Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029382.01.T01 | XP_003616869.1 | 90 | 440 | 30 | 1 | 1 | 440 | 1 | 426 | 0 | 790 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029382.01.T01 | Q84JG2 | 50.58 | 431 | 179 | 8 | 36 | 438 | 39 | 463 | 2.04E-134 | 397 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029382.01.T01 | G7KH84 | 90.000 | 440 | 30 | 1 | 1 | 440 | 1 | 426 | 0.0 | 790 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029382.01.T01 | MTR_5g085170 | 90.000 | 440 | 30 | 1 | 1 | 440 | 1 | 426 | 0.0 | 790 |
| MsG0580029382.01.T01 | MTR_3g116120 | 85.084 | 476 | 35 | 3 | 1 | 440 | 1 | 476 | 0.0 | 779 |
| MsG0580029382.01.T01 | MTR_6g053260 | 77.091 | 275 | 18 | 4 | 1 | 275 | 1 | 230 | 3.04e-128 | 387 |
| MsG0580029382.01.T01 | MTR_6g053260 | 93.684 | 95 | 6 | 0 | 344 | 438 | 234 | 328 | 1.36e-48 | 177 |
| MsG0580029382.01.T01 | MTR_3g099000 | 33.220 | 295 | 133 | 7 | 35 | 267 | 6 | 298 | 2.61e-39 | 149 |
| MsG0580029382.01.T01 | MTR_4g069830 | 26.689 | 296 | 158 | 9 | 39 | 280 | 133 | 423 | 1.81e-22 | 100 |
| MsG0580029382.01.T01 | MTR_4g069830 | 26.689 | 296 | 158 | 9 | 39 | 280 | 133 | 423 | 1.86e-22 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029382.01.T01 | AT2G33610 | 50.580 | 431 | 179 | 8 | 36 | 438 | 39 | 463 | 2.08e-135 | 397 |
| MsG0580029382.01.T01 | AT1G21700 | 23.725 | 510 | 289 | 16 | 23 | 436 | 158 | 663 | 8.97e-37 | 144 |
| MsG0580029382.01.T01 | AT2G47620 | 28.106 | 491 | 250 | 15 | 39 | 429 | 7 | 494 | 4.86e-35 | 136 |
| MsG0580029382.01.T01 | AT2G47620 | 34.559 | 272 | 128 | 9 | 39 | 263 | 7 | 275 | 5.77e-32 | 126 |
| MsG0580029382.01.T01 | AT4G34430 | 29.893 | 281 | 146 | 8 | 39 | 268 | 139 | 419 | 1.42e-21 | 98.2 |
| MsG0580029382.01.T01 | AT4G34430 | 29.893 | 281 | 146 | 8 | 39 | 268 | 139 | 419 | 1.45e-21 | 98.2 |
| MsG0580029382.01.T01 | AT4G34430 | 29.893 | 281 | 146 | 8 | 39 | 268 | 139 | 419 | 1.45e-21 | 98.2 |
| MsG0580029382.01.T01 | AT4G34430 | 29.893 | 281 | 146 | 8 | 39 | 268 | 139 | 419 | 1.45e-21 | 98.2 |
Find 98 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAAGCTATTACAAATTTC+GGG | 0.188443 | 5:+96175201 | MsG0580029382.01.T01:CDS |
| CTTGAAGCTATTACAAATTT+CGG | 0.191024 | 5:+96175200 | MsG0580029382.01.T01:CDS |
| GTTGGCGTCGCCAGAGGTTT+TGG | 0.205569 | 5:-96174634 | None:intergenic |
| GGCTGCTTTCCTTTCTGCTT+TGG | 0.311179 | 5:+96175427 | MsG0580029382.01.T01:CDS |
| TTTGTAAACCCTAGGGTTCT+TGG | 0.330782 | 5:-96174739 | None:intergenic |
| GTCAGTCATCAATTACTTTC+CGG | 0.330900 | 5:-96175840 | None:intergenic |
| GCTTTCCTTTCTGCTTTGGC+AGG | 0.337459 | 5:+96175431 | MsG0580029382.01.T01:CDS |
| CGCTCAGTAAACCTCTCATA+TGG | 0.352549 | 5:+96174922 | MsG0580029382.01.T01:CDS |
| CCTAGGGTTCTTGGAAGATT+CGG | 0.357797 | 5:-96174730 | None:intergenic |
| GGAGGCTCGACGGTTCTATT+TGG | 0.364466 | 5:-96174543 | None:intergenic |
| GGTTCTGGTAATGGGACTTC+CGG | 0.374955 | 5:-96174612 | None:intergenic |
| CTAGGGTTCTTGGAAGATTC+GGG | 0.380857 | 5:-96174729 | None:intergenic |
| AATGTGTCTCACACCTCTTA+TGG | 0.384773 | 5:+96175379 | MsG0580029382.01.T01:CDS |
| ACCGCCTCCGGTGGCGAAAC+CGG | 0.394595 | 5:+96174593 | MsG0580029382.01.T01:CDS |
| TTTACCAGACGCAACAGTTT+CGG | 0.399478 | 5:-96175345 | None:intergenic |
| TCTTCGTTTGCTCCAACTGC+TGG | 0.408427 | 5:-96175760 | None:intergenic |
| TCCGGTTTCGCCACCGGAGG+CGG | 0.412679 | 5:-96174594 | None:intergenic |
| ATCAATTACTTTCCGGTCGT+TGG | 0.415852 | 5:-96175833 | None:intergenic |
| TTACAAATTTCGGGGATGAT+TGG | 0.415906 | 5:+96175210 | MsG0580029382.01.T01:CDS |
| GCAGATTCTCTTAGCTTCAT+TGG | 0.416279 | 5:-96175009 | None:intergenic |
| CCTTTCTGCTTTGGCAGGGA+CGG | 0.421374 | 5:+96175436 | MsG0580029382.01.T01:CDS |
| ACGGATTTCGCATTCGTGAA+TGG | 0.432570 | 5:-96174700 | None:intergenic |
| AACACTGCAACCACCGCCTC+CGG | 0.442861 | 5:+96174581 | MsG0580029382.01.T01:CDS |
| AGGAGATTCTGTAGAATTTG+AGG | 0.449273 | 5:-96174973 | None:intergenic |
| TCTTGCTGCAATGTATTCCT+TGG | 0.449690 | 5:-96175542 | None:intergenic |
| GATGCTTCTGTTGCATCTGA+TGG | 0.455596 | 5:+96175563 | MsG0580029382.01.T01:CDS |
| TTCTACAGAATCTCCTTCTC+TGG | 0.459502 | 5:+96174980 | MsG0580029382.01.T01:CDS |
| AGGGTTGCTCATCAAGTTGT+TGG | 0.467288 | 5:+96175236 | MsG0580029382.01.T01:CDS |
| ATTCTCTTAGCTTCATTGGC+AGG | 0.470496 | 5:-96175005 | None:intergenic |
| AAAGCAGCCTGAGCCATGAT+AGG | 0.474193 | 5:-96175413 | None:intergenic |
| GATTCACATTCAGCATCAAC+GGG | 0.474269 | 5:-96175323 | None:intergenic |
| AATCAACTAGAATTAATTAC+CGG | 0.474504 | 5:+96175513 | MsG0580029382.01.T01:CDS |
| TCTAGTTGATTTGTAAACAT+TGG | 0.479041 | 5:-96175501 | None:intergenic |
| CAAAATTGATAAGCTTGTCC+TGG | 0.486513 | 5:-96175706 | None:intergenic |
| CTGTAGTATTTGTAAACCCT+AGG | 0.490342 | 5:-96174747 | None:intergenic |
| GGGACTTCCGGTTTCGCCAC+CGG | 0.493960 | 5:-96174600 | None:intergenic |
| CCGAATCTTCCAAGAACCCT+AGG | 0.500165 | 5:+96174730 | MsG0580029382.01.T01:CDS |
| GCCACTCAAGATGGTTCTCA+TGG | 0.500382 | 5:+96174673 | MsG0580029382.01.T01:CDS |
| TTGCACGCAATAGAGATCCT+TGG | 0.503227 | 5:-96175607 | None:intergenic |
| GGTTTCGCCACCGGAGGCGG+TGG | 0.504542 | 5:-96174591 | None:intergenic |
| GGATGCTAGCAATCCTATCA+TGG | 0.508578 | 5:+96175400 | MsG0580029382.01.T01:CDS |
| AAAACAACTGCACCAACGAC+CGG | 0.508881 | 5:+96175821 | MsG0580029382.01.T01:CDS |
| CGGTGGTTGCAGTGTTTCGA+CGG | 0.513001 | 5:-96174574 | None:intergenic |
| CTTTCCTTTCTGCTTTGGCA+GGG | 0.515547 | 5:+96175432 | MsG0580029382.01.T01:CDS |
| ATTCGTGGGAACTATAGGAT+TGG | 0.516233 | 5:+96175095 | MsG0580029382.01.T01:CDS |
| TAGCAATCCTATCATGGCTC+AGG | 0.529443 | 5:+96175406 | MsG0580029382.01.T01:CDS |
| GGATTGCTAGCATCCATAAG+AGG | 0.529525 | 5:-96175392 | None:intergenic |
| ACGAGCAACACATTCCTTGT+CGG | 0.529759 | 5:-96175264 | None:intergenic |
| GGCTTCAACTGATCGCCAAA+AGG | 0.531669 | 5:-96175299 | None:intergenic |
| TGTAGTATTTGTAAACCCTA+GGG | 0.534357 | 5:-96174746 | None:intergenic |
| AGAACCATCTTGAGTGGCTA+GGG | 0.535119 | 5:-96174668 | None:intergenic |
| TGGAACCAACGTCACCGACT+AGG | 0.535199 | 5:-96174839 | None:intergenic |
| CGTCGTATTATTCTTATCAC+AGG | 0.538639 | 5:-96175054 | None:intergenic |
| GGATTCACATTCAGCATCAA+CGG | 0.539105 | 5:-96175324 | None:intergenic |
| TTAATTACCGGTCATTTCCA+AGG | 0.542958 | 5:+96175525 | MsG0580029382.01.T01:CDS |
| GGTTTACTGAGCGAAGAAGA+AGG | 0.548651 | 5:-96174912 | None:intergenic |
| ATTTCGGGGATGATTGGAAG+AGG | 0.548838 | 5:+96175216 | MsG0580029382.01.T01:CDS |
| ATCTTGAGTGGCTAGGGACA+AGG | 0.549549 | 5:-96174662 | None:intergenic |
| TTCTGCTTTGGCAGGGACGG+AGG | 0.550159 | 5:+96175439 | MsG0580029382.01.T01:CDS |
| TTACCAGAACCCAAAACCTC+TGG | 0.550434 | 5:+96174624 | MsG0580029382.01.T01:CDS |
| GCTCAGTAAACCTCTCATAT+GGG | 0.554794 | 5:+96174923 | MsG0580029382.01.T01:CDS |
| TGAGGATTTAGACGTGCTGA+TGG | 0.555586 | 5:+96175727 | MsG0580029382.01.T01:CDS |
| TGCAAATTTACAGCTTGAGA+AGG | 0.556628 | 5:+96175625 | MsG0580029382.01.T01:CDS |
| CGAATCTTCCAAGAACCCTA+GGG | 0.558609 | 5:+96174731 | MsG0580029382.01.T01:CDS |
| ATGTATTCCTTGGAAATGAC+CGG | 0.559908 | 5:-96175532 | None:intergenic |
| AAAATCAAAGACTCTTCGAA+TGG | 0.560578 | 5:-96174859 | None:intergenic |
| TCATTGGCAGGCACCAGAGA+AGG | 0.560713 | 5:-96174993 | None:intergenic |
| TTGCTCATCAAGTTGTTGGT+AGG | 0.563248 | 5:+96175240 | MsG0580029382.01.T01:CDS |
| CCGTCCCTGCCAAAGCAGAA+AGG | 0.564962 | 5:-96175436 | None:intergenic |
| TGGAAGATTCGGGAATGTAA+CGG | 0.569089 | 5:-96174719 | None:intergenic |
| ATAATACGACGTTGTGTGCG+AGG | 0.569617 | 5:+96175066 | MsG0580029382.01.T01:CDS |
| TAATACAGAATTCAAGAGAG+TGG | 0.570887 | 5:+96175124 | MsG0580029382.01.T01:CDS |
| GAGAACCATCTTGAGTGGCT+AGG | 0.580360 | 5:-96174669 | None:intergenic |
| AGTGTTTCGACGGCGGAAGA+CGG | 0.582593 | 5:-96174564 | None:intergenic |
| GAATCCGAAACTGTTGCGTC+TGG | 0.583173 | 5:+96175341 | MsG0580029382.01.T01:CDS |
| AATGCTTCAGATTCTATCCA+AGG | 0.586687 | 5:+96175590 | MsG0580029382.01.T01:CDS |
| GAGAATCTGCAGTGTCTGCA+TGG | 0.586827 | 5:+96175022 | MsG0580029382.01.T01:CDS |
| TTGTCCCTAGCCACTCAAGA+TGG | 0.586862 | 5:+96174664 | MsG0580029382.01.T01:CDS |
| ACTGCAACCACCGCCTCCGG+TGG | 0.586976 | 5:+96174584 | MsG0580029382.01.T01:CDS |
| TCTTTATCTTCCCATATGAG+AGG | 0.587798 | 5:-96174933 | None:intergenic |
| CAAGAGAGTGGAGATAAGTG+AGG | 0.590112 | 5:+96175136 | MsG0580029382.01.T01:CDS |
| GACGGTTCTATTTGGCGTTG+AGG | 0.590322 | 5:-96174535 | None:intergenic |
| GGCGGAAGACGGAGGCTCGA+CGG | 0.590550 | 5:-96174553 | None:intergenic |
| GATTATGTTGGCGTCGCCAG+AGG | 0.591406 | 5:-96174640 | None:intergenic |
| GCTAGGGACAAGGATTATGT+TGG | 0.592687 | 5:-96174652 | None:intergenic |
| TTTCGGGGATGATTGGAAGA+GGG | 0.613337 | 5:+96175217 | MsG0580029382.01.T01:CDS |
| AAAATCCTAGTCGGTGACGT+TGG | 0.616879 | 5:+96174834 | MsG0580029382.01.T01:CDS |
| TGAAGCTATTACAAATTTCG+GGG | 0.621595 | 5:+96175202 | MsG0580029382.01.T01:CDS |
| CCACTCAAGATGGTTCTCAT+GGG | 0.624877 | 5:+96174674 | MsG0580029382.01.T01:CDS |
| TGGTTGCAGTGTTTCGACGG+CGG | 0.630155 | 5:-96174571 | None:intergenic |
| GCTTCTGTTGCATCTGATGG+TGG | 0.632718 | 5:+96175566 | MsG0580029382.01.T01:CDS |
| ACTTCCGGTTTCGCCACCGG+AGG | 0.635420 | 5:-96174597 | None:intergenic |
| CCCATGAGAACCATCTTGAG+TGG | 0.645166 | 5:-96174674 | None:intergenic |
| GTTTCGACGGCGGAAGACGG+AGG | 0.649104 | 5:-96174561 | None:intergenic |
| AGTTGTTGGTAGGACCGACA+AGG | 0.658858 | 5:+96175250 | MsG0580029382.01.T01:CDS |
| TCACATTCAGCATCAACGGG+AGG | 0.659217 | 5:-96175320 | None:intergenic |
| GATGTTCGCAAAATCCTAGT+CGG | 0.674756 | 5:+96174825 | MsG0580029382.01.T01:CDS |
| TGAGAAGGAAGAATCAGACG+TGG | 0.680762 | 5:+96175640 | MsG0580029382.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCAACTAGAATTAATTAC+CGG | + | Chr5:96175513-96175532 | MsG0580029382.01.T01:CDS | 20.0% |
| ! | CTTGAAGCTATTACAAATTT+CGG | + | Chr5:96175200-96175219 | MsG0580029382.01.T01:CDS | 25.0% |
| ! | TTGAAGCTATTACAAATTTC+GGG | + | Chr5:96175201-96175220 | MsG0580029382.01.T01:CDS | 25.0% |
| !!! | TCTAGTTGATTTGTAAACAT+TGG | - | Chr5:96175504-96175523 | None:intergenic | 25.0% |
| AAAATCAAAGACTCTTCGAA+TGG | - | Chr5:96174862-96174881 | None:intergenic | 30.0% | |
| AGTTCAGATGAAAAATATCC+AGG | + | Chr5:96175688-96175707 | MsG0580029382.01.T01:CDS | 30.0% | |
| CAACAGAAAAATCACATTCA+CGG | + | Chr5:96174803-96174822 | MsG0580029382.01.T01:CDS | 30.0% | |
| TAATACAGAATTCAAGAGAG+TGG | + | Chr5:96175124-96175143 | MsG0580029382.01.T01:CDS | 30.0% | |
| TGAAGCTATTACAAATTTCG+GGG | + | Chr5:96175202-96175221 | MsG0580029382.01.T01:CDS | 30.0% | |
| TGTAGTATTTGTAAACCCTA+GGG | - | Chr5:96174749-96174768 | None:intergenic | 30.0% | |
| ! | GTGAATGTGATTTTTCTGTT+GGG | - | Chr5:96174804-96174823 | None:intergenic | 30.0% |
| !! | CTTTGATTTTCTTGAAGCTT+GGG | + | Chr5:96174872-96174891 | MsG0580029382.01.T01:CDS | 30.0% |
| !! | TCTTTGATTTTCTTGAAGCT+TGG | + | Chr5:96174871-96174890 | MsG0580029382.01.T01:CDS | 30.0% |
| !! | TTTGATTTTCTTGAAGCTTG+GGG | + | Chr5:96174873-96174892 | MsG0580029382.01.T01:CDS | 30.0% |
| AATGCTTCAGATTCTATCCA+AGG | + | Chr5:96175590-96175609 | MsG0580029382.01.T01:CDS | 35.0% | |
| AGGAGATTCTGTAGAATTTG+AGG | - | Chr5:96174976-96174995 | None:intergenic | 35.0% | |
| ATGTATTCCTTGGAAATGAC+CGG | - | Chr5:96175535-96175554 | None:intergenic | 35.0% | |
| CAAAATTGATAAGCTTGTCC+TGG | - | Chr5:96175709-96175728 | None:intergenic | 35.0% | |
| CGTCGTATTATTCTTATCAC+AGG | - | Chr5:96175057-96175076 | None:intergenic | 35.0% | |
| CTGTAGTATTTGTAAACCCT+AGG | - | Chr5:96174750-96174769 | None:intergenic | 35.0% | |
| GTGAGGAGACAAAAAATGAA+TGG | + | Chr5:96175153-96175172 | MsG0580029382.01.T01:CDS | 35.0% | |
| TCTTTATCTTCCCATATGAG+AGG | - | Chr5:96174936-96174955 | None:intergenic | 35.0% | |
| TGCAAATTTACAGCTTGAGA+AGG | + | Chr5:96175625-96175644 | MsG0580029382.01.T01:CDS | 35.0% | |
| TTAATTACCGGTCATTTCCA+AGG | + | Chr5:96175525-96175544 | MsG0580029382.01.T01:CDS | 35.0% | |
| TTACAAATTTCGGGGATGAT+TGG | + | Chr5:96175210-96175229 | MsG0580029382.01.T01:CDS | 35.0% | |
| ! | CGTGAATGTGATTTTTCTGT+TGG | - | Chr5:96174805-96174824 | None:intergenic | 35.0% |
| ! | GGACAAGCTTATCAATTTTG+AGG | + | Chr5:96175709-96175728 | MsG0580029382.01.T01:CDS | 35.0% |
| !! | GACAAAAAATGAATGGACTG+AGG | + | Chr5:96175160-96175179 | MsG0580029382.01.T01:CDS | 35.0% |
| !! | GTTTTATTCGTGGGAACTAT+AGG | + | Chr5:96175090-96175109 | MsG0580029382.01.T01:CDS | 35.0% |
| AATGTGTCTCACACCTCTTA+TGG | + | Chr5:96175379-96175398 | MsG0580029382.01.T01:CDS | 40.0% | |
| ATTCGTGGGAACTATAGGAT+TGG | + | Chr5:96175095-96175114 | MsG0580029382.01.T01:CDS | 40.0% | |
| ATTCTCTTAGCTTCATTGGC+AGG | - | Chr5:96175008-96175027 | None:intergenic | 40.0% | |
| CGTGGAAAAAGCAATTTCTG+AGG | + | Chr5:96175658-96175677 | MsG0580029382.01.T01:CDS | 40.0% | |
| GATGTTCGCAAAATCCTAGT+CGG | + | Chr5:96174825-96174844 | MsG0580029382.01.T01:CDS | 40.0% | |
| GATTCACATTCAGCATCAAC+GGG | - | Chr5:96175326-96175345 | None:intergenic | 40.0% | |
| GCAGATTCTCTTAGCTTCAT+TGG | - | Chr5:96175012-96175031 | None:intergenic | 40.0% | |
| GCTCAGTAAACCTCTCATAT+GGG | + | Chr5:96174923-96174942 | MsG0580029382.01.T01:CDS | 40.0% | |
| GGATTCACATTCAGCATCAA+CGG | - | Chr5:96175327-96175346 | None:intergenic | 40.0% | |
| TCTTGCTGCAATGTATTCCT+TGG | - | Chr5:96175545-96175564 | None:intergenic | 40.0% | |
| TGGAAGATTCGGGAATGTAA+CGG | - | Chr5:96174722-96174741 | None:intergenic | 40.0% | |
| TTCTACAGAATCTCCTTCTC+TGG | + | Chr5:96174980-96174999 | MsG0580029382.01.T01:CDS | 40.0% | |
| TTTACCAGACGCAACAGTTT+CGG | - | Chr5:96175348-96175367 | None:intergenic | 40.0% | |
| TTTGTAAACCCTAGGGTTCT+TGG | - | Chr5:96174742-96174761 | None:intergenic | 40.0% | |
| ! | TTGCTCATCAAGTTGTTGGT+AGG | + | Chr5:96175240-96175259 | MsG0580029382.01.T01:CDS | 40.0% |
| !!! | AGGTTTTGGGTTCTGGTAAT+GGG | - | Chr5:96174623-96174642 | None:intergenic | 40.0% |
| !!! | CGTTTTCTAGAGCTTCCTTT+TGG | + | Chr5:96175284-96175303 | MsG0580029382.01.T01:CDS | 40.0% |
| AAAACAACTGCACCAACGAC+CGG | + | Chr5:96175821-96175840 | MsG0580029382.01.T01:CDS | 45.0% | |
| AAAATCCTAGTCGGTGACGT+TGG | + | Chr5:96174834-96174853 | MsG0580029382.01.T01:CDS | 45.0% | |
| ACGAGCAACACATTCCTTGT+CGG | - | Chr5:96175267-96175286 | None:intergenic | 45.0% | |
| ACGGATTTCGCATTCGTGAA+TGG | - | Chr5:96174703-96174722 | None:intergenic | 45.0% | |
| AGAACCATCTTGAGTGGCTA+GGG | - | Chr5:96174671-96174690 | None:intergenic | 45.0% | |
| ATAATACGACGTTGTGTGCG+AGG | + | Chr5:96175066-96175085 | MsG0580029382.01.T01:CDS | 45.0% | |
| ATTTCGGGGATGATTGGAAG+AGG | + | Chr5:96175216-96175235 | MsG0580029382.01.T01:CDS | 45.0% | |
| CAAGAGAGTGGAGATAAGTG+AGG | + | Chr5:96175136-96175155 | MsG0580029382.01.T01:CDS | 45.0% | |
| CCACTCAAGATGGTTCTCAT+GGG | + | Chr5:96174674-96174693 | MsG0580029382.01.T01:CDS | 45.0% | |
| CCTAGGGTTCTTGGAAGATT+CGG | - | Chr5:96174733-96174752 | None:intergenic | 45.0% | |
| CGAATCTTCCAAGAACCCTA+GGG | + | Chr5:96174731-96174750 | MsG0580029382.01.T01:CDS | 45.0% | |
| CGCTCAGTAAACCTCTCATA+TGG | + | Chr5:96174922-96174941 | MsG0580029382.01.T01:CDS | 45.0% | |
| CTAGGGTTCTTGGAAGATTC+GGG | - | Chr5:96174732-96174751 | None:intergenic | 45.0% | |
| CTTTCCTTTCTGCTTTGGCA+GGG | + | Chr5:96175432-96175451 | MsG0580029382.01.T01:CDS | 45.0% | |
| GATGCTTCTGTTGCATCTGA+TGG | + | Chr5:96175563-96175582 | MsG0580029382.01.T01:CDS | 45.0% | |
| GCTAGGGACAAGGATTATGT+TGG | - | Chr5:96174655-96174674 | None:intergenic | 45.0% | |
| GGATGCTAGCAATCCTATCA+TGG | + | Chr5:96175400-96175419 | MsG0580029382.01.T01:CDS | 45.0% | |
| GGATTGCTAGCATCCATAAG+AGG | - | Chr5:96175395-96175414 | None:intergenic | 45.0% | |
| GGTTTACTGAGCGAAGAAGA+AGG | - | Chr5:96174915-96174934 | None:intergenic | 45.0% | |
| TAGCAATCCTATCATGGCTC+AGG | + | Chr5:96175406-96175425 | MsG0580029382.01.T01:CDS | 45.0% | |
| TGAGAAGGAAGAATCAGACG+TGG | + | Chr5:96175640-96175659 | MsG0580029382.01.T01:CDS | 45.0% | |
| TGAGGATTTAGACGTGCTGA+TGG | + | Chr5:96175727-96175746 | MsG0580029382.01.T01:CDS | 45.0% | |
| TTACCAGAACCCAAAACCTC+TGG | + | Chr5:96174624-96174643 | MsG0580029382.01.T01:CDS | 45.0% | |
| TTGCACGCAATAGAGATCCT+TGG | - | Chr5:96175610-96175629 | None:intergenic | 45.0% | |
| TTTCGGGGATGATTGGAAGA+GGG | + | Chr5:96175217-96175236 | MsG0580029382.01.T01:CDS | 45.0% | |
| ! | AGGGTTGCTCATCAAGTTGT+TGG | + | Chr5:96175236-96175255 | MsG0580029382.01.T01:CDS | 45.0% |
| !! | GTGCGAGGTGTTTTATTCGT+GGG | + | Chr5:96175081-96175100 | MsG0580029382.01.T01:CDS | 45.0% |
| !! | TGTGCGAGGTGTTTTATTCG+TGG | + | Chr5:96175080-96175099 | MsG0580029382.01.T01:CDS | 45.0% |
| !!! | GAGGTTTTGGGTTCTGGTAA+TGG | - | Chr5:96174624-96174643 | None:intergenic | 45.0% |
| AAAGCAGCCTGAGCCATGAT+AGG | - | Chr5:96175416-96175435 | None:intergenic | 50.0% | |
| ATCTTGAGTGGCTAGGGACA+AGG | - | Chr5:96174665-96174684 | None:intergenic | 50.0% | |
| CCCATGAGAACCATCTTGAG+TGG | - | Chr5:96174677-96174696 | None:intergenic | 50.0% | |
| CCGAATCTTCCAAGAACCCT+AGG | + | Chr5:96174730-96174749 | MsG0580029382.01.T01:CDS | 50.0% | |
| GAATCCGAAACTGTTGCGTC+TGG | + | Chr5:96175341-96175360 | MsG0580029382.01.T01:CDS | 50.0% | |
| GACGGTTCTATTTGGCGTTG+AGG | - | Chr5:96174538-96174557 | None:intergenic | 50.0% | |
| GAGAACCATCTTGAGTGGCT+AGG | - | Chr5:96174672-96174691 | None:intergenic | 50.0% | |
| GAGAATCTGCAGTGTCTGCA+TGG | + | Chr5:96175022-96175041 | MsG0580029382.01.T01:CDS | 50.0% | |
| GCCACTCAAGATGGTTCTCA+TGG | + | Chr5:96174673-96174692 | MsG0580029382.01.T01:CDS | 50.0% | |
| GCTTCTGTTGCATCTGATGG+TGG | + | Chr5:96175566-96175585 | MsG0580029382.01.T01:CDS | 50.0% | |
| GCTTTCCTTTCTGCTTTGGC+AGG | + | Chr5:96175431-96175450 | MsG0580029382.01.T01:CDS | 50.0% | |
| GGAAAAAGAACGCCAGCAGT+TGG | + | Chr5:96175748-96175767 | MsG0580029382.01.T01:CDS | 50.0% | |
| GGCTTCAACTGATCGCCAAA+AGG | - | Chr5:96175302-96175321 | None:intergenic | 50.0% | |
| TCACATTCAGCATCAACGGG+AGG | - | Chr5:96175323-96175342 | None:intergenic | 50.0% | |
| TCTTCGTTTGCTCCAACTGC+TGG | - | Chr5:96175763-96175782 | None:intergenic | 50.0% | |
| TTGTCCCTAGCCACTCAAGA+TGG | + | Chr5:96174664-96174683 | MsG0580029382.01.T01:CDS | 50.0% | |
| ! | AGTTGTTGGTAGGACCGACA+AGG | + | Chr5:96175250-96175269 | MsG0580029382.01.T01:CDS | 50.0% |
| ! | GGCTGCTTTCCTTTCTGCTT+TGG | + | Chr5:96175427-96175446 | MsG0580029382.01.T01:CDS | 50.0% |
| !! | GGTTCTGGTAATGGGACTTC+CGG | - | Chr5:96174615-96174634 | None:intergenic | 50.0% |
| AGTGTTTCGACGGCGGAAGA+CGG | - | Chr5:96174567-96174586 | None:intergenic | 55.0% | |
| CCTTTCTGCTTTGGCAGGGA+CGG | + | Chr5:96175436-96175455 | MsG0580029382.01.T01:CDS | 55.0% | |
| CGGTGGTTGCAGTGTTTCGA+CGG | - | Chr5:96174577-96174596 | None:intergenic | 55.0% | |
| GATTATGTTGGCGTCGCCAG+AGG | - | Chr5:96174643-96174662 | None:intergenic | 55.0% | |
| GGAGGCTCGACGGTTCTATT+TGG | - | Chr5:96174546-96174565 | None:intergenic | 55.0% | |
| TCATTGGCAGGCACCAGAGA+AGG | - | Chr5:96174996-96175015 | None:intergenic | 55.0% | |
| TGGTTGCAGTGTTTCGACGG+CGG | - | Chr5:96174574-96174593 | None:intergenic | 55.0% | |
| ! | TGGAACCAACGTCACCGACT+AGG | - | Chr5:96174842-96174861 | None:intergenic | 55.0% |
| ! | TTGGCGTCGCCAGAGGTTTT+GGG | - | Chr5:96174636-96174655 | None:intergenic | 55.0% |
| !!! | TCGCCAGAGGTTTTGGGTTC+TGG | - | Chr5:96174630-96174649 | None:intergenic | 55.0% |
| AACACTGCAACCACCGCCTC+CGG | + | Chr5:96174581-96174600 | MsG0580029382.01.T01:CDS | 60.0% | |
| CCGTCCCTGCCAAAGCAGAA+AGG | - | Chr5:96175439-96175458 | None:intergenic | 60.0% | |
| TTCTGCTTTGGCAGGGACGG+AGG | + | Chr5:96175439-96175458 | MsG0580029382.01.T01:CDS | 60.0% | |
| ! | GTTGGCGTCGCCAGAGGTTT+TGG | - | Chr5:96174637-96174656 | None:intergenic | 60.0% |
| ACTTCCGGTTTCGCCACCGG+AGG | - | Chr5:96174600-96174619 | None:intergenic | 65.0% | |
| GGGACTTCCGGTTTCGCCAC+CGG | - | Chr5:96174603-96174622 | None:intergenic | 65.0% | |
| GTTTCGACGGCGGAAGACGG+AGG | - | Chr5:96174564-96174583 | None:intergenic | 65.0% | |
| ACCGCCTCCGGTGGCGAAAC+CGG | + | Chr5:96174593-96174612 | MsG0580029382.01.T01:CDS | 70.0% | |
| ACTGCAACCACCGCCTCCGG+TGG | + | Chr5:96174584-96174603 | MsG0580029382.01.T01:CDS | 70.0% | |
| GGCGGAAGACGGAGGCTCGA+CGG | - | Chr5:96174556-96174575 | None:intergenic | 70.0% | |
| TCCGGTTTCGCCACCGGAGG+CGG | - | Chr5:96174597-96174616 | None:intergenic | 70.0% | |
| GGTTTCGCCACCGGAGGCGG+TGG | - | Chr5:96174594-96174613 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 96174528 | 96175850 | 96174528 | ID=MsG0580029382.01;Name=MsG0580029382.01 |
| Chr5 | mRNA | 96174528 | 96175850 | 96174528 | ID=MsG0580029382.01.T01;Parent=MsG0580029382.01;Name=MsG0580029382.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|440 |
| Chr5 | exon | 96174528 | 96175850 | 96174528 | ID=MsG0580029382.01.T01:exon:36040;Parent=MsG0580029382.01.T01 |
| Chr5 | CDS | 96174528 | 96175850 | 96174528 | ID=MsG0580029382.01.T01:cds;Parent=MsG0580029382.01.T01 |
| Gene Sequence |
| Protein sequence |
