AlfalfaGEDB | MsG0380014173.01

M. sativa cultivar ZhongmuNo.1 / MsG0380014173.01

KEGG: K13111
GO: GO:0005515
PFAM: PF00400

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014173.01.T01	XP_003600112.1	68.944	161	32	3	562	704	353	513	6.70E-56	210
MsG0380014173.01.T01	XP_003600112.1	98.75	80	1	0	294	373	211	290	1.35E-41	170
MsG0380014173.01.T01	XP_003600112.1	31.651	436	174	15	1	373	1	375	3.75E-26	125

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014173.01.T01	Q8W117	66.942	121	34	2	590	704	391	511	4.84E-45	172

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014173.01.T01	G7IY21	68.944	161	32	3	562	704	353	513	3.20e-56	210

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047869.01	MsG0380014173.01	0.848669	5.288773e-60	9.778944e-57
MsG0080047940.01	MsG0380014173.01	0.815412	9.369568e-52	6.455117e-49
MsG0080047944.01	MsG0380014173.01	0.831631	1.496171e-55	1.632959e-52
MsG0080047957.01	MsG0380014173.01	0.815538	8.784701e-52	6.073292e-49
MsG0080047959.01	MsG0380014173.01	0.818247	2.164995e-52	1.611985e-49
MsG0080047962.01	MsG0380014173.01	0.803377	3.588936e-49	1.800638e-46
MsG0080048113.01	MsG0380014173.01	0.822769	1.984256e-53	1.676621e-50
MsG0080048404.01	MsG0380014173.01	0.834517	2.863519e-56	3.406459e-53
MsG0080048462.01	MsG0380014173.01	0.846793	1.736967e-59	3.024385e-56
MsG0080048618.01	MsG0380014173.01	0.849049	4.150244e-60	7.769699e-57

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PPI

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Gene1	Gene2	Type
MsG0180003207.01	MsG0380014173.01	PPI
MsG0180003210.01	MsG0380014173.01	PPI
MsG0280006527.01	MsG0380014173.01	PPI
MsG0280006530.01	MsG0380014173.01	PPI
MsG0280006531.01	MsG0380014173.01	PPI
MsG0280006532.01	MsG0380014173.01	PPI
MsG0280006533.01	MsG0380014173.01	PPI
MsG0280009943.01	MsG0380014173.01	PPI
MsG0380014173.01	MsG0880044037.01	PPI
MsG0380014173.01	MsG0180000476.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014173.01.T01	MTR_3g052220	68.944	161	32	3	562	704	353	513	8.12e-60	210
MsG0380014173.01.T01	MTR_3g052220	98.750	80	1	0	294	373	211	290	1.64e-45	170
MsG0380014173.01.T01	MTR_3g052220	31.651	436	174	15	1	373	1	375	4.54e-30	125

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014173.01.T01	AT1G73720	66.942	121	34	2	590	704	391	511	4.94e-46	172
MsG0380014173.01.T01	AT1G73720	51.974	152	66	1	229	373	138	289	1.67e-39	153
MsG0380014173.01.T01	AT1G73720	38.362	232	69	8	4	182	3	213	6.21e-25	109

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Find 149 sgRNAs with CRISPR-Local

Find 712 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATTATAGGGATATTT+TGG	0.075907	3:+50877758	None:intergenic
AAAACTAACTCACTTCTGCC+TGG	0.560939	3:+50876880	None:intergenic
AAAGCCATTAATCGGGAAGG+TGG	0.634806	3:+50879738	None:intergenic
AAATTAGGCAAAACAAATTT+AGG	0.132722	3:+50873360	None:intergenic
AACAATGTGTTCAGTATTCT+TGG	0.269560	3:+50873278	None:intergenic
AACATTCATGATGCATGATG+AGG	0.666174	3:-50876384	MsG0380014173.01.T01:CDS
AACTATTTGAACGAAAACGA+TGG	0.614596	3:+50882290	None:intergenic
AACTCACTTCTGCCTGGTAC+TGG	0.439927	3:+50876886	None:intergenic
AAGATGTTGAAAGAGTTTCG+TGG	0.666526	3:-50873663	MsG0380014173.01.T01:CDS
AAGTTGCAACAAGATTCCTA+TGG	0.504360	3:+50871065	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAAATTAGGCCATCAC+TGG	-	Chr3:50875913-50875932	MsG0380014173.01.T01:intron	30.0%
AAAAACAGAGAATCGAGATT+TGG	+	Chr3:50877552-50877571	None:intergenic	30.0%
AAACAATAAGGTAAGGAGAA+GGG	+	Chr3:50874621-50874640	None:intergenic	30.0%
AAATAAACTGAAAACACCCT+AGG	+	Chr3:50871545-50871564	None:intergenic	30.0%
AACAATGTGTTCAGTATTCT+TGG	+	Chr3:50879849-50879868	None:intergenic	30.0%
AACCAATGAGATGAAAATTC+AGG	-	Chr3:50878321-50878340	MsG0380014173.01.T01:intron	30.0%
AACTATTTGAACGAAAACGA+TGG	+	Chr3:50870837-50870856	None:intergenic	30.0%
AAGAATCAGATGCATATCAA+CGG	+	Chr3:50875663-50875682	None:intergenic	30.0%
AAGAATCCATAACAAATGGA+TGG	+	Chr3:50872193-50872212	None:intergenic	30.0%
AAGTAAGATTCTACATCACA+AGG	+	Chr3:50874514-50874533	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	50870815	50882331	50870815	ID=MsG0380014173.01;Name=MsG0380014173.01
Chr3	mRNA	50870815	50882331	50870815	ID=MsG0380014173.01.T01;Parent=MsG0380014173.01;Name=MsG0380014173.01.T01;_AED=0.46;_eAED=0.72;_QI=87\|0.29\|0.38\|1\|0.47\|0.33\|18\|212\|704
Chr3	exon	50870815	50871125	50870815	ID=MsG0380014173.01.T01:exon:9848;Parent=MsG0380014173.01.T01
Chr3	exon	50871708	50871759	50871708	ID=MsG0380014173.01.T01:exon:9847;Parent=MsG0380014173.01.T01
Chr3	exon	50872349	50872433	50872349	ID=MsG0380014173.01.T01:exon:9846;Parent=MsG0380014173.01.T01
Chr3	exon	50873232	50873400	50873232	ID=MsG0380014173.01.T01:exon:9845;Parent=MsG0380014173.01.T01
Chr3	exon	50873621	50873898	50873621	ID=MsG0380014173.01.T01:exon:9844;Parent=MsG0380014173.01.T01
Chr3	exon	50875323	50875544	50875323	ID=MsG0380014173.01.T01:exon:9843;Parent=MsG0380014173.01.T01
Chr3	exon	50876219	50876408	50876219	ID=MsG0380014173.01.T01:exon:9842;Parent=MsG0380014173.01.T01
Chr3	exon	50876893	50876946	50876893	ID=MsG0380014173.01.T01:exon:9841;Parent=MsG0380014173.01.T01
Chr3	exon	50877060	50877146	50877060	ID=MsG0380014173.01.T01:exon:9840;Parent=MsG0380014173.01.T01
Chr3	exon	50877401	50877433	50877401	ID=MsG0380014173.01.T01:exon:9839;Parent=MsG0380014173.01.T01
Chr3	exon	50877550	50877861	50877550	ID=MsG0380014173.01.T01:exon:9838;Parent=MsG0380014173.01.T01
Chr3	exon	50878827	50878931	50878827	ID=MsG0380014173.01.T01:exon:9837;Parent=MsG0380014173.01.T01
Chr3	exon	50879021	50879054	50879021	ID=MsG0380014173.01.T01:exon:9836;Parent=MsG0380014173.01.T01
Chr3	exon	50879705	50879786	50879705	ID=MsG0380014173.01.T01:exon:9835;Parent=MsG0380014173.01.T01
Chr3	exon	50880114	50880202	50880114	ID=MsG0380014173.01.T01:exon:9834;Parent=MsG0380014173.01.T01
Chr3	exon	50880415	50880539	50880415	ID=MsG0380014173.01.T01:exon:9833;Parent=MsG0380014173.01.T01
Chr3	exon	50882033	50882102	50882033	ID=MsG0380014173.01.T01:exon:9832;Parent=MsG0380014173.01.T01
Chr3	exon	50882216	50882331	50882216	ID=MsG0380014173.01.T01:exon:9831;Parent=MsG0380014173.01.T01
Chr3	five_prime_UTR	50882245	50882331	50882245	ID=MsG0380014173.01.T01:five_prime_utr;Parent=MsG0380014173.01.T01
Chr3	CDS	50882216	50882244	50882216	ID=MsG0380014173.01.T01:cds;Parent=MsG0380014173.01.T01
Chr3	CDS	50882033	50882102	50882033	ID=MsG0380014173.01.T01:cds;Parent=MsG0380014173.01.T01
Chr3	CDS	50880415	50880539	50880415	ID=MsG0380014173.01.T01:cds;Parent=MsG0380014173.01.T01
Chr3	CDS	50880114	50880202	50880114	ID=MsG0380014173.01.T01:cds;Parent=MsG0380014173.01.T01
Chr3	CDS	50879705	50879786	50879705	ID=MsG0380014173.01.T01:cds;Parent=MsG0380014173.01.T01
Chr3	CDS	50879021	50879054	50879021	ID=MsG0380014173.01.T01:cds;Parent=MsG0380014173.01.T01
Chr3	CDS	50878827	50878931	50878827	ID=MsG0380014173.01.T01:cds;Parent=MsG0380014173.01.T01
Chr3	CDS	50877550	50877861	50877550	ID=MsG0380014173.01.T01:cds;Parent=MsG0380014173.01.T01
Chr3	CDS	50877401	50877433	50877401	ID=MsG0380014173.01.T01:cds;Parent=MsG0380014173.01.T01
Chr3	CDS	50877060	50877146	50877060	ID=MsG0380014173.01.T01:cds;Parent=MsG0380014173.01.T01
Chr3	CDS	50876893	50876946	50876893	ID=MsG0380014173.01.T01:cds;Parent=MsG0380014173.01.T01
Chr3	CDS	50876219	50876408	50876219	ID=MsG0380014173.01.T01:cds;Parent=MsG0380014173.01.T01
Chr3	CDS	50875323	50875544	50875323	ID=MsG0380014173.01.T01:cds;Parent=MsG0380014173.01.T01
Chr3	CDS	50873621	50873898	50873621	ID=MsG0380014173.01.T01:cds;Parent=MsG0380014173.01.T01
Chr3	CDS	50873232	50873400	50873232	ID=MsG0380014173.01.T01:cds;Parent=MsG0380014173.01.T01
Chr3	CDS	50872349	50872433	50872349	ID=MsG0380014173.01.T01:cds;Parent=MsG0380014173.01.T01
Chr3	CDS	50871708	50871759	50871708	ID=MsG0380014173.01.T01:cds;Parent=MsG0380014173.01.T01
Chr3	CDS	50871027	50871125	50871027	ID=MsG0380014173.01.T01:cds;Parent=MsG0380014173.01.T01
Chr3	three_prime_UTR	50870815	50871026	50870815	ID=MsG0380014173.01.T01:three_prime_utr;Parent=MsG0380014173.01.T01

Gene Sequence

>MsG0380014173.01.T01

ATGTCTACGCTAGAAATCGAAGCTCGAGATGTGATTAAAACCGTGCTTCAATTCTGCAAAGAGACTCGTTGCATCAACTTTCAACACGACAGAATGAATGCCATTGTATGTAACTATGCCCAAATTGTGATTATCTATGAATATGATGGGTCTGGTTGCAGATTTTTAGAAATGATTGAACTTAGAGAACTGGATACAGCACGTGCTATATTAAGCAAACACAGTGTAATTCCTCATATAAAATATTATTTTGCGATAGGCCTATCAAGAATCAACAAAAGAGAAGCGACGTGCGCAAATAGCCCAGGTTTTTCTATTGCAGCAGAAGTGACTGTGGTGCCACCTTCCCGATTAATGGCTTTAATTGTCAGGCTTGAAGTGGCAGCAGCATCAAGTAATGTTTATTCTTTAAATAAATGGCGTATCTCCGTTTACTTCCTCCTGGAAACACAGTTTGATTTGTTTCGTGGAACAGCTGCTATGAAACAAGATGTGGATGACATGTATCCAACCAATCTTTCTCATACTATAAAGAAAGGAACTCGCAGAAGAGGGAACAGAAATTTTATCAGCGAGCGCAAAGAGAGAATAAGACTGGGTTCGAGTGAATACCCCCCAAAATATCCCTATAATGTTTTAAATCATAAGGATAAATGTGGTTTCCCTCTTGCCTTTATTGTCGTGGAAGAGAACACACCACAGATCTCTTCTGCTGCGGCTGCACCCTTATTCCGCATTGCCCCTGCCTTCACCGTTGCGGCCAGATGCCGCTCCACTCTGATCCAGCGCAATCGCGGTGCTACCTGTCACTGTTACTTCCTAGACTGGGACAAGGATGACTCGATTATTGCATTTGCATTGATATGTGACAGTGATCTGTTTGGGGCAAAAAGTCATGCGGAATGTGCTCGCTTTTCACCAGATGGGCAATATCTCGTTTCGTGTTCGATTGATGGGTTTATTGAGGTCTGGGATTACATAAGTGGAAAACTCAAGAAAGATCTCCAGTACCAGGCAGAAGAAACATTCATGATGCATGATGAGGCTGTGCTTTGTGTAGACTTTAGCAGAGATTCAGAGATGATTGCGTCTGGGTCAACAGATGGAAAGATTAAAGTGAGTATTCTACATCTTTTGATCTTTTCAAAGCTTGCACATATGATTGTTCAACGTTACTGTGAAATTGAACTTAGCTATAGAAAATCACTTGATTCCCAGATTTCACGTAGCTATGCATTTTTTTCCCTTCTGATTAATGACAATGAGCTTAGTAGTCATTTGCAGCCAGTTGCGCCGAGAGACTGTTATGGCGATGGCAAGAGTGTCGTGGCCACCACACATGTGTTCGTGGAGAAAACCACAGCACACATCATGGCCATCGTGTCCACAACAATGAAGGTGTATGAGAAACCCATTTGGCCAATTGAAAACGGCCTTAGAGTAACTCTTAGCTTAGTTACTCTTAAAAACTCTAGAGGGGTTGCTAGTGAAATTACGGATTTCTGTGCAATTCTTTATATTTGTTTTAATTGTAACACTTTAGAGCGGCTTGAAATTTATGTTTTAACCTTACAAATCAAATGTTTAGCAACTGCTGAGTGCAATGGTTCTTTATGTAATATAGAATCCATGCCTCAAATCTGGAAAGATGTTGAAAGAGTTTCGTGGCCATACATCTTATGTGACGATGCAACTTTCACCAACGATGGATTTTGTGCTATCATTTCCCCTAAATTTGTTTTGCCTAATTTCTGGTTCCTTTTTTGGCTGCTAGGGAGAGATGCTTCTGTTAATTCTGTTTTCATTTTCCCCAAGAATACTGAACACATTGTTGTTTGTAACAAAACCTCATCAATATACATCATGACACTCAAGACAGGTTGTGAAGAGTTTCTCATCCGTAAAAGAGAGGGTGGAGACTTCGTTGCAGCCTGCATTTCACCTAAAGGGGAATGGATTACTGTGAATATGTACTGCTTCAGCTATCAATCTGGCAAATTGGAGCATTTGATGACGGTTCATGATAAGGAAATTATCGGTGTCACTCATCATCCCCATAGGAATCTTGTTGCAACTTTTAGTGGCGACAACACAATGAAGTTGTGGAAGCCTTGA

Protein sequence

>MsG0380014173.01.T01

MSTLEIEARDVIKTVLQFCKETRCINFQHDRMNAIVCNYAQIVIIYEYDGSGCRFLEMIELRELDTARAILSKHSVIPHIKYYFAIGLSRINKREATCANSPGFSIAAEVTVVPPSRLMALIVRLEVAAASSNVYSLNKWRISVYFLLETQFDLFRGTAAMKQDVDDMYPTNLSHTIKKGTRRRGNRNFISERKERIRLGSSEYPPKYPYNVLNHKDKCGFPLAFIVVEENTPQISSAAAAPLFRIAPAFTVAARCRSTLIQRNRGATCHCYFLDWDKDDSIIAFALICDSDLFGAKSHAECARFSPDGQYLVSCSIDGFIEVWDYISGKLKKDLQYQAEETFMMHDEAVLCVDFSRDSEMIASGSTDGKIKVSILHLLIFSKLAHMIVQRYCEIELSYRKSLDSQISRSYAFFSLLINDNELSSHLQPVAPRDCYGDGKSVVATTHVFVEKTTAHIMAIVSTTMKVYEKPIWPIENGLRVTLSLVTLKNSRGVASEITDFCAILYICFNCNTLERLEIYVLTLQIKCLATAECNGSLCNIESMPQIWKDVERVSWPYILCDDATFTNDGFCAIISPKFVLPNFWFLFWLLGRDASVNSVFIFPKNTEHIVVCNKTSSIYIMTLKTGCEEFLIRKREGGDFVAACISPKGEWITVNMYCFSYQSGKLEHLMTVHDKEIIGVTHHPHRNLVATFSGDNTMKLWKP*