AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005799.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005799.01.T01 MTR_1g107235 86.920 237 24 2 30 261 184 418 4.01e-147 418
MsG0180005799.01.T01 MTR_1g107235 91.954 87 7 0 30 116 184 270 2.86e-51 170
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005799.01.T01 AT1G49820 66.102 236 73 2 30 260 185 418 5.57e-109 321

Find 64 sgRNAs with CRISPR-Local

Find 406 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCAAAGTGCAGTGAATTTA+TGG 0.184173 1:+96252607 None:intergenic
AAAGAGACACCTTATCATTT+TGG 0.222077 1:+96252458 None:intergenic
CTGTGTTATGCAGGCATATA+AGG 0.263644 1:-96252673 MsG0180005799.01.T01:CDS
TTATACTCAGAAACTTTATA+TGG 0.271029 1:+96254077 None:intergenic
ATTACTTAAGTTTCCATTAG+AGG 0.293158 1:-96249179 MsG0180005799.01.T01:three_prime_UTR
CCATAAATTCACTGCACTTT+GGG 0.304944 1:-96252607 MsG0180005799.01.T01:CDS
CAGATAAATGATGGATGTTA+AGG 0.332600 1:+96249397 None:intergenic
CATCATTAAATGTGTTGTTC+TGG 0.333827 1:-96249213 MsG0180005799.01.T01:three_prime_UTR
GGTCCATAAAATGCAAATTC+AGG 0.347893 1:+96253779 None:intergenic
TTTCATGACAGTCTCGGATT+TGG 0.351720 1:-96252486 MsG0180005799.01.T01:CDS
CCGTGATGCTGAGGCTGTTC+GGG 0.363989 1:-96254030 MsG0180005799.01.T01:CDS
GTATAGTGAATAAACTTTCT+CGG 0.376163 1:-96249301 MsG0180005799.01.T01:three_prime_UTR
TCAGGATTGTTATAGATTCC+TGG 0.385724 1:+96252549 None:intergenic
ACCGTGATGCTGAGGCTGTT+CGG 0.390427 1:-96254031 MsG0180005799.01.T01:CDS
CTATAGCTGACGCTGGTAAA+CGG 0.393225 1:-96249553 MsG0180005799.01.T01:CDS
TTCACTATACATAATTTGAC+AGG 0.394454 1:+96249314 None:intergenic
GCTGGTGAGGCATATCTTCC+AGG 0.401989 1:-96252567 MsG0180005799.01.T01:CDS
CTGATACGCAGGAGAATTGT+TGG 0.409447 1:-96249602 MsG0180005799.01.T01:intron
ACCATAAATTCACTGCACTT+TGG 0.416058 1:-96252608 MsG0180005799.01.T01:CDS
TATAGCTGACGCTGGTAAAC+GGG 0.426953 1:-96249552 MsG0180005799.01.T01:CDS
TTCATTTAGGTTCTGTGAGA+GGG 0.429000 1:-96253876 MsG0180005799.01.T01:intron
TTGAAGTTACAATATTAAAT+CGG 0.442126 1:+96249101 None:intergenic
ATTATCAAATATGATGGATC+TGG 0.450901 1:-96249135 MsG0180005799.01.T01:three_prime_UTR
TGTACAAGTAGTTGAACATC+AGG 0.451446 1:+96252531 None:intergenic
TTTAACAAGCTGTGTTATGC+AGG 0.455708 1:-96252682 MsG0180005799.01.T01:CDS
CAGAACAACACATTTAATGA+TGG 0.467605 1:+96249214 None:intergenic
TTAAGACAATTGCAGACACT+TGG 0.472640 1:-96252641 MsG0180005799.01.T01:CDS
GCGGGAATGTGGAGTTATGC+AGG 0.477746 1:-96254125 MsG0180005799.01.T01:CDS
TACTCAATTATCAAATATGA+TGG 0.481575 1:-96249141 MsG0180005799.01.T01:three_prime_UTR
TATACTCAGAAACTTTATAT+GGG 0.482549 1:+96254078 None:intergenic
TATTGTAACTTCAACGCTCT+CGG 0.492498 1:-96249092 MsG0180005799.01.T01:three_prime_UTR
ACGGGCAACCTGTGAACGGC+GGG 0.494513 1:-96249534 MsG0180005799.01.T01:CDS
TAGGTTCTGTGAGAGGGCTC+AGG 0.499778 1:-96253870 MsG0180005799.01.T01:CDS
ATCAAGTGCCCGCCGTTCAC+AGG 0.500202 1:+96249526 None:intergenic
GTTCATTTAGGTTCTGTGAG+AGG 0.506829 1:-96253877 MsG0180005799.01.T01:intron
GTTATGCAGGCTCACTGAGC+AGG 0.511628 1:-96254112 MsG0180005799.01.T01:CDS
CTCCATGGGAAGCTGGGAGA+TGG 0.513986 1:-96249273 MsG0180005799.01.T01:three_prime_UTR
AGAACAACACATTTAATGAT+GGG 0.530669 1:+96249215 None:intergenic
TTGGCGCTGCCAAAATGATA+AGG 0.541695 1:-96252467 MsG0180005799.01.T01:intron
GATTTATTTCATGACAGTCT+CGG 0.544205 1:-96252492 MsG0180005799.01.T01:CDS
CAGCATCACGGTCAAGATGA+GGG 0.555661 1:+96254042 None:intergenic
GAGCATTTCTGAAATTGTCT+CGG 0.557709 1:-96249465 MsG0180005799.01.T01:CDS
TACCATCTCCCAGCTTCCCA+TGG 0.559221 1:+96249271 None:intergenic
TTATGCAGGCATATAAGGAA+TGG 0.565476 1:-96252668 MsG0180005799.01.T01:CDS
TGTTGGTGTGGCACATGTTG+AGG 0.565977 1:-96249585 MsG0180005799.01.T01:CDS
AAGTTTCTGAGTATAATCGC+TGG 0.568636 1:-96254070 MsG0180005799.01.T01:CDS
TATAGAATTGCAAAGTTCAG+AGG 0.570611 1:+96252711 None:intergenic
AAGACATGTTATGTTACCAT+CGG 0.584646 1:-96254186 None:intergenic
TCAGCATCACGGTCAAGATG+AGG 0.591643 1:+96254041 None:intergenic
TCATCTTGACCGTGATGCTG+AGG 0.597607 1:-96254039 MsG0180005799.01.T01:CDS
CAAGGATAACTTAAGACCGA+TGG 0.611188 1:+96254170 None:intergenic
GTAAACGGGCAACCTGTGAA+CGG 0.615166 1:-96249538 MsG0180005799.01.T01:CDS
AACGGGCAACCTGTGAACGG+CGG 0.625939 1:-96249535 MsG0180005799.01.T01:CDS
TTCAGCAACTGCATTAAACA+AGG 0.627433 1:+96254152 None:intergenic
CCCGAACAGCCTCAGCATCA+CGG 0.629555 1:+96254030 None:intergenic
GAACAACACATTTAATGATG+GGG 0.629567 1:+96249216 None:intergenic
AGCATCACGGTCAAGATGAG+GGG 0.631550 1:+96254043 None:intergenic
TCTACACACTGGTTCTGTGA+TGG 0.638431 1:-96253831 MsG0180005799.01.T01:CDS
CTTGAATCTATAGCTGACGC+TGG 0.642125 1:-96249560 MsG0180005799.01.T01:CDS
AGGGCTCAGGCACTAATACA+CGG 0.649727 1:-96253857 MsG0180005799.01.T01:CDS
TCACTATACATAATTTGACA+GGG 0.659411 1:+96249315 None:intergenic
AAAGTGCAGTGAATTTATGG+TGG 0.659695 1:+96252610 None:intergenic
ACGCAGGAGAATTGTTGGTG+TGG 0.725000 1:-96249597 MsG0180005799.01.T01:intron
ATACACGGAGATCTACACAC+TGG 0.737182 1:-96253842 MsG0180005799.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATAAAAAAAAACAG+CGG - Chr1:96253028-96253047 MsG0180005799.01.T01:intron 10.0%
!!! AAAAAAAGTTTTTTTACATA+GGG + Chr1:96252338-96252357 None:intergenic 10.0%
!! ATGAAAATTTATGTTCATTT+AGG - Chr1:96249362-96249381 MsG0180005799.01.T01:three_prime_UTR 15.0%
!! CTAATAAAAACAATAATATG+AGG - Chr1:96252578-96252597 MsG0180005799.01.T01:CDS 15.0%
!! TAATATTATCTGAAAAAGAT+GGG + Chr1:96250316-96250335 None:intergenic 15.0%
!! TTGAAGTTACAATATTAAAT+CGG + Chr1:96254153-96254172 None:intergenic 15.0%
!!! CAAAAAAAGTTTTTTTACAT+AGG + Chr1:96252339-96252358 None:intergenic 15.0%
!!! CAAAAACATATTTTTACATA+GGG - Chr1:96251070-96251089 MsG0180005799.01.T01:intron 15.0%
!!! CTATGTAAAAAAACTTTTTT+TGG - Chr1:96252337-96252356 MsG0180005799.01.T01:intron 15.0%
!!! CTCATATTATTGTTTTTATT+AGG + Chr1:96252580-96252599 None:intergenic 15.0%
!!! GTTGTTTTAATATATATTCA+CGG - Chr1:96252882-96252901 MsG0180005799.01.T01:intron 15.0%
!!! TGAAGTTTTTATTTTTACTT+TGG - Chr1:96249726-96249745 MsG0180005799.01.T01:intron 15.0%
!!! TTTTTCCTCTTTTAATAAAA+AGG - Chr1:96250828-96250847 MsG0180005799.01.T01:intron 15.0%
!! AAAACTGTAAATATGAACAA+AGG + Chr1:96249865-96249884 None:intergenic 20.0%
!! AAAAGGCTTAAATATGTAAA+AGG - Chr1:96250845-96250864 MsG0180005799.01.T01:intron 20.0%
!! ATTAGGCTTAAATAAGTAAA+AGG + Chr1:96252563-96252582 None:intergenic 20.0%
!! CTAATATTATCTGAAAAAGA+TGG + Chr1:96250317-96250336 None:intergenic 20.0%
!! GGTATTAAAAAAAAATTGGA+GGG + Chr1:96253229-96253248 None:intergenic 20.0%
!! GTAATAAAAATAACCTCTAA+TGG + Chr1:96254088-96254107 None:intergenic 20.0%
!! TACTCAATTATCAAATATGA+TGG - Chr1:96254110-96254129 MsG0180005799.01.T01:CDS 20.0%
!! TATACTCAGAAACTTTATAT+GGG + Chr1:96249176-96249195 None:intergenic 20.0%
!! TTATACTCAGAAACTTTATA+TGG + Chr1:96249177-96249196 None:intergenic 20.0%
!!! AGTTTTTATTTTTACTTTGG+CGG - Chr1:96249729-96249748 MsG0180005799.01.T01:intron 20.0%
!!! ATCTTTTATGGACAAAAATT+AGG + Chr1:96253594-96253613 None:intergenic 20.0%
!!! ATTTGTTGTGATTTGATTTT+GGG - Chr1:96252136-96252155 MsG0180005799.01.T01:intron 20.0%
!!! CCAAAAACATATTTTTACAT+AGG - Chr1:96251069-96251088 MsG0180005799.01.T01:intron 20.0%
!!! CCTATGTAAAAATATGTTTT+TGG + Chr1:96251072-96251091 None:intergenic 20.0%
!!! GCTTAAACTTTTAAGATAAT+TGG - Chr1:96252920-96252939 MsG0180005799.01.T01:intron 20.0%
!!! TTAAGCCTTTTTATTAAAAG+AGG + Chr1:96250836-96250855 None:intergenic 20.0%
!!! TTTTGAAAACAGATAAATGA+TGG + Chr1:96253866-96253885 None:intergenic 20.0%
! AACGATATGAGGAAAATAAT+AGG + Chr1:96251497-96251516 None:intergenic 25.0%
! AAGAATAGGAAATTTCAGAA+AGG - Chr1:96250036-96250055 MsG0180005799.01.T01:intron 25.0%
! ACAATCATTAGAGAGATAAA+TGG - Chr1:96252666-96252685 MsG0180005799.01.T01:CDS 25.0%
! AGAACAACACATTTAATGAT+GGG + Chr1:96254039-96254058 None:intergenic 25.0%
! AGTCACATCTTAGTTTATTT+GGG - Chr1:96252718-96252737 MsG0180005799.01.T01:CDS 25.0%
! AGTTTATTTGGGAATTAGAA+GGG - Chr1:96252729-96252748 MsG0180005799.01.T01:CDS 25.0%
! ATGATATCCTAAAGATATGT+AGG + Chr1:96249792-96249811 None:intergenic 25.0%
! ATGTCCATGTTTATGATTTA+TGG - Chr1:96252634-96252653 MsG0180005799.01.T01:CDS 25.0%
! ATTACTTAAGTTTCCATTAG+AGG - Chr1:96254072-96254091 MsG0180005799.01.T01:CDS 25.0%
! CAGAATAGAATGAAAAGAAT+GGG + Chr1:96249618-96249637 None:intergenic 25.0%
! GGGTATTAAAAAAAAATTGG+AGG + Chr1:96253230-96253249 None:intergenic 25.0%
! GTATAGTGAATAAACTTTCT+CGG - Chr1:96253950-96253969 MsG0180005799.01.T01:intron 25.0%
! GTGGGTATTAAAAAAAATTG+AGG + Chr1:96253195-96253214 None:intergenic 25.0%
! TAACCCATAAATCATAAACA+TGG + Chr1:96252641-96252660 None:intergenic 25.0%
! TAGTTTATTTGGGAATTAGA+AGG - Chr1:96252728-96252747 MsG0180005799.01.T01:CDS 25.0%
! TATTAAACATTGTTCTCAAG+AGG - Chr1:96251631-96251650 MsG0180005799.01.T01:intron 25.0%
! TATTCAATAAACCTCAAGTT+TGG + Chr1:96252063-96252082 None:intergenic 25.0%
! TCACTATACATAATTTGACA+GGG + Chr1:96253939-96253958 None:intergenic 25.0%
! TCAGAATAGAATGAAAAGAA+TGG + Chr1:96249619-96249638 None:intergenic 25.0%
! TGATATCCTAAAGATATGTA+GGG + Chr1:96249791-96249810 None:intergenic 25.0%
! TGTCCATGTTTATGATTTAT+GGG - Chr1:96252635-96252654 MsG0180005799.01.T01:CDS 25.0%
! TTATATCACAACAATAAGTG+TGG + Chr1:96251242-96251261 None:intergenic 25.0%
! TTCACTATACATAATTTGAC+AGG + Chr1:96253940-96253959 None:intergenic 25.0%
! TTTCATTCATGTTCAATTCA+TGG + Chr1:96251397-96251416 None:intergenic 25.0%
! TTTGATTCCTATTATTCTGT+TGG - Chr1:96251762-96251781 MsG0180005799.01.T01:intron 25.0%
!! AAAACGTTTGGTAATTACAA+GGG - Chr1:96252477-96252496 MsG0180005799.01.T01:CDS 25.0%
!! AAAACGTTTGGTAATTACAA+GGG + Chr1:96252496-96252477 None:intergenic 25.0%
!! AATTTCCTATTCTTTGTTTG+TGG + Chr1:96250030-96250049 None:intergenic 25.0%
!! GTTACTAGACATATATTTTC+TGG - Chr1:96249643-96249662 MsG0180005799.01.T01:intron 25.0%
!! TATGCATTAGATTTTTCACA+TGG + Chr1:96250005-96250024 None:intergenic 25.0%
!! TCTCTAAAAATATCATATGC+TGG + Chr1:96250417-96250436 None:intergenic 25.0%
!! TTTTTGTCCATAAAAGATTG+AGG - Chr1:96253596-96253615 MsG0180005799.01.T01:intron 25.0%
!!! AATGCAGTAGTTTTGTTTTT+TGG - Chr1:96249329-96249348 MsG0180005799.01.T01:three_prime_UTR 25.0%
!!! AGAGATAAATGGATTAGTTT+CGG - Chr1:96252677-96252696 MsG0180005799.01.T01:CDS 25.0%
!!! ATACGTTTTGATTTTATCAC+TGG - Chr1:96253439-96253458 MsG0180005799.01.T01:intron 25.0%
!!! ATGCAGTAGTTTTGTTTTTT+GGG - Chr1:96249330-96249349 MsG0180005799.01.T01:three_prime_UTR 25.0%
!!! ATTATCAAATATGATGGATC+TGG - Chr1:96254116-96254135 MsG0180005799.01.T01:CDS 25.0%
!!! ATTTTTTTCATGGAACTTGA+CGG - Chr1:96252440-96252459 MsG0180005799.01.T01:intron 25.0%
!!! CATTCTAGGAAATTTGATTT+TGG - Chr1:96249515-96249534 MsG0180005799.01.T01:CDS 25.0%
!!! GATTTGTTGTGATTTGATTT+TGG - Chr1:96252135-96252154 MsG0180005799.01.T01:intron 25.0%
!!! TATGTTTTAACTTAAGAGAG+AGG + Chr1:96251176-96251195 None:intergenic 25.0%
!!! TGGGGGTATTAAAAAAAAAT+TGG + Chr1:96253233-96253252 None:intergenic 25.0%
!!! TTTCAGTTTTTTCTTTGTTG+AGG - Chr1:96250508-96250527 MsG0180005799.01.T01:intron 25.0%
!!! TTTGTTGTGATTTGATTTTG+GGG - Chr1:96252137-96252156 MsG0180005799.01.T01:intron 25.0%
!!! TTTTTAGAGAATCAACATTC+TGG - Chr1:96250427-96250446 MsG0180005799.01.T01:intron 25.0%
AAACATAAACCATACCAAGT+TGG - Chr1:96251189-96251208 MsG0180005799.01.T01:intron 30.0%
AAGAAAGAAAGATCAAAGAG+AGG - Chr1:96252248-96252267 MsG0180005799.01.T01:intron 30.0%
AAGACAAATGATAAGGTTTG+TGG - Chr1:96252030-96252049 MsG0180005799.01.T01:intron 30.0%
AATTATAGTGAGAGATTACG+AGG - Chr1:96252767-96252786 MsG0180005799.01.T01:intron 30.0%
ACATCATCCAACAGAATAAT+AGG + Chr1:96251772-96251791 None:intergenic 30.0%
ACTAGTAACAATTGAAGACT+TGG - Chr1:96250352-96250371 MsG0180005799.01.T01:intron 30.0%
ATAAGCCACAAACAAAGAAT+AGG - Chr1:96250022-96250041 MsG0180005799.01.T01:intron 30.0%
ATTTCAATTATCTGATACGC+AGG - Chr1:96253638-96253657 MsG0180005799.01.T01:intron 30.0%
CAATAAAGACATGGAAAAAG+AGG + Chr1:96249594-96249613 None:intergenic 30.0%
CAGAACAACACATTTAATGA+TGG + Chr1:96254040-96254059 None:intergenic 30.0%
CTTCAATTGTTACTAGTGTT+GGG + Chr1:96250349-96250368 None:intergenic 30.0%
CTTTCCATTTCGTTATTGTA+GGG + Chr1:96251676-96251695 None:intergenic 30.0%
GAACAACACATTTAATGATG+GGG + Chr1:96254038-96254057 None:intergenic 30.0%
GAGTCACATCTTAGTTTATT+TGG - Chr1:96252717-96252736 MsG0180005799.01.T01:CDS 30.0%
GATTTATTTCATGACAGTCT+CGG - Chr1:96250759-96250778 MsG0180005799.01.T01:intron 30.0%
GTTTATTTGGGAATTAGAAG+GGG - Chr1:96252730-96252749 MsG0180005799.01.T01:CDS 30.0%
TAAAACAAGAGGACAGAAAA+TGG + Chr1:96253257-96253276 None:intergenic 30.0%
TACTGCTATTACAATCTTCA+TGG - Chr1:96251726-96251745 MsG0180005799.01.T01:intron 30.0%
TAGATCTCTATCTCTAGTTA+TGG - Chr1:96249694-96249713 MsG0180005799.01.T01:intron 30.0%
TATACCCTACAATAACGAAA+TGG - Chr1:96251669-96251688 MsG0180005799.01.T01:intron 30.0%
TATAGAATTGCAAAGTTCAG+AGG + Chr1:96250543-96250562 None:intergenic 30.0%
TCCTAAAAACTAGTCAATGT+AGG + Chr1:96250478-96250497 None:intergenic 30.0%
TCGCAAGAAAAAAACTTACA+GGG - Chr1:96252505-96252524 MsG0180005799.01.T01:CDS 30.0%
TCGCAAGAAAAAAACTTACA+GGG + Chr1:96252524-96252505 None:intergenic 30.0%
TCTTCAATTGTTACTAGTGT+TGG + Chr1:96250350-96250369 None:intergenic 30.0%
TCTTTCCATTTCGTTATTGT+AGG + Chr1:96251677-96251696 None:intergenic 30.0%
TGCGTATCAGATAATTGAAA+TGG + Chr1:96253639-96253658 None:intergenic 30.0%
TTAAAAAAAATTGAGGCCCA+TGG + Chr1:96253188-96253207 None:intergenic 30.0%
TTATCATTTGTCTTAGACAC+AGG + Chr1:96252024-96252043 None:intergenic 30.0%
TTCGCAAGAAAAAAACTTAC+AGG - Chr1:96252504-96252523 MsG0180005799.01.T01:CDS 30.0%
TTCGCAAGAAAAAAACTTAC+AGG + Chr1:96252523-96252504 None:intergenic 30.0%
TTCTCTGAATTAGGATAACA+AGG + Chr1:96249941-96249960 None:intergenic 30.0%
TTGTTATCCTAATTCAGAGA+AGG - Chr1:96249940-96249959 MsG0180005799.01.T01:intron 30.0%
TTTGGAGAAAATTTGTGTGT+TGG - Chr1:96252095-96252114 MsG0180005799.01.T01:intron 30.0%
! AAAGAGACACCTTATCATTT+TGG + Chr1:96250796-96250815 None:intergenic 30.0%
! ACTAGACATATATTTTCTGG+TGG - Chr1:96249646-96249665 MsG0180005799.01.T01:intron 30.0%
! ATACATTTTTCCACAAGGTA+GGG + Chr1:96252858-96252877 None:intergenic 30.0%
! ATTTGCATTTTATGGACCAA+TGG - Chr1:96249477-96249496 MsG0180005799.01.T01:CDS 30.0%
! CAAAACGTTTGGTAATTACA+AGG - Chr1:96252476-96252495 MsG0180005799.01.T01:CDS 30.0%
! CAAAACGTTTGGTAATTACA+AGG + Chr1:96252495-96252476 None:intergenic 30.0%
! CAAATTTTCTCCAAAAGCTA+TGG + Chr1:96252090-96252109 None:intergenic 30.0%
! CATCATTAAATGTGTTGTTC+TGG - Chr1:96254038-96254057 MsG0180005799.01.T01:CDS 30.0%
! CATGATATCGTCTTTGTTTA+TGG + Chr1:96250128-96250147 None:intergenic 30.0%
! CTCTTTTTCCATGTCTTTAT+TGG - Chr1:96249592-96249611 MsG0180005799.01.T01:CDS 30.0%
! CTTGTAATTACCAAACGTTT+TGG - Chr1:96250930-96250949 MsG0180005799.01.T01:intron 30.0%
! CTTGTAATTACCAAACGTTT+TGG + Chr1:96250949-96250930 None:intergenic 30.0%
! GATCCTGAATTTGCATTTTA+TGG - Chr1:96249469-96249488 MsG0180005799.01.T01:CDS 30.0%
! TGTGTCTAAGACAAATGATA+AGG - Chr1:96252023-96252042 MsG0180005799.01.T01:intron 30.0%
! TTTGCATTTTATGGACCAAT+GGG - Chr1:96249478-96249497 MsG0180005799.01.T01:CDS 30.0%
!! AACCTATTTATTTTTCCTGG+AGG + Chr1:96253525-96253544 None:intergenic 30.0%
!! CAGATAAATGATGGATGTTA+AGG + Chr1:96253857-96253876 None:intergenic 30.0%
!! TATAAGGTGTCGTATATATG+CGG + Chr1:96253373-96253392 None:intergenic 30.0%
!! TGGAACCTATTTATTTTTCC+TGG + Chr1:96253528-96253547 None:intergenic 30.0%
!! TTATGGTGTTATATTCACTC+AGG - Chr1:96253112-96253131 MsG0180005799.01.T01:intron 30.0%
!!! CAGAAATTTTAGTTCTGACA+AGG - Chr1:96253814-96253833 MsG0180005799.01.T01:CDS 30.0%
!!! TCCTACATTGACTAGTTTTT+AGG - Chr1:96250474-96250493 MsG0180005799.01.T01:intron 30.0%
!!! TTTTACTTTGAGTGTCACTT+AGG + Chr1:96251365-96251384 None:intergenic 30.0%
!!! TTTTCTTTTTGAAGCCAACT+TGG + Chr1:96251206-96251225 None:intergenic 30.0%
AAAGAGAATGAGAAGCAACT+AGG + Chr1:96251268-96251287 None:intergenic 35.0%
AAAGTGCAGTGAATTTATGG+TGG + Chr1:96250644-96250663 None:intergenic 35.0%
AAATGACTACCGTATACATG+AGG + Chr1:96253335-96253354 None:intergenic 35.0%
AAGTTTCTGAGTATAATCGC+TGG - Chr1:96249181-96249200 MsG0180005799.01.T01:three_prime_UTR 35.0%
AATACACTCATCACCCATTA+TGG - Chr1:96251808-96251827 MsG0180005799.01.T01:intron 35.0%
ACAAAAATTAGGTCAGAGCA+CGG + Chr1:96253583-96253602 None:intergenic 35.0%
ACAAATGATAAGGTTTGTGG+TGG - Chr1:96252033-96252052 MsG0180005799.01.T01:intron 35.0%
ACCAAGTAATCAAGTCCAAA+GGG - Chr1:96252968-96252987 MsG0180005799.01.T01:intron 35.0%
ACCATAAATTCACTGCACTT+TGG - Chr1:96250643-96250662 MsG0180005799.01.T01:intron 35.0%
ACTTGTAATGTGAAGTGATG+TGG + Chr1:96251597-96251616 None:intergenic 35.0%
AGAAAGAGCAAAATGAGTCA+AGG + Chr1:96251934-96251953 None:intergenic 35.0%
AGAGAGAATCGTAGTATAAG+GGG + Chr1:96250172-96250191 None:intergenic 35.0%
AGATAGAGATCTAAGTTTGC+AGG + Chr1:96249687-96249706 None:intergenic 35.0%
AGCCTCCAGGAAAAATAAAT+AGG - Chr1:96253520-96253539 MsG0180005799.01.T01:intron 35.0%
AGTAGAAAGAAAGATCAGAG+AGG + Chr1:96251152-96251171 None:intergenic 35.0%
AGTTGAAGAGATTTGAGGAT+GGG - Chr1:96252209-96252228 MsG0180005799.01.T01:intron 35.0%
CAAGAGGACCTAATTCTAAT+AGG + Chr1:96253290-96253309 None:intergenic 35.0%
CAAGCAAACGATAGAAAAGT+AGG - Chr1:96249567-96249586 MsG0180005799.01.T01:CDS 35.0%
CCATAAATTCACTGCACTTT+GGG - Chr1:96250644-96250663 MsG0180005799.01.T01:intron 35.0%
CCATAACAAAAGATGCGTAA+TGG + Chr1:96253098-96253117 None:intergenic 35.0%
CCATGAAAAAAATGCATTGC+TGG + Chr1:96252433-96252452 None:intergenic 35.0%
CTAATTCTAATAGGCCTAAG+AGG + Chr1:96253281-96253300 None:intergenic 35.0%
CTACCTTGTGGAAAAATGTA+TGG - Chr1:96252857-96252876 MsG0180005799.01.T01:intron 35.0%
CTCTTAGGCCTATTAGAATT+AGG - Chr1:96253279-96253298 MsG0180005799.01.T01:intron 35.0%
GAAAGAGCAAAATGAGTCAA+GGG + Chr1:96251933-96251952 None:intergenic 35.0%
GACACTCAAAGTAAAAACAG+AGG - Chr1:96251369-96251388 MsG0180005799.01.T01:intron 35.0%
GAGAGAGAATCGTAGTATAA+GGG + Chr1:96250173-96250192 None:intergenic 35.0%
GAGGTCAATGATCTATCTTT+AGG - Chr1:96252786-96252805 MsG0180005799.01.T01:intron 35.0%
GGATAACAAGGAACTAGTTA+TGG + Chr1:96249929-96249948 None:intergenic 35.0%
GGTCCATAAAATGCAAATTC+AGG + Chr1:96249475-96249494 None:intergenic 35.0%
GTCTTTGAGTACAGAGTAAT+GGG + Chr1:96250195-96250214 None:intergenic 35.0%
TAGAGCGGAAAAAAGTAGTT+AGG + Chr1:96250229-96250248 None:intergenic 35.0%
TATTGTAACTTCAACGCTCT+CGG - Chr1:96254159-96254178 MsG0180005799.01.T01:CDS 35.0%
TCAATGATCTATCTTTAGGC+TGG - Chr1:96252790-96252809 MsG0180005799.01.T01:intron 35.0%
TCAGGATTGTTATAGATTCC+TGG + Chr1:96250705-96250724 None:intergenic 35.0%
TGTACAAGTAGTTGAACATC+AGG + Chr1:96250723-96250742 None:intergenic 35.0%
TTAAGACAATTGCAGACACT+TGG - Chr1:96250610-96250629 MsG0180005799.01.T01:intron 35.0%
TTATGCAGGCATATAAGGAA+TGG - Chr1:96250583-96250602 MsG0180005799.01.T01:intron 35.0%
TTCAGCAACTGCATTAAACA+AGG + Chr1:96249102-96249121 None:intergenic 35.0%
TTTAACAAGCTGTGTTATGC+AGG - Chr1:96250569-96250588 MsG0180005799.01.T01:intron 35.0%
! AAAAATGCATTGCTGGCTAA+CGG + Chr1:96251001-96250982 None:intergenic 35.0%
! AATGCAGTTGCTGAATTTTG+CGG - Chr1:96249107-96249126 MsG0180005799.01.T01:three_prime_UTR 35.0%
! ATTTTCTCCAAAAGCTATGG+TGG + Chr1:96252087-96252106 None:intergenic 35.0%
! CAACCATACATTTTTCCACA+AGG + Chr1:96252863-96252882 None:intergenic 35.0%
! CATACATTTTTCCACAAGGT+AGG + Chr1:96252859-96252878 None:intergenic 35.0%
! CCATTACGCATCTTTTGTTA+TGG - Chr1:96253095-96253114 MsG0180005799.01.T01:intron 35.0%
! TGAATAACCACCATAGCTTT+TGG - Chr1:96252077-96252096 MsG0180005799.01.T01:intron 35.0%
! TTCATTTAGGTTCTGTGAGA+GGG - Chr1:96249375-96249394 MsG0180005799.01.T01:three_prime_UTR 35.0%
!! CTTTGGGATGAGCATAAAAA+TGG - Chr1:96250660-96250679 MsG0180005799.01.T01:intron 35.0%
!! GAGCATTTCTGAAATTGTCT+CGG - Chr1:96253786-96253805 MsG0180005799.01.T01:CDS 35.0%
!! TTTTGATATCGGAGCATTCT+AGG - Chr1:96249501-96249520 MsG0180005799.01.T01:CDS 35.0%
!!! ATTTTTTTCACGGAACCTGA+CGG + Chr1:96250968-96250987 None:intergenic 35.0%
!!! CCAGCAATGCATTTTTTTCA+CGG + Chr1:96252449-96252430 None:intergenic 35.0%
!!! CCAGCAATGCATTTTTTTCA+TGG - Chr1:96252430-96252449 MsG0180005799.01.T01:intron 35.0%
!!! GATTTGATTTTGGGGTTTTG+AGG - Chr1:96252145-96252164 MsG0180005799.01.T01:intron 35.0%
!!! GATTTTGGCTTTCTTTTCTC+AGG - Chr1:96249530-96249549 MsG0180005799.01.T01:CDS 35.0%
!!! TTTTTGAAGCCAACTTGGTA+TGG + Chr1:96251201-96251220 None:intergenic 35.0%
AAAGATCTTTGACCCCTGTT+AGG - Chr1:96251696-96251715 MsG0180005799.01.T01:intron 40.0%
AAAGCAGGGTAGGTAATCAT+TGG + Chr1:96251311-96251330 None:intergenic 40.0%
AAGAAAGCTTCTTCCATAGC+TGG + Chr1:96250091-96250110 None:intergenic 40.0%
AAGATCAGAGAGGAAGAAGA+AGG + Chr1:96251142-96251161 None:intergenic 40.0%
AAGCAGCCCTACATATCTTT+AGG - Chr1:96249782-96249801 MsG0180005799.01.T01:intron 40.0%
AAGGGTTCCTTCTCTGAATT+AGG + Chr1:96249950-96249969 None:intergenic 40.0%
AGAAAGCTTCTTCCATAGCT+GGG + Chr1:96250090-96250109 None:intergenic 40.0%
AGAATGGGCCAATAAAGACA+TGG + Chr1:96249603-96249622 None:intergenic 40.0%
AGTAAAAGGTCCCTGTAAGT+TGG + Chr1:96252549-96252568 None:intergenic 40.0%
AGTTTCGGTTGTCGAAAAGA+TGG - Chr1:96252692-96252711 MsG0180005799.01.T01:CDS 40.0%
ATCGTAGTATAAGGGGTCAA+AGG + Chr1:96250165-96250184 None:intergenic 40.0%
CAAGGATAACTTAAGACCGA+TGG + Chr1:96249084-96249103 None:intergenic 40.0%
CCATTCCAGTTATGTCAGTA+AGG + Chr1:96251529-96251548 None:intergenic 40.0%
CCCAAAGTGCAGTGAATTTA+TGG + Chr1:96250647-96250666 None:intergenic 40.0%
CCGTGAAAAAAATGCATTGC+TGG - Chr1:96250975-96250994 MsG0180005799.01.T01:intron 40.0%
CCTTACTGACATAACTGGAA+TGG - Chr1:96251526-96251545 MsG0180005799.01.T01:intron 40.0%
CGTCTTTGAGTACAGAGTAA+TGG + Chr1:96250196-96250215 None:intergenic 40.0%
CTGTGTTATGCAGGCATATA+AGG - Chr1:96250578-96250597 MsG0180005799.01.T01:intron 40.0%
CTTGTTAGAGAAGATAGCAG+CGG - Chr1:96252177-96252196 MsG0180005799.01.T01:intron 40.0%
GACACATGCTGATATGGAAA+CGG - Chr1:96251015-96251034 MsG0180005799.01.T01:intron 40.0%
GACCAAGTAATCAAGTCCAA+AGG - Chr1:96252967-96252986 MsG0180005799.01.T01:intron 40.0%
GAGAGAGTTGAAGAGATTTG+AGG - Chr1:96252204-96252223 MsG0180005799.01.T01:intron 40.0%
GAGTTGAAGAGATTTGAGGA+TGG - Chr1:96252208-96252227 MsG0180005799.01.T01:intron 40.0%
GATCAAAGAGAGGAAGAAGA+AGG - Chr1:96252258-96252277 MsG0180005799.01.T01:intron 40.0%
GATGAGCATAAAAATGGTGC+TGG - Chr1:96250666-96250685 MsG0180005799.01.T01:intron 40.0%
GGAGAAAATTTGTGTGTTGG+TGG - Chr1:96252098-96252117 MsG0180005799.01.T01:intron 40.0%
GGAGAGAGAATCGTAGTATA+AGG + Chr1:96250174-96250193 None:intergenic 40.0%
GTACAACTCACTCTTCAACT+AGG + Chr1:96251892-96251911 None:intergenic 40.0%
TAATTCAGAGAAGGAACCCT+TGG - Chr1:96249949-96249968 MsG0180005799.01.T01:intron 40.0%
TATATATGCGGTACACCCAA+AGG + Chr1:96253361-96253380 None:intergenic 40.0%
TCACTCCTTACTGACATAAC+TGG - Chr1:96251521-96251540 MsG0180005799.01.T01:intron 40.0%
TCACTCTTCAACTAGGAAGA+CGG + Chr1:96251885-96251904 None:intergenic 40.0%
TGTAAAAGGTCCCTGTAAGT+TGG - Chr1:96250859-96250878 MsG0180005799.01.T01:intron 40.0%
TTACGTGACACATGCTGATA+TGG - Chr1:96251009-96251028 MsG0180005799.01.T01:intron 40.0%
TTTCATGACAGTCTCGGATT+TGG - Chr1:96250765-96250784 MsG0180005799.01.T01:intron 40.0%
! ACTTTCTCGGTTTTTCTCCA+TGG - Chr1:96253963-96253982 MsG0180005799.01.T01:intron 40.0%
! AGGTATTGCTTTCATAGAGC+TGG + Chr1:96251477-96251496 None:intergenic 40.0%
! ATGCAGTTGCTGAATTTTGC+GGG - Chr1:96249108-96249127 MsG0180005799.01.T01:three_prime_UTR 40.0%
! CGAATGGACTTGTGGAATTT+GGG - Chr1:96250269-96250288 MsG0180005799.01.T01:intron 40.0%
! CGTGACACCTCAATCTTTTA+TGG + Chr1:96253606-96253625 None:intergenic 40.0%
! CTTTCTCGGTTTTTCTCCAT+GGG - Chr1:96253964-96253983 MsG0180005799.01.T01:intron 40.0%
! GAAAATTTGTGTGTTGGTGG+AGG - Chr1:96252101-96252120 MsG0180005799.01.T01:intron 40.0%
! GAATGGACTTGTGGAATTTG+GGG - Chr1:96250270-96250289 MsG0180005799.01.T01:intron 40.0%
! GAATTAGGTCCTCTTGCTTT+TGG - Chr1:96253294-96253313 MsG0180005799.01.T01:intron 40.0%
! GTTCATTTAGGTTCTGTGAG+AGG - Chr1:96249374-96249393 MsG0180005799.01.T01:three_prime_UTR 40.0%
! TGCCAGCTGGTTTAATTAGA+GGG + Chr1:96252370-96252389 None:intergenic 40.0%
! TTAGGCCAAGGGATTTTGAA+GGG + Chr1:96251347-96251366 None:intergenic 40.0%
!! ACGGTAGTCATTTTCACCTT+TGG - Chr1:96253342-96253361 MsG0180005799.01.T01:intron 40.0%
!! CGGTAGTCATTTTCACCTTT+GGG - Chr1:96253343-96253362 MsG0180005799.01.T01:intron 40.0%
!! GGACCAATGGGTTTTGATAT+CGG - Chr1:96249490-96249509 MsG0180005799.01.T01:CDS 40.0%
!! TACTTTGGCGGATTTGTACA+CGG - Chr1:96249741-96249760 MsG0180005799.01.T01:intron 40.0%
!! TTGGCTTTCTTTTCTCAGGA+TGG - Chr1:96249534-96249553 MsG0180005799.01.T01:CDS 40.0%
!!! ACTACTTTTTTCCGCTCTAC+TGG - Chr1:96250230-96250249 MsG0180005799.01.T01:intron 40.0%
!!! TCCTCTTGTTTTAGCCTCTT+AGG - Chr1:96253264-96253283 MsG0180005799.01.T01:intron 40.0%
!!! TCTTGCTTTTGGTGTTAGGT+GGG - Chr1:96253305-96253324 MsG0180005799.01.T01:intron 40.0%
!!! TTGATTTTGGGGTTTTGAGG+TGG - Chr1:96252148-96252167 MsG0180005799.01.T01:intron 40.0%
AAAAAATTGAGGCCCATGGC+TGG + Chr1:96253184-96253203 None:intergenic 45.0%
AAAAATTGAGGCCCATGGCT+GGG + Chr1:96253183-96253202 None:intergenic 45.0%
AAGAGATTTGAGGATGGGCA+TGG - Chr1:96252214-96252233 MsG0180005799.01.T01:intron 45.0%
AAGAGGACAGAAAATGGCTG+GGG + Chr1:96253251-96253270 None:intergenic 45.0%
ACAAGAGGACAGAAAATGGC+TGG + Chr1:96253253-96253272 None:intergenic 45.0%
ACAAGGTAGGGTCGATTACA+TGG + Chr1:96252846-96252865 None:intergenic 45.0%
ACTCTAGACTTGACACGAAC+AGG + Chr1:96253556-96253575 None:intergenic 45.0%
AGCAGTAGTAACAGCCTAAC+AGG + Chr1:96251713-96251732 None:intergenic 45.0%
ATACACGGAGATCTACACAC+TGG - Chr1:96249409-96249428 MsG0180005799.01.T01:three_prime_UTR 45.0%
ATATGGAAACGGTTGCCAAC+TGG - Chr1:96251026-96251045 MsG0180005799.01.T01:intron 45.0%
ATGTAATCGACCCTACCTTG+TGG - Chr1:96252845-96252864 MsG0180005799.01.T01:intron 45.0%
CAAAAACGCGCCAACTTACA+GGG - Chr1:96252536-96252555 MsG0180005799.01.T01:CDS 45.0%
CAAAAACGCGCCAACTTACA+GGG + Chr1:96252555-96252536 None:intergenic 45.0%
CAAGAGGACAGAAAATGGCT+GGG + Chr1:96253252-96253271 None:intergenic 45.0%
CACCTAACACCAAAAGCAAG+AGG + Chr1:96253306-96253325 None:intergenic 45.0%
CAGATCAACGTGCATACCAA+GGG + Chr1:96249968-96249987 None:intergenic 45.0%
CAGGGTAGGTAATCATTGGA+AGG + Chr1:96251307-96251326 None:intergenic 45.0%
CAGTAGTAACAGCCTAACAG+GGG + Chr1:96251711-96251730 None:intergenic 45.0%
CATCACCCATTATGGAACCA+CGG - Chr1:96251816-96251835 MsG0180005799.01.T01:intron 45.0%
CTATAGCTGACGCTGGTAAA+CGG - Chr1:96253698-96253717 MsG0180005799.01.T01:intron 45.0%
CTGATACGCAGGAGAATTGT+TGG - Chr1:96253649-96253668 MsG0180005799.01.T01:intron 45.0%
CTTGAATCTATAGCTGACGC+TGG - Chr1:96253691-96253710 MsG0180005799.01.T01:intron 45.0%
GAGGAAGAAGAAGGAAAGAG+TGG + Chr1:96252286-96252267 None:intergenic 45.0%
GATTTGTACACGGAAGAAGC+TGG - Chr1:96249751-96249770 MsG0180005799.01.T01:intron 45.0%
GCAGTAGTAACAGCCTAACA+GGG + Chr1:96251712-96251731 None:intergenic 45.0%
GCCCTTTGGACTTGATTACT+TGG + Chr1:96252972-96252991 None:intergenic 45.0%
GCCTAAGAGGCTAAAACAAG+AGG + Chr1:96253268-96253287 None:intergenic 45.0%
GCTCCGATATCAAAACCCAT+TGG + Chr1:96249496-96249515 None:intergenic 45.0%
GGAAGAAGAAGGAAAGAGTG+TGG - Chr1:96252269-96252288 MsG0180005799.01.T01:intron 45.0%
GGAAGAAGCTTTCTTGCTCA+AGG - Chr1:96250096-96250115 MsG0180005799.01.T01:intron 45.0%
GGAGTGACAGAAACGATATG+AGG + Chr1:96251508-96251527 None:intergenic 45.0%
GTCCCTCTAATTAAACCAGC+TGG - Chr1:96252365-96252384 MsG0180005799.01.T01:intron 45.0%
GTGTTATATTCACTCAGGCC+CGG - Chr1:96253117-96253136 MsG0180005799.01.T01:intron 45.0%
GTTCTCATGCTTTGTCTGCA+TGG - Chr1:96249900-96249919 MsG0180005799.01.T01:intron 45.0%
TATAGCTGACGCTGGTAAAC+GGG - Chr1:96253699-96253718 MsG0180005799.01.T01:intron 45.0%
TATGGAAACGGTTGCCAACT+GGG - Chr1:96251027-96251046 MsG0180005799.01.T01:intron 45.0%
TGCCAACTGGGTTAAGTAGA+GGG - Chr1:96251039-96251058 MsG0180005799.01.T01:intron 45.0%
TTGCCAACTGGGTTAAGTAG+AGG - Chr1:96251038-96251057 MsG0180005799.01.T01:intron 45.0%
TTGGCGCTGCCAAAATGATA+AGG - Chr1:96250784-96250803 MsG0180005799.01.T01:intron 45.0%
TTTCATGGAACTTGACGGCA+GGG - Chr1:96252445-96252464 MsG0180005799.01.T01:intron 45.0%
! CAATCCTGTGTCTAGAACAC+AGG - Chr1:96251962-96251981 MsG0180005799.01.T01:intron 45.0%
! CTTAGGCCAAGGGATTTTGA+AGG + Chr1:96251348-96251367 None:intergenic 45.0%
! CTTGACACGAACAGGTGTTT+TGG + Chr1:96253548-96253567 None:intergenic 45.0%
! GCGAATGGACTTGTGGAATT+TGG - Chr1:96250268-96250287 MsG0180005799.01.T01:intron 45.0%
! GGGTGATGAGTGTATTGATG+TGG + Chr1:96251804-96251823 None:intergenic 45.0%
! GTGCCAGCTGGTTTAATTAG+AGG + Chr1:96252371-96252390 None:intergenic 45.0%
! GTTTTTCTCCATGGGAAGCT+GGG - Chr1:96253972-96253991 MsG0180005799.01.T01:intron 45.0%
! TGCTGAATTTTGCGGGAATG+TGG - Chr1:96249115-96249134 MsG0180005799.01.T01:three_prime_UTR 45.0%
! TTTTCATGGAACTTGACGGC+AGG - Chr1:96252444-96252463 MsG0180005799.01.T01:intron 45.0%
!! GCATAAAAATGGTGCTGGTG+AGG - Chr1:96250671-96250690 MsG0180005799.01.T01:intron 45.0%
!! GGGACTAGTTCCAAAACGTT+TGG - Chr1:96252465-96252484 MsG0180005799.01.T01:intron 45.0%
!! TAGGCCAAGGGATTTTGAAG+GGG + Chr1:96251346-96251365 None:intergenic 45.0%
!! TCTACACACTGGTTCTGTGA+TGG - Chr1:96249420-96249439 MsG0180005799.01.T01:three_prime_UTR 45.0%
!! TTGAGTGTCACTTAGGCCAA+GGG + Chr1:96251358-96251377 None:intergenic 45.0%
!! TTTGAGTGTCACTTAGGCCA+AGG + Chr1:96251359-96251378 None:intergenic 45.0%
!!! CTCTTGCTTTTGGTGTTAGG+TGG - Chr1:96253304-96253323 MsG0180005799.01.T01:intron 45.0%
!!! CTTGCTTTTGGTGTTAGGTG+GGG - Chr1:96253306-96253325 MsG0180005799.01.T01:intron 45.0%
!!! GTCCTCTTGCTTTTGGTGTT+AGG - Chr1:96253301-96253320 MsG0180005799.01.T01:intron 45.0%
!!! TTGCTTTTGGTGTTAGGTGG+GGG - Chr1:96253307-96253326 MsG0180005799.01.T01:intron 45.0%
!!! TTTTTTAAAAGATAAATATA+AGG + Chr1:96253389-96253408 None:intergenic 5.0%
AAAATTGAGGCCCATGGCTG+GGG + Chr1:96253182-96253201 None:intergenic 50.0%
AAGAGTAGAGCTCCCAGCTA+TGG - Chr1:96250075-96250094 MsG0180005799.01.T01:intron 50.0%
ACAGGTTGCGAGAGGAACAT+GGG - Chr1:96251980-96251999 MsG0180005799.01.T01:intron 50.0%
ACGCAGGAGAATTGTTGGTG+TGG - Chr1:96253654-96253673 MsG0180005799.01.T01:intron 50.0%
AGAGGACAGAAAATGGCTGG+GGG + Chr1:96253250-96253269 None:intergenic 50.0%
AGCATCACGGTCAAGATGAG+GGG + Chr1:96249211-96249230 None:intergenic 50.0%
AGCCAGCCTCCGAATTCTTA+GGG - Chr1:96253479-96253498 MsG0180005799.01.T01:intron 50.0%
AGCCTCCGAATTCTTAGGGA+CGG - Chr1:96253483-96253502 MsG0180005799.01.T01:intron 50.0%
AGGAACATGGGGACCAAACA+AGG - Chr1:96251992-96252011 MsG0180005799.01.T01:intron 50.0%
AGGAGTGAAGAAAGCAGGGT+AGG + Chr1:96251321-96251340 None:intergenic 50.0%
AGGGCTCAGGCACTAATACA+CGG - Chr1:96249394-96249413 MsG0180005799.01.T01:three_prime_UTR 50.0%
AGGTGGTGCAGTTGAAACCA+TGG + Chr1:96251850-96251869 None:intergenic 50.0%
ATTGGAAGGCAGAGCACAGA+GGG + Chr1:96251293-96251312 None:intergenic 50.0%
CAGCATCACGGTCAAGATGA+GGG + Chr1:96249212-96249231 None:intergenic 50.0%
CAGGACCGTCCCTAAGAATT+CGG + Chr1:96253491-96253510 None:intergenic 50.0%
CCAAAAACGCGCCAACTTAC+AGG - Chr1:96252535-96252554 MsG0180005799.01.T01:CDS 50.0%
CCAAAAACGCGCCAACTTAC+AGG + Chr1:96252554-96252535 None:intergenic 50.0%
CCAGATCAACGTGCATACCA+AGG + Chr1:96249969-96249988 None:intergenic 50.0%
CCTGGAGGCTTAGTGAATAC+AGG + Chr1:96253510-96253529 None:intergenic 50.0%
CCTGTATTCACTAAGCCTCC+AGG - Chr1:96253507-96253526 MsG0180005799.01.T01:intron 50.0%
CCTTGGTATGCACGTTGATC+TGG - Chr1:96249966-96249985 MsG0180005799.01.T01:intron 50.0%
CTCTTCAACTAGGAAGACGG+AGG + Chr1:96251882-96251901 None:intergenic 50.0%
CTGCTCAAACAAGAGCCCTT+TGG + Chr1:96252986-96253005 None:intergenic 50.0%
CTTGCCCCTTCAAAATCCCT+TGG - Chr1:96251339-96251358 MsG0180005799.01.T01:intron 50.0%
GATTTGAGGATGGGCATGGA+AGG - Chr1:96252218-96252237 MsG0180005799.01.T01:intron 50.0%
GCAAACAGCTCAACAGAGCT+GGG - Chr1:96253152-96253171 MsG0180005799.01.T01:intron 50.0%
GGCAAGGAGTGAAGAAAGCA+GGG + Chr1:96251325-96251344 None:intergenic 50.0%
GGGACGAGTTCCAAAACGTT+TGG + Chr1:96250943-96250962 None:intergenic 50.0%
GTAAACGGGCAACCTGTGAA+CGG - Chr1:96253713-96253732 MsG0180005799.01.T01:intron 50.0%
GTCCCTCTACTTAACCCAGT+TGG + Chr1:96251044-96251063 None:intergenic 50.0%
GTGGGGGTTCCTCATGTATA+CGG - Chr1:96253323-96253342 MsG0180005799.01.T01:intron 50.0%
TCAGCATCACGGTCAAGATG+AGG + Chr1:96249213-96249232 None:intergenic 50.0%
TCATCTTGACCGTGATGCTG+AGG - Chr1:96249212-96249231 MsG0180005799.01.T01:three_prime_UTR 50.0%
TGCAAACAGCTCAACAGAGC+TGG - Chr1:96253151-96253170 MsG0180005799.01.T01:intron 50.0%
TGCCACCGTGGTTCCATAAT+GGG + Chr1:96251824-96251843 None:intergenic 50.0%
TGTTGGTGTGGCACATGTTG+AGG - Chr1:96253666-96253685 MsG0180005799.01.T01:intron 50.0%
TTCAACTAGGAAGACGGAGG+AGG + Chr1:96251879-96251898 None:intergenic 50.0%
TTCCACAAGTCCATTCGCAC+AGG + Chr1:96250266-96250285 None:intergenic 50.0%
! CAAAGGGCTCTTGTTTGAGC+AGG - Chr1:96252984-96253003 MsG0180005799.01.T01:intron 50.0%
! GCAACCTGTGTTCTAGACAC+AGG + Chr1:96251969-96251988 None:intergenic 50.0%
! GGTTTTTCTCCATGGGAAGC+TGG - Chr1:96253971-96253990 MsG0180005799.01.T01:intron 50.0%
! GTGGTGGTGTTCCAAACTTG+AGG - Chr1:96252049-96252068 MsG0180005799.01.T01:intron 50.0%
! GTTGGTGGAGGAAGAGGATT+TGG - Chr1:96252113-96252132 MsG0180005799.01.T01:intron 50.0%
! TCTAGAACACAGGTTGCGAG+AGG - Chr1:96251972-96251991 MsG0180005799.01.T01:intron 50.0%
! TTGTGTGTTGGTGGAGGAAG+AGG - Chr1:96252107-96252126 MsG0180005799.01.T01:intron 50.0%
!! ACACAGGTAGCAGCCTTGTT+TGG + Chr1:96252008-96252027 None:intergenic 50.0%
!! CAAGGGATTTTGAAGGGGCA+AGG + Chr1:96251341-96251360 None:intergenic 50.0%
!! CCTGTAAGTTGGCGCGTTTT+TGG - Chr1:96250870-96250889 MsG0180005799.01.T01:intron 50.0%
!! CCTGTAAGTTGGCGCGTTTT+TGG + Chr1:96250889-96250870 None:intergenic 50.0%
!! CTGGCTCTGGGAATGAAAAG+AGG + Chr1:96253465-96253484 None:intergenic 50.0%
AAATTGAGGCCCATGGCTGG+GGG + Chr1:96253181-96253200 None:intergenic 55.0%
ACCGTGATGCTGAGGCTGTT+CGG - Chr1:96249220-96249239 MsG0180005799.01.T01:three_prime_UTR 55.0%
CACAGGTTGCGAGAGGAACA+TGG - Chr1:96251979-96251998 MsG0180005799.01.T01:intron 55.0%
CACCCATTATGGAACCACGG+TGG - Chr1:96251819-96251838 MsG0180005799.01.T01:intron 55.0%
CAGGTTGCGAGAGGAACATG+GGG - Chr1:96251981-96252000 MsG0180005799.01.T01:intron 55.0%
CATTGGAAGGCAGAGCACAG+AGG + Chr1:96251294-96251313 None:intergenic 55.0%
CCATTCAGCAAGTGCCACGT+AGG - Chr1:96252397-96252416 MsG0180005799.01.T01:intron 55.0%
CTGTGTTAGGCCTGTGCGAA+TGG - Chr1:96250253-96250272 MsG0180005799.01.T01:intron 55.0%
GAAGACGGAGGAGGAGATGA+AGG + Chr1:96251870-96251889 None:intergenic 55.0%
GACCGTCCCTAAGAATTCGG+AGG + Chr1:96253488-96253507 None:intergenic 55.0%
GAGCCAGCCTCCGAATTCTT+AGG - Chr1:96253478-96253497 MsG0180005799.01.T01:intron 55.0%
GAGCTGTTTGCACCCTCTCA+AGG + Chr1:96253143-96253162 None:intergenic 55.0%
GCCTAACACAGCCAGTAGAG+CGG + Chr1:96250244-96250263 None:intergenic 55.0%
GCGGGAATGTGGAGTTATGC+AGG - Chr1:96249126-96249145 MsG0180005799.01.T01:three_prime_UTR 55.0%
GCTGGTGAGGCATATCTTCC+AGG - Chr1:96250684-96250703 MsG0180005799.01.T01:intron 55.0%
GGGCAAGGAGTGAAGAAAGC+AGG + Chr1:96251326-96251345 None:intergenic 55.0%
GTCCCTAAGAATTCGGAGGC+TGG + Chr1:96253484-96253503 None:intergenic 55.0%
GTGCCACCGTGGTTCCATAA+TGG + Chr1:96251825-96251844 None:intergenic 55.0%
GTTATGCAGGCTCACTGAGC+AGG - Chr1:96249139-96249158 MsG0180005799.01.T01:three_prime_UTR 55.0%
TACCATCTCCCAGCTTCCCA+TGG + Chr1:96253983-96254002 None:intergenic 55.0%
TAGGTTCTGTGAGAGGGCTC+AGG - Chr1:96249381-96249400 MsG0180005799.01.T01:three_prime_UTR 55.0%
TGGAGGGCAGTAGTGCTAGT+GGG + Chr1:96253213-96253232 None:intergenic 55.0%
TGTTTGCACCCTCTCAAGGC+CGG + Chr1:96253139-96253158 None:intergenic 55.0%
TTGGAGGGCAGTAGTGCTAG+TGG + Chr1:96253214-96253233 None:intergenic 55.0%
TTTCACGGAACCTGACGGCA+GGG + Chr1:96250963-96250982 None:intergenic 55.0%
! AAGAATTCGGAGGCTGGCTC+TGG + Chr1:96253478-96253497 None:intergenic 55.0%
! AGAATTCGGAGGCTGGCTCT+GGG + Chr1:96253477-96253496 None:intergenic 55.0%
! CCTACGTGGCACTTGCTGAA+TGG + Chr1:96252400-96252419 None:intergenic 55.0%
! GGCACTTGCTGAATGGCAAC+TGG + Chr1:96252393-96252412 None:intergenic 55.0%
! TCCGCTCTACTGGCTGTGTT+AGG - Chr1:96250240-96250259 MsG0180005799.01.T01:intron 55.0%
! TTTTCACGGAACCTGACGGC+AGG + Chr1:96250964-96250983 None:intergenic 55.0%
!! AAACCATGGAAGTGCCACCG+TGG + Chr1:96251836-96251855 None:intergenic 55.0%
AACGGGCAACCTGTGAACGG+CGG - Chr1:96253716-96253735 MsG0180005799.01.T01:intron 60.0%
ATCAAGTGCCCGCCGTTCAC+AGG + Chr1:96253728-96253747 None:intergenic 60.0%
CCCGAACAGCCTCAGCATCA+CGG + Chr1:96249224-96249243 None:intergenic 60.0%
CCGTGATGCTGAGGCTGTTC+GGG - Chr1:96249221-96249240 MsG0180005799.01.T01:three_prime_UTR 60.0%
CTCCATGGGAAGCTGGGAGA+TGG - Chr1:96253978-96253997 MsG0180005799.01.T01:intron 60.0%
GAACCACGGTGGCACTTCCA+TGG - Chr1:96251830-96251849 MsG0180005799.01.T01:intron 60.0%
GACGGAGGAGGAGATGAAGG+TGG + Chr1:96251867-96251886 None:intergenic 60.0%
GTTTGCACCCTCTCAAGGCC+GGG + Chr1:96253138-96253157 None:intergenic 60.0%
! GAATGGCAACTGGTGCCAGC+TGG + Chr1:96252383-96252402 None:intergenic 60.0%
! GGCCTGTGCGAATGGACTTG+TGG - Chr1:96250261-96250280 MsG0180005799.01.T01:intron 60.0%
ACGGGCAACCTGTGAACGGC+GGG - Chr1:96253717-96253736 MsG0180005799.01.T01:intron 65.0%
ACTCAGGCCCGGCCTTGAGA+GGG - Chr1:96253128-96253147 MsG0180005799.01.T01:intron 65.0%
TGGAACTCGTCCCTGCCGTC+AGG - Chr1:96250950-96250969 MsG0180005799.01.T01:intron 65.0%
! CTGGCTAACGGACGCCTACG+TGG + Chr1:96252414-96252433 None:intergenic 65.0%
CACTCAGGCCCGGCCTTGAG+AGG - Chr1:96253127-96253146 MsG0180005799.01.T01:intron 70.0%
TTGAGGCCCATGGCTGGGGG+AGG + Chr1:96253178-96253197 None:intergenic 70.0%
AGCTGGGCCTCCCCCAGCCA+TGG - Chr1:96253168-96253187 MsG0180005799.01.T01:intron 75.0%
GCTGGGCCTCCCCCAGCCAT+GGG - Chr1:96253169-96253188 MsG0180005799.01.T01:intron 75.0%
Chromosome Type Strat End Strand Name
Chr1 gene 96249075 96254198 96249075 ID=MsG0180005799.01;Name=MsG0180005799.01
Chr1 mRNA 96249075 96254198 96249075 ID=MsG0180005799.01.T01;Parent=MsG0180005799.01;Name=MsG0180005799.01.T01;_AED=0.46;_eAED=0.48;_QI=0|0.66|0.25|1|0.66|0.5|4|373|261
Chr1 exon 96249075 96249613 96249075 ID=MsG0180005799.01.T01:exon:19480;Parent=MsG0180005799.01.T01
Chr1 exon 96252468 96252759 96252468 ID=MsG0180005799.01.T01:exon:19479;Parent=MsG0180005799.01.T01
Chr1 exon 96253774 96253889 96253774 ID=MsG0180005799.01.T01:exon:19478;Parent=MsG0180005799.01.T01
Chr1 exon 96253987 96254198 96253987 ID=MsG0180005799.01.T01:exon:19477;Parent=MsG0180005799.01.T01
Chr1 CDS 96253987 96254198 96253987 ID=MsG0180005799.01.T01:cds;Parent=MsG0180005799.01.T01
Chr1 CDS 96253774 96253889 96253774 ID=MsG0180005799.01.T01:cds;Parent=MsG0180005799.01.T01
Chr1 CDS 96252468 96252759 96252468 ID=MsG0180005799.01.T01:cds;Parent=MsG0180005799.01.T01
Chr1 CDS 96249448 96249613 96249448 ID=MsG0180005799.01.T01:cds;Parent=MsG0180005799.01.T01
Chr1 three_prime_UTR 96249075 96249447 96249075 ID=MsG0180005799.01.T01:three_prime_utr;Parent=MsG0180005799.01.T01
Gene Sequence

>MsG0180005799.01.T01

ATGTTACCATCGGTCTTAAGTTATCCTTGTTTAATGCAGTTGCTGAATTTTGCGGGAATGTGGAGTTATGCAGGCTCACTGAGCAGGTTGTTTTCTGACCCATATAAAGTTTCTGAGTATAATCGCTGGACTTCCCCTCATCTTGACCGTGATGCTGAGGCTGTTCGGGAAGACAATCTACTGAAGCTTGAAGTTGCTGAGCTAAAATCAAAGTTCTGTGAGAGGGCTCAGGCACTAATACACGGAGATCTACACACTGGTTCTGTGATGGTTACTCGTGAATCAACTCAAGTTATTGATCCTGAATTTGCATTTTATGGACCAATGGTTTTTTCTTTGTTGAGGTTTTGTTATCCTCTGAACTTTGCAATTCTATATCTTTCTTTAACAAGCTGTGTTATGCAGGCATATAAGGAATGGATTCTTAAGACAATTGCAGACACTTGGAATCTTTTCCACCATAAATTCACTGCACTTTGGGATGAGCATAAAAATGGTGCTGGTGAGGCATATCTTCCAGGAATCTATAACAATCCTGATGTTCAACTACTTGTACAGAAGAAATACATGACAGATTTATTTCATGACAGTCTCGGATTTGGCGCTGCCAAAATGATAAGGAGAATTGTTGGTGTGGCACATGTTGAGGATCTTGAATCTATAGCTGACGCTGGTAAACGGGCAACCTGTGAACGGCGGGCACTTGATTTAGCTAAGATGCTTCTCAAAGAAAGAAGAAAATTTGAGAGCATTTCTGAAATTGTCTCGGCAATTCAGAAATTTTAG

Protein sequence

>MsG0180005799.01.T01

MLPSVLSYPCLMQLLNFAGMWSYAGSLSRLFSDPYKVSEYNRWTSPHLDRDAEAVREDNLLKLEVAELKSKFCERAQALIHGDLHTGSVMVTRESTQVIDPEFAFYGPMVFSLLRFCYPLNFAILYLSLTSCVMQAYKEWILKTIADTWNLFHHKFTALWDEHKNGAGEAYLPGIYNNPDVQLLVQKKYMTDLFHDSLGFGAAKMIRRIVGVAHVEDLESIADAGKRATCERRALDLAKMLLKERRKFESISEIVSAIQKF*