Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680031361.01.T02 | KEH25370.1 | 98.901 | 91 | 1 | 0 | 10 | 100 | 164 | 254 | 1.11E-57 | 188 |
| MsG0680031361.01.T01 | KEH25370.1 | 98.901 | 91 | 1 | 0 | 10 | 100 | 164 | 254 | 1.11E-57 | 188 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680031361.01.T01 | O82567 | 81.72 | 93 | 17 | 0 | 8 | 100 | 297 | 389 | 8.19E-49 | 162 |
| MsG0680031361.01.T02 | O82567 | 81.72 | 93 | 17 | 0 | 8 | 100 | 297 | 389 | 8.19E-49 | 162 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680031361.01.T01 | A0A072UHX6 | 98.901 | 91 | 1 | 0 | 10 | 100 | 164 | 254 | 5.30e-58 | 188 |
| MsG0680031361.01.T02 | A0A072UHX6 | 98.901 | 91 | 1 | 0 | 10 | 100 | 164 | 254 | 5.30e-58 | 188 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048306.01 | MsG0680031361.01 | 0.830960 | 2.187302e-55 | 2.340213e-52 |
| MsG0080048600.01 | MsG0680031361.01 | 0.801691 | 7.990478e-49 | 3.840273e-46 |
| MsG0180000550.01 | MsG0680031361.01 | 0.802871 | 4.566951e-49 | 2.261950e-46 |
| MsG0180000777.01 | MsG0680031361.01 | 0.812872 | 3.406263e-51 | 2.190547e-48 |
| MsG0180000835.01 | MsG0680031361.01 | 0.810292 | 1.239521e-50 | 7.442588e-48 |
| MsG0180002460.01 | MsG0680031361.01 | 0.806169 | 9.374568e-50 | 5.053632e-47 |
| MsG0180004389.01 | MsG0680031361.01 | 0.832443 | 9.427373e-56 | 1.053871e-52 |
| MsG0180004509.01 | MsG0680031361.01 | 0.815155 | 1.068799e-51 | 7.311446e-49 |
| MsG0180004765.01 | MsG0680031361.01 | 0.804130 | 2.503483e-49 | 1.280623e-46 |
| MsG0180004975.01 | MsG0680031361.01 | 0.804663 | 1.938889e-49 | 1.005522e-46 |
| MsG0180005799.01 | MsG0680031361.01 | 0.822398 | 2.420442e-53 | 2.023721e-50 |
| MsG0180005990.01 | MsG0680031361.01 | 0.800959 | 1.128085e-48 | 5.322901e-46 |
| MsG0180006261.01 | MsG0680031361.01 | 0.839175 | 1.854274e-57 | 2.539928e-54 |
| MsG0280006299.01 | MsG0680031361.01 | 0.835798 | 1.360212e-56 | 1.681326e-53 |
| MsG0280006324.01 | MsG0680031361.01 | 0.816798 | 4.592707e-52 | 3.286422e-49 |
| MsG0280006405.01 | MsG0680031361.01 | 0.810638 | 1.043301e-50 | 6.322541e-48 |
| MsG0280006407.01 | MsG0680031361.01 | 0.832281 | 1.034034e-55 | 1.150246e-52 |
| MsG0280010722.01 | MsG0680031361.01 | 0.800251 | 1.572973e-48 | 7.289502e-46 |
| MsG0280010778.01 | MsG0680031361.01 | 0.802394 | 5.729172e-49 | 2.803373e-46 |
| MsG0280011101.01 | MsG0680031361.01 | 0.808831 | 2.552959e-50 | 1.474749e-47 |
| MsG0280011175.01 | MsG0680031361.01 | 0.828527 | 8.553895e-55 | 8.524522e-52 |
| MsG0280011339.01 | MsG0680031361.01 | 0.824096 | 9.710802e-54 | 8.517856e-51 |
| MsG0380013178.01 | MsG0680031361.01 | 0.807832 | 4.168748e-50 | 2.345826e-47 |
| MsG0380014173.01 | MsG0680031361.01 | 0.851680 | 7.578744e-61 | 1.545965e-57 |
| MsG0380014537.01 | MsG0680031361.01 | 0.826715 | 2.330313e-54 | 2.202624e-51 |
| MsG0380014876.01 | MsG0680031361.01 | 0.808447 | 3.083043e-50 | 1.763319e-47 |
| MsG0680030882.01 | MsG0680031361.01 | 0.826731 | 2.309613e-54 | 2.184121e-51 |
| MsG0680031361.01 | MsG0680031488.01 | 0.846586 | 1.979636e-59 | 3.423679e-56 |
| MsG0680031361.01 | MsG0680032809.01 | 0.832204 | 1.080304e-55 | 1.199067e-52 |
| MsG0680031361.01 | MsG0680034230.01 | 0.803499 | 3.386102e-49 | 1.704306e-46 |
| MsG0680031361.01 | MsG0680034501.01 | 0.850703 | 1.430729e-60 | 2.826834e-57 |
| MsG0680031361.01 | MsG0780039063.01 | 0.805939 | 1.047692e-49 | 5.614819e-47 |
| MsG0680031361.01 | MsG0780039808.01 | 0.807740 | 4.360609e-50 | 2.448000e-47 |
| MsG0680031361.01 | MsG0780039844.01 | 0.818573 | 1.827041e-52 | 1.372650e-49 |
| MsG0680031361.01 | MsG0780041416.01 | 0.822708 | 2.050526e-53 | 1.729519e-50 |
| MsG0680031361.01 | MsG0780041507.01 | 0.825543 | 4.427708e-54 | 4.047675e-51 |
| MsG0680031361.01 | MsG0880042108.01 | 0.801473 | 8.856236e-49 | 4.233172e-46 |
| MsG0680031361.01 | MsG0880043616.01 | 0.827258 | 1.727912e-54 | 1.659517e-51 |
| MsG0680031361.01 | MsG0880044728.01 | 0.810454 | 1.143379e-50 | 6.894853e-48 |
| MsG0680031361.01 | MsG0880045111.01 | 0.801614 | 8.285755e-49 | 3.974444e-46 |
| MsG0680031361.01 | MsG0880045736.01 | 0.805003 | 1.646109e-49 | 8.611970e-47 |
| MsG0680031361.01 | MsG0880045937.01 | 0.823822 | 1.126081e-53 | 9.802382e-51 |
| MsG0680031361.01 | MsG0880046458.01 | 0.818035 | 2.418318e-52 | 1.790128e-49 |
| MsG0680031361.01 | MsG0880046620.01 | 0.824510 | 7.764580e-54 | 6.891774e-51 |
| MsG0480018779.01 | MsG0680031361.01 | 0.816275 | 6.012981e-52 | 4.241977e-49 |
| MsG0480019125.01 | MsG0680031361.01 | 0.831685 | 1.451097e-55 | 1.586355e-52 |
| MsG0480019416.01 | MsG0680031361.01 | 0.837758 | 4.302731e-57 | 5.645360e-54 |
| MsG0480021136.01 | MsG0680031361.01 | 0.818784 | 1.636118e-52 | 1.236440e-49 |
| MsG0480021558.01 | MsG0680031361.01 | 0.803236 | 3.838417e-49 | 1.918865e-46 |
| MsG0480021750.01 | MsG0680031361.01 | 0.838462 | 2.834903e-57 | 3.799945e-54 |
| MsG0480022488.01 | MsG0680031361.01 | 0.803040 | 4.214520e-49 | 2.096308e-46 |
| MsG0480022795.01 | MsG0680031361.01 | 0.836648 | 8.271360e-57 | 1.048841e-53 |
| MsG0480023163.01 | MsG0680031361.01 | 0.821490 | 3.926669e-53 | 3.199170e-50 |
| MsG0480023489.01 | MsG0680031361.01 | 0.842600 | 2.342690e-58 | 3.570044e-55 |
| MsG0480023636.01 | MsG0680031361.01 | 0.844665 | 6.568407e-59 | 1.067990e-55 |
| MsG0580025556.01 | MsG0680031361.01 | 0.804326 | 2.279466e-49 | 1.171911e-46 |
| MsG0380015164.01 | MsG0680031361.01 | 0.804254 | 2.359560e-49 | 1.210789e-46 |
| MsG0380015435.01 | MsG0680031361.01 | 0.807663 | 4.527602e-50 | 2.536520e-47 |
| MsG0380015555.01 | MsG0680031361.01 | 0.832122 | 1.131861e-55 | 1.253258e-52 |
| MsG0380015566.01 | MsG0680031361.01 | 0.821224 | 4.523978e-53 | 3.658825e-50 |
| MsG0380015590.01 | MsG0680031361.01 | 0.804390 | 2.210537e-49 | 1.138334e-46 |
| MsG0380015631.01 | MsG0680031361.01 | 0.817070 | 3.989723e-52 | 2.876439e-49 |
| MsG0380015778.01 | MsG0680031361.01 | 0.812215 | 4.742569e-51 | 2.997455e-48 |
| MsG0380016529.01 | MsG0680031361.01 | 0.814780 | 1.293840e-51 | 8.761884e-49 |
| MsG0380016695.01 | MsG0680031361.01 | 0.802515 | 5.409500e-49 | 2.654940e-46 |
| MsG0380017176.01 | MsG0680031361.01 | 0.813498 | 2.482853e-51 | 1.624124e-48 |
| MsG0380017369.01 | MsG0680031361.01 | 0.808101 | 3.654876e-50 | 2.071289e-47 |
| MsG0380017461.01 | MsG0680031361.01 | 0.807635 | 4.590271e-50 | 2.569812e-47 |
| MsG0380017543.01 | MsG0680031361.01 | 0.805075 | 1.590167e-49 | 8.334761e-47 |
| MsG0380017947.01 | MsG0680031361.01 | 0.807406 | 5.133305e-50 | 2.856866e-47 |
| MsG0580026086.01 | MsG0680031361.01 | 0.810044 | 1.401743e-50 | 8.363086e-48 |
| MsG0280006593.01 | MsG0680031361.01 | 0.830719 | 2.506721e-55 | 2.663036e-52 |
| MsG0280006699.01 | MsG0680031361.01 | 0.814320 | 1.636387e-51 | 1.094522e-48 |
| MsG0280010434.01 | MsG0680031361.01 | 0.805102 | 1.570034e-49 | 8.234796e-47 |
| MsG0280010489.01 | MsG0680031361.01 | 0.831793 | 1.364529e-55 | 1.496652e-52 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680031361.01.T02 | MTR_6g018970 | 98.901 | 91 | 1 | 0 | 10 | 100 | 164 | 254 | 1.34e-61 | 188 |
| MsG0680031361.01.T02 | MTR_6g018970 | 98.901 | 91 | 1 | 0 | 10 | 100 | 251 | 341 | 2.81e-60 | 187 |
| MsG0680031361.01.T02 | MTR_3g009730 | 86.813 | 91 | 12 | 0 | 10 | 100 | 263 | 353 | 8.37e-54 | 171 |
| MsG0680031361.01.T02 | MTR_3g009730 | 86.813 | 91 | 12 | 0 | 10 | 100 | 285 | 375 | 1.55e-53 | 171 |
| MsG0680031361.01.T02 | MTR_3g009730 | 86.813 | 91 | 12 | 0 | 10 | 100 | 298 | 388 | 5.15e-53 | 170 |
| MsG0680031361.01.T01 | MTR_6g018970 | 98.901 | 91 | 1 | 0 | 10 | 100 | 164 | 254 | 1.34e-61 | 188 |
| MsG0680031361.01.T01 | MTR_6g018970 | 98.901 | 91 | 1 | 0 | 10 | 100 | 251 | 341 | 2.81e-60 | 187 |
| MsG0680031361.01.T01 | MTR_3g009730 | 86.813 | 91 | 12 | 0 | 10 | 100 | 263 | 353 | 8.37e-54 | 171 |
| MsG0680031361.01.T01 | MTR_3g009730 | 86.813 | 91 | 12 | 0 | 10 | 100 | 285 | 375 | 1.55e-53 | 171 |
| MsG0680031361.01.T01 | MTR_3g009730 | 86.813 | 91 | 12 | 0 | 10 | 100 | 298 | 388 | 5.15e-53 | 170 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680031361.01.T02 | AT1G13560 | 83.516 | 91 | 15 | 0 | 10 | 100 | 256 | 346 | 2.30e-50 | 162 |
| MsG0680031361.01.T02 | AT1G13560 | 83.516 | 91 | 15 | 0 | 10 | 100 | 251 | 341 | 2.70e-50 | 162 |
| MsG0680031361.01.T02 | AT3G25585 | 81.720 | 93 | 17 | 0 | 8 | 100 | 245 | 337 | 3.65e-50 | 161 |
| MsG0680031361.01.T02 | AT3G25585 | 81.720 | 93 | 17 | 0 | 8 | 100 | 249 | 341 | 3.97e-50 | 161 |
| MsG0680031361.01.T02 | AT3G25585 | 81.720 | 93 | 17 | 0 | 8 | 100 | 249 | 341 | 3.97e-50 | 161 |
| MsG0680031361.01.T02 | AT1G13560 | 81.720 | 93 | 17 | 0 | 8 | 100 | 297 | 389 | 8.35e-50 | 162 |
| MsG0680031361.01.T02 | AT3G25585 | 81.720 | 93 | 17 | 0 | 8 | 100 | 297 | 389 | 1.05e-49 | 161 |
| MsG0680031361.01.T02 | AT3G25585 | 81.720 | 93 | 17 | 0 | 8 | 100 | 297 | 389 | 1.05e-49 | 161 |
| MsG0680031361.01.T02 | AT3G25585 | 81.720 | 93 | 17 | 0 | 8 | 100 | 297 | 389 | 1.05e-49 | 161 |
| MsG0680031361.01.T01 | AT1G13560 | 83.516 | 91 | 15 | 0 | 10 | 100 | 256 | 346 | 2.30e-50 | 162 |
| MsG0680031361.01.T01 | AT1G13560 | 83.516 | 91 | 15 | 0 | 10 | 100 | 251 | 341 | 2.70e-50 | 162 |
| MsG0680031361.01.T01 | AT3G25585 | 81.720 | 93 | 17 | 0 | 8 | 100 | 245 | 337 | 3.65e-50 | 161 |
| MsG0680031361.01.T01 | AT3G25585 | 81.720 | 93 | 17 | 0 | 8 | 100 | 249 | 341 | 3.97e-50 | 161 |
| MsG0680031361.01.T01 | AT3G25585 | 81.720 | 93 | 17 | 0 | 8 | 100 | 249 | 341 | 3.97e-50 | 161 |
| MsG0680031361.01.T01 | AT1G13560 | 81.720 | 93 | 17 | 0 | 8 | 100 | 297 | 389 | 8.35e-50 | 162 |
| MsG0680031361.01.T01 | AT3G25585 | 81.720 | 93 | 17 | 0 | 8 | 100 | 297 | 389 | 1.05e-49 | 161 |
| MsG0680031361.01.T01 | AT3G25585 | 81.720 | 93 | 17 | 0 | 8 | 100 | 297 | 389 | 1.05e-49 | 161 |
| MsG0680031361.01.T01 | AT3G25585 | 81.720 | 93 | 17 | 0 | 8 | 100 | 297 | 389 | 1.05e-49 | 161 |
Find 15 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTTAATATGAATTTAAA+AGG | 0.245275 | 6:+18912127 | MsG0680031361.01.T01:three_prime_UTR |
| AATCTACCAAGATTTCATTT+AGG | 0.298754 | 6:+18911541 | MsG0680031361.01.T01:exon |
| GAGAACTACTGGCAAGGTTT+TGG | 0.326313 | 6:+18911991 | MsG0680031361.01.T01:three_prime_UTR |
| TACTTGTCTAAAATCACTTT+TGG | 0.328559 | 6:-18911628 | None:intergenic |
| TTATGTATTGATTCTTAGAT+AGG | 0.338868 | 6:+18912047 | MsG0680031361.01.T01:three_prime_UTR |
| GGCATACCTAAATGAAATCT+TGG | 0.392925 | 6:-18911547 | None:intergenic |
| TGTTCCATTGCAGGATAACT+AGG | 0.421949 | 6:+18911507 | MsG0680031361.01.T01:intron |
| CTCGACCAATGAATTAGAAA+AGG | 0.434710 | 6:-18911569 | None:intergenic |
| TATTGATTCTTAGATAGGTT+AGG | 0.473920 | 6:+18912052 | MsG0680031361.01.T01:three_prime_UTR |
| TTGCAAGTCAAGAGAACTAC+TGG | 0.491956 | 6:+18911980 | MsG0680031361.01.T01:three_prime_UTR |
| TCGACCAATGAATTAGAAAA+GGG | 0.542526 | 6:-18911568 | None:intergenic |
| TAACATGAATATATTCATAG+TGG | 0.572401 | 6:-18912105 | None:intergenic |
| TAGGTTAGGAGATTTATTTG+TGG | 0.577074 | 6:+18912066 | MsG0680031361.01.T01:three_prime_UTR |
| CCATTGCAGGATAACTAGGA+AGG | 0.604804 | 6:+18911511 | MsG0680031361.01.T01:intron |
| AGTCAAGAGAACTACTGGCA+AGG | 0.657706 | 6:+18911985 | MsG0680031361.01.T01:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCATGTATCTTAAAAAAT+TGG | - | Chr6:18910118-18910137 | None:intergenic | 15.0% |
| !! | ATCATGTATCTTAAAAAATT+GGG | - | Chr6:18910117-18910136 | None:intergenic | 15.0% |
| !! | CATACATTAAAAATAAAAAG+AGG | - | Chr6:18912159-18912178 | None:intergenic | 15.0% |
| !! | TAATATCACTTTAATGAATT+TGG | - | Chr6:18910400-18910419 | None:intergenic | 15.0% |
| !! | TAGTCATATAATTTATAATG+AGG | - | Chr6:18910160-18910179 | None:intergenic | 15.0% |
| !! | TTGGAAATTTATTAATTCAA+GGG | + | Chr6:18910880-18910899 | MsG0680031361.01.T01:intron | 15.0% |
| !! | TTTAGAGAAAAAATTATGTT+TGG | - | Chr6:18911747-18911766 | None:intergenic | 15.0% |
| !!! | AGCTTTAATATGAATTTAAA+AGG | + | Chr6:18912127-18912146 | MsG0680031361.01.T01:three_prime_UTR | 15.0% |
| !!! | ATACATGATTTTTTCATATT+TGG | + | Chr6:18910128-18910147 | MsG0680031361.01.T01:intron | 15.0% |
| !!! | GAAATTGTTTGATATATTTT+TGG | + | Chr6:18910611-18910630 | MsG0680031361.01.T01:intron | 15.0% |
| !! | AAGTATATATGTATTCATGT+CGG | + | Chr6:18911409-18911428 | MsG0680031361.01.T01:intron | 20.0% |
| !! | CTTGGAAATTTATTAATTCA+AGG | + | Chr6:18910879-18910898 | MsG0680031361.01.T01:intron | 20.0% |
| !! | GATAAAATAACATCAATCAA+AGG | - | Chr6:18910583-18910602 | None:intergenic | 20.0% |
| !! | TAACATGAATATATTCATAG+TGG | - | Chr6:18912108-18912127 | None:intergenic | 20.0% |
| !!! | ATCGATTACATTTATTCTTT+TGG | + | Chr6:18910784-18910803 | MsG0680031361.01.T01:intron | 20.0% |
| !!! | GATCATTTTAATTAATTGTG+TGG | - | Chr6:18910748-18910767 | None:intergenic | 20.0% |
| !!! | TTATGTATTGATTCTTAGAT+AGG | + | Chr6:18912047-18912066 | MsG0680031361.01.T01:three_prime_UTR | 20.0% |
| !!! | TTTTTGTTGAACTTTGTTTT+TGG | + | Chr6:18911190-18911209 | MsG0680031361.01.T01:intron | 20.0% |
| ! | AAAAGTGAATCAACAAAACA+TGG | - | Chr6:18911945-18911964 | None:intergenic | 25.0% |
| ! | AATCTACCAAGATTTCATTT+AGG | + | Chr6:18911541-18911560 | MsG0680031361.01.T01:exon | 25.0% |
| ! | AGAGAAAAAATTATGTTTGG+AGG | - | Chr6:18911744-18911763 | None:intergenic | 25.0% |
| ! | ATCAAAGGAATTTAGATCAA+AGG | - | Chr6:18910568-18910587 | None:intergenic | 25.0% |
| ! | ATGAATTCTAGCACAAAATT+AGG | + | Chr6:18911704-18911723 | MsG0680031361.01.T01:intron | 25.0% |
| ! | CATAAATTCAACTCATGTAT+TGG | - | Chr6:18910200-18910219 | None:intergenic | 25.0% |
| ! | CTAAATTAGTGTCTAATGTA+TGG | + | Chr6:18911145-18911164 | MsG0680031361.01.T01:intron | 25.0% |
| ! | TATGATTCCATCTTCAAAAA+AGG | + | Chr6:18912175-18912194 | MsG0680031361.01.T01:three_prime_UTR | 25.0% |
| ! | TGCAATATCAATGATTAAAC+CGG | - | Chr6:18910707-18910726 | None:intergenic | 25.0% |
| ! | TTCTTATGACCTATATAATG+CGG | - | Chr6:18911456-18911475 | None:intergenic | 25.0% |
| ! | TTTAGATAAACTTATGTGTG+AGG | - | Chr6:18911361-18911380 | None:intergenic | 25.0% |
| !! | ATCGATGATTTTCAATTTCA+TGG | - | Chr6:18910770-18910789 | None:intergenic | 25.0% |
| !! | TCAATACTAATTTTGCTACA+AGG | + | Chr6:18912014-18912033 | MsG0680031361.01.T01:three_prime_UTR | 25.0% |
| !!! | AACTTTGTTTTTGGAAAAGT+TGG | + | Chr6:18911199-18911218 | MsG0680031361.01.T01:intron | 25.0% |
| !!! | GATGTTATTTTATCTTCTCA+TGG | + | Chr6:18910589-18910608 | MsG0680031361.01.T01:intron | 25.0% |
| !!! | TACTTGTCTAAAATCACTTT+TGG | - | Chr6:18911631-18911650 | None:intergenic | 25.0% |
| !!! | TATTGATTCTTAGATAGGTT+AGG | + | Chr6:18912052-18912071 | MsG0680031361.01.T01:three_prime_UTR | 25.0% |
| !!! | TGTTTGATATATTTTTGGCA+GGG | + | Chr6:18910616-18910635 | MsG0680031361.01.T01:intron | 25.0% |
| !!! | TTGTTTGATATATTTTTGGC+AGG | + | Chr6:18910615-18910634 | MsG0680031361.01.T01:intron | 25.0% |
| CTATGTTATCCGCATTATAT+AGG | + | Chr6:18911444-18911463 | MsG0680031361.01.T01:intron | 30.0% | |
| GGTTTAATCATTGATATTGC+AGG | + | Chr6:18910706-18910725 | MsG0680031361.01.T01:intron | 30.0% | |
| TAGGTTAGGAGATTTATTTG+TGG | + | Chr6:18912066-18912085 | MsG0680031361.01.T01:three_prime_UTR | 30.0% | |
| TATCAATGATTAAACCGGTA+CGG | - | Chr6:18910702-18910721 | None:intergenic | 30.0% | |
| TCGACCAATGAATTAGAAAA+GGG | - | Chr6:18911571-18911590 | None:intergenic | 30.0% | |
| TTCCATCTTCAAAAAAGGTA+TGG | + | Chr6:18912180-18912199 | MsG0680031361.01.T01:three_prime_UTR | 30.0% | |
| ! | ACTAGTCTCTCATTAACTAA+AGG | - | Chr6:18910644-18910663 | None:intergenic | 30.0% |
| ! | TATGCCCTTTTCTAATTCAT+TGG | + | Chr6:18911564-18911583 | MsG0680031361.01.T01:intron | 30.0% |
| !! | ATTCCAGTTTTTAAGCCTTT+TGG | - | Chr6:18910056-18910075 | None:intergenic | 30.0% |
| !! | TTTAGTTCTTCGTATTGTAG+AGG | - | Chr6:18910920-18910939 | None:intergenic | 30.0% |
| !!! | AACCATACCTTTTTTGAAGA+TGG | - | Chr6:18912185-18912204 | None:intergenic | 30.0% |
| !!! | ACGTGTCAAAGGTTTTTTTT+AGG | - | Chr6:18911328-18911347 | None:intergenic | 30.0% |
| AAAAAACCTTTGACACGTCT+TGG | + | Chr6:18911330-18911349 | MsG0680031361.01.T01:intron | 35.0% | |
| AATCAACAAAACATGGACAG+AGG | - | Chr6:18911938-18911957 | None:intergenic | 35.0% | |
| CACTTATGTGATGAACCAAA+AGG | + | Chr6:18910038-18910057 | MsG0680031361.01.T01:CDS | 35.0% | |
| CTCGACCAATGAATTAGAAA+AGG | - | Chr6:18911572-18911591 | None:intergenic | 35.0% | |
| CTTAAAAACTGGAATGTGCA+TGG | + | Chr6:18910061-18910080 | MsG0680031361.01.T01:CDS | 35.0% | |
| GAACCAAAAGGCTTAAAAAC+TGG | + | Chr6:18910050-18910069 | MsG0680031361.01.T01:CDS | 35.0% | |
| GGCATACCTAAATGAAATCT+TGG | - | Chr6:18911550-18911569 | None:intergenic | 35.0% | |
| TTATCCTGCAATGGAACAAT+AGG | - | Chr6:18911505-18911524 | None:intergenic | 35.0% | |
| TTTCAGTTTCAACGATGTCT+TGG | + | Chr6:18910861-18910880 | MsG0680031361.01.T01:intron | 35.0% | |
| TTTGCAGAAACAGAATCATC+AGG | - | Chr6:18911032-18911051 | None:intergenic | 35.0% | |
| ! | AATGAGAGACTAGTTCTTCT+TGG | + | Chr6:18910650-18910669 | MsG0680031361.01.T01:CDS | 35.0% |
| ! | CTTTTCTAATTCATTGGTCG+AGG | + | Chr6:18911570-18911589 | MsG0680031361.01.T01:intron | 35.0% |
| ! | GAGGTTATTCGACATTTTCT+TGG | + | Chr6:18911589-18911608 | MsG0680031361.01.T01:intron | 35.0% |
| ! | GATAGAAGCTCAATTTTGCA+GGG | + | Chr6:18909999-18910018 | MsG0680031361.01.T01:CDS | 35.0% |
| ! | TGATAGAAGCTCAATTTTGC+AGG | + | Chr6:18909998-18910017 | MsG0680031361.01.T01:CDS | 35.0% |
| !! | GGACAATTGTCTGATTTGTT+CGG | - | Chr6:18911307-18911326 | None:intergenic | 35.0% |
| ACCTGAAGCAATATATTCCC+AGG | - | Chr6:18911112-18911131 | None:intergenic | 40.0% | |
| CAAAACATGGACAGAGGAAA+TGG | - | Chr6:18911932-18911951 | None:intergenic | 40.0% | |
| CATGAAATTACGAATGCCCT+GGG | + | Chr6:18911092-18911111 | MsG0680031361.01.T01:CDS | 40.0% | |
| CCTGAAGCAATATATTCCCA+GGG | - | Chr6:18911111-18911130 | None:intergenic | 40.0% | |
| CTTGCATCAAGGCTAAATGA+CGG | + | Chr6:18910513-18910532 | MsG0680031361.01.T01:CDS | 40.0% | |
| CTTGGTTACTGTGCATTTAC+AGG | + | Chr6:18910668-18910687 | MsG0680031361.01.T01:CDS | 40.0% | |
| CTTTCCTATTGTTCCATTGC+AGG | + | Chr6:18911498-18911517 | MsG0680031361.01.T01:intron | 40.0% | |
| TACAGGTACATATACCGTAC+CGG | + | Chr6:18910685-18910704 | MsG0680031361.01.T01:intron | 40.0% | |
| TCATGAAATTACGAATGCCC+TGG | + | Chr6:18911091-18911110 | MsG0680031361.01.T01:CDS | 40.0% | |
| TGACTACACTTCGATCACAT+AGG | + | Chr6:18910174-18910193 | MsG0680031361.01.T01:intron | 40.0% | |
| TGATGCAAGTGCATTAGCAA+TGG | - | Chr6:18910502-18910521 | None:intergenic | 40.0% | |
| TGCGGATAACATAGACGATA+CGG | - | Chr6:18911438-18911457 | None:intergenic | 40.0% | |
| TGTTCCATTGCAGGATAACT+AGG | + | Chr6:18911507-18911526 | MsG0680031361.01.T01:intron | 40.0% | |
| TTGCAAGTCAAGAGAACTAC+TGG | + | Chr6:18911980-18911999 | MsG0680031361.01.T01:three_prime_UTR | 40.0% | |
| TTGCATCAAGGCTAAATGAC+GGG | + | Chr6:18910514-18910533 | MsG0680031361.01.T01:CDS | 40.0% | |
| TTGCTAATGCACTTGCATCA+AGG | + | Chr6:18910502-18910521 | MsG0680031361.01.T01:CDS | 40.0% | |
| !! | GAGGAAATGGATTGTGTGTT+TGG | - | Chr6:18911919-18911938 | None:intergenic | 40.0% |
| !! | GGATTGTGTGTTTGGTTCTA+CGG | - | Chr6:18911911-18911930 | None:intergenic | 40.0% |
| AGTCAAGAGAACTACTGGCA+AGG | + | Chr6:18911985-18912004 | MsG0680031361.01.T01:three_prime_UTR | 45.0% | |
| AGTGCATTAGCAATGGCAAG+TGG | - | Chr6:18910495-18910514 | None:intergenic | 45.0% | |
| CAGAAACAGAATCATCAGGC+AGG | - | Chr6:18911028-18911047 | None:intergenic | 45.0% | |
| CCATTGCAGGATAACTAGGA+AGG | + | Chr6:18911511-18911530 | MsG0680031361.01.T01:intron | 45.0% | |
| CCCTGGGAATATATTGCTTC+AGG | + | Chr6:18911108-18911127 | MsG0680031361.01.T01:CDS | 45.0% | |
| CCTTCCTAGTTATCCTGCAA+TGG | - | Chr6:18911514-18911533 | None:intergenic | 45.0% | |
| GGCAAGTGGTAGATACATGA+GGG | - | Chr6:18910481-18910500 | None:intergenic | 45.0% | |
| TGGCAAGTGGTAGATACATG+AGG | - | Chr6:18910482-18910501 | None:intergenic | 45.0% | |
| ! | GAAGCTCAATTTTGCAGGGA+AGG | + | Chr6:18910003-18910022 | MsG0680031361.01.T01:CDS | 45.0% |
| ! | GAGAACTACTGGCAAGGTTT+TGG | + | Chr6:18911991-18912010 | MsG0680031361.01.T01:three_prime_UTR | 45.0% |
| ! | TAACAAAGCCTTTTCGCGCT+AGG | - | Chr6:18910252-18910271 | None:intergenic | 45.0% |
| CCAACCGGACACATAGCTTA+GGG | - | Chr6:18911235-18911254 | None:intergenic | 50.0% | |
| CTTGCCCTAAGCTATGTGTC+CGG | + | Chr6:18911228-18911247 | MsG0680031361.01.T01:intron | 50.0% | |
| GAGTGTCCAAGACGTGTCAA+AGG | - | Chr6:18911339-18911358 | None:intergenic | 50.0% | |
| GCTAGGTGGAGTCAGTTTCA+TGG | - | Chr6:18910235-18910254 | None:intergenic | 50.0% | |
| ACCGACGCAAGTTTGCCAAC+CGG | - | Chr6:18911250-18911269 | None:intergenic | 55.0% | |
| CCCTAAGCTATGTGTCCGGT+TGG | + | Chr6:18911232-18911251 | MsG0680031361.01.T01:intron | 55.0% | |
| GCCAACCGGACACATAGCTT+AGG | - | Chr6:18911236-18911255 | None:intergenic | 55.0% | |
| TCCGGTTGGCAAACTTGCGT+CGG | + | Chr6:18911246-18911265 | MsG0680031361.01.T01:intron | 55.0% | |
| TGACTCCACCTAGCGCGAAA+AGG | + | Chr6:18910241-18910260 | MsG0680031361.01.T01:intron | 55.0% | |
| ! | CAAAGCCTTTTCGCGCTAGG+TGG | - | Chr6:18910249-18910268 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 18909987 | 18912208 | 18909987 | ID=MsG0680031361.01;Name=MsG0680031361.01 |
| Chr6 | mRNA | 18909987 | 18912208 | 18909987 | ID=MsG0680031361.01.T01;Parent=MsG0680031361.01;Name=MsG0680031361.01.T01;_AED=0.47;_eAED=0.50;_QI=0|1|0.83|1|0.4|0.16|6|251|100 |
| Chr6 | exon | 18911520 | 18911562 | 18911520 | ID=MsG0680031361.01.T01:exon:12590;Parent=MsG0680031361.01.T01 |
| Chr6 | exon | 18911979 | 18912208 | 18911979 | ID=MsG0680031361.01.T01:exon:12591;Parent=MsG0680031361.01.T01 |
| Chr6 | CDS | 18909987 | 18910082 | 18909987 | ID=MsG0680031361.01.T01:cds;Parent=MsG0680031361.01.T01 |
| Chr6 | CDS | 18910477 | 18910535 | 18910477 | ID=MsG0680031361.01.T01:cds;Parent=MsG0680031361.01.T01 |
| Chr6 | CDS | 18910637 | 18910689 | 18910637 | ID=MsG0680031361.01.T01:cds;Parent=MsG0680031361.01.T01 |
| Chr6 | CDS | 18911057 | 18911129 | 18911057 | ID=MsG0680031361.01.T01:cds;Parent=MsG0680031361.01.T01 |
| Chr6 | CDS | 18911520 | 18911541 | 18911520 | ID=MsG0680031361.01.T01:cds;Parent=MsG0680031361.01.T01 |
| Chr6 | three_prime_UTR | 18911542 | 18911562 | 18911542 | ID=MsG0680031361.01.T01:three_prime_utr;Parent=MsG0680031361.01.T01 |
| Chr6 | three_prime_UTR | 18911979 | 18912208 | 18911979 | ID=MsG0680031361.01.T01:three_prime_utr;Parent=MsG0680031361.01.T01 |
| Chr6 | mRNA | 18909987 | 18911712 | 18909987 | ID=MsG0680031361.01.T02;Parent=MsG0680031361.01;Name=MsG0680031361.01.T02;_AED=0.48;_eAED=0.51;_QI=0|1|0.8|1|0.5|0.2|5|171|100 |
| Chr6 | exon | 18911520 | 18911712 | 18911520 | ID=MsG0680031361.01.T02:exon:12592;Parent=MsG0680031361.01.T02 |
| Chr6 | CDS | 18909987 | 18910082 | 18909987 | ID=MsG0680031361.01.T02:cds;Parent=MsG0680031361.01.T02 |
| Chr6 | CDS | 18910477 | 18910535 | 18910477 | ID=MsG0680031361.01.T02:cds;Parent=MsG0680031361.01.T02 |
| Chr6 | CDS | 18910637 | 18910689 | 18910637 | ID=MsG0680031361.01.T02:cds;Parent=MsG0680031361.01.T02 |
| Chr6 | CDS | 18911057 | 18911129 | 18911057 | ID=MsG0680031361.01.T02:cds;Parent=MsG0680031361.01.T02 |
| Chr6 | CDS | 18911520 | 18911541 | 18911520 | ID=MsG0680031361.01.T02:cds;Parent=MsG0680031361.01.T02 |
| Chr6 | three_prime_UTR | 18911542 | 18911712 | 18911542 | ID=MsG0680031361.01.T02:three_prime_utr;Parent=MsG0680031361.01.T02 |
| Gene Sequence |
| Protein sequence |
