AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680034663.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034663.01.T01 MTR_6g071210 95.755 424 18 0 1 424 1 424 0.0 850
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034663.01.T01 AT3G17810 80.653 429 75 4 1 424 1 426 0.0 712

Find 116 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTGCTGAGTTTATTCTTCT+TGG 0.177042 6:-92444459 MsG0680034663.01.T01:CDS
GATCTGAGTGTTACTGTTAA+TGG 0.180819 6:-92448152 MsG0680034663.01.T01:CDS
TGAAATATTATAATATTATA+TGG 0.199537 6:+92448420 None:intergenic
AACTATTCCCTTTCTGCTAT+TGG 0.227314 6:-92444504 MsG0680034663.01.T01:CDS
AGATTGCAAGCCTTTCTTTA+TGG 0.255090 6:+92443259 None:intergenic
TGGTATGCCGGAGCGCAAAA+TGG 0.263705 6:-92445796 MsG0680034663.01.T01:CDS
CAGAATTGCTAGTTCTCATC+TGG 0.278551 6:+92448273 None:intergenic
TAAGCATTTGGAGGATTATC+TGG 0.282254 6:+92448497 None:intergenic
CTGGAAATATTGTAAAGAAT+TGG 0.307064 6:+92448516 None:intergenic
TCTGCAAAAGGAGAAATTAT+TGG 0.311163 6:-92446296 MsG0680034663.01.T01:CDS
CAAAGGCTACAGTTCCTGTT+TGG 0.312936 6:-92445716 MsG0680034663.01.T01:CDS
CGTTTGGATGAGTAAGCATT+TGG 0.341817 6:+92448485 None:intergenic
ACCATCATCATCAACTTTCA+TGG 0.353220 6:-92442976 MsG0680034663.01.T01:three_prime_UTR
GAACTTAGAGCAACCCTTGC+TGG 0.357378 6:+92444812 None:intergenic
GATCCAATCACAAATGGATT+TGG 0.372017 6:+92448119 None:intergenic
GCTCTTCTTGAAGAAGTTTG+TGG 0.375842 6:-92445750 MsG0680034663.01.T01:CDS
AATACAATCATGAGCGTAAT+GGG 0.377508 6:-92444764 MsG0680034663.01.T01:CDS
CGCAAAATGGGTGCTGCTGT+TGG 0.388137 6:-92445783 MsG0680034663.01.T01:CDS
CGTCCTGAGCCTTGTGTTGA+GGG 0.391022 6:-92444722 MsG0680034663.01.T01:CDS
AAGAGCCTTTGATGAAGGTT+GGG 0.391243 6:-92448063 MsG0680034663.01.T01:CDS
GCTATTGGTGGTGTTGAGAC+TGG 0.396156 6:-92444489 MsG0680034663.01.T01:CDS
GAAGCGATGAGAATTCTATC+AGG 0.397731 6:+92446194 None:intergenic
CTGCAAAAGGAGAAATTATT+GGG 0.403065 6:-92446295 MsG0680034663.01.T01:CDS
ATGCCAAATCCATTTGTGAT+TGG 0.408143 6:-92448122 MsG0680034663.01.T01:CDS
TGCAATTATGAATCACCGTT+TGG 0.411539 6:+92448469 None:intergenic
AAAGGCTACAGTTCCTGTTT+GGG 0.415981 6:-92445715 MsG0680034663.01.T01:CDS
AGAGTTTAAGCAGTTAAAAG+AGG 0.416736 6:-92446222 MsG0680034663.01.T01:CDS
CAATTCACAATATTCTTAGA+AGG 0.427150 6:+92443062 None:intergenic
CGGCTACGGGCTAATGCAAA+TGG 0.429884 6:-92446320 MsG0680034663.01.T01:CDS
AATCCATTTGTGATTGGATC+AGG 0.430806 6:-92448116 MsG0680034663.01.T01:CDS
AAATACAATCATGAGCGTAA+TGG 0.440467 6:-92444765 MsG0680034663.01.T01:CDS
CTCTGAAATATCAGTTATGT+TGG 0.442627 6:+92445680 None:intergenic
TTTAAATTGTAGGTCTGCAC+TGG 0.449110 6:-92443581 MsG0680034663.01.T01:intron
TATTCCCTTTCTGCTATTGG+TGG 0.452822 6:-92444501 MsG0680034663.01.T01:CDS
GCAAGGGTTGCTCTAAGTTC+AGG 0.458325 6:-92444809 MsG0680034663.01.T01:CDS
GGAGTCATCTTAGCCCAAAC+AGG 0.459815 6:+92445702 None:intergenic
TTCATTGGATTGGTCTAGGA+AGG 0.462264 6:-92448240 MsG0680034663.01.T01:CDS
ATCGATAGAGTTGAACAAAC+TGG 0.467226 6:-92446131 MsG0680034663.01.T01:CDS
CATGCACGTCCTAGTAGAGT+TGG 0.475768 6:-92448215 MsG0680034663.01.T01:CDS
GGTATGCCGGAGCGCAAAAT+GGG 0.481117 6:-92445795 MsG0680034663.01.T01:CDS
TGTGAAAGAAAGTGAAAGCA+TGG 0.486791 6:-92443210 MsG0680034663.01.T01:CDS
TCTTGGTGCAAATACTGTCC+AGG 0.487074 6:-92444442 MsG0680034663.01.T01:intron
GCAAAATGGGTGCTGCTGTT+GGG 0.487510 6:-92445782 MsG0680034663.01.T01:CDS
AATTCTCATCGCTTCAATCA+TGG 0.491371 6:-92446186 MsG0680034663.01.T01:CDS
AACACCACCAATAGCAGAAA+GGG 0.493622 6:+92444497 None:intergenic
GGACCTGATCCAATCACAAA+TGG 0.496107 6:+92448113 None:intergenic
TGCACTGGTGTTATGATGCA+TGG 0.496209 6:-92443566 MsG0680034663.01.T01:CDS
GCTTGCAATCTGACAAAGAC+TGG 0.496797 6:-92443247 MsG0680034663.01.T01:CDS
AAAGAGCCTTTGATGAAGGT+TGG 0.497584 6:-92448064 MsG0680034663.01.T01:CDS
ACGTCCTGAGCCTTGTGTTG+AGG 0.498533 6:-92444723 MsG0680034663.01.T01:CDS
GTTTCTGTTTGTAGCCAGCA+AGG 0.499363 6:-92444826 MsG0680034663.01.T01:intron
CATTTGCATTAGCCCGTAGC+CGG 0.499385 6:+92446321 None:intergenic
CAAAGGAAAGCCATAAAGAA+AGG 0.501819 6:-92443269 MsG0680034663.01.T01:CDS
TTGGATGAGTAAGCATTTGG+AGG 0.501821 6:+92448488 None:intergenic
GGTGTTATGATGCATGGCTA+TGG 0.503849 6:-92443560 MsG0680034663.01.T01:CDS
ATGCACGTCCTAGTAGAGTT+GGG 0.505524 6:-92448214 MsG0680034663.01.T01:CDS
TCTGAAATATCAGTTATGTT+GGG 0.506589 6:+92445681 None:intergenic
CTCCTCGTTATGCCCGGCTA+CGG 0.507185 6:-92446334 MsG0680034663.01.T01:CDS
GTGATTGGATCAGGTCCACC+TGG 0.507691 6:-92448107 MsG0680034663.01.T01:CDS
GCAGTTCATCCGATAGCACT+TGG 0.512671 6:-92444576 MsG0680034663.01.T01:CDS
AACCCCTCAACACAAGGCTC+AGG 0.517933 6:+92444719 None:intergenic
CTCATGTCCTCATGGTATGC+CGG 0.520822 6:-92445808 MsG0680034663.01.T01:CDS
TCCTCGTTATGCCCGGCTAC+GGG 0.522700 6:-92446333 MsG0680034663.01.T01:CDS
CAATCTGACAAAGACTGGAC+AGG 0.524903 6:-92443242 MsG0680034663.01.T01:CDS
CTTTCAGCAAGATTCAGAAA+AGG 0.528971 6:+92448336 None:intergenic
AGAACTAGCAATTCTGCACC+TGG 0.533573 6:-92448266 MsG0680034663.01.T01:CDS
ATAACCTTCCCAAGTGCTAT+CGG 0.533776 6:+92444567 None:intergenic
ATGTAACTCCTCGTTATGCC+CGG 0.535192 6:-92446340 MsG0680034663.01.T01:CDS
AATGCAAATGGATCTGCAAA+AGG 0.536497 6:-92446308 MsG0680034663.01.T01:CDS
ATTTGCATTAGCCCGTAGCC+GGG 0.536673 6:+92446322 None:intergenic
TTCTTGAAGAAGTTTGTGGA+TGG 0.536809 6:-92445746 MsG0680034663.01.T01:CDS
ATGAAAAGAGCCTTTGATGA+AGG 0.541144 6:-92448068 MsG0680034663.01.T01:CDS
AGAGCCTTTGATGAAGGTTG+GGG 0.541495 6:-92448062 MsG0680034663.01.T01:CDS
GACAAAGACTGGACAGGAGA+TGG 0.543981 6:-92443236 MsG0680034663.01.T01:CDS
TTTCTGTTTGTAGCCAGCAA+GGG 0.544864 6:-92444825 MsG0680034663.01.T01:intron
TGCTCTAAGTTCAGGATGCG+AGG 0.553949 6:-92444801 MsG0680034663.01.T01:CDS
ATAAACTTCTCATGTCCTCA+TGG 0.555561 6:-92445816 MsG0680034663.01.T01:CDS
TCTGTTAGGTACTCAACTCC+AGG 0.556781 6:-92444615 MsG0680034663.01.T01:intron
CTGCTTAAACTCTTTCAACA+TGG 0.561823 6:+92446232 None:intergenic
CAACACCACCAATAGCAGAA+AGG 0.565808 6:+92444496 None:intergenic
TCTTGCAAATGAAGTGGTGA+AGG 0.566366 6:-92443124 MsG0680034663.01.T01:three_prime_UTR
TTAACAGTAACACTCAGATC+AGG 0.578177 6:+92448155 None:intergenic
ATAACAGTATAATTAGTCCC+AGG 0.587291 6:+92448089 None:intergenic
TATAGCTCTTGCAAATGAAG+TGG 0.590555 6:-92443130 MsG0680034663.01.T01:three_prime_UTR
GTCCTGAGCCTTGTGTTGAG+GGG 0.597609 6:-92444721 MsG0680034663.01.T01:intron
ACCGCCCCAACCTTCATCAA+AGG 0.598376 6:+92448058 None:intergenic
CACACACTGACTTGGTGCAT+AGG 0.598574 6:-92443310 MsG0680034663.01.T01:CDS
TGATTGGATCAGGTCCACCT+GGG 0.601497 6:-92448106 MsG0680034663.01.T01:CDS
CATCAATAGAAGATTTCAGA+GGG 0.602379 6:-92443481 MsG0680034663.01.T01:intron
GCCTTTGATGAAGGTTGGGG+CGG 0.602777 6:-92448059 MsG0680034663.01.T01:CDS
AGAGTACAATAAAGCCGCAT+GGG 0.602901 6:-92446162 MsG0680034663.01.T01:CDS
CAACATAACTGATATTTCAG+AGG 0.605943 6:-92445679 MsG0680034663.01.T01:intron
AGAATTGCTAGTTCTCATCT+GGG 0.607718 6:+92448274 None:intergenic
AGCAAGAAGCAATTAAGCAA+AGG 0.608908 6:-92443286 MsG0680034663.01.T01:CDS
TCTTTCAACATGGTTTCAAG+CGG 0.612116 6:+92446242 None:intergenic
AAGAGTACAATAAAGCCGCA+TGG 0.612930 6:-92446163 MsG0680034663.01.T01:CDS
CAAATGCTTACTCATCCAAA+CGG 0.613014 6:-92448484 MsG0680034663.01.T01:five_prime_UTR
TTGTGGATGGATAAATGCAA+AGG 0.617242 6:-92445733 MsG0680034663.01.T01:CDS
ACATCAATAGAAGATTTCAG+AGG 0.619025 6:-92443482 MsG0680034663.01.T01:CDS
TGTAGTAAAATACTGAAGAG+AGG 0.630038 6:+92443331 None:intergenic
CAGTTCATCCGATAGCACTT+GGG 0.631187 6:-92444575 MsG0680034663.01.T01:CDS
GTACAATAAAGCCGCATGGG+AGG 0.631532 6:-92446159 MsG0680034663.01.T01:CDS
TCATCCGATAGCACTTGGGA+AGG 0.632133 6:-92444571 MsG0680034663.01.T01:CDS
GCCCGTAGCCGGGCATAACG+AGG 0.632333 6:+92446332 None:intergenic
ATTGCGAACCCCTCAACACA+AGG 0.635472 6:+92444713 None:intergenic
ATCGATAAGCTCCTCCCATG+CGG 0.636350 6:+92446148 None:intergenic
AAGCGATGAGAATTCTATCA+GGG 0.636759 6:+92446195 None:intergenic
GCTCTAAGTTCAGGATGCGA+GGG 0.640142 6:-92444800 MsG0680034663.01.T01:CDS
GAACTAGCAATTCTGCACCT+GGG 0.647996 6:-92448265 MsG0680034663.01.T01:CDS
GCCATGAAAGTTGATGATGA+TGG 0.648057 6:+92442975 None:intergenic
CAAAAGGAGAAATTATTGGG+TGG 0.669484 6:-92446292 MsG0680034663.01.T01:CDS
ATTGGTGGTGTTGAGACTGG+TGG 0.671887 6:-92444486 MsG0680034663.01.T01:CDS
TTGCGCTCCGGCATACCATG+AGG 0.673445 6:+92445801 None:intergenic
GACCAATCCAATGAAAACCC+AGG 0.680757 6:+92448248 None:intergenic
ACAGTATAATTAGTCCCAGG+TGG 0.689168 6:+92448092 None:intergenic
GTTAGGTACTCAACTCCAGG+TGG 0.724795 6:-92444612 MsG0680034663.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTTCATATTTCATTATA+AGG + Chr6:92444965-92444984 None:intergenic 10.0%
!! TTATTAGTTAAAATTCATAT+GGG + Chr6:92444553-92444572 None:intergenic 10.0%
!! TTTATTAGTTAAAATTCATA+TGG + Chr6:92444554-92444573 None:intergenic 10.0%
!!! ATGAATTTTAACTAATAAAA+GGG - Chr6:92444555-92444574 MsG0680034663.01.T01:CDS 10.0%
!!! TATGAATTTTAACTAATAAA+AGG - Chr6:92444554-92444573 MsG0680034663.01.T01:CDS 10.0%
!!! TGAAAAACAAAAATTATTTT+TGG + Chr6:92446052-92446071 None:intergenic 10.0%
!! CGTCAAAAAAAAAAAAAAAA+AGG - Chr6:92447486-92447505 MsG0680034663.01.T01:intron 15.0%
!!! ATTGTGAATTGTTTTATATT+AGG - Chr6:92448435-92448454 MsG0680034663.01.T01:five_prime_UTR 15.0%
!!! ATTTTTTGAATAAAAATCTC+AGG - Chr6:92448130-92448149 MsG0680034663.01.T01:CDS 15.0%
!!! GAAATTTTTGATATTCTTTT+AGG - Chr6:92445635-92445654 MsG0680034663.01.T01:intron 15.0%
!!! TCAATTTTTTCCTTAAAAAA+TGG - Chr6:92443173-92443192 MsG0680034663.01.T01:three_prime_UTR 15.0%
!!! TTTTTTGAATAAAAATCTCA+GGG - Chr6:92448131-92448150 MsG0680034663.01.T01:CDS 15.0%
!! CTTGATTAATATAATTGTCA+TGG - Chr6:92443542-92443561 MsG0680034663.01.T01:CDS 20.0%
!! TATTGTTTGTATGAGAAAAT+TGG + Chr6:92448061-92448080 None:intergenic 20.0%
!! TTCTTAAACACCTTAAAATA+TGG + Chr6:92445856-92445875 None:intergenic 20.0%
!!! ATTGTCATGGTTTTAAATAA+CGG - Chr6:92443555-92443574 MsG0680034663.01.T01:CDS 20.0%
! AACAATTTCACATGCAAAAA+GGG + Chr6:92446563-92446582 None:intergenic 25.0%
! AATATATCTCATAGAGCTTA+TGG + Chr6:92443986-92444005 None:intergenic 25.0%
! AATCAATGATCAAATAGAGA+AGG + Chr6:92447297-92447316 None:intergenic 25.0%
! AATTCACATCTGCTAATTAA+AGG + Chr6:92446594-92446613 None:intergenic 25.0%
! ACACCAACACTTTATATTAA+AGG - Chr6:92447097-92447116 MsG0680034663.01.T01:intron 25.0%
! AGAAACAGAAAAAGAATAAG+AGG + Chr6:92443111-92443130 None:intergenic 25.0%
! ATTAAGGAAAAAACTGTCTT+TGG + Chr6:92444631-92444650 None:intergenic 25.0%
! ATTCACATCTGCTAATTAAA+GGG + Chr6:92446593-92446612 None:intergenic 25.0%
! CAATTCACAATATTCTTAGA+AGG + Chr6:92448426-92448445 None:intergenic 25.0%
! CACCTTAAAATATGGTTAAA+AGG + Chr6:92445848-92445867 None:intergenic 25.0%
! CTGGAAATATTGTAAAGAAT+TGG + Chr6:92442972-92442991 None:intergenic 25.0%
! TCATATTTCATTATAAGGTC+AGG + Chr6:92444960-92444979 None:intergenic 25.0%
! TTATTAGTAATACATGTGCA+TGG - Chr6:92443832-92443851 MsG0680034663.01.T01:intron 25.0%
! TTGTCAAATTACAGATATAG+TGG + Chr6:92444826-92444845 None:intergenic 25.0%
! TTTGCCAAAAAAATTCTGTT+AGG - Chr6:92446856-92446875 MsG0680034663.01.T01:intron 25.0%
! TTTGTATGAGAAAATTGGAA+AGG + Chr6:92448056-92448075 None:intergenic 25.0%
!! AGTTAATGATTTTGCGAATT+CGG - Chr6:92443593-92443612 MsG0680034663.01.T01:intron 25.0%
!! ATTGTTTCTTCATAATGTTG+GGG - Chr6:92443731-92443750 MsG0680034663.01.T01:intron 25.0%
!! CATTGTTTCTTCATAATGTT+GGG - Chr6:92443730-92443749 MsG0680034663.01.T01:intron 25.0%
!! GATGATCTTGTTTAAATTGT+AGG - Chr6:92447894-92447913 MsG0680034663.01.T01:intron 25.0%
!! GTCCTTTTAACCATATTTTA+AGG - Chr6:92445843-92445862 MsG0680034663.01.T01:intron 25.0%
!! TATAGTTCTACCTCTTTAAA+TGG - Chr6:92445476-92445495 MsG0680034663.01.T01:intron 25.0%
!! TCATTGTTTCTTCATAATGT+TGG - Chr6:92443729-92443748 MsG0680034663.01.T01:intron 25.0%
!! TCTGAAATATCAGTTATGTT+GGG + Chr6:92445807-92445826 None:intergenic 25.0%
!! TGCTTTTCTGACTATTAAAA+TGG - Chr6:92444317-92444336 MsG0680034663.01.T01:intron 25.0%
!! TGTTTAAAGTTTAAATGCAC+AGG + Chr6:92446087-92446106 None:intergenic 25.0%
!!! ACATTTAGTTTGTATCGATT+AGG - Chr6:92444206-92444225 MsG0680034663.01.T01:intron 25.0%
!!! AGTACCTAACAGAATTTTTT+TGG + Chr6:92446863-92446882 None:intergenic 25.0%
!!! ATTATTTTTGGCTTGAAAAC+AGG + Chr6:92446040-92446059 None:intergenic 25.0%
!!! ATTTGATTGTTTGTTTTGCT+AGG - Chr6:92445095-92445114 MsG0680034663.01.T01:intron 25.0%
!!! ATTTTAAGGTGTTTAAGAAG+TGG - Chr6:92445857-92445876 MsG0680034663.01.T01:intron 25.0%
!!! CTTAAATTCGCCATTTTTTA+AGG + Chr6:92443186-92443205 None:intergenic 25.0%
!!! TAGGTACTTTTGAGATATTT+GGG + Chr6:92446244-92446263 None:intergenic 25.0%
!!! TAGTTCGGTTTTTAAAACAT+AGG + Chr6:92445429-92445448 None:intergenic 25.0%
!!! TATGGATTTTGATTAGTGAT+TGG + Chr6:92443050-92443069 None:intergenic 25.0%
!!! TCAATACAAAAGTGCTTAAA+TGG - Chr6:92444121-92444140 MsG0680034663.01.T01:intron 25.0%
!!! TTATTTTTGGCTTGAAAACA+GGG + Chr6:92446039-92446058 None:intergenic 25.0%
!!! TTTCCAACACACTTTTTTAT+CGG - Chr6:92444466-92444485 MsG0680034663.01.T01:CDS 25.0%
!!! TTTGTTTTTCACAAACTGAA+AGG - Chr6:92446061-92446080 MsG0680034663.01.T01:intron 25.0%
AAAAGGAAGAAGAAAAACAG+AGG + Chr6:92443135-92443154 None:intergenic 30.0%
AAATACAATCATGAGCGTAA+TGG - Chr6:92446720-92446739 MsG0680034663.01.T01:intron 30.0%
AATAAGCTGAAAACAGCTTA+TGG + Chr6:92443962-92443981 None:intergenic 30.0%
AATACAATCATGAGCGTAAT+GGG - Chr6:92446721-92446740 MsG0680034663.01.T01:intron 30.0%
ACATCAATAGAAGATTTCAG+AGG - Chr6:92448003-92448022 MsG0680034663.01.T01:intron 30.0%
ACGCCTTTAATATAAAGTGT+TGG + Chr6:92447103-92447122 None:intergenic 30.0%
ACTTATGATACAATGCTTAC+AGG - Chr6:92443919-92443938 MsG0680034663.01.T01:intron 30.0%
AGAGTTTAAGCAGTTAAAAG+AGG - Chr6:92445263-92445282 MsG0680034663.01.T01:intron 30.0%
ATAACAGTATAATTAGTCCC+AGG + Chr6:92443399-92443418 None:intergenic 30.0%
ATAACTGATATTTCAGAGGT+TGG - Chr6:92445810-92445829 MsG0680034663.01.T01:CDS 30.0%
CAAAACAAAACCACAAAAGA+TGG + Chr6:92444156-92444175 None:intergenic 30.0%
CAACATAACTGATATTTCAG+AGG - Chr6:92445806-92445825 MsG0680034663.01.T01:CDS 30.0%
CATCAATAGAAGATTTCAGA+GGG - Chr6:92448004-92448023 MsG0680034663.01.T01:intron 30.0%
CTGCAAAAGGAGAAATTATT+GGG - Chr6:92445190-92445209 MsG0680034663.01.T01:intron 30.0%
GAACAATTTCACATGCAAAA+AGG + Chr6:92446564-92446583 None:intergenic 30.0%
TCACGTTGTTTAGAGAAAAA+GGG + Chr6:92444357-92444376 None:intergenic 30.0%
TCGTCGAATTATCAAATTTC+TGG - Chr6:92445884-92445903 MsG0680034663.01.T01:intron 30.0%
TCTGCAAAAGGAGAAATTAT+TGG - Chr6:92445189-92445208 MsG0680034663.01.T01:intron 30.0%
TGTAGTAAAATACTGAAGAG+AGG + Chr6:92448157-92448176 None:intergenic 30.0%
TGTCCAAAGAAAATCAAGAT+CGG - Chr6:92446289-92446308 MsG0680034663.01.T01:CDS 30.0%
TTCCTTTAACAAGGAGAAAA+GGG + Chr6:92447271-92447290 None:intergenic 30.0%
TTGCATGACTTATGTTGAAA+GGG - Chr6:92444173-92444192 MsG0680034663.01.T01:intron 30.0%
TTGTGTAAAAAGTCGTTTCT+AGG + Chr6:92446263-92446282 None:intergenic 30.0%
TTTCCTTTAACAAGGAGAAA+AGG + Chr6:92447272-92447291 None:intergenic 30.0%
TTTGACTACACTACTATGTT+AGG - Chr6:92444926-92444945 MsG0680034663.01.T01:intron 30.0%
TTTGCATGACTTATGTTGAA+AGG - Chr6:92444172-92444191 MsG0680034663.01.T01:intron 30.0%
! AACATAAAGCTTGTTTGGTT+GGG + Chr6:92446530-92446549 None:intergenic 30.0%
! AGAAACGACTTTTTACACAA+TGG - Chr6:92446263-92446282 MsG0680034663.01.T01:CDS 30.0%
! AGAAGAACATAAAGCTTGTT+TGG + Chr6:92446535-92446554 None:intergenic 30.0%
! ATAACTGTTCTGTTTGCTTT+TGG - Chr6:92445002-92445021 MsG0680034663.01.T01:intron 30.0%
! ATTTTGAATAGTATTGTCCC+TGG - Chr6:92447838-92447857 MsG0680034663.01.T01:intron 30.0%
! TAACCGATAAAAAAGTGTGT+TGG + Chr6:92444472-92444491 None:intergenic 30.0%
! TACTCATGTATTGTTTCTTG+AGG - Chr6:92444265-92444284 MsG0680034663.01.T01:intron 30.0%
! TTATCGGTTAAATCTCACAT+CGG - Chr6:92444482-92444501 MsG0680034663.01.T01:CDS 30.0%
! TTATCGTGTTAGTTATTTCG+AGG - Chr6:92446634-92446653 MsG0680034663.01.T01:intron 30.0%
!! AGAAGGTATTTCCTTTAACA+AGG + Chr6:92447280-92447299 None:intergenic 30.0%
!! AGTTTGTATCGATTAGGAAA+GGG - Chr6:92444212-92444231 MsG0680034663.01.T01:intron 30.0%
!! CTCTGAAATATCAGTTATGT+TGG + Chr6:92445808-92445827 None:intergenic 30.0%
!! TACAAAAGTGCTTAAATGGT+TGG - Chr6:92444125-92444144 MsG0680034663.01.T01:intron 30.0%
!! TAGTTTGTATCGATTAGGAA+AGG - Chr6:92444211-92444230 MsG0680034663.01.T01:intron 30.0%
!! TATAAAGTGTTGGTGTTACA+AGG + Chr6:92447093-92447112 None:intergenic 30.0%
!! TCAAGACGGACTAAAAATAT+AGG + Chr6:92447211-92447230 None:intergenic 30.0%
!! TGCGCTTTTTAAATTGTTAC+CGG - Chr6:92447742-92447761 MsG0680034663.01.T01:intron 30.0%
!! TTGTAAAAGAGTCTTGTTCT+TGG - Chr6:92444384-92444403 MsG0680034663.01.T01:intron 30.0%
!! TTTCATAGCATTTAGCTCTT+CGG - Chr6:92447804-92447823 MsG0680034663.01.T01:intron 30.0%
!!! CTAGGTACTTTTGAGATATT+TGG + Chr6:92446245-92446264 None:intergenic 30.0%
!!! TGATCATTGATTTTTGAACG+TGG - Chr6:92447305-92447324 MsG0680034663.01.T01:intron 30.0%
AACAAGCAGGACTATGAATT+TGG + Chr6:92446808-92446827 None:intergenic 35.0%
AACTATTCCCTTTCTGCTAT+TGG - Chr6:92446981-92447000 MsG0680034663.01.T01:intron 35.0%
AAGCGATGAGAATTCTATCA+GGG + Chr6:92445293-92445312 None:intergenic 35.0%
AATCCATTTGTGATTGGATC+AGG - Chr6:92443369-92443388 MsG0680034663.01.T01:intron 35.0%
AATGCAAATGGATCTGCAAA+AGG - Chr6:92445177-92445196 MsG0680034663.01.T01:intron 35.0%
AATTCTCATCGCTTCAATCA+TGG - Chr6:92445299-92445318 MsG0680034663.01.T01:intron 35.0%
ACCATCATCATCAACTTTCA+TGG - Chr6:92448509-92448528 MsG0680034663.01.T01:five_prime_UTR 35.0%
AGATTGCAAGCCTTTCTTTA+TGG + Chr6:92448229-92448248 None:intergenic 35.0%
AGCAAGAAGCAATTAAGCAA+AGG - Chr6:92448199-92448218 MsG0680034663.01.T01:CDS 35.0%
AGCAATCTAATGCATTCATG+CGG + Chr6:92446486-92446505 None:intergenic 35.0%
ATAAACTTCTCATGTCCTCA+TGG - Chr6:92445669-92445688 MsG0680034663.01.T01:intron 35.0%
ATATGACTGAACAAACAAGC+AGG + Chr6:92446821-92446840 None:intergenic 35.0%
ATCGATAGAGTTGAACAAAC+TGG - Chr6:92445354-92445373 MsG0680034663.01.T01:intron 35.0%
ATGAAAAGAGCCTTTGATGA+AGG - Chr6:92443417-92443436 MsG0680034663.01.T01:intron 35.0%
ATGAGATTCTTGCACTCAAT+AGG - Chr6:92447518-92447537 MsG0680034663.01.T01:intron 35.0%
ATGCCAAATCCATTTGTGAT+TGG - Chr6:92443363-92443382 MsG0680034663.01.T01:intron 35.0%
ATGTGGGTCCCATATAAATT+TGG - Chr6:92444517-92444536 MsG0680034663.01.T01:CDS 35.0%
CAAAAGGAGAAATTATTGGG+TGG - Chr6:92445193-92445212 MsG0680034663.01.T01:intron 35.0%
CAAAGGAAAGCCATAAAGAA+AGG - Chr6:92448216-92448235 MsG0680034663.01.T01:CDS 35.0%
CAAATGCTTACTCATCCAAA+CGG - Chr6:92443001-92443020 MsG0680034663.01.T01:three_prime_UTR 35.0%
CTCACGTTGTTTAGAGAAAA+AGG + Chr6:92444358-92444377 None:intergenic 35.0%
CTGCTTAAACTCTTTCAACA+TGG + Chr6:92445256-92445275 None:intergenic 35.0%
CTTTCAGCAAGATTCAGAAA+AGG + Chr6:92443152-92443171 None:intergenic 35.0%
GAGTTGTAAGATGTGTTTCT+TGG - Chr6:92445376-92445395 MsG0680034663.01.T01:intron 35.0%
GATCTGTATGATGCTAAATG+TGG - Chr6:92444287-92444306 MsG0680034663.01.T01:intron 35.0%
TAACCGAACGTAGTAAAAAC+TGG - Chr6:92445536-92445555 MsG0680034663.01.T01:intron 35.0%
TAAGCATTTGGAGGATTATC+TGG + Chr6:92442991-92443010 None:intergenic 35.0%
TACCATTGTCAGTATCAAGA+CGG + Chr6:92447225-92447244 None:intergenic 35.0%
TATAGCTCTTGCAAATGAAG+TGG - Chr6:92448355-92448374 MsG0680034663.01.T01:five_prime_UTR 35.0%
TCCTTTAACAAGGAGAAAAG+GGG + Chr6:92447270-92447289 None:intergenic 35.0%
TCTTTCAACATGGTTTCAAG+CGG + Chr6:92445246-92445265 None:intergenic 35.0%
TGAGATTCTTGCACTCAATA+GGG - Chr6:92447519-92447538 MsG0680034663.01.T01:intron 35.0%
TGCAATTATGAATCACCGTT+TGG + Chr6:92443019-92443038 None:intergenic 35.0%
TGCATATAGGCATACATTTG+TGG - Chr6:92447579-92447598 MsG0680034663.01.T01:intron 35.0%
TGGTAGGATATTCTATCCTT+TGG - Chr6:92447240-92447259 MsG0680034663.01.T01:intron 35.0%
TGTAATACAACTGAATGCAC+AGG + Chr6:92444733-92444752 None:intergenic 35.0%
TGTGAAAGAAAGTGAAAGCA+TGG - Chr6:92448275-92448294 MsG0680034663.01.T01:CDS 35.0%
TTAACAGTAACACTCAGATC+AGG + Chr6:92443333-92443352 None:intergenic 35.0%
TTCTTGAAGAAGTTTGTGGA+TGG - Chr6:92445739-92445758 MsG0680034663.01.T01:CDS 35.0%
TTGTGGATGGATAAATGCAA+AGG - Chr6:92445752-92445771 MsG0680034663.01.T01:CDS 35.0%
TTTAAATTGTAGGTCTGCAC+TGG - Chr6:92447904-92447923 MsG0680034663.01.T01:intron 35.0%
TTTGTTCAAATTCCTCTGTG+CGG - Chr6:92444787-92444806 MsG0680034663.01.T01:CDS 35.0%
! AATTGGACTTTTGCATGTGA+GGG + Chr6:92442955-92442974 None:intergenic 35.0%
! ACATAAAGCTTGTTTGGTTG+GGG + Chr6:92446529-92446548 None:intergenic 35.0%
! ACGTAGTAAAAACTGGTTCA+AGG - Chr6:92445543-92445562 MsG0680034663.01.T01:intron 35.0%
! AGAATTGCTAGTTCTCATCT+GGG + Chr6:92443214-92443233 None:intergenic 35.0%
! AGTATCTGAAATGCTCACAT+AGG + Chr6:92445932-92445951 None:intergenic 35.0%
! ATTTTGAACCCAACTCTACT+AGG + Chr6:92443282-92443301 None:intergenic 35.0%
! CAACCGATCTTGATTTTCTT+TGG + Chr6:92446295-92446314 None:intergenic 35.0%
! CTAATGAAAGCATGCTTAGT+GGG - Chr6:92447547-92447566 MsG0680034663.01.T01:intron 35.0%
! GAACATAAAGCTTGTTTGGT+TGG + Chr6:92446531-92446550 None:intergenic 35.0%
! GAACCAGTTTTTACTACGTT+CGG + Chr6:92445542-92445561 None:intergenic 35.0%
! GATCCAATCACAAATGGATT+TGG + Chr6:92443369-92443388 None:intergenic 35.0%
! GATCTGAGTGTTACTGTTAA+TGG - Chr6:92443333-92443352 MsG0680034663.01.T01:CDS 35.0%
! GTTGGTATTTCCATCTTTTG+TGG - Chr6:92444143-92444162 MsG0680034663.01.T01:intron 35.0%
! TAATGAAAGCATGCTTAGTG+GGG - Chr6:92447548-92447567 MsG0680034663.01.T01:intron 35.0%
! TGTGGTTACTTTCAATCACT+TGG - Chr6:92447168-92447187 MsG0680034663.01.T01:intron 35.0%
!! AAGTTGAGTGCTTGATTTGT+TGG - Chr6:92443790-92443809 MsG0680034663.01.T01:intron 35.0%
!! CTTCATAGTTTGTTGCTCTT+CGG - Chr6:92447662-92447681 MsG0680034663.01.T01:intron 35.0%
!! TATTGACTTCGTGAATGTGT+GGG + Chr6:92446327-92446346 None:intergenic 35.0%
!! TTTTACTACACACACTGACT+TGG - Chr6:92448167-92448186 MsG0680034663.01.T01:CDS 35.0%
!!! ATGGTTTTAAATAACGGTCG+AGG - Chr6:92443561-92443580 MsG0680034663.01.T01:CDS 35.0%
AAAGAGCCTTTGATGAAGGT+TGG - Chr6:92443421-92443440 MsG0680034663.01.T01:intron 40.0%
AAAGGCTACAGTTCCTGTTT+GGG - Chr6:92445770-92445789 MsG0680034663.01.T01:CDS 40.0%
AACACCACCAATAGCAGAAA+GGG + Chr6:92446991-92447010 None:intergenic 40.0%
AAGAGCCTTTGATGAAGGTT+GGG - Chr6:92443422-92443441 MsG0680034663.01.T01:intron 40.0%
AAGTAACCAGGCAAAGAATC+AGG + Chr6:92447335-92447354 None:intergenic 40.0%
AATGCTATGAAACACTGACC+AGG + Chr6:92447796-92447815 None:intergenic 40.0%
ACAGTATAATTAGTCCCAGG+TGG + Chr6:92443396-92443415 None:intergenic 40.0%
AGAGTACAATAAAGCCGCAT+GGG - Chr6:92445323-92445342 MsG0680034663.01.T01:intron 40.0%
AGTAACCAGGCAAAGAATCA+GGG + Chr6:92447334-92447353 None:intergenic 40.0%
AGTTGCCATTGGATCAAGAT+CGG - Chr6:92446351-92446370 MsG0680034663.01.T01:CDS 40.0%
ATAACCTTCCCAAGTGCTAT+CGG + Chr6:92446921-92446940 None:intergenic 40.0%
ATGCTATGAAACACTGACCA+GGG + Chr6:92447795-92447814 None:intergenic 40.0%
ATTGTCCGATCTTGATCCAA+TGG + Chr6:92446359-92446378 None:intergenic 40.0%
CCACTAAGCATGCTTTCATT+AGG + Chr6:92447549-92447568 None:intergenic 40.0%
CCGTCCCACCAAATTTATAT+GGG + Chr6:92444528-92444547 None:intergenic 40.0%
CGTTTGGATGAGTAAGCATT+TGG + Chr6:92443003-92443022 None:intergenic 40.0%
CTCTTTAAATGGCCTGAACA+AGG - Chr6:92445487-92445506 MsG0680034663.01.T01:intron 40.0%
CTTGTTCAGGCCATTTAAAG+AGG + Chr6:92445489-92445508 None:intergenic 40.0%
GAAGCGATGAGAATTCTATC+AGG + Chr6:92445294-92445313 None:intergenic 40.0%
GAATACTGCATTGCAGATTG+CGG - Chr6:92443623-92443642 MsG0680034663.01.T01:intron 40.0%
GAGGTAGAACTATAACACGA+AGG + Chr6:92445470-92445489 None:intergenic 40.0%
GATTCTTTGCCTGGTTACTT+GGG - Chr6:92447335-92447354 MsG0680034663.01.T01:intron 40.0%
GCTCTTCTTGAAGAAGTTTG+TGG - Chr6:92445735-92445754 MsG0680034663.01.T01:CDS 40.0%
GCTGCTGAGTTTATTCTTCT+TGG - Chr6:92447026-92447045 MsG0680034663.01.T01:intron 40.0%
GGGTCCCATATAAATTTGGT+GGG - Chr6:92444521-92444540 MsG0680034663.01.T01:CDS 40.0%
GGTGATTCTTTCATCATACC+TGG + Chr6:92447064-92447083 None:intergenic 40.0%
GTCAATACATCAGTTGCCAT+TGG - Chr6:92446340-92446359 MsG0680034663.01.T01:CDS 40.0%
GTCTTGATACTGACAATGGT+AGG - Chr6:92447224-92447243 MsG0680034663.01.T01:intron 40.0%
TATTCCCTTTCTGCTATTGG+TGG - Chr6:92446984-92447003 MsG0680034663.01.T01:intron 40.0%
TCAGAATCTGCAGTAGCATT+TGG - Chr6:92446422-92446441 MsG0680034663.01.T01:intron 40.0%
TCTTGCAAATGAAGTGGTGA+AGG - Chr6:92448361-92448380 MsG0680034663.01.T01:five_prime_UTR 40.0%
TGAATAGTATTGTCCCTGGT+AGG - Chr6:92447842-92447861 MsG0680034663.01.T01:intron 40.0%
TGATTCTTTGCCTGGTTACT+TGG - Chr6:92447334-92447353 MsG0680034663.01.T01:intron 40.0%
TGGGGAAGATATGTGCATAT+AGG - Chr6:92447566-92447585 MsG0680034663.01.T01:intron 40.0%
TGGGTCCCATATAAATTTGG+TGG - Chr6:92444520-92444539 MsG0680034663.01.T01:CDS 40.0%
TTGGATGAGTAAGCATTTGG+AGG + Chr6:92443000-92443019 None:intergenic 40.0%
TTTAACAAGGAGAAAAGGGG+TGG + Chr6:92447267-92447286 None:intergenic 40.0%
TTTCTGTTTGTAGCCAGCAA+GGG - Chr6:92446660-92446679 MsG0680034663.01.T01:intron 40.0%
! AAGAGTACAATAAAGCCGCA+TGG - Chr6:92445322-92445341 MsG0680034663.01.T01:intron 40.0%
! AATGTGTTTGAGAGTGTGTC+GGG + Chr6:92444445-92444464 None:intergenic 40.0%
! AATTGTTACCGGTTGCTCTT+CGG - Chr6:92447753-92447772 MsG0680034663.01.T01:intron 40.0%
! ACCCCTTTTCTCCTTGTTAA+AGG - Chr6:92447266-92447285 MsG0680034663.01.T01:intron 40.0%
! ACTACGTTCGGTTACTTTGA+CGG + Chr6:92445530-92445549 None:intergenic 40.0%
! CAGAATTGCTAGTTCTCATC+TGG + Chr6:92443215-92443234 None:intergenic 40.0%
! CATAAAGCTTGTTTGGTTGG+GGG + Chr6:92446528-92446547 None:intergenic 40.0%
! CCATATAAATTTGGTGGGAC+GGG - Chr6:92444526-92444545 MsG0680034663.01.T01:CDS 40.0%
! CCCATATAAATTTGGTGGGA+CGG - Chr6:92444525-92444544 MsG0680034663.01.T01:CDS 40.0%
! CCTAATGAAAGCATGCTTAG+TGG - Chr6:92447546-92447565 MsG0680034663.01.T01:intron 40.0%
! GAATGTGTTTGAGAGTGTGT+CGG + Chr6:92444446-92444465 None:intergenic 40.0%
! GAATTGGACTTTTGCATGTG+AGG + Chr6:92442956-92442975 None:intergenic 40.0%
!! AACTTGCTGTATCTTGGTTG+GGG - Chr6:92444671-92444690 MsG0680034663.01.T01:intron 40.0%
!! ACAACTTGCTGTATCTTGGT+TGG - Chr6:92444669-92444688 MsG0680034663.01.T01:intron 40.0%
!! CAACTTGCTGTATCTTGGTT+GGG - Chr6:92444670-92444689 MsG0680034663.01.T01:intron 40.0%
!! GCAAACAACTTGCTGTATCT+TGG - Chr6:92444665-92444684 MsG0680034663.01.T01:intron 40.0%
!! GCCATGAAAGTTGATGATGA+TGG + Chr6:92448513-92448532 None:intergenic 40.0%
!! GTATTGACTTCGTGAATGTG+TGG + Chr6:92446328-92446347 None:intergenic 40.0%
!! GTTCTGTTTGCTTTTGGAAG+CGG - Chr6:92445008-92445027 MsG0680034663.01.T01:intron 40.0%
!! GTTGGTGTTACAAGGCTAAA+AGG + Chr6:92447085-92447104 None:intergenic 40.0%
!! TGAGTGCTTGATTTGTTGGT+GGG - Chr6:92443794-92443813 MsG0680034663.01.T01:intron 40.0%
!! TTCATTGGATTGGTCTAGGA+AGG - Chr6:92443245-92443264 MsG0680034663.01.T01:CDS 40.0%
!! TTGAGTGCTTGATTTGTTGG+TGG - Chr6:92443793-92443812 MsG0680034663.01.T01:intron 40.0%
!!! GGTTTTCATTGGATTGGTCT+AGG - Chr6:92443241-92443260 MsG0680034663.01.T01:CDS 40.0%
!!! TCGTGGTTTTATCCTTGTTC+AGG + Chr6:92445502-92445521 None:intergenic 40.0%
AACCGAACTAGACATCGATC+CGG - Chr6:92445439-92445458 MsG0680034663.01.T01:intron 45.0%
ACCACTATTCCCAAGTAACC+AGG + Chr6:92447347-92447366 None:intergenic 45.0%
ACCAGGGACAATCCTAATCA+AGG + Chr6:92447688-92447707 None:intergenic 45.0%
AGAACTAGCAATTCTGCACC+TGG - Chr6:92443219-92443238 MsG0680034663.01.T01:CDS 45.0%
AGAGCCTTTGATGAAGGTTG+GGG - Chr6:92443423-92443442 MsG0680034663.01.T01:intron 45.0%
AGTAACCACATGTGTCGTGT+CGG + Chr6:92447158-92447177 None:intergenic 45.0%
ATAGTATTGTCCCTGGTAGG+AGG - Chr6:92447845-92447864 MsG0680034663.01.T01:intron 45.0%
ATCGGTCCCATCAAATCATG+TGG - Chr6:92444500-92444519 MsG0680034663.01.T01:CDS 45.0%
ATGCACGTCCTAGTAGAGTT+GGG - Chr6:92443271-92443290 MsG0680034663.01.T01:CDS 45.0%
ATGGGACCCACATGATTTGA+TGG + Chr6:92444510-92444529 None:intergenic 45.0%
ATGTAACTCCTCGTTATGCC+CGG - Chr6:92445145-92445164 MsG0680034663.01.T01:intron 45.0%
ATTGCAGATTGCGGTCTTTG+CGG - Chr6:92443632-92443651 MsG0680034663.01.T01:intron 45.0%
CAAAGGCTACAGTTCCTGTT+TGG - Chr6:92445769-92445788 MsG0680034663.01.T01:CDS 45.0%
CAACACCACCAATAGCAGAA+AGG + Chr6:92446992-92447011 None:intergenic 45.0%
CAATCTGACAAAGACTGGAC+AGG - Chr6:92448243-92448262 MsG0680034663.01.T01:CDS 45.0%
CAGTTCATCCGATAGCACTT+GGG - Chr6:92446910-92446929 MsG0680034663.01.T01:intron 45.0%
CATGCTCACGTAAATCAGAG+AGG + Chr6:92446014-92446033 None:intergenic 45.0%
CCAGATATATCCTCCTACCA+GGG + Chr6:92447858-92447877 None:intergenic 45.0%
CCCGTCCCACCAAATTTATA+TGG + Chr6:92444529-92444548 None:intergenic 45.0%
GAACTAGCAATTCTGCACCT+GGG - Chr6:92443220-92443239 MsG0680034663.01.T01:CDS 45.0%
GACCAATCCAATGAAAACCC+AGG + Chr6:92443240-92443259 None:intergenic 45.0%
GCTCTAGCACTATAGAGTAG+CGG + Chr6:92444899-92444918 None:intergenic 45.0%
GCTTGCAATCTGACAAAGAC+TGG - Chr6:92448238-92448257 MsG0680034663.01.T01:CDS 45.0%
GGACCTGATCCAATCACAAA+TGG + Chr6:92443375-92443394 None:intergenic 45.0%
GTCCGTCTTGATACTGACAA+TGG - Chr6:92447220-92447239 MsG0680034663.01.T01:intron 45.0%
GTTTCTGTTTGTAGCCAGCA+AGG - Chr6:92446659-92446678 MsG0680034663.01.T01:intron 45.0%
TCCAGATATATCCTCCTACC+AGG + Chr6:92447859-92447878 None:intergenic 45.0%
TCGGTCCCATCAAATCATGT+GGG - Chr6:92444501-92444520 MsG0680034663.01.T01:CDS 45.0%
TCTGTTAGGTACTCAACTCC+AGG - Chr6:92446870-92446889 MsG0680034663.01.T01:intron 45.0%
TGATTAGGATTGTCCCTGGT+AGG - Chr6:92447688-92447707 MsG0680034663.01.T01:intron 45.0%
TGCATTAGATTGCTGAGTGC+AGG - Chr6:92446492-92446511 MsG0680034663.01.T01:intron 45.0%
TGGGACCCACATGATTTGAT+GGG + Chr6:92444509-92444528 None:intergenic 45.0%
TTAAATAACGGTCGAGGTCG+CGG - Chr6:92443567-92443586 MsG0680034663.01.T01:CDS 45.0%
TTACACGTTGTTCTCAACCG+CGG - Chr6:92444748-92444767 MsG0680034663.01.T01:CDS 45.0%
TTACTTTGACGGTTCGATCG+TGG + Chr6:92445519-92445538 None:intergenic 45.0%
! AAACTGGTTCAAGGTTCAGC+CGG - Chr6:92445552-92445571 MsG0680034663.01.T01:intron 45.0%
! CACCTGGGTTTTCATTGGAT+TGG - Chr6:92443235-92443254 MsG0680034663.01.T01:CDS 45.0%
! GCTTTTGCAGAATAACCACC+TGG + Chr6:92446891-92446910 None:intergenic 45.0%
! GGTGTTATGATGCATGGCTA+TGG - Chr6:92447925-92447944 MsG0680034663.01.T01:intron 45.0%
! TCTTGGTGCAAATACTGTCC+AGG - Chr6:92447043-92447062 MsG0680034663.01.T01:intron 45.0%
! TTCTGCACCTGGGTTTTCAT+TGG - Chr6:92443230-92443249 MsG0680034663.01.T01:CDS 45.0%
!! AGCACTGATGCAGACACAAT+CGG + Chr6:92447644-92447663 None:intergenic 45.0%
!! TGCACTGGTGTTATGATGCA+TGG - Chr6:92447919-92447938 MsG0680034663.01.T01:intron 45.0%
!! GTAAAAAAAAATAAATAAAT+GGG + Chr6:92448110-92448129 None:intergenic 5.0%
!! TGAAATATTATAATATTATA+TGG + Chr6:92443068-92443087 None:intergenic 5.0%
!! TGTAAAAAAAAATAAATAAA+TGG + Chr6:92448111-92448130 None:intergenic 5.0%
AAACCGAACCAGACATCAGC+CGG + Chr6:92445574-92445593 None:intergenic 50.0%
AACTGAATGCACAGGAGACG+AGG + Chr6:92444725-92444744 None:intergenic 50.0%
AATCAAGGCCGAAGAGCAAC+CGG + Chr6:92447673-92447692 None:intergenic 50.0%
ACCGCGGATCGCAAAAATAG+CGG - Chr6:92444764-92444783 MsG0680034663.01.T01:CDS 50.0%
ATCGATAAGCTCCTCCCATG+CGG + Chr6:92445340-92445359 None:intergenic 50.0%
ATCGTTGGATCGAGATCGGA+CGG + Chr6:92446449-92446468 None:intergenic 50.0%
ATGCAGACACAATCGGACAC+TGG + Chr6:92447637-92447656 None:intergenic 50.0%
ATTATAGCACTGCCGCACAG+AGG + Chr6:92444802-92444821 None:intergenic 50.0%
ATTGCGAACCCCTCAACACA+AGG + Chr6:92446775-92446794 None:intergenic 50.0%
ATTTGCATTAGCCCGTAGCC+GGG + Chr6:92445166-92445185 None:intergenic 50.0%
CATGCACGTCCTAGTAGAGT+TGG - Chr6:92443270-92443289 MsG0680034663.01.T01:CDS 50.0%
CATTCATGCGGTCAGCACAT+TGG + Chr6:92446474-92446493 None:intergenic 50.0%
CATTTGCATTAGCCCGTAGC+CGG + Chr6:92445167-92445186 None:intergenic 50.0%
CCACAGATATCCTCCTACCA+GGG + Chr6:92447704-92447723 None:intergenic 50.0%
CCCTGGTAGGAGGATATATC+TGG - Chr6:92447855-92447874 MsG0680034663.01.T01:intron 50.0%
CTATAACACGAAGGTCTCGC+CGG + Chr6:92445461-92445480 None:intergenic 50.0%
CTCATGTCCTCATGGTATGC+CGG - Chr6:92445677-92445696 MsG0680034663.01.T01:intron 50.0%
GAACTTAGAGCAACCCTTGC+TGG + Chr6:92446676-92446695 None:intergenic 50.0%
GACAAAGACTGGACAGGAGA+TGG - Chr6:92448249-92448268 MsG0680034663.01.T01:CDS 50.0%
GCAGTTCATCCGATAGCACT+TGG - Chr6:92446909-92446928 MsG0680034663.01.T01:intron 50.0%
GCCTGGTTACTTGGGAATAG+TGG - Chr6:92447343-92447362 MsG0680034663.01.T01:intron 50.0%
GCCTTGATTAGGATTGTCCC+TGG - Chr6:92447684-92447703 MsG0680034663.01.T01:intron 50.0%
GGAGTCATCTTAGCCCAAAC+AGG + Chr6:92445786-92445805 None:intergenic 50.0%
GGATTCCCTGATTCTTTGCC+TGG - Chr6:92447326-92447345 MsG0680034663.01.T01:intron 50.0%
GGTGATCGTTGGATCGAGAT+CGG + Chr6:92446453-92446472 None:intergenic 50.0%
GTACAATAAAGCCGCATGGG+AGG - Chr6:92445326-92445345 MsG0680034663.01.T01:intron 50.0%
GTCATGCGACATCATGCAAC+TGG - Chr6:92444234-92444253 MsG0680034663.01.T01:intron 50.0%
GTTAGGTACTCAACTCCAGG+TGG - Chr6:92446873-92446892 MsG0680034663.01.T01:intron 50.0%
GTTGCTCTTCGGCCTTGATT+AGG - Chr6:92447673-92447692 MsG0680034663.01.T01:intron 50.0%
TCATCCGATAGCACTTGGGA+AGG - Chr6:92446914-92446933 MsG0680034663.01.T01:intron 50.0%
TCCACAGATATCCTCCTACC+AGG + Chr6:92447705-92447724 None:intergenic 50.0%
TGATTGGATCAGGTCCACCT+GGG - Chr6:92443379-92443398 MsG0680034663.01.T01:intron 50.0%
TTAGGATTGTCCCTGGTAGG+AGG - Chr6:92447691-92447710 MsG0680034663.01.T01:intron 50.0%
! GCAAGGGTTGCTCTAAGTTC+AGG - Chr6:92446676-92446695 MsG0680034663.01.T01:intron 50.0%
! GCTCTAAGTTCAGGATGCGA+GGG - Chr6:92446685-92446704 MsG0680034663.01.T01:intron 50.0%
! GTCAGCACATTGGTGATCGT+TGG + Chr6:92446464-92446483 None:intergenic 50.0%
! TGCTCTAAGTTCAGGATGCG+AGG - Chr6:92446684-92446703 MsG0680034663.01.T01:intron 50.0%
!! ATTGGTGGTGTTGAGACTGG+TGG - Chr6:92446999-92447018 MsG0680034663.01.T01:intron 50.0%
!! CACACACTGACTTGGTGCAT+AGG - Chr6:92448175-92448194 MsG0680034663.01.T01:CDS 50.0%
!! GCAAAATGGGTGCTGCTGTT+GGG - Chr6:92445703-92445722 MsG0680034663.01.T01:CDS 50.0%
!! GCTATTGGTGGTGTTGAGAC+TGG - Chr6:92446996-92447015 MsG0680034663.01.T01:intron 50.0%
!!! ACCGCTATTTTTGCGATCCG+CGG + Chr6:92444768-92444787 None:intergenic 50.0%
AACCCCTCAACACAAGGCTC+AGG + Chr6:92446769-92446788 None:intergenic 55.0%
ACCGCCCCAACCTTCATCAA+AGG + Chr6:92443430-92443449 None:intergenic 55.0%
AGACACCGACACGACACATG+TGG - Chr6:92447150-92447169 MsG0680034663.01.T01:intron 55.0%
CCCTGGTAGGAGGATATCTG+TGG - Chr6:92447701-92447720 MsG0680034663.01.T01:intron 55.0%
CGCCGGATCGATGTCTAGTT+CGG + Chr6:92445444-92445463 None:intergenic 55.0%
CGTGAATGTGTGGGAACGTG+TGG + Chr6:92446318-92446337 None:intergenic 55.0%
GCCTTTGATGAAGGTTGGGG+CGG - Chr6:92443426-92443445 MsG0680034663.01.T01:intron 55.0%
GGAGAAAAGGGGTGGACCAA+AGG + Chr6:92447259-92447278 None:intergenic 55.0%
GGTATGCCGGAGCGCAAAAT+GGG - Chr6:92445690-92445709 MsG0680034663.01.T01:CDS 55.0%
GTGATTGGATCAGGTCCACC+TGG - Chr6:92443378-92443397 MsG0680034663.01.T01:intron 55.0%
TGGTATGCCGGAGCGCAAAA+TGG - Chr6:92445689-92445708 MsG0680034663.01.T01:CDS 55.0%
! ACGTCCTGAGCCTTGTGTTG+AGG - Chr6:92446762-92446781 MsG0680034663.01.T01:intron 55.0%
! CAAGTTGTTTGCTGCAGCGC+TGG + Chr6:92444657-92444676 None:intergenic 55.0%
! CGGCTACGGGCTAATGCAAA+TGG - Chr6:92445165-92445184 MsG0680034663.01.T01:intron 55.0%
! CGTCCTGAGCCTTGTGTTGA+GGG - Chr6:92446763-92446782 MsG0680034663.01.T01:intron 55.0%
! GTCCTGAGCCTTGTGTTGAG+GGG - Chr6:92446764-92446783 MsG0680034663.01.T01:intron 55.0%
!! CGCAAAATGGGTGCTGCTGT+TGG - Chr6:92445702-92445721 MsG0680034663.01.T01:CDS 55.0%
!! GCTGCAGCGCTGGTTGATTA+AGG + Chr6:92444647-92444666 None:intergenic 55.0%
AGGTTCAGCCGGCTGATGTC+TGG - Chr6:92445563-92445582 MsG0680034663.01.T01:intron 60.0%
CAGCCGGCTGATGTCTGGTT+CGG - Chr6:92445568-92445587 MsG0680034663.01.T01:intron 60.0%
CTCCTCGTTATGCCCGGCTA+CGG - Chr6:92445151-92445170 MsG0680034663.01.T01:intron 60.0%
TCCTCGTTATGCCCGGCTAC+GGG - Chr6:92445152-92445171 MsG0680034663.01.T01:intron 60.0%
TTGCGCTCCGGCATACCATG+AGG + Chr6:92445687-92445706 None:intergenic 60.0%
! GCAGCACCCATTTTGCGCTC+CGG + Chr6:92445699-92445718 None:intergenic 60.0%
GCCCGTAGCCGGGCATAACG+AGG + Chr6:92445156-92445175 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr6 gene 92442951 92448556 92442951 ID=MsG0680034663.01;Name=MsG0680034663.01
Chr6 mRNA 92442951 92448556 92442951 ID=MsG0680034663.01.T01;Parent=MsG0680034663.01;Name=MsG0680034663.01.T01;_AED=0.43;_eAED=0.43;_QI=241|1|1|1|1|1|7|248|424
Chr6 exon 92442951 92443355 92442951 ID=MsG0680034663.01.T01:exon:5394;Parent=MsG0680034663.01.T01
Chr6 exon 92443482 92443591 92443482 ID=MsG0680034663.01.T01:exon:5393;Parent=MsG0680034663.01.T01
Chr6 exon 92444443 92444629 92444443 ID=MsG0680034663.01.T01:exon:5392;Parent=MsG0680034663.01.T01
Chr6 exon 92444722 92444834 92444722 ID=MsG0680034663.01.T01:exon:5391;Parent=MsG0680034663.01.T01
Chr6 exon 92445680 92445850 92445680 ID=MsG0680034663.01.T01:exon:5390;Parent=MsG0680034663.01.T01
Chr6 exon 92446127 92446390 92446127 ID=MsG0680034663.01.T01:exon:5389;Parent=MsG0680034663.01.T01
Chr6 exon 92448043 92448556 92448043 ID=MsG0680034663.01.T01:exon:5388;Parent=MsG0680034663.01.T01
Chr6 five_prime_UTR 92448316 92448556 92448316 ID=MsG0680034663.01.T01:five_prime_utr;Parent=MsG0680034663.01.T01
Chr6 CDS 92448043 92448315 92448043 ID=MsG0680034663.01.T01:cds;Parent=MsG0680034663.01.T01
Chr6 CDS 92446127 92446390 92446127 ID=MsG0680034663.01.T01:cds;Parent=MsG0680034663.01.T01
Chr6 CDS 92445680 92445850 92445680 ID=MsG0680034663.01.T01:cds;Parent=MsG0680034663.01.T01
Chr6 CDS 92444722 92444834 92444722 ID=MsG0680034663.01.T01:cds;Parent=MsG0680034663.01.T01
Chr6 CDS 92444443 92444629 92444443 ID=MsG0680034663.01.T01:cds;Parent=MsG0680034663.01.T01
Chr6 CDS 92443482 92443591 92443482 ID=MsG0680034663.01.T01:cds;Parent=MsG0680034663.01.T01
Chr6 CDS 92443199 92443355 92443199 ID=MsG0680034663.01.T01:cds;Parent=MsG0680034663.01.T01
Chr6 three_prime_UTR 92442951 92443198 92442951 ID=MsG0680034663.01.T01:three_prime_utr;Parent=MsG0680034663.01.T01
Gene Sequence

>MsG0680034663.01.T01

ATGGCGAATTTAAGCATGACCCAGATGAGAACTAGCAATTCTGCACCTGGGTTTTCATTGGATTGGTCTAGGAAGGTTCATGCACGTCCTAGTAGAGTTGGGTTCAAAATTTTTGCTTCTGAGAGTCAAGCTTCAGAACCTGATCTGAGTGTTACTGTTAATGGTTTACATATGCCAAATCCATTTGTGATTGGATCAGGTCCACCTGGGACTAATTATACTGTTATGAAAAGAGCCTTTGATGAAGGTTGGGGCGGTGTCATTGCTAAAACTGTATCACTTGATGCAGCAAAAGTTATAAATGTAACTCCTCGTTATGCCCGGCTACGGGCTAATGCAAATGGATCTGCAAAAGGAGAAATTATTGGGTGGCAGAACATTGAACTTATCAGTGATAGACCGCTTGAAACCATGTTGAAAGAGTTTAAGCAGTTAAAAGAGGAGTACCCTGATAGAATTCTCATCGCTTCAATCATGGAAGAGTACAATAAAGCCGCATGGGAGGAGCTTATCGATAGAGTTGAACAAACTGGAGTTGATGCGATTGAAATAAACTTCTCATGTCCTCATGGTATGCCGGAGCGCAAAATGGGTGCTGCTGTTGGGCAAGATTGTGCTCTTCTTGAAGAAGTTTGTGGATGGATAAATGCAAAGGCTACAGTTCCTGTTTGGGCTAAGATGACTCCCAACATAACTGATATTTCAGAGCCAGCAAGGGTTGCTCTAAGTTCAGGATGCGAGGGAGTAGCTGCTATAAATACAATCATGAGCGTAATGGGAATCAATCTCAATACATTACGTCCTGAGCCTTGTGTTGAGGGGTACTCAACTCCAGGTGGTTATTCTGCAAAAGCAGTTCATCCGATAGCACTTGGGAAGGTTATGAGTATTGCGAAAATGATGAAATCAGAGTTTGATAGTGAGAACTATTCCCTTTCTGCTATTGGTGGTGTTGAGACTGGTGGTGATGCTGCTGAGTTTATTCTTCTTGGTGCAAATACTGTCCAGGTCTGCACTGGTGTTATGATGCATGGCTATGGTCTTGTGAAGAAGCTTTCTCTTGAGCTAAAAGACTTCATGAAAAAGCACAATTTCACATCAATAGAAGATTTCAGAGGGGCCTCTCTTCAGTATTTTACTACACACACTGACTTGGTGCATAGGCAGCAAGAAGCAATTAAGCAAAGGAAAGCCATAAAGAAAGGCTTGCAATCTGACAAAGACTGGACAGGAGATGGTTTTGTGAAAGAAAGTGAAAGCATGGTTTCTAATTAA
Protein sequence

>MsG0680034663.01.T01

MANLSMTQMRTSNSAPGFSLDWSRKVHARPSRVGFKIFASESQASEPDLSVTVNGLHMPNPFVIGSGPPGTNYTVMKRAFDEGWGGVIAKTVSLDAAKVINVTPRYARLRANANGSAKGEIIGWQNIELISDRPLETMLKEFKQLKEEYPDRILIASIMEEYNKAAWEELIDRVEQTGVDAIEINFSCPHGMPERKMGAAVGQDCALLEEVCGWINAKATVPVWAKMTPNITDISEPARVALSSGCEGVAAINTIMSVMGINLNTLRPEPCVEGYSTPGGYSAKAVHPIALGKVMSIAKMMKSEFDSENYSLSAIGGVETGGDAAEFILLGANTVQVCTGVMMHGYGLVKKLSLELKDFMKKHNFTSIEDFRGASLQYFTTHTDLVHRQQEAIKQRKAIKKGLQSDKDWTGDGFVKESESMVSN*