AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680034838.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034838.01.T01 MTR_6g477870 68.718 195 25 5 1 171 1 183 1.37e-60 186
MsG0680034838.01.T01 MTR_6g477870 80.741 135 12 3 1 133 1 123 1.93e-48 155
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 30 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTATTTCATGTTTCATTA+AGG 0.171147 6:-95284925 MsG0680034838.01.T01:CDS
ATTGCTATGGCTAACATTAT+TGG 0.205676 6:-95287112 MsG0680034838.01.T01:CDS
CGAAATGCATTTAAGAATTT+CGG 0.236689 6:-95284873 MsG0680034838.01.T01:CDS
CTCTGTCTTAGCTCTGATCT+TGG 0.314316 6:+95284279 None:intergenic
GCTATTTCATGTTTCATTAA+GGG 0.334756 6:-95284924 MsG0680034838.01.T01:CDS
ATGTTAGCCATAGCAATAAC+AGG 0.346916 6:+95287118 None:intergenic
GAAAGTGATTGAATTTGTTA+AGG 0.387977 6:+95287060 None:intergenic
AACGAGGTTGTTGTGTTGTT+GGG 0.393371 6:+95286980 None:intergenic
GGTTGTTGTGTTGTTGGGTT+GGG 0.416370 6:+95286985 None:intergenic
AACTACATTGTGCTATTGCT+TGG 0.427908 6:+95284254 None:intergenic
AAAGTGATTGAATTTGTTAA+GGG 0.448488 6:+95287061 None:intergenic
AAACGAGGTTGTTGTGTTGT+TGG 0.467992 6:+95286979 None:intergenic
CAATGTTCATTGTTCTGTGT+TGG 0.470010 6:-95286927 MsG0680034838.01.T01:CDS
CTTCTAATTCTCGTTCAACT+AGG 0.484383 6:-95286865 MsG0680034838.01.T01:CDS
GGTTACCCCTGTTATTGCTA+TGG 0.490387 6:-95287125 MsG0680034838.01.T01:CDS
AGGTTGTTGTGTTGTTGGGT+TGG 0.492910 6:+95286984 None:intergenic
GAAGATGAGGATTCAGAAGC+AGG 0.501944 6:+95286893 None:intergenic
GATTGCAGTAGAAGAGAAGA+AGG 0.508073 6:+95287085 None:intergenic
TCAACTAGGCTGTATGTTAG+TGG 0.508905 6:-95286851 MsG0680034838.01.T01:CDS
TAAGAATTTCGGTCAACTTG+TGG 0.514390 6:-95284862 MsG0680034838.01.T01:CDS
ATTAGAAGATGAAGAAGATG+AGG 0.530320 6:+95286880 None:intergenic
GGATGGTAGAGTCATATTTG+TGG 0.548348 6:-95284313 MsG0680034838.01.T01:CDS
CAAATATGACTCTACCATCC+AGG 0.555287 6:+95284316 None:intergenic
AATTTCGGTCAACTTGTGGA+TGG 0.604326 6:-95284858 MsG0680034838.01.T01:intron
TGTTAGCCATAGCAATAACA+GGG 0.640317 6:+95287119 None:intergenic
GTTTCTAAGTGATGATGACA+AGG 0.643470 6:+95286949 None:intergenic
AAGGGCTATCATTCGTACAA+CGG 0.659589 6:-95284906 MsG0680034838.01.T01:CDS
GATGAGGATTCAGAAGCAGG+AGG 0.684475 6:+95286896 None:intergenic
TGACAAGGAAGATGAAAACG+AGG 0.702921 6:+95286964 None:intergenic
GTTAGCCATAGCAATAACAG+GGG 0.734349 6:+95287120 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTATTAGTTGTATTTT+TGG - Chr6:95285074-95285093 MsG0680034838.01.T01:intron 10.0%
!!! TGATTACAATTTAAATTTTA+AGG - Chr6:95286603-95286622 MsG0680034838.01.T01:intron 10.0%
!!! TTTTAGTTTTTTTGTTTTAT+GGG - Chr6:95284657-95284676 MsG0680034838.01.T01:intron 10.0%
!! AAAACAAACAATTTCATAAA+AGG - Chr6:95286058-95286077 MsG0680034838.01.T01:intron 15.0%
!! ATAACCTAAAATAAACTTAA+GGG + Chr6:95285239-95285258 None:intergenic 15.0%
!! TAAATGAGAAAAAACATAAA+AGG + Chr6:95284597-95284616 None:intergenic 15.0%
!! TATAACCTAAAATAAACTTA+AGG + Chr6:95285240-95285259 None:intergenic 15.0%
!!! ATTATAGTGAATTTGATTTT+TGG - Chr6:95285902-95285921 MsG0680034838.01.T01:intron 15.0%
!!! CTTTTAGTTTTTTTGTTTTA+TGG - Chr6:95284656-95284675 MsG0680034838.01.T01:intron 15.0%
!!! TGTTATATTTGATTGATTTT+TGG - Chr6:95285956-95285975 MsG0680034838.01.T01:intron 15.0%
!! AAAAACATAAAAGGTTGAAA+AGG + Chr6:95284588-95284607 None:intergenic 20.0%
!! AAAACATAAAAGGTTGAAAA+GGG + Chr6:95284587-95284606 None:intergenic 20.0%
!! AACTCTTTCAATGAAAAAAA+TGG + Chr6:95285721-95285740 None:intergenic 20.0%
!! ACAAAATATTGTCAAATAGT+GGG - Chr6:95286333-95286352 MsG0680034838.01.T01:intron 20.0%
!! ATTCTGTGTAATTTATTTGT+CGG - Chr6:95284892-95284911 MsG0680034838.01.T01:CDS 20.0%
!! CAGAATTAATTCATAATTGA+CGG + Chr6:95285304-95285323 None:intergenic 20.0%
!! CATATATGCATAGAATAAAA+TGG + Chr6:95285514-95285533 None:intergenic 20.0%
!! TACAAAATATTGTCAAATAG+TGG - Chr6:95286332-95286351 MsG0680034838.01.T01:intron 20.0%
!! TTATTCTATGCATATATGTT+TGG - Chr6:95285516-95285535 MsG0680034838.01.T01:intron 20.0%
!!! AAAGTGATTGAATTTGTTAA+GGG + Chr6:95284335-95284354 None:intergenic 20.0%
!!! AGAGTGTATATTTTTTTTCA+TGG - Chr6:95284757-95284776 MsG0680034838.01.T01:intron 20.0%
!!! ATATTTTTTTTCATGGTTTC+TGG - Chr6:95284764-95284783 MsG0680034838.01.T01:intron 20.0%
!!! ATTAGTTGTATTTTTGGATT+GGG - Chr6:95285080-95285099 MsG0680034838.01.T01:intron 20.0%
!!! GATTCTAGAAAGATATAAAA+TGG + Chr6:95286187-95286206 None:intergenic 20.0%
!!! GTTTATTTTAGGTTATAAGT+TGG - Chr6:95285243-95285262 MsG0680034838.01.T01:intron 20.0%
!!! TATTAGTTGTATTTTTGGAT+TGG - Chr6:95285079-95285098 MsG0680034838.01.T01:intron 20.0%
! AATGCTTACATGATTCAAAA+TGG + Chr6:95286103-95286122 None:intergenic 25.0%
! ACCAGTTATATTTCAAAGAA+TGG - Chr6:95285141-95285160 MsG0680034838.01.T01:intron 25.0%
! ATTGATCGTATATAGTTGAA+CGG + Chr6:95285656-95285675 None:intergenic 25.0%
! CGAAATGCATTTAAGAATTT+CGG - Chr6:95286520-95286539 MsG0680034838.01.T01:intron 25.0%
! CTACTTCATGATACAAAAAT+GGG - Chr6:95284723-95284742 MsG0680034838.01.T01:intron 25.0%
! TCTACTTCATGATACAAAAA+TGG - Chr6:95284722-95284741 MsG0680034838.01.T01:intron 25.0%
! TGCTTAATAGCTTAAAAACT+TGG + Chr6:95287024-95287043 None:intergenic 25.0%
! TTAATTCATAATTGACGGAA+AGG + Chr6:95285299-95285318 None:intergenic 25.0%
! TTACATGATTCAAAATGGAA+AGG + Chr6:95286098-95286117 None:intergenic 25.0%
! TTGTACTAAATAGCATATTG+CGG + Chr6:95286317-95286336 None:intergenic 25.0%
!! ACAATAAGTTGTCTTTTAGT+CGG + Chr6:95285405-95285424 None:intergenic 25.0%
!! GAGATAAAGTCTATGTTTTT+GGG + Chr6:95284381-95284400 None:intergenic 25.0%
!! GCTATTTCATGTTTCATTAA+GGG - Chr6:95286469-95286488 MsG0680034838.01.T01:intron 25.0%
!! TACTGGTATATGCATATTTT+TGG - Chr6:95286429-95286448 MsG0680034838.01.T01:intron 25.0%
!! TGAGATAAAGTCTATGTTTT+TGG + Chr6:95284382-95284401 None:intergenic 25.0%
!! TTTCAACTGTTAACCTTTTT+AGG - Chr6:95285979-95285998 MsG0680034838.01.T01:intron 25.0%
!!! GAAAGTGATTGAATTTGTTA+AGG + Chr6:95284336-95284355 None:intergenic 25.0%
!!! TCCATTCTTTGAAATATAAC+TGG + Chr6:95285145-95285164 None:intergenic 25.0%
!!! TGCTATTTCATGTTTCATTA+AGG - Chr6:95286468-95286487 MsG0680034838.01.T01:intron 25.0%
!!! TTGATTTTTGGACATAATTC+AGG - Chr6:95285914-95285933 MsG0680034838.01.T01:intron 25.0%
AATAGAGTAGACACCTAAAA+AGG + Chr6:95285995-95286014 None:intergenic 30.0%
AATCATATACACACGTACAT+TGG - Chr6:95285176-95285195 MsG0680034838.01.T01:intron 30.0%
AATTTATTCAAATTCCGCTG+TGG + Chr6:95286285-95286304 None:intergenic 30.0%
ACGTTTAAAAAGTCTCAAGT+TGG + Chr6:95285449-95285468 None:intergenic 30.0%
ATTAGAAGATGAAGAAGATG+AGG + Chr6:95284516-95284535 None:intergenic 30.0%
ATTGCTATGGCTAACATTAT+TGG - Chr6:95284281-95284300 MsG0680034838.01.T01:CDS 30.0%
CAATGTTGATATTGTTAGGT+TGG + Chr6:95285017-95285036 None:intergenic 30.0%
GAAACCATTAGAATTATCTC+TGG - Chr6:95285770-95285789 MsG0680034838.01.T01:intron 30.0%
TGTAATGTTAGCATCCTTAA+GGG - Chr6:95285422-95285441 MsG0680034838.01.T01:intron 30.0%
TGTAATTTATTTGTCGGTGT+TGG - Chr6:95284898-95284917 MsG0680034838.01.T01:CDS 30.0%
TTGTAATGTTAGCATCCTTA+AGG - Chr6:95285421-95285440 MsG0680034838.01.T01:intron 30.0%
! ACTTGAGACTTTTTAAACGT+AGG - Chr6:95285449-95285468 MsG0680034838.01.T01:intron 30.0%
! CTTGAGACTTTTTAAACGTA+GGG - Chr6:95285450-95285469 MsG0680034838.01.T01:intron 30.0%
! GCTTACTTTAGAAATGAAAG+CGG + Chr6:95286675-95286694 None:intergenic 30.0%
! TCTAGAATCAGATCTTGTTT+CGG - Chr6:95286198-95286217 MsG0680034838.01.T01:intron 30.0%
! TGAAAGCAAGTATTTTGTCT+TGG - Chr6:95285879-95285898 MsG0680034838.01.T01:intron 30.0%
!! AATATTGTCAAATAGTGGGT+TGG - Chr6:95286337-95286356 MsG0680034838.01.T01:intron 30.0%
!! CACATTCTAATAGCTTTGAA+AGG + Chr6:95285346-95285365 None:intergenic 30.0%
!! TGGTCCCTTAAGTTTATTTT+AGG - Chr6:95285232-95285251 MsG0680034838.01.T01:intron 30.0%
AAAGGAAATTGACTGTGTGA+TGG - Chr6:95285835-95285854 MsG0680034838.01.T01:intron 35.0%
AATTTGCGAATAGACCAAGA+GGG - Chr6:95286732-95286751 MsG0680034838.01.T01:intron 35.0%
ACCATTAGAATTATCTCTGG+TGG - Chr6:95285773-95285792 MsG0680034838.01.T01:intron 35.0%
ATGTTAGCCATAGCAATAAC+AGG + Chr6:95284278-95284297 None:intergenic 35.0%
CAATCTACGATTGACAATAC+TGG - Chr6:95286412-95286431 MsG0680034838.01.T01:intron 35.0%
CAATGTTCATTGTTCTGTGT+TGG - Chr6:95284466-95284485 MsG0680034838.01.T01:intron 35.0%
CACTTGTGATATGCAAATCA+AGG + Chr6:95285861-95285880 None:intergenic 35.0%
CTGGCAATGTTGATATTGTT+AGG + Chr6:95285021-95285040 None:intergenic 35.0%
CTTCTAATTCTCGTTCAACT+AGG - Chr6:95284528-95284547 MsG0680034838.01.T01:intron 35.0%
TAAGAATTTCGGTCAACTTG+TGG - Chr6:95286531-95286550 MsG0680034838.01.T01:intron 35.0%
TACGATCAATCCAAACATAC+CGG - Chr6:95285666-95285685 MsG0680034838.01.T01:intron 35.0%
TGTTAGCCATAGCAATAACA+GGG + Chr6:95284277-95284296 None:intergenic 35.0%
TTTGTAACTCTCATGAAGCT+TGG - Chr6:95286935-95286954 MsG0680034838.01.T01:CDS 35.0%
! AGTGGTTTTTCACGTTTACA+TGG + Chr6:95285586-95285605 None:intergenic 35.0%
! GTTTCTAAGTGATGATGACA+AGG + Chr6:95284447-95284466 None:intergenic 35.0%
! TAATTTGCGAATAGACCAAG+AGG - Chr6:95286731-95286750 MsG0680034838.01.T01:intron 35.0%
!! ATTTTTGGATTGGGTGGTAT+AGG - Chr6:95285089-95285108 MsG0680034838.01.T01:intron 35.0%
!! TTTCTTCTAAAACGTCCACA+TGG + Chr6:95285381-95285400 None:intergenic 35.0%
!! TTTTTGGATTGGGTGGTATA+GGG - Chr6:95285090-95285109 MsG0680034838.01.T01:intron 35.0%
!!! AGTTGTATTTTTGGATTGGG+TGG - Chr6:95285083-95285102 MsG0680034838.01.T01:intron 35.0%
AAACGAGGTTGTTGTGTTGT+TGG + Chr6:95284417-95284436 None:intergenic 40.0%
AACTCACACACACAATTGAG+AGG - Chr6:95284803-95284822 MsG0680034838.01.T01:intron 40.0%
AAGAGGAGAAGAAGGATTGA+AGG - Chr6:95286779-95286798 MsG0680034838.01.T01:intron 40.0%
AAGGGCTATCATTCGTACAA+CGG - Chr6:95286487-95286506 MsG0680034838.01.T01:intron 40.0%
AAGTCCTTATCCGGTATGTT+TGG + Chr6:95285679-95285698 None:intergenic 40.0%
AATTTCGGTCAACTTGTGGA+TGG - Chr6:95286535-95286554 MsG0680034838.01.T01:intron 40.0%
ACTACAGTGTTATACCACAG+CGG - Chr6:95286268-95286287 MsG0680034838.01.T01:intron 40.0%
AGAAGGATTGAAGGAATGCA+TGG - Chr6:95286788-95286807 MsG0680034838.01.T01:intron 40.0%
AGACGGTTTACATGCATGTT+TGG - Chr6:95285212-95285231 MsG0680034838.01.T01:intron 40.0%
ATCACCAGATTGACTGTTCA+TGG + Chr6:95286708-95286727 None:intergenic 40.0%
ATGAACAGTCAATCTGGTGA+TGG - Chr6:95286707-95286726 MsG0680034838.01.T01:intron 40.0%
ATGCTGACATCAGTAACGTA+AGG + Chr6:95285271-95285290 None:intergenic 40.0%
ATTATCTCTGGTGGCTGAAA+TGG - Chr6:95285782-95285801 MsG0680034838.01.T01:intron 40.0%
ATTCTGTCTAAATGTCCACG+TGG - Chr6:95285318-95285337 MsG0680034838.01.T01:intron 40.0%
CAAATATGACTCTACCATCC+AGG + Chr6:95287080-95287099 None:intergenic 40.0%
CAATCCAAACATACCGGATA+AGG - Chr6:95285672-95285691 MsG0680034838.01.T01:intron 40.0%
CAGTCAAACAAGTCCTTATC+CGG + Chr6:95285688-95285707 None:intergenic 40.0%
CGTCTTCATAAAAACCACAG+TGG + Chr6:95285604-95285623 None:intergenic 40.0%
GAGTGTTTGTGCTTCATAGT+AGG - Chr6:95284963-95284982 MsG0680034838.01.T01:intron 40.0%
GATCAAAACCACCCAACAAT+TGG + Chr6:95284690-95284709 None:intergenic 40.0%
GATTGCAGTAGAAGAGAAGA+AGG + Chr6:95284311-95284330 None:intergenic 40.0%
GCCACCAGAGATAATTCTAA+TGG + Chr6:95285777-95285796 None:intergenic 40.0%
GGAGTTGAATAGCCTATGTA+TGG + Chr6:95285635-95285654 None:intergenic 40.0%
GGATGGTAGAGTCATATTTG+TGG - Chr6:95287080-95287099 MsG0680034838.01.T01:CDS 40.0%
GGTATAGGGTTGAATGGAAT+TGG - Chr6:95285104-95285123 MsG0680034838.01.T01:intron 40.0%
GTAAACGTGAAAAACCACTG+TGG - Chr6:95285587-95285606 MsG0680034838.01.T01:intron 40.0%
GTTAGCCATAGCAATAACAG+GGG + Chr6:95284276-95284295 None:intergenic 40.0%
TCAACTAGGCTGTATGTTAG+TGG - Chr6:95284542-95284561 MsG0680034838.01.T01:intron 40.0%
TCAATCCTTCTTCTCCTCTT+CGG + Chr6:95286779-95286798 None:intergenic 40.0%
TCTTCGTTATGAAACCGAAG+AGG - Chr6:95286762-95286781 MsG0680034838.01.T01:intron 40.0%
TGAACCATGAACAGTCAATC+TGG - Chr6:95286701-95286720 MsG0680034838.01.T01:intron 40.0%
TGACAAGGAAGATGAAAACG+AGG + Chr6:95284432-95284451 None:intergenic 40.0%
TGCTGACATCAGTAACGTAA+GGG + Chr6:95285270-95285289 None:intergenic 40.0%
TTCACGTTTACATGGAAGCT+TGG + Chr6:95285578-95285597 None:intergenic 40.0%
TTCCTTTAATCTGAGCTACC+AGG + Chr6:95285822-95285841 None:intergenic 40.0%
TTGCTTCTACAAATTCACGC+TGG + Chr6:95285550-95285569 None:intergenic 40.0%
TTGGACATGACAATGACAGA+CGG - Chr6:95285195-95285214 MsG0680034838.01.T01:intron 40.0%
TTGTGCTTCATAGTAGGTCA+TGG - Chr6:95284969-95284988 MsG0680034838.01.T01:intron 40.0%
! AACGAGGTTGTTGTGTTGTT+GGG + Chr6:95284416-95284435 None:intergenic 40.0%
! AGGGTACCAACTTGAAATGT+CGG - Chr6:95285469-95285488 MsG0680034838.01.T01:intron 40.0%
! GGACTTGTTTGACTGTAGAT+TGG - Chr6:95285693-95285712 MsG0680034838.01.T01:intron 40.0%
! TGAAACACTTTTGCAGTTCC+TGG - Chr6:95287059-95287078 MsG0680034838.01.T01:CDS 40.0%
! TGAAGCACAAACACTCCTTT+TGG + Chr6:95284959-95284978 None:intergenic 40.0%
! TTCATGGTTTCTGGATGAAG+TGG - Chr6:95284773-95284792 MsG0680034838.01.T01:intron 40.0%
!! ATGGGTCTTGTTCCAATTGT+TGG - Chr6:95284675-95284694 MsG0680034838.01.T01:intron 40.0%
!! ATTGTCAAATAGTGGGTTGG+TGG - Chr6:95286340-95286359 MsG0680034838.01.T01:intron 40.0%
!! TGGGTCTTGTTCCAATTGTT+GGG - Chr6:95284676-95284695 MsG0680034838.01.T01:intron 40.0%
!! TTGAAATGTCGGTGCTACAT+AGG - Chr6:95285480-95285499 MsG0680034838.01.T01:intron 40.0%
ACGAAGAAAAGCAACCCTCT+TGG + Chr6:95286749-95286768 None:intergenic 45.0%
ATTCTGTGAAGCATGGACAC+CGG - Chr6:95284829-95284848 MsG0680034838.01.T01:intron 45.0%
CAGTTGAGCTAGGAGATTCA+GGG - Chr6:95285038-95285057 MsG0680034838.01.T01:intron 45.0%
GAAGATGAGGATTCAGAAGC+AGG + Chr6:95284503-95284522 None:intergenic 45.0%
GAGGTCAATTCTGTGAAGCA+TGG - Chr6:95284822-95284841 MsG0680034838.01.T01:intron 45.0%
GGATTGAAGGAATGCATGGA+AGG - Chr6:95286792-95286811 MsG0680034838.01.T01:intron 45.0%
GGTTACCCCTGTTATTGCTA+TGG - Chr6:95284268-95284287 MsG0680034838.01.T01:CDS 45.0%
GTGTGTCTCTATTAGCCATG+TGG - Chr6:95285363-95285382 MsG0680034838.01.T01:intron 45.0%
TAGGAGATTCAGGGACTTGT+TGG - Chr6:95285047-95285066 MsG0680034838.01.T01:intron 45.0%
TCAACATTGCCAGTTGAGCT+AGG - Chr6:95285028-95285047 MsG0680034838.01.T01:intron 45.0%
TGAAACCGAAGAGGAGAAGA+AGG - Chr6:95286771-95286790 MsG0680034838.01.T01:intron 45.0%
TGCCTGGTAGCTCAGATTAA+AGG - Chr6:95285817-95285836 MsG0680034838.01.T01:intron 45.0%
TTGGGTGGTATAGGGTTGAA+TGG - Chr6:95285098-95285117 MsG0680034838.01.T01:intron 45.0%
! ACACTTTTGCAGTTCCTGGA+TGG - Chr6:95287063-95287082 MsG0680034838.01.T01:CDS 45.0%
! AGGAGATTCAGGGACTTGTT+GGG - Chr6:95285048-95285067 MsG0680034838.01.T01:intron 45.0%
! AGGTTGTTGTGTTGTTGGGT+TGG + Chr6:95284412-95284431 None:intergenic 45.0%
! CTTTTGGATTAAGCGTGTCC+CGG + Chr6:95284943-95284962 None:intergenic 45.0%
! GGTTGTTGTGTTGTTGGGTT+GGG + Chr6:95284411-95284430 None:intergenic 45.0%
! GTCTTGTTCCAATTGTTGGG+TGG - Chr6:95284679-95284698 MsG0680034838.01.T01:intron 45.0%
!! AGTCTCAAGTTGGTCCCTTA+AGG + Chr6:95285439-95285458 None:intergenic 45.0%
!! CTCTGTCTTAGCTCTGATCT+TGG + Chr6:95287117-95287136 None:intergenic 45.0%
!! GTAGCACCGACATTTCAAGT+TGG + Chr6:95285478-95285497 None:intergenic 45.0%
ATCTGAGCTACCAGGCAAAC+AGG + Chr6:95285814-95285833 None:intergenic 50.0%
CCAGTTGAGCTAGGAGATTC+AGG - Chr6:95285037-95285056 MsG0680034838.01.T01:intron 50.0%
CCTGAATCTCCTAGCTCAAC+TGG + Chr6:95285040-95285059 None:intergenic 50.0%
CGGGACACGCTTAATCCAAA+AGG - Chr6:95284941-95284960 MsG0680034838.01.T01:intron 50.0%
GACGCTGCATGACCATACAT+AGG - Chr6:95285620-95285639 MsG0680034838.01.T01:intron 50.0%
GATGAGGATTCAGAAGCAGG+AGG + Chr6:95284500-95284519 None:intergenic 50.0%
TTCTGTGAAGCATGGACACC+GGG - Chr6:95284830-95284849 MsG0680034838.01.T01:intron 50.0%
!! TAGCTTTGAAAGGTGCCACG+TGG + Chr6:95285336-95285355 None:intergenic 50.0%
ACACGACACATGTCCGACAC+CGG - Chr6:95284921-95284940 MsG0680034838.01.T01:CDS 55.0%
ATGGCGATGTCCTGTTTGCC+TGG - Chr6:95285801-95285820 MsG0680034838.01.T01:intron 55.0%
GATTAAGCGTGTCCCGGTGT+CGG + Chr6:95284937-95284956 None:intergenic 55.0%
AGCAGTGTCTGTGTCGTGCC+CGG + Chr6:95284851-95284870 None:intergenic 60.0%
CACGACACATGTCCGACACC+GGG - Chr6:95284922-95284941 MsG0680034838.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr6 gene 95284266 95287149 95284266 ID=MsG0680034838.01;Name=MsG0680034838.01
Chr6 mRNA 95284266 95287149 95284266 ID=MsG0680034838.01.T01;Parent=MsG0680034838.01;Name=MsG0680034838.01.T01;_AED=0.45;_eAED=0.49;_QI=0|0|0|1|0|0|3|0|171
Chr6 exon 95286848 95287149 95286848 ID=MsG0680034838.01.T01:exon:6339;Parent=MsG0680034838.01.T01
Chr6 exon 95284859 95284956 95284859 ID=MsG0680034838.01.T01:exon:6338;Parent=MsG0680034838.01.T01
Chr6 exon 95284266 95284381 95284266 ID=MsG0680034838.01.T01:exon:6337;Parent=MsG0680034838.01.T01
Chr6 CDS 95286848 95287149 95286848 ID=MsG0680034838.01.T01:cds;Parent=MsG0680034838.01.T01
Chr6 CDS 95284859 95284956 95284859 ID=MsG0680034838.01.T01:cds;Parent=MsG0680034838.01.T01
Chr6 CDS 95284266 95284381 95284266 ID=MsG0680034838.01.T01:cds;Parent=MsG0680034838.01.T01
Gene Sequence

>MsG0680034838.01.T01

ATGGTTACCCCTGTTATTGCTATGGCTAACATTATTGGAGTGCCTTCTTCTCTTCTACTGCAATCACCCTTAACAAATTCAATCACTTTCACTCTCAACATCAAAATCAAAACCCAAAAACATAGACTTTATCTCAATTTCTCCCAACCCAACAACACAACAACCTCGTTTTCATCTTCCTTGTCATCATCACTTAGAAACAATGTTCATTGTTCTGTGTTGGCTTGTCTTCCTCCTGCTTCTGAATCCTCATCTTCTTCATCTTCTAATTCTCGTTCAACTAGGCTGTATGTTAGTGGTAACTTTACACATGCTATTTCATGTTTCATTAAGGGCTATCATTCGTACAACGGAGAGAGCTTGCGAAATGCATTTAAGAATTTCGGTCAACTTGTGGATGCTATTAAGCAATTGTTTACAAGATTTGAAACACTTTTGCAGTTCCTGGATGGTAGAGTCATATTTGTGGAAGTTGCTAAACCAAGATCAGAGCTAAGACAGAGAACCAAGCAATAG
Protein sequence

>MsG0680034838.01.T01

MVTPVIAMANIIGVPSSLLLQSPLTNSITFTLNIKIKTQKHRLYLNFSQPNNTTTSFSSSLSSSLRNNVHCSVLACLPPASESSSSSSSNSRSTRLYVSGNFTHAISCFIKGYHSYNGESLRNAFKNFGQLVDAIKQLFTRFETLLQFLDGRVIFVEVAKPRSELRQRTKQ*