None:intergenic | 35.0% |
| !!! | GACTTCTGAAACTTCTTTTC+AGG | + | Chr1:1944745-1944764 | None:intergenic | 35.0% |
| !!! | TTTTGGAAAATTTGGTGTGG+CGG | + | Chr1:1943852-1943871 | None:intergenic | 35.0% |
| AAAAGAAGAAGCAGACAGAG+TGG | + | Chr1:1944062-1944081 | None:intergenic | 40.0% | |
| AAACTGTGCTGCATACTTGT+TGG | + | Chr1:1945062-1945081 | None:intergenic | 40.0% | |
| ATGTTTGTCGCGTCTCAAAT+AGG | + | Chr1:1944358-1944377 | None:intergenic | 40.0% | |
| CAGATCCAACTTATGGTTTG+CGG | - | Chr1:1943823-1943842 | MsG0180000138.01.T01:intron | 40.0% | |
| CCAAAAACGAACAACGCTAT+TGG | + | Chr1:1945223-1945242 | None:intergenic | 40.0% | |
| GCAAATCAACGTGTGTTTCT+TGG | - | Chr1:1945285-1945304 | MsG0180000138.01.T01:five_prime_UTR | 40.0% | |
| TCAATTTGTCGATCCCAAAC+TGG | + | Chr1:1945092-1945111 | None:intergenic | 40.0% | |
| ! | AAAATGGGTTCTCTTATGGC+AGG | - | Chr1:1943472-1943491 | MsG0180000138.01.T01:three_prime_UTR | 40.0% |
| ! | CCAATAGCGTTGTTCGTTTT+TGG | - | Chr1:1945220-1945239 | MsG0180000138.01.T01:intron | 40.0% |
| ACAGTTTCACGTTGCCAGTT+TGG | - | Chr1:1945075-1945094 | MsG0180000138.01.T01:intron | 45.0% | |
| ATTAAAGGGGTCCCTTACGT+GGG | + | Chr1:1944785-1944804 | None:intergenic | 45.0% | |
| CAGTTTCACGTTGCCAGTTT+GGG | - | Chr1:1945076-1945095 | MsG0180000138.01.T01:intron | 45.0% | |
| TATTAAAGGGGTCCCTTACG+TGG | + | Chr1:1944786-1944805 | None:intergenic | 45.0% | |
| TCTGAATGAGCCACCAATGA+TGG | - | Chr1:1945027-1945046 | MsG0180000138.01.T01:CDS | 45.0% | |
| TTGGATGCAGCTTCCATCAT+TGG | + | Chr1:1945043-1945062 | None:intergenic | 45.0% | |
| !! | CAGGTGGACTAAGAGTAACT+GGG | - | Chr1:1945000-1945019 | MsG0180000138.01.T01:CDS | 45.0% |
| !! | TACTTGCCACTTTCCAGCAT+GGG | - | Chr1:1943800-1943819 | MsG0180000138.01.T01:intron | 45.0% |
| !! | TTATATATAACTATAATAAT+TGG | + | Chr1:1944876-1944895 | None:intergenic | 5.0% |
| !! | TTATTATAGTTATATATAAT+TGG | - | Chr1:1944877-1944896 | MsG0180000138.01.T01:intron | 5.0% |
| !!! | ATGTATTTTATTTATTTTTT+TGG | + | Chr1:1943869-1943888 | None:intergenic | 5.0% |
| AAGAAGCAGACAGAGTGGTG+GGG | + | Chr1:1944057-1944076 | None:intergenic | 50.0% | |
| AGAAGAAGCAGACAGAGTGG+TGG | + | Chr1:1944059-1944078 | None:intergenic | 50.0% | |
| GAAGAAGCAGACAGAGTGGT+GGG | + | Chr1:1944058-1944077 | None:intergenic | 50.0% | |
| GATGCAGCTTCCATCATTGG+TGG | + | Chr1:1945040-1945059 | None:intergenic | 50.0% | |
| GCATGGGCAGATCCAACTTA+TGG | - | Chr1:1943816-1943835 | MsG0180000138.01.T01:intron | 50.0% | |
| GGGTTCTCTTATGGCAGGAT+GGG | - | Chr1:1943477-1943496 | MsG0180000138.01.T01:three_prime_UTR | 50.0% | |
| GGTAGCCGCAAACCATAAGT+TGG | + | Chr1:1943831-1943850 | None:intergenic | 50.0% | |
| GGTTCTCTTATGGCAGGATG+GGG | - | Chr1:1943478-1943497 | MsG0180000138.01.T01:three_prime_UTR | 50.0% | |
| TGCTGGAAAGTGGCAAGTAG+AGG | + | Chr1:1943799-1943818 | None:intergenic | 50.0% | |
| TGGGTTCTCTTATGGCAGGA+TGG | - | Chr1:1943476-1943495 | MsG0180000138.01.T01:three_prime_UTR | 50.0% | |
| ! | TAAGTTGGATCTGCCCATGC+TGG | + | Chr1:1943816-1943835 | None:intergenic | 50.0% |
| !! | CTACTTGCCACTTTCCAGCA+TGG | - | Chr1:1943799-1943818 | MsG0180000138.01.T01:intron | 50.0% |
| !! | GCAGGTGGACTAAGAGTAAC+TGG | - | Chr1:1944999-1945018 | MsG0180000138.01.T01:CDS | 50.0% |
| GAAGTCAATGACCATGCCCG+TGG | - | Chr1:1944759-1944778 | MsG0180000138.01.T01:intron | 55.0% | |
| GATCTGCCCATGCTGGAAAG+TGG | + | Chr1:1943809-1943828 | None:intergenic | 55.0% | |
| CATGCCCGTGGCCCACGTAA+GGG | - | Chr1:1944771-1944790 | MsG0180000138.01.T01:intron | 65.0% | |
| CCATGCCCGTGGCCCACGTA+AGG | - | Chr1:1944770-1944789 | MsG0180000138.01.T01:intron | 70.0% | |
| CCTTACGTGGGCCACGGGCA+TGG | + | Chr1:1944773-1944792 | None:intergenic | 70.0% | |
| GGGGTCCCTTACGTGGGCCA+CGG | + | Chr1:1944779-1944798 | None:intergenic | 70.0% | |
| GGGTCCCTTACGTGGGCCAC+GGG | + | Chr1:1944778-1944797 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 1943375 | 1945374 | 1943375 | ID=MsG0180000138.01;Name=MsG0180000138.01 |
| Chr1 | mRNA | 1943375 | 1945374 | 1943375 | ID=MsG0180000138.01.T01;Parent=MsG0180000138.01;Name=MsG0180000138.01.T01;_AED=0.45;_eAED=0.48;_QI=100|0.66|0.5|1|1|1|4|263|164 |
| Chr1 | exon | 1945223 | 1945374 | 1945223 | ID=MsG0180000138.01.T01:exon:6886;Parent=MsG0180000138.01.T01 |
| Chr1 | exon | 1944912 | 1945084 | 1944912 | ID=MsG0180000138.01.T01:exon:6887;Parent=MsG0180000138.01.T01 |
| Chr1 | exon | 1943895 | 1944055 | 1943895 | ID=MsG0180000138.01.T01:exon:6888;Parent=MsG0180000138.01.T01 |
| Chr1 | exon | 1943375 | 1943746 | 1943375 | ID=MsG0180000138.01.T01:exon:6889;Parent=MsG0180000138.01.T01 |
| Chr1 | five_prime_UTR | 1945275 | 1945374 | 1945275 | ID=MsG0180000138.01.T01:five_prime_utr;Parent=MsG0180000138.01.T01 |
| Chr1 | CDS | 1945223 | 1945274 | 1945223 | ID=MsG0180000138.01.T01:cds;Parent=MsG0180000138.01.T01 |
| Chr1 | CDS | 1944912 | 1945084 | 1944912 | ID=MsG0180000138.01.T01:cds;Parent=MsG0180000138.01.T01 |
| Chr1 | CDS | 1943895 | 1944055 | 1943895 | ID=MsG0180000138.01.T01:cds;Parent=MsG0180000138.01.T01 |
| Chr1 | CDS | 1943638 | 1943746 | 1943638 | ID=MsG0180000138.01.T01:cds;Parent=MsG0180000138.01.T01 |
| Chr1 | three_prime_UTR | 1943375 | 1943637 | 1943375 | ID=MsG0180000138.01.T01:three_prime_utr;Parent=MsG0180000138.01.T01 |
| Gene Sequence |
| Protein sequence |
