AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680034501.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034501.01.T02 MTR_8g101230 95.111 225 2 2 1 225 101 316 7.78e-147 412
MsG0680034501.01.T02 MTR_8g101230 92.444 225 2 2 1 225 101 310 1.11e-140 396
MsG0680034501.01.T02 MTR_8g101230 94.022 184 2 2 1 184 101 275 6.59e-116 332
MsG0680034501.01.T01 MTR_8g101230 95.785 261 2 2 2 262 65 316 1.91e-176 488
MsG0680034501.01.T01 MTR_8g101230 93.487 261 2 2 2 262 65 310 1.75e-170 473
MsG0680034501.01.T01 MTR_8g101230 95.000 220 2 2 2 221 65 275 1.34e-145 409
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034501.01.T02 AT2G26590 59.556 225 67 5 1 224 99 300 2.30e-76 233
MsG0680034501.01.T02 AT2G26590 59.556 225 67 5 1 224 99 300 2.30e-76 233
MsG0680034501.01.T02 AT2G26590 59.556 225 67 5 1 224 99 300 2.30e-76 233
MsG0680034501.01.T02 AT2G26590 57.333 225 68 6 1 224 99 296 3.67e-70 216
MsG0680034501.01.T01 AT2G26590 62.452 261 74 5 2 261 63 300 6.17e-102 299
MsG0680034501.01.T01 AT2G26590 62.452 261 74 5 2 261 63 300 6.17e-102 299
MsG0680034501.01.T01 AT2G26590 62.452 261 74 5 2 261 63 300 6.17e-102 299
MsG0680034501.01.T01 AT2G26590 60.536 261 75 6 2 261 63 296 1.16e-95 283

Find 7 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGACAGAAAGTTCTTCTTC+TGG 0.336325 6:+88633379 MsG0680034501.01.T01:CDS
CTCTGATTCTTGGTTTGATT+AGG 0.341789 6:+88633311 MsG0680034501.01.T01:intron
GATTAGGTTAATCAAACATC+TGG 0.417400 6:+88633327 MsG0680034501.01.T01:intron
AAAGTTCTTCTTCTGGATGC+AGG 0.461672 6:+88633386 MsG0680034501.01.T01:CDS
GGTTAATCAAACATCTGGAA+GGG 0.549885 6:+88633332 MsG0680034501.01.T01:intron
AGGTTAATCAAACATCTGGA+AGG 0.590396 6:+88633331 MsG0680034501.01.T01:intron
TCAGATAATATTTCCGAACG+AGG 0.696593 6:+88633215 MsG0680034501.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAATAAACAAAAATGA+AGG + Chr6:88636243-88636262 MsG0680034501.01.T01:intron 10.0%
!! TATTTACAAGATTATAAATA+AGG + Chr6:88633754-88633773 MsG0680034501.01.T01:intron 10.0%
!! TTAATAAAATTCAAATCTAT+CGG + Chr6:88636626-88636645 MsG0680034501.01.T01:three_prime_UTR 10.0%
!! TTTATAAAAATATTAGCAAA+AGG + Chr6:88635481-88635500 MsG0680034501.01.T01:intron 10.0%
!!! TATTTAATTAAGATTTTTCA+AGG + Chr6:88636586-88636605 MsG0680034501.01.T01:three_prime_UTR 10.0%
!! ATCAAAATCAATAACAATTA+AGG - Chr6:88635966-88635985 None:intergenic 15.0%
!! ATGAAATGTAAAAAAGAAAA+AGG - Chr6:88635812-88635831 None:intergenic 15.0%
!! ATTTCATTTCAAAAGATATT+CGG + Chr6:88635825-88635844 MsG0680034501.01.T01:intron 15.0%
!!! AAAAGTTTGTTTTTTTTTGT+TGG + Chr6:88634997-88635016 MsG0680034501.01.T01:intron 15.0%
!!! TGTACAATAATTTATTTTCA+TGG + Chr6:88634294-88634313 MsG0680034501.01.T01:intron 15.0%
!! AAAATCAATAACAATTAAGG+TGG - Chr6:88635963-88635982 None:intergenic 20.0%
!! AAATGTAAAAAAGAAAAAGG+AGG - Chr6:88635809-88635828 None:intergenic 20.0%
!! AATGTAAAAAAGAAAAAGGA+GGG - Chr6:88635808-88635827 None:intergenic 20.0%
!! CATATCATCAAAAAAGTAAT+AGG - Chr6:88635206-88635225 None:intergenic 20.0%
!! CCTAAAAAAAAAAATTGACA+TGG - Chr6:88633930-88633949 None:intergenic 20.0%
!! CTTGAAAAAGGAAAATTTAA+AGG + Chr6:88636556-88636575 MsG0680034501.01.T01:three_prime_UTR 20.0%
!! GATCAATATAATTCTTTAAC+TGG - Chr6:88636747-88636766 None:intergenic 20.0%
!! TTCGTTAAAAAATGCATATT+AGG + Chr6:88634530-88634549 MsG0680034501.01.T01:intron 20.0%
!!! AAAGTATTTCCATTTGATTA+TGG + Chr6:88634415-88634434 MsG0680034501.01.T01:intron 20.0%
!!! AGATTCTTTTACTTATGTAA+AGG + Chr6:88635775-88635794 MsG0680034501.01.T01:CDS 20.0%
!!! ATTTATTCACATTTTCCATT+TGG + Chr6:88636065-88636084 MsG0680034501.01.T01:intron 20.0%
!!! CCATGTCAATTTTTTTTTTT+AGG + Chr6:88633927-88633946 MsG0680034501.01.T01:intron 20.0%
!!! TTTGGATATTCAAATGTTTT+CGG + Chr6:88634858-88634877 MsG0680034501.01.T01:intron 20.0%
! ACTAGAAACTTACATTTACT+TGG - Chr6:88635921-88635940 None:intergenic 25.0%
! ATCATCAAGTCAAAATACTT+AGG - Chr6:88633443-88633462 None:intergenic 25.0%
! ATGGAAAATGTGAATAAATG+TGG - Chr6:88636064-88636083 None:intergenic 25.0%
! CATGAATCAAAACCAATAAA+AGG - Chr6:88634629-88634648 None:intergenic 25.0%
! CGTAACCATACTAATATATT+TGG - Chr6:88634562-88634581 None:intergenic 25.0%
! GAAAGCCAAATATATTAGTA+TGG + Chr6:88634554-88634573 MsG0680034501.01.T01:intron 25.0%
! TAGATTCCTATACACAATAA+AGG - Chr6:88633495-88633514 None:intergenic 25.0%
! TATCTATTTATTTACCTGAC+TGG + Chr6:88634969-88634988 MsG0680034501.01.T01:intron 25.0%
! TCATCAAGTCAAAATACTTA+GGG - Chr6:88633442-88633461 None:intergenic 25.0%
! TGGAAAATGTGAATAAATGT+GGG - Chr6:88636063-88636082 None:intergenic 25.0%
! TTAATTAATGCAAAGAAGCT+AGG + Chr6:88633902-88633921 MsG0680034501.01.T01:intron 25.0%
! TTCTATAGATACAAGAAACT+TGG + Chr6:88636507-88636526 MsG0680034501.01.T01:three_prime_UTR 25.0%
!! CAGTTTTCTTGCATTTAATT+AGG + Chr6:88635522-88635541 MsG0680034501.01.T01:intron 25.0%
!! CATATATTTCTGCTTGAAAA+AGG + Chr6:88636544-88636563 MsG0680034501.01.T01:three_prime_UTR 25.0%
!!! ATTTAATTAGGCTTTGAACT+CGG + Chr6:88635534-88635553 MsG0680034501.01.T01:intron 25.0%
!!! TAAAAAGTGTTGTCAAATAG+TGG + Chr6:88634183-88634202 MsG0680034501.01.T01:intron 25.0%
!!! TATTTTCTGAGAATTACTAC+TGG + Chr6:88636283-88636302 MsG0680034501.01.T01:intron 25.0%
!!! TCTTGGGTATGATTATTTTA+TGG + Chr6:88633272-88633291 MsG0680034501.01.T01:intron 25.0%
!!! TGCATTTTTTAACGAAATCT+AGG - Chr6:88634526-88634545 None:intergenic 25.0%
AAAATGTGAATAAATGTGGG+AGG - Chr6:88636060-88636079 None:intergenic 30.0%
AACAACTCCAATATATCTTC+TGG - Chr6:88635728-88635747 None:intergenic 30.0%
AACTTAGCACAACTTAGTAT+TGG + Chr6:88634007-88634026 MsG0680034501.01.T01:intron 30.0%
AATGAAGGAAAAAAGATACG+AGG + Chr6:88636258-88636277 MsG0680034501.01.T01:intron 30.0%
ACAAGCAATGTTGTCAATAA+CGG - Chr6:88634277-88634296 None:intergenic 30.0%
ACAGTCTTAATAGATAGCAA+GGG - Chr6:88635281-88635300 None:intergenic 30.0%
ACTACATGAATCACTAAACA+AGG - Chr6:88635680-88635699 None:intergenic 30.0%
ACTTAGCACAACTTAGTATT+GGG + Chr6:88634008-88634027 MsG0680034501.01.T01:intron 30.0%
AGATCTCAACACAGTTTAAA+GGG - Chr6:88635181-88635200 None:intergenic 30.0%
AGCACTTTAATGACAGAAAA+TGG - Chr6:88634446-88634465 None:intergenic 30.0%
AGCTTACAATTCAAAGCAAA+AGG - Chr6:88633590-88633609 None:intergenic 30.0%
ATCTTACTCTTACACATATG+TGG + Chr6:88634490-88634509 MsG0680034501.01.T01:intron 30.0%
CAATTCTGCTTACTTAAGAA+TGG + Chr6:88633654-88633673 MsG0680034501.01.T01:intron 30.0%
CACTTTAATGACAGAAAATG+GGG - Chr6:88634444-88634463 None:intergenic 30.0%
CATGTAGTATTCTATGATGT+AGG + Chr6:88635692-88635711 MsG0680034501.01.T01:intron 30.0%
GATTAGGTTAATCAAACATC+TGG + Chr6:88633327-88633346 MsG0680034501.01.T01:intron 30.0%
GATTATATATTTATCGCTGC+AGG + Chr6:88635851-88635870 MsG0680034501.01.T01:intron 30.0%
GCACTTTAATGACAGAAAAT+GGG - Chr6:88634445-88634464 None:intergenic 30.0%
GTATTTCCATTTGATTATGG+TGG + Chr6:88634418-88634437 MsG0680034501.01.T01:intron 30.0%
TAACATTACCTCTGGTAAAT+AGG - Chr6:88635628-88635647 None:intergenic 30.0%
TAGGCAAATAGCTAAATGTA+TGG + Chr6:88634677-88634696 MsG0680034501.01.T01:intron 30.0%
TATCTATTAAGACTGTGTGA+TGG + Chr6:88635285-88635304 MsG0680034501.01.T01:intron 30.0%
TATTCTATGATGTAGGTACT+TGG + Chr6:88635699-88635718 MsG0680034501.01.T01:intron 30.0%
TGTGTAAGAGTAAGATCATA+TGG - Chr6:88634486-88634505 None:intergenic 30.0%
TTCAAAGTTTCATGTCTTGT+AGG + Chr6:88636181-88636200 MsG0680034501.01.T01:intron 30.0%
TTCTTTAACTGGTATAACTC+CGG - Chr6:88636736-88636755 None:intergenic 30.0%
TTGCTAATGAGTACAATACT+TGG + Chr6:88636153-88636172 MsG0680034501.01.T01:intron 30.0%
! ACAAATTTGCTTTCTAGTAC+TGG + Chr6:88636111-88636130 MsG0680034501.01.T01:intron 30.0%
! CACATTTTCCATTTGGTATA+CGG + Chr6:88636072-88636091 MsG0680034501.01.T01:intron 30.0%
! TAAAAGAATCTACTTGCTGA+CGG - Chr6:88635766-88635785 None:intergenic 30.0%
!! ATGACAGAAAATTTTGATGC+TGG + Chr6:88634600-88634619 MsG0680034501.01.T01:intron 30.0%
!!! ACAAGAAACTTGGTTTTTTG+TGG + Chr6:88636517-88636536 MsG0680034501.01.T01:three_prime_UTR 30.0%
!!! ATGGTTTTGAACAACCATTT+AGG + Chr6:88634077-88634096 MsG0680034501.01.T01:intron 30.0%
AAAATACTTAGGGAGACAAG+TGG - Chr6:88633432-88633451 None:intergenic 35.0%
AAGGAGAGATACTTACCTAA+TGG - Chr6:88633571-88633590 None:intergenic 35.0%
AATATCCGATTTCTCTCAGA+AGG + Chr6:88636666-88636685 MsG0680034501.01.T01:three_prime_UTR 35.0%
ACTAAGTTGTGCTAAGTTGT+TGG - Chr6:88634005-88634024 None:intergenic 35.0%
ACTTGGATCAATTCCAAACT+GGG - Chr6:88635904-88635923 None:intergenic 35.0%
AGATATGCAATGCACTAGTA+AGG - Chr6:88634954-88634973 None:intergenic 35.0%
AGGCTTACACGTTAATAGAA+AGG - Chr6:88633614-88633633 None:intergenic 35.0%
AGGTTAATCAAACATCTGGA+AGG + Chr6:88633331-88633350 MsG0680034501.01.T01:intron 35.0%
ATATTCTGACCTCTGATTCT+TGG + Chr6:88633301-88633320 MsG0680034501.01.T01:intron 35.0%
ATCAATGGCAATATCAGATC+AGG - Chr6:88635573-88635592 None:intergenic 35.0%
ATCTTCTGGTCCAGTTAAAT+TGG + Chr6:88635078-88635097 MsG0680034501.01.T01:CDS 35.0%
ATGACAGAAAGTTCTTCTTC+TGG + Chr6:88633379-88633398 MsG0680034501.01.T01:CDS 35.0%
ATGGTTGTTCAAAACCATAC+AGG - Chr6:88634075-88634094 None:intergenic 35.0%
ATTAGTATGGTTACGTACAC+AGG + Chr6:88634567-88634586 MsG0680034501.01.T01:intron 35.0%
CAATGTTGCTCAATATTCTC+TGG - Chr6:88635111-88635130 None:intergenic 35.0%
CACAGTCTTAATAGATAGCA+AGG - Chr6:88635282-88635301 None:intergenic 35.0%
CACTGCTTTACTCTTATCTT+GGG + Chr6:88633256-88633275 MsG0680034501.01.T01:intron 35.0%
CAGAGAATATTGAGCAACAT+TGG + Chr6:88635109-88635128 MsG0680034501.01.T01:CDS 35.0%
CAGATCTCAACACAGTTTAA+AGG - Chr6:88635182-88635201 None:intergenic 35.0%
CATTGGTATAACATTACCTC+TGG - Chr6:88635636-88635655 None:intergenic 35.0%
CCTATACACAATAAAGGTTC+AGG - Chr6:88633489-88633508 None:intergenic 35.0%
CCTGAACCTTTATTGTGTAT+AGG + Chr6:88633486-88633505 MsG0680034501.01.T01:intron 35.0%
CTAATCAAACCAAGAATCAG+AGG - Chr6:88633313-88633332 None:intergenic 35.0%
GAATATCCAAACTAAGTACC+TGG - Chr6:88634849-88634868 None:intergenic 35.0%
GATATGCAATGCACTAGTAA+GGG - Chr6:88634953-88634972 None:intergenic 35.0%
GATTTCTCTCAGAAGGTTAT+GGG + Chr6:88636673-88636692 MsG0680034501.01.T01:three_prime_UTR 35.0%
GGTTAATCAAACATCTGGAA+GGG + Chr6:88633332-88633351 MsG0680034501.01.T01:intron 35.0%
GTATCTTCAGAAACTTCAAG+CGG - Chr6:88634806-88634825 None:intergenic 35.0%
GTGCACATTGTTGTCAAAAA+CGG + Chr6:88634107-88634126 MsG0680034501.01.T01:intron 35.0%
TACTTGGATCAATTCCAAAC+TGG - Chr6:88635905-88635924 None:intergenic 35.0%
TCAGATAATATTTCCGAACG+AGG + Chr6:88633215-88633234 MsG0680034501.01.T01:CDS 35.0%
TCTTAAGTAAGCAGAATTGC+AGG - Chr6:88633653-88633672 None:intergenic 35.0%
TGATCTGATATTGCCATTGA+TGG + Chr6:88635572-88635591 MsG0680034501.01.T01:CDS 35.0%
TGGTTGTTCAAAACCATACA+GGG - Chr6:88634074-88634093 None:intergenic 35.0%
TGTGCACAAGTATTCCTAAA+TGG - Chr6:88634094-88634113 None:intergenic 35.0%
TTGGTCTCCAGAAGATATAT+TGG + Chr6:88635718-88635737 MsG0680034501.01.T01:CDS 35.0%
TTTCATGTCTTGTAGGTTTC+AGG + Chr6:88636188-88636207 MsG0680034501.01.T01:intron 35.0%
! CATAACCTTCTGAGAGAAAT+CGG - Chr6:88636674-88636693 None:intergenic 35.0%
! CTCTGATTCTTGGTTTGATT+AGG + Chr6:88633311-88633330 MsG0680034501.01.T01:intron 35.0%
! TGATGCTGGTAACCTTTTAT+TGG + Chr6:88634614-88634633 MsG0680034501.01.T01:intron 35.0%
!! GTTCACAGTTTTGTCTTTTC+TGG + Chr6:88636362-88636381 MsG0680034501.01.T01:CDS 35.0%
!! TTTGCCTATGTCACTTTGAA+AGG - Chr6:88634665-88634684 None:intergenic 35.0%
AAACTGTATCCCATGATGAG+GGG + Chr6:88635417-88635436 MsG0680034501.01.T01:intron 40.0%
AAAGTTCTTCTTCTGGATGC+AGG + Chr6:88633386-88633405 MsG0680034501.01.T01:CDS 40.0%
AATGTTGTCAATAACGGTCG+TGG - Chr6:88634271-88634290 None:intergenic 40.0%
ACTAGCGATGTAACATCTTC+TGG + Chr6:88635064-88635083 MsG0680034501.01.T01:CDS 40.0%
ACTTACCTAATGGTCTGTTG+AGG - Chr6:88633561-88633580 None:intergenic 40.0%
ATACTAATGCCCCTCATCAT+GGG - Chr6:88635429-88635448 None:intergenic 40.0%
ATCTCAATCTTGTACCCCAA+TGG + Chr6:88636446-88636465 MsG0680034501.01.T01:CDS 40.0%
ATGTTGTCAATAACGGTCGT+GGG - Chr6:88634270-88634289 None:intergenic 40.0%
ATTGATGGAGACGTTACCAT+TGG + Chr6:88635587-88635606 MsG0680034501.01.T01:CDS 40.0%
CAAACTGTATCCCATGATGA+GGG + Chr6:88635416-88635435 MsG0680034501.01.T01:intron 40.0%
CAATGCACTAGTAAGGGATT+TGG - Chr6:88634947-88634966 None:intergenic 40.0%
CAGATAGATTTGTCCCAGTT+TGG + Chr6:88635888-88635907 MsG0680034501.01.T01:CDS 40.0%
CCAAGATAAGAGTAAAGCAG+TGG - Chr6:88633258-88633277 None:intergenic 40.0%
CCACTGCTTTACTCTTATCT+TGG + Chr6:88633255-88633274 MsG0680034501.01.T01:intron 40.0%
CGAAAAGTCAATCGCTACAT+TGG - Chr6:88635653-88635672 None:intergenic 40.0%
CGATTTCTCTCAGAAGGTTA+TGG + Chr6:88636672-88636691 MsG0680034501.01.T01:three_prime_UTR 40.0%
CTACTTGGATTCATCCATTG+GGG - Chr6:88636463-88636482 None:intergenic 40.0%
CTCCAATCTAGTGTGTTGTA+GGG + Chr6:88636022-88636041 MsG0680034501.01.T01:intron 40.0%
GATTACCTCAACAGACCATT+AGG + Chr6:88633553-88633572 MsG0680034501.01.T01:CDS 40.0%
GCAACCTTTCAAAGTGACAT+AGG + Chr6:88634658-88634677 MsG0680034501.01.T01:intron 40.0%
GCATTAGTATGCAGTTTGAC+GGG + Chr6:88635439-88635458 MsG0680034501.01.T01:intron 40.0%
GCTACTTGGATTCATCCATT+GGG - Chr6:88636464-88636483 None:intergenic 40.0%
GGCATTAGTATGCAGTTTGA+CGG + Chr6:88635438-88635457 MsG0680034501.01.T01:intron 40.0%
TCAAACTGTATCCCATGATG+AGG + Chr6:88635415-88635434 MsG0680034501.01.T01:intron 40.0%
TCTCATCCAGGTACTTAGTT+TGG + Chr6:88634840-88634859 MsG0680034501.01.T01:intron 40.0%
TCTCCAATCTAGTGTGTTGT+AGG + Chr6:88636021-88636040 MsG0680034501.01.T01:intron 40.0%
TGCTCAAAAATAGCCTCGTT+CGG - Chr6:88633231-88633250 None:intergenic 40.0%
TGGAGATCTGCCAATTTAAC+TGG - Chr6:88635091-88635110 None:intergenic 40.0%
TGTAACTTATTACCTGCAGC+AGG - Chr6:88635136-88635155 None:intergenic 40.0%
TTAACTGGTATAACTCCGGA+TGG - Chr6:88636732-88636751 None:intergenic 40.0%
TTCAGAAACTTCAAGCGGAA+GGG - Chr6:88634801-88634820 None:intergenic 40.0%
TTCCATTTGGTATACGGTAG+AGG + Chr6:88636078-88636097 MsG0680034501.01.T01:intron 40.0%
TTGAAGATGACATCTCATCC+AGG + Chr6:88634828-88634847 MsG0680034501.01.T01:CDS 40.0%
! AAACCATACAGGGTGCTTAT+CGG - Chr6:88634064-88634083 None:intergenic 40.0%
! AATGGTAACGTCTCCATCAA+TGG - Chr6:88635588-88635607 None:intergenic 40.0%
! AGCGTGTTACTCTTTACTTC+TGG - Chr6:88634725-88634744 None:intergenic 40.0%
! CAAACTTTTAGTGTCCAGTC+AGG - Chr6:88634986-88635005 None:intergenic 40.0%
! TCTAGCTTCCTATTTACCAG+AGG + Chr6:88635617-88635636 MsG0680034501.01.T01:CDS 40.0%
! TTTGCTTTCTAGTACTGGAG+TGG + Chr6:88636116-88636135 MsG0680034501.01.T01:intron 40.0%
!! CACAGTTTTGTCTTTTCTGG+AGG + Chr6:88636365-88636384 MsG0680034501.01.T01:CDS 40.0%
!!! CTGATTCTTTGTTTTCCCCT+TGG + Chr6:88636332-88636351 MsG0680034501.01.T01:intron 40.0%
AAACAGACTCACGCATCTGT+AGG - Chr6:88633809-88633828 None:intergenic 45.0%
AAAGATGAAAGTAGCCTGCC+AGG - Chr6:88636486-88636505 None:intergenic 45.0%
AACTGTGAACTTGTCTGCCA+AGG - Chr6:88636352-88636371 None:intergenic 45.0%
AACTTGGTTGTCCCGAACTT+TGG + Chr6:88635031-88635050 MsG0680034501.01.T01:CDS 45.0%
ACTGTGAACTTGTCTGCCAA+GGG - Chr6:88636351-88636370 None:intergenic 45.0%
AGCATTCTTGATCCTGACGA+AGG + Chr6:88635231-88635250 MsG0680034501.01.T01:CDS 45.0%
AGCCTCTACCGTATACCAAA+TGG - Chr6:88636083-88636102 None:intergenic 45.0%
ATGGATGAATCCAAGTAGCC+TGG + Chr6:88636465-88636484 MsG0680034501.01.T01:intron 45.0%
ATGGGGCCACCATAATCAAA+TGG - Chr6:88634427-88634446 None:intergenic 45.0%
CATACTAATGCCCCTCATCA+TGG - Chr6:88635430-88635449 None:intergenic 45.0%
CATCAGGTTCTTCTTCACCA+AGG - Chr6:88634775-88634794 None:intergenic 45.0%
CTTCAGAAACTTCAAGCGGA+AGG - Chr6:88634802-88634821 None:intergenic 45.0%
GGAATCTAGGCAAGATGATC+AGG + Chr6:88636416-88636435 MsG0680034501.01.T01:CDS 45.0%
GGAGAAGTAACAACTACAGC+TGG - Chr6:88636006-88636025 None:intergenic 45.0%
GGCTACTTGGATTCATCCAT+TGG - Chr6:88636465-88636484 None:intergenic 45.0%
GTCCCTACAACACACTAGAT+TGG - Chr6:88636027-88636046 None:intergenic 45.0%
GTTGCATCCACACCAAAGTT+CGG - Chr6:88635046-88635065 None:intergenic 45.0%
GTTGGAAAGAGCTGCAAACT+TGG + Chr6:88635015-88635034 MsG0680034501.01.T01:intron 45.0%
TATCGGGTGCAAGTACATAC+CGG - Chr6:88634047-88634066 None:intergenic 45.0%
TCCTGACGAAGGTAATCACT+TGG + Chr6:88635242-88635261 MsG0680034501.01.T01:intron 45.0%
TCTCCAAGTCTGAGGAATCT+AGG + Chr6:88636403-88636422 MsG0680034501.01.T01:CDS 45.0%
TTCTCACTAACAGAGCTCCT+TGG + Chr6:88634755-88634774 MsG0680034501.01.T01:intron 45.0%
TTCTTCTTCTGGATGCAGGT+TGG + Chr6:88633390-88633409 MsG0680034501.01.T01:intron 45.0%
TTGCATCCACACCAAAGTTC+GGG - Chr6:88635045-88635064 None:intergenic 45.0%
TTGCCTAGATTCCTCAGACT+TGG - Chr6:88636409-88636428 None:intergenic 45.0%
! AACCATACAGGGTGCTTATC+GGG - Chr6:88634063-88634082 None:intergenic 45.0%
! CTATATGTCGAGTTGCCATC+CGG + Chr6:88636714-88636733 MsG0680034501.01.T01:three_prime_UTR 45.0%
! GAATCTACTTGCTGACGGAA+AGG - Chr6:88635761-88635780 None:intergenic 45.0%
!!! GAACGAGGCTATTTTTGAGC+AGG + Chr6:88633230-88633249 MsG0680034501.01.T01:CDS 45.0%
AGAATTGCAGGATCGTCCAC+TGG - Chr6:88633641-88633660 None:intergenic 50.0%
ATGAATCCAAGTAGCCTGGC+AGG + Chr6:88636469-88636488 MsG0680034501.01.T01:intron 50.0%
CTGTGAACTTGTCTGCCAAG+GGG - Chr6:88636350-88636369 None:intergenic 50.0%
GCCAAGTGATTACCTTCGTC+AGG - Chr6:88635246-88635265 None:intergenic 50.0%
GGATTCTGTCTCCAAGTCTG+AGG + Chr6:88636395-88636414 MsG0680034501.01.T01:CDS 50.0%
TCAAGCGGAAGGGATACATC+AGG - Chr6:88634791-88634810 None:intergenic 50.0%
TGTAGGTTTCAGGCGTGTGT+AGG + Chr6:88636198-88636217 MsG0680034501.01.T01:intron 50.0%
! ACGTGTAAGCCTTATGCCAG+TGG + Chr6:88633622-88633641 MsG0680034501.01.T01:intron 50.0%
! CTACTTGCTGACGGAAAGGT+GGG - Chr6:88635757-88635776 None:intergenic 50.0%
! TCTACTTGCTGACGGAAAGG+TGG - Chr6:88635758-88635777 None:intergenic 50.0%
!! AAGTACATACCGGCTCTACG+TGG - Chr6:88634037-88634056 None:intergenic 50.0%
!! AGTACATACCGGCTCTACGT+GGG - Chr6:88634036-88634055 None:intergenic 50.0%
!! GTCTTTTCTGGAGGCTCTTG+AGG + Chr6:88636374-88636393 MsG0680034501.01.T01:CDS 50.0%
AAGTAGCCTGCCAGGCTACT+TGG - Chr6:88636478-88636497 None:intergenic 55.0%
AGCAACATTGGACCTGCTGC+AGG + Chr6:88635121-88635140 MsG0680034501.01.T01:CDS 55.0%
ATTGGGTACCCACGTAGAGC+CGG + Chr6:88634025-88634044 MsG0680034501.01.T01:intron 55.0%
CACCCGATAAGCACCCTGTA+TGG + Chr6:88634058-88634077 MsG0680034501.01.T01:intron 55.0%
CAGGATCGTCCACTGGCATA+AGG - Chr6:88633634-88633653 None:intergenic 55.0%
GAAGCTAGACGCTGCTCCAA+TGG - Chr6:88635606-88635625 None:intergenic 55.0%
GGTTGTCCCGAACTTTGGTG+TGG + Chr6:88635036-88635055 MsG0680034501.01.T01:CDS 55.0%
TCGCTGCAGGTACTTCGAAC+AGG + Chr6:88635864-88635883 MsG0680034501.01.T01:intron 55.0%
Chromosome Type Strat End Strand Name
Chr6 gene 88633210 88636804 88633210 ID=MsG0680034501.01;Name=MsG0680034501.01
Chr6 mRNA 88633210 88636804 88633210 ID=MsG0680034501.01.T01;Parent=MsG0680034501.01;Name=MsG0680034501.01.T01;_AED=0.49;_eAED=0.50;_QI=0|0.77|0.7|1|0.66|0.7|10|322|262
Chr6 exon 88633210 88633251 88633210 ID=MsG0680034501.01.T01:exon:34898;Parent=MsG0680034501.01.T01
Chr6 exon 88633333 88633407 88633333 ID=MsG0680034501.01.T01:exon:34899;Parent=MsG0680034501.01.T01
Chr6 CDS 88633210 88633251 88633210 ID=MsG0680034501.01.T01:cds;Parent=MsG0680034501.01.T01
Chr6 CDS 88633333 88633407 88633333 ID=MsG0680034501.01.T01:cds;Parent=MsG0680034501.01.T01
Chr6 CDS 88633508 88633574 88633508 ID=MsG0680034501.01.T01:cds;Parent=MsG0680034501.01.T01
Chr6 CDS 88634768 88634849 88634768 ID=MsG0680034501.01.T01:cds;Parent=MsG0680034501.01.T01
Chr6 CDS 88635024 88635142 88635024 ID=MsG0680034501.01.T01:cds;Parent=MsG0680034501.01.T01
Chr6 CDS 88635229 88635252 88635229 ID=MsG0680034501.01.T01:cds;Parent=MsG0680034501.01.T01
Chr6 CDS 88635544 88635654 88635544 ID=MsG0680034501.01.T01:cds;Parent=MsG0680034501.01.T01
Chr6 CDS 88635714 88635802 88635714 ID=MsG0680034501.01.T01:cds;Parent=MsG0680034501.01.T01
Chr6 CDS 88635873 88635927 88635873 ID=MsG0680034501.01.T01:cds;Parent=MsG0680034501.01.T01
Chr6 CDS 88636358 88636482 88636358 ID=MsG0680034501.01.T01:cds;Parent=MsG0680034501.01.T01
Chr6 three_prime_UTR 88636483 88636804 88636483 ID=MsG0680034501.01.T01:three_prime_utr;Parent=MsG0680034501.01.T01
Chr6 mRNA 88633324 88636804 88633324 ID=MsG0680034501.01.T02;Parent=MsG0680034501.01;Name=MsG0680034501.01.T02;_AED=0.49;_eAED=0.50;_QI=78|0.75|0.77|1|0.75|0.77|9|322|225
Chr6 exon 88633324 88633407 88633324 ID=MsG0680034501.01.T02:exon:34908;Parent=MsG0680034501.01.T02
Chr6 five_prime_UTR 88633324 88633401 88633324 ID=MsG0680034501.01.T02:five_prime_utr;Parent=MsG0680034501.01.T02
Chr6 CDS 88633402 88633407 88633402 ID=MsG0680034501.01.T02:cds;Parent=MsG0680034501.01.T02
Chr6 CDS 88633508 88633574 88633508 ID=MsG0680034501.01.T02:cds;Parent=MsG0680034501.01.T02
Chr6 CDS 88634768 88634849 88634768 ID=MsG0680034501.01.T02:cds;Parent=MsG0680034501.01.T02
Chr6 CDS 88635024 88635142 88635024 ID=MsG0680034501.01.T02:cds;Parent=MsG0680034501.01.T02
Chr6 CDS 88635229 88635252 88635229 ID=MsG0680034501.01.T02:cds;Parent=MsG0680034501.01.T02
Chr6 CDS 88635544 88635654 88635544 ID=MsG0680034501.01.T02:cds;Parent=MsG0680034501.01.T02
Chr6 CDS 88635714 88635802 88635714 ID=MsG0680034501.01.T02:cds;Parent=MsG0680034501.01.T02
Chr6 CDS 88635873 88635927 88635873 ID=MsG0680034501.01.T02:cds;Parent=MsG0680034501.01.T02
Chr6 CDS 88636358 88636482 88636358 ID=MsG0680034501.01.T02:cds;Parent=MsG0680034501.01.T02
Chr6 three_prime_UTR 88636483 88636804 88636483 ID=MsG0680034501.01.T02:three_prime_utr;Parent=MsG0680034501.01.T02
Gene Sequence

>MsG0680034501.01.T02

ATGCAGGAATCTAATGCTGATAATGACTCGCAACTGTGTAGCTCTGTGAATGATTACCTCAACAGACCATTAGAGCTCCTTGGTGAAGAAGAACCTGATGTATCCCTTCCGCTTGAAGTTTCTGAAGATACTGTTGAAGATGACATCTCATCCAGAGCTGCAAACTTGGTTGTCCCGAACTTTGGTGTGGATGCAACTAGCGATGTAACATCTTCTGGTCCAGTTAAATTGGCAGATCTCCAGAGAATATTGAGCAACATTGGACCTGCTGCAGATAGCATTCTTGATCCTGACGAAGGCTTTGAACTCGGTGACATTTTGAAGCCTGATCTGATATTGCCATTGATGGAGACGTTACCATTGGAGCAGCGTCTAGCTTCCTATTTACCAGAGGTAATGTTATACCAATGTACTTGGTCTCCAGAAGATATATTGGAGTTGTTGCAGAGCCCACCTTTCCGTCAGCAAGTAGATTCTTTTACTTATGTAAAGGCTGCTGTACTTCGAACAGGACAGATAGATTTGTCCCAGTTTGGAATTGATCCAAGTAAATACAAGTTCACAGTTTTGTCTTTTCTGGAGGCTCTTGAGGATTCTGTCTCCAAGTCTGAGGAATCTAGGCAAGATGATCAGGAATTAATATCTCAATCTTGTACCCCAATGGATGAATCCAAGTAG

>MsG0680034501.01.T01

CAGGATCAGATAATATTTCCGAACGAGGCTATTTTTGAGCAGGTTAATCAAACATCTGGAAGGGTTTACATATTGAAGTTTAATAGCGATGACAGAAAGTTCTTCTTCTGGATGCAGGAATCTAATGCTGATAATGACTCGCAACTGTGTAGCTCTGTGAATGATTACCTCAACAGACCATTAGAGCTCCTTGGTGAAGAAGAACCTGATGTATCCCTTCCGCTTGAAGTTTCTGAAGATACTGTTGAAGATGACATCTCATCCAGAGCTGCAAACTTGGTTGTCCCGAACTTTGGTGTGGATGCAACTAGCGATGTAACATCTTCTGGTCCAGTTAAATTGGCAGATCTCCAGAGAATATTGAGCAACATTGGACCTGCTGCAGATAGCATTCTTGATCCTGACGAAGGCTTTGAACTCGGTGACATTTTGAAGCCTGATCTGATATTGCCATTGATGGAGACGTTACCATTGGAGCAGCGTCTAGCTTCCTATTTACCAGAGGTAATGTTATACCAATGTACTTGGTCTCCAGAAGATATATTGGAGTTGTTGCAGAGCCCACCTTTCCGTCAGCAAGTAGATTCTTTTACTTATGTAAAGGCTGCTGTACTTCGAACAGGACAGATAGATTTGTCCCAGTTTGGAATTGATCCAAGTAAATACAAGTTCACAGTTTTGTCTTTTCTGGAGGCTCTTGAGGATTCTGTCTCCAAGTCTGAGGAATCTAGGCAAGATGATCAGGAATTAATATCTCAATCTTGTACCCCAATGGATGAATCCAAGTAG
Protein sequence

>MsG0680034501.01.T02

MQESNADNDSQLCSSVNDYLNRPLELLGEEEPDVSLPLEVSEDTVEDDISSRAANLVVPNFGVDATSDVTSSGPVKLADLQRILSNIGPAADSILDPDEGFELGDILKPDLILPLMETLPLEQRLASYLPEVMLYQCTWSPEDILELLQSPPFRQQVDSFTYVKAAVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKSEESRQDDQELISQSCTPMDESK*

>MsG0680034501.01.T01

QDQIIFPNEAIFEQVNQTSGRVYILKFNSDDRKFFFWMQESNADNDSQLCSSVNDYLNRPLELLGEEEPDVSLPLEVSEDTVEDDISSRAANLVVPNFGVDATSDVTSSGPVKLADLQRILSNIGPAADSILDPDEGFELGDILKPDLILPLMETLPLEQRLASYLPEVMLYQCTWSPEDILELLQSPPFRQQVDSFTYVKAAVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKSEESRQDDQELISQSCTPMDESK*