AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680032830.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680032830.01.T01 MTR_6g053090 77.933 358 38 2 1 321 1 354 0.0 533
MsG0680032830.01.T01 MTR_3g024400 46.500 200 106 1 55 254 76 274 1.17e-55 182
MsG0680032830.01.T01 MTR_5g012120 39.744 156 93 1 79 233 4 159 4.68e-36 129
MsG0680032830.01.T01 MTR_5g012120 37.952 166 100 2 71 233 71 236 8.37e-36 130
MsG0680032830.01.T01 MTR_3g024400 45.455 132 71 1 123 254 96 226 9.74e-33 121
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680032830.01.T01 AT4G21190 68.950 219 68 0 35 253 25 243 5.71e-113 330
MsG0680032830.01.T01 AT4G18975 47.208 197 103 1 55 251 58 253 4.25e-59 191
MsG0680032830.01.T01 AT4G18975 47.208 197 103 1 55 251 85 280 4.97e-59 191
MsG0680032830.01.T01 AT4G18975 47.208 197 103 1 55 251 85 280 4.97e-59 191
MsG0680032830.01.T01 AT4G18975 47.208 197 103 1 55 251 85 280 4.97e-59 191
MsG0680032830.01.T01 AT1G04590 38.462 182 111 1 53 233 131 312 3.86e-37 137
MsG0680032830.01.T01 AT1G04590 38.378 185 110 2 53 233 131 315 1.42e-35 132

Find 68 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATGATTCATCTGAGTTTA+TGG 0.081801 6:-50614013 MsG0680032830.01.T01:CDS
ACGTATCTATCGACTTTATT+AGG 0.199277 6:+50614171 None:intergenic
GGCTGATTTCCGGCCAGTTT+TGG 0.201628 6:+50617895 None:intergenic
TCTCGTTATACTTCTAAATT+TGG 0.208592 6:+50613988 None:intergenic
TCCTATAATTACAGTGAAAA+AGG 0.241597 6:-50616182 MsG0680032830.01.T01:CDS
CGGTGGCGGTGGCTGATTTC+CGG 0.284298 6:+50617885 None:intergenic
AATGTCAAAGAAGAAGTTTA+TGG 0.291907 6:-50616241 MsG0680032830.01.T01:CDS
TCCTCTCTTAAGCCTGGATT+TGG 0.327589 6:+50614126 None:intergenic
AAGGAAAGCGTGTAAGAATC+AGG 0.347993 6:-50614206 MsG0680032830.01.T01:CDS
TGAAACTATAGGTAACAAAA+TGG 0.351629 6:-50615922 MsG0680032830.01.T01:intron
GACCAAGATATCCTCGAGTT+TGG 0.361562 6:-50617654 MsG0680032830.01.T01:CDS
TGAATCATTTGAAATTTGTT+TGG 0.368446 6:+50614026 None:intergenic
TTGACGAAGCAGAAGAGCTT+TGG 0.377250 6:-50615823 MsG0680032830.01.T01:CDS
TGCCCGCCAAAACCCAAAAC+TGG 0.381754 6:-50617908 MsG0680032830.01.T01:CDS
AAGTGGATGATGATGGATTT+GGG 0.389153 6:+50617974 None:intergenic
GAAGTGGATGATGATGGATT+TGG 0.396162 6:+50617973 None:intergenic
AGAAGAGACTTCAGAGTTAA+CGG 0.407716 6:-50614094 MsG0680032830.01.T01:CDS
TAGTAGTTCTGTTGTCTCAA+TGG 0.409178 6:-50614322 MsG0680032830.01.T01:CDS
TTCCAAACTCGAGGATATCT+TGG 0.417267 6:+50617652 None:intergenic
GCTTGTGGCGGTGGCGGTGG+CGG 0.417288 6:+50617871 None:intergenic
TGTGGCGGTGGCGGTGGCGG+TGG 0.428547 6:+50617874 None:intergenic
CTATATTCCCATTGCGGTGG+TGG 0.430282 6:+50614237 None:intergenic
AAAATATCCACCACCGCAAT+GGG 0.433687 6:-50614244 MsG0680032830.01.T01:CDS
CTCTAGAATACGAGAAAGAA+TGG 0.450096 6:-50616150 MsG0680032830.01.T01:CDS
ACTCGAGGATATCTTGGTCT+TGG 0.456302 6:+50617658 None:intergenic
CTATCTTCCTCTCTTAAGCC+TGG 0.457380 6:+50614120 None:intergenic
CTCTTGATACCTATGTCGCT+TGG 0.459035 6:-50616216 MsG0680032830.01.T01:CDS
TTTCTACTGCTGCTGATGTA+AGG 0.464140 6:+50617942 None:intergenic
ACTGCTTGTGGCGGTGGCGG+TGG 0.473383 6:+50617868 None:intergenic
ATGTAAGGTTGGTGTGGAAG+TGG 0.475787 6:+50617957 None:intergenic
CATGTAGGTATTTGCAGACA+TGG 0.476328 6:-50614364 MsG0680032830.01.T01:intron
AGTTCTGTTGTCTCAATGGT+TGG 0.480356 6:-50614318 MsG0680032830.01.T01:CDS
TACTGCTGCTGATGTAAGGT+TGG 0.486107 6:+50617946 None:intergenic
CTTCAAAGAGCTAGGTATGA+TGG 0.487411 6:-50614289 MsG0680032830.01.T01:CDS
ATATCTATCTACTGTAAAAG+AGG 0.491255 6:-50615743 MsG0680032830.01.T01:CDS
GGATGATGAACAATTCGAAC+AGG 0.491516 6:-50614073 MsG0680032830.01.T01:CDS
AGCATTACTGCTTGTGGCGG+TGG 0.495362 6:+50617862 None:intergenic
CTTGCATGATAAGATGTTTG+AGG 0.498325 6:-50615720 MsG0680032830.01.T01:intron
CGCCAAAACCCAAAACTGGC+CGG 0.500230 6:-50617904 MsG0680032830.01.T01:CDS
TCTTGATACCTATGTCGCTT+GGG 0.501458 6:-50616215 MsG0680032830.01.T01:CDS
GGATGCCGATTTAAAATGCA+TGG 0.521969 6:-50614052 MsG0680032830.01.T01:CDS
ATTGAGACAACAGAACTACT+AGG 0.527919 6:+50614324 None:intergenic
AACAAAATGGATGCTAAGCA+AGG 0.531400 6:-50615909 MsG0680032830.01.T01:CDS
ATTACTGCTTGTGGCGGTGG+CGG 0.531991 6:+50617865 None:intergenic
GACAATGTTCAACCAAATCC+AGG 0.541175 6:-50614138 MsG0680032830.01.T01:CDS
GCTCTTCTGCTTCGTCAACT+CGG 0.545541 6:+50615828 None:intergenic
TTCTAGTTCCCAAGCGACAT+AGG 0.558781 6:+50616207 None:intergenic
AATACGAGAAAGAATGGAAG+CGG 0.559112 6:-50616144 MsG0680032830.01.T01:CDS
AAGGGTCAAGGAAAGACAAT+GGG 0.563191 6:-50615890 MsG0680032830.01.T01:CDS
AGAATGGAAGCGGATAATAC+AGG 0.564642 6:-50616134 MsG0680032830.01.T01:intron
TTATTAGTCTTCCAAACTCG+AGG 0.571818 6:+50617643 None:intergenic
GGAAATGTCTTCAAAGAGCT+AGG 0.573832 6:-50614297 MsG0680032830.01.T01:CDS
CTGCTGATGTAAGGTTGGTG+TGG 0.594011 6:+50617951 None:intergenic
GGTGTGGAAGTGGATGATGA+TGG 0.594460 6:+50617967 None:intergenic
CGTGTAAGAATCAGGGTGCA+AGG 0.595586 6:-50614198 MsG0680032830.01.T01:CDS
TGGGAATATAGATACATCAA+AGG 0.602911 6:-50614225 MsG0680032830.01.T01:CDS
ACTACTTAATGCTTTAGCAG+AGG 0.604140 6:-50615855 MsG0680032830.01.T01:CDS
ATGTATCTATATTCCCATTG+CGG 0.604796 6:+50614231 None:intergenic
AGGAAAGCGTGTAAGAATCA+GGG 0.610217 6:-50614205 MsG0680032830.01.T01:CDS
TGGATGCTAAGCAAGGGTCA+AGG 0.634274 6:-50615902 MsG0680032830.01.T01:CDS
CAAGGGTCAAGGAAAGACAA+TGG 0.634494 6:-50615891 MsG0680032830.01.T01:CDS
TATCTATATTCCCATTGCGG+TGG 0.638033 6:+50614234 None:intergenic
ACAAAATGGATGCTAAGCAA+GGG 0.649924 6:-50615908 MsG0680032830.01.T01:CDS
ACCAAATCCAGGCTTAAGAG+AGG 0.654831 6:-50614127 MsG0680032830.01.T01:CDS
AGTGAAAGCATTACTGCTTG+TGG 0.656125 6:+50617856 None:intergenic
AAAGCTATTAATGCAGTACA+CGG 0.681216 6:-50615798 MsG0680032830.01.T01:CDS
GAAAGCATTACTGCTTGTGG+CGG 0.705239 6:+50617859 None:intergenic
GTAGGTATTTGCAGACATGG+AGG 0.706718 6:-50614361 MsG0680032830.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATATATTCTGTAAATA+TGG - Chr6:50616483-50616502 MsG0680032830.01.T01:intron 10.0%
!! ATTTACATGTTTACTATATT+CGG + Chr6:50617149-50617168 None:intergenic 15.0%
!!! TAATTTTCTCAAATTATTAG+CGG + Chr6:50614567-50614586 None:intergenic 15.0%
!!! TATTTGATATGTTAATTTGT+TGG + Chr6:50614182-50614201 None:intergenic 15.0%
!! AAAAATCAAATAAAGTGGTA+TGG - Chr6:50616966-50616985 MsG0680032830.01.T01:intron 20.0%
!! AAAGTTATTGGAGTAAAAAT+AGG - Chr6:50616439-50616458 MsG0680032830.01.T01:intron 20.0%
!! ACAAACAAATGTTGTTAATA+TGG - Chr6:50617559-50617578 MsG0680032830.01.T01:intron 20.0%
!! ATGAACATAAAAAAATCACA+AGG + Chr6:50615897-50615916 None:intergenic 20.0%
!! TGGAAGACTAATAAAAAAAT+TGG - Chr6:50614345-50614364 MsG0680032830.01.T01:CDS 20.0%
!! TTGGATAAAAGAAAAGTTAT+TGG - Chr6:50616427-50616446 MsG0680032830.01.T01:intron 20.0%
!! TTGTATATTCAAAGTTCAAA+TGG - Chr6:50616394-50616413 MsG0680032830.01.T01:intron 20.0%
!!! AAAAATTGGAACTATTTCTA+AGG - Chr6:50614359-50614378 MsG0680032830.01.T01:CDS 20.0%
!!! AAATTACTTTCTGAAACTAT+AGG - Chr6:50616046-50616065 MsG0680032830.01.T01:intron 20.0%
!!! TGAATCATTTGAAATTTGTT+TGG + Chr6:50617956-50617975 None:intergenic 20.0%
!!! TTTTTTCAGTATATTTCCAA+TGG + Chr6:50616619-50616638 None:intergenic 20.0%
! AAATAACTGAATGAAAACAG+AGG - Chr6:50616689-50616708 MsG0680032830.01.T01:intron 25.0%
! AAATGATTCATCTGAGTTTA+TGG - Chr6:50617966-50617985 MsG0680032830.01.T01:CDS 25.0%
! AAATTGAGTAAATATTGAGC+CGG + Chr6:50617593-50617612 None:intergenic 25.0%
! AATGTCAAAGAAGAAGTTTA+TGG - Chr6:50615738-50615757 MsG0680032830.01.T01:CDS 25.0%
! ACAAATGTTGTTAATATGGA+TGG - Chr6:50617563-50617582 MsG0680032830.01.T01:intron 25.0%
! ATACTGAAAAAAAATGAGCA+AGG - Chr6:50616627-50616646 MsG0680032830.01.T01:intron 25.0%
! ATATCTATCTACTGTAAAAG+AGG - Chr6:50616236-50616255 MsG0680032830.01.T01:CDS 25.0%
! ATTCCTTTGATTAAAAGAGT+CGG - Chr6:50614932-50614951 MsG0680032830.01.T01:intron 25.0%
! ATTTACTCAATTTCTCATGT+AGG - Chr6:50617600-50617619 MsG0680032830.01.T01:CDS 25.0%
! GGCAAAAAAATCAAATAAAG+TGG - Chr6:50616961-50616980 MsG0680032830.01.T01:intron 25.0%
! TACTGAAAAAAAATGAGCAA+GGG - Chr6:50616628-50616647 MsG0680032830.01.T01:intron 25.0%
! TAGTATTTAACAATGTCAGA+TGG - Chr6:50615065-50615084 MsG0680032830.01.T01:intron 25.0%
! TCCTATAATTACAGTGAAAA+AGG - Chr6:50615797-50615816 MsG0680032830.01.T01:CDS 25.0%
! TCTCTTAAGAAGTAAACATA+CGG - Chr6:50617342-50617361 MsG0680032830.01.T01:intron 25.0%
! TGAAACTATAGGTAACAAAA+TGG - Chr6:50616057-50616076 MsG0680032830.01.T01:intron 25.0%
! TGGGTTAAAGTCATAAAAAT+TGG - Chr6:50615195-50615214 MsG0680032830.01.T01:intron 25.0%
! TTCAAATGGCAAATATACAT+TGG - Chr6:50616408-50616427 MsG0680032830.01.T01:intron 25.0%
!! ATTTTATCAAAGAATCTACG+TGG + Chr6:50616215-50616234 None:intergenic 25.0%
!!! ACCTTTTTCACTGTAATTAT+AGG + Chr6:50615801-50615820 None:intergenic 25.0%
!!! ATTGAATAATGCCATTTTCT+CGG + Chr6:50614858-50614877 None:intergenic 25.0%
!!! CCTTAGTTCTATAGTTTTTA+GGG - Chr6:50614230-50614249 MsG0680032830.01.T01:CDS 25.0%
!!! GATACATTGACTTCTTTATA+TGG + Chr6:50615102-50615121 None:intergenic 25.0%
!!! GATATGTTAATTTGTTGGTA+TGG + Chr6:50614177-50614196 None:intergenic 25.0%
!!! TCCTTAGTTCTATAGTTTTT+AGG - Chr6:50614229-50614248 MsG0680032830.01.T01:CDS 25.0%
!!! TTTCATCAATTAGCTTGTAT+TGG + Chr6:50616522-50616541 None:intergenic 25.0%
AAAAGACTTGTCAAATACTC+AGG - Chr6:50616752-50616771 MsG0680032830.01.T01:intron 30.0%
AAAATAAAACACCATGGTGA+CGG + Chr6:50615360-50615379 None:intergenic 30.0%
AAAGAAGTCAATGTATCCTT+TGG - Chr6:50615105-50615124 MsG0680032830.01.T01:intron 30.0%
AAAGCTATTAATGCAGTACA+CGG - Chr6:50616181-50616200 MsG0680032830.01.T01:CDS 30.0%
AACCAAAATCATAGAGTAAG+AGG - Chr6:50616661-50616680 MsG0680032830.01.T01:intron 30.0%
AACCAAAGCATAAACTACTA+AGG + Chr6:50614972-50614991 None:intergenic 30.0%
AACCTTAGTAGTTTATGCTT+TGG - Chr6:50614967-50614986 MsG0680032830.01.T01:intron 30.0%
AATTTCAAAAAGCTACCACA+TGG - Chr6:50615483-50615502 MsG0680032830.01.T01:intron 30.0%
AGTTCATAGACAAATAGTGA+AGG + Chr6:50615150-50615169 None:intergenic 30.0%
ATAAGACTACTGTATTCCAT+TGG - Chr6:50616600-50616619 MsG0680032830.01.T01:intron 30.0%
ATGAAACAAAGATGTCCATT+CGG - Chr6:50616536-50616555 MsG0680032830.01.T01:intron 30.0%
ATGAAGCATAGATACAAACA+CGG - Chr6:50614500-50614519 MsG0680032830.01.T01:intron 30.0%
ATGTAAGTATTATGTCGTGT+TGG - Chr6:50614876-50614895 MsG0680032830.01.T01:intron 30.0%
ATGTATCTATATTCCCATTG+CGG + Chr6:50617751-50617770 None:intergenic 30.0%
CAGACTAAATTGAACACATA+CGG + Chr6:50617193-50617212 None:intergenic 30.0%
CCCTAAAAACTATAGAACTA+AGG + Chr6:50614233-50614252 None:intergenic 30.0%
CTGAATTAAGATACATTACC+GGG - Chr6:50615260-50615279 MsG0680032830.01.T01:intron 30.0%
GACTTTATACAGAAAACCTT+AGG - Chr6:50615640-50615659 MsG0680032830.01.T01:intron 30.0%
GATGATTTATGTTCCTTCTT+TGG - Chr6:50615994-50616013 MsG0680032830.01.T01:intron 30.0%
GCTGAATTAAGATACATTAC+CGG - Chr6:50615259-50615278 MsG0680032830.01.T01:intron 30.0%
GTTACGGAAAAGTTACTTAT+TGG - Chr6:50615237-50615256 MsG0680032830.01.T01:intron 30.0%
GTTCATAGACAAATAGTGAA+GGG + Chr6:50615149-50615168 None:intergenic 30.0%
GTTTCTTACTAGTTGTGATA+TGG - Chr6:50614989-50615008 MsG0680032830.01.T01:intron 30.0%
TAAGAGAGAAAATCATCAAC+AGG + Chr6:50617329-50617348 None:intergenic 30.0%
TAGAGTCGTTATTTATAGAC+AGG - Chr6:50617043-50617062 MsG0680032830.01.T01:intron 30.0%
TATGGTTTAGCAATAAGTAG+AGG + Chr6:50614159-50614178 None:intergenic 30.0%
TCAAATAAAGTGGTATGGAT+AGG - Chr6:50616971-50616990 MsG0680032830.01.T01:intron 30.0%
TGGGAATATAGATACATCAA+AGG - Chr6:50617754-50617773 MsG0680032830.01.T01:intron 30.0%
TGTTAATATGGATGGAATTC+CGG - Chr6:50617571-50617590 MsG0680032830.01.T01:intron 30.0%
TTGAATGTGATCACATTTGT+CGG - Chr6:50614712-50614731 MsG0680032830.01.T01:intron 30.0%
! AGAACTAACACTTTTATCGA+AGG + Chr6:50614773-50614792 None:intergenic 30.0%
! GGTTTCCATGCATTTTAAAT+CGG + Chr6:50617935-50617954 None:intergenic 30.0%
! TATTTTATGGCGGTTCAAAA+TGG - Chr6:50615374-50615393 MsG0680032830.01.T01:intron 30.0%
!! ACGTATCTATCGACTTTATT+AGG + Chr6:50617811-50617830 None:intergenic 30.0%
!! ATGGAATACAGTAGTCTTAT+TGG + Chr6:50616600-50616619 None:intergenic 30.0%
!! TAGTCTTATTGGCTTCTTAA+TGG + Chr6:50616589-50616608 None:intergenic 30.0%
!! TTTCGTTGATAGTTAGGTTA+CGG - Chr6:50615221-50615240 MsG0680032830.01.T01:intron 30.0%
!!! CACCATGGTGTTTTATTTTA+TGG - Chr6:50615361-50615380 MsG0680032830.01.T01:intron 30.0%
!!! CATGGTGTTTTATTTTATGG+CGG - Chr6:50615364-50615383 MsG0680032830.01.T01:intron 30.0%
!!! TGGTAGCTTTTTGAAATTTG+TGG + Chr6:50615481-50615500 None:intergenic 30.0%
!!! TGTCTATGAACTAGTCTTTT+GGG - Chr6:50615158-50615177 MsG0680032830.01.T01:intron 30.0%
!!! TTGTCTATGAACTAGTCTTT+TGG - Chr6:50615157-50615176 MsG0680032830.01.T01:intron 30.0%
AAAAAAAATGAGCAAGGGAG+AGG - Chr6:50616633-50616652 MsG0680032830.01.T01:intron 35.0%
AACAAAATGGATGCTAAGCA+AGG - Chr6:50616070-50616089 MsG0680032830.01.T01:intron 35.0%
AATACGAGAAAGAATGGAAG+CGG - Chr6:50615835-50615854 MsG0680032830.01.T01:CDS 35.0%
AATGAAAACAGAGGCAGAAA+AGG - Chr6:50616698-50616717 MsG0680032830.01.T01:intron 35.0%
ACAAAATGGATGCTAAGCAA+GGG - Chr6:50616071-50616090 MsG0680032830.01.T01:intron 35.0%
ACAATCCAGTCCTATATTCT+AGG + Chr6:50617381-50617400 None:intergenic 35.0%
ACTACTTAATGCTTTAGCAG+AGG - Chr6:50616124-50616143 MsG0680032830.01.T01:intron 35.0%
AGAAGAGACTTCAGAGTTAA+CGG - Chr6:50617885-50617904 MsG0680032830.01.T01:CDS 35.0%
ATAGATACAAACACGGATAC+CGG - Chr6:50614507-50614526 MsG0680032830.01.T01:intron 35.0%
ATCTCTTGCAGTCAGTTATT+TGG + Chr6:50617489-50617508 None:intergenic 35.0%
ATGAAAACAGAGGCAGAAAA+GGG - Chr6:50616699-50616718 MsG0680032830.01.T01:intron 35.0%
ATTACCGGGTTGTCAAATAT+CGG - Chr6:50615274-50615293 MsG0680032830.01.T01:intron 35.0%
ATTGAGACAACAGAACTACT+AGG + Chr6:50617658-50617677 None:intergenic 35.0%
CCTTCACAAATTTCTCATAC+CGG + Chr6:50615334-50615353 None:intergenic 35.0%
CGCCATAAAATAAAACACCA+TGG + Chr6:50615366-50615385 None:intergenic 35.0%
CTGTTAGTTATCCGAGAAAA+TGG - Chr6:50614844-50614863 MsG0680032830.01.T01:intron 35.0%
CTTGCATGATAAGATGTTTG+AGG - Chr6:50616259-50616278 MsG0680032830.01.T01:CDS 35.0%
GAGATAACTACAGTTATGTG+AGG - Chr6:50617504-50617523 MsG0680032830.01.T01:intron 35.0%
GTTATTTATAGACAGGCCTA+GGG - Chr6:50617050-50617069 MsG0680032830.01.T01:intron 35.0%
TCTCAAATTATTAGCGGTGT+CGG + Chr6:50614561-50614580 None:intergenic 35.0%
TCTCTTGCAGTCAGTTATTT+GGG + Chr6:50617488-50617507 None:intergenic 35.0%
TCTTAATGGTGTTCAGCTAA+GGG + Chr6:50616575-50616594 None:intergenic 35.0%
TTATCGCTGTCTATGAATCA+CGG + Chr6:50614671-50614690 None:intergenic 35.0%
TTATTTATAGACAGGCCTAG+GGG - Chr6:50617051-50617070 MsG0680032830.01.T01:intron 35.0%
TTCTTAATGGTGTTCAGCTA+AGG + Chr6:50616576-50616595 None:intergenic 35.0%
! AGGATTCTGAGGAATCTATA+AGG - Chr6:50616991-50617010 MsG0680032830.01.T01:intron 35.0%
! CTCCTCTTACTCTATGATTT+TGG + Chr6:50616666-50616685 None:intergenic 35.0%
! CTTTTCAGTATAGATGCAAG+TGG - Chr6:50616940-50616959 MsG0680032830.01.T01:intron 35.0%
! GGATTCTGAGGAATCTATAA+GGG - Chr6:50616992-50617011 MsG0680032830.01.T01:intron 35.0%
! TAGTAGTTCTGTTGTCTCAA+TGG - Chr6:50617657-50617676 MsG0680032830.01.T01:CDS 35.0%
!! AAGTGGATGATGATGGATTT+GGG + Chr6:50614008-50614027 None:intergenic 35.0%
!! CTCTAGAATACGAGAAAGAA+TGG - Chr6:50615829-50615848 MsG0680032830.01.T01:CDS 35.0%
!! TTATTAGTCTTCCAAACTCG+AGG + Chr6:50614339-50614358 None:intergenic 35.0%
!! TTGGGTTAGACTCTTTTCAT+GGG - Chr6:50615176-50615195 MsG0680032830.01.T01:intron 35.0%
!! TTTGATCAGTAGCTTTAGTG+TGG - Chr6:50617289-50617308 MsG0680032830.01.T01:intron 35.0%
!! TTTGGGTTAGACTCTTTTCA+TGG - Chr6:50615175-50615194 MsG0680032830.01.T01:intron 35.0%
!!! GTGGTTGATATTTTGACAAC+CGG - Chr6:50615312-50615331 MsG0680032830.01.T01:intron 35.0%
!!! TGGTGTTTTCGTTGATAGTT+AGG - Chr6:50615215-50615234 MsG0680032830.01.T01:intron 35.0%
AAAAATATCCACCACCGCAA+TGG - Chr6:50617734-50617753 MsG0680032830.01.T01:intron 40.0%
AAAATATCCACCACCGCAAT+GGG - Chr6:50617735-50617754 MsG0680032830.01.T01:intron 40.0%
AAACGAATATAGCGAATGCG+AGG + Chr6:50614415-50614434 None:intergenic 40.0%
AAGGAGAGGATAAGGGTTTA+GGG - Chr6:50617254-50617273 MsG0680032830.01.T01:intron 40.0%
AAGGGTCAAGGAAAGACAAT+GGG - Chr6:50616089-50616108 MsG0680032830.01.T01:intron 40.0%
AAGTCAATGTATCCTTTGGC+GGG - Chr6:50615109-50615128 MsG0680032830.01.T01:intron 40.0%
AATATAGGACTGGATTGTGC+TGG - Chr6:50617383-50617402 MsG0680032830.01.T01:intron 40.0%
AGAATGGAAGCGGATAATAC+AGG - Chr6:50615845-50615864 MsG0680032830.01.T01:CDS 40.0%
AGTTCTGTTGTCTCAATGGT+TGG - Chr6:50617661-50617680 MsG0680032830.01.T01:CDS 40.0%
CATGTAGGTATTTGCAGACA+TGG - Chr6:50617615-50617634 MsG0680032830.01.T01:CDS 40.0%
CCAGAAATGCAAATCATCCA+AGG + Chr6:50615675-50615694 None:intergenic 40.0%
CCGGTATGAGAAATTTGTGA+AGG - Chr6:50615331-50615350 MsG0680032830.01.T01:intron 40.0%
CGATTACAAATGGCAGAACA+TGG + Chr6:50615418-50615437 None:intergenic 40.0%
CGTTATTTATAGACAGGCCT+AGG - Chr6:50617049-50617068 MsG0680032830.01.T01:intron 40.0%
CTAACAATTAAGTCACCCCT+AGG + Chr6:50617069-50617088 None:intergenic 40.0%
CTGTCTATGAATCACGGATT+AGG + Chr6:50614665-50614684 None:intergenic 40.0%
CTTCAAAGAGCTAGGTATGA+TGG - Chr6:50617690-50617709 MsG0680032830.01.T01:intron 40.0%
GAAGTCAATGTATCCTTTGG+CGG - Chr6:50615108-50615127 MsG0680032830.01.T01:intron 40.0%
GACAATGTTCAACCAAATCC+AGG - Chr6:50617841-50617860 MsG0680032830.01.T01:intron 40.0%
GATAGGATATGAGCGAACAA+AGG - Chr6:50616721-50616740 MsG0680032830.01.T01:intron 40.0%
GGAAATGTCTTCAAAGAGCT+AGG - Chr6:50617682-50617701 MsG0680032830.01.T01:intron 40.0%
GGATGATGAACAATTCGAAC+AGG - Chr6:50617906-50617925 MsG0680032830.01.T01:CDS 40.0%
GTCAATGTCACTGTCGTATT+TGG + Chr6:50614464-50614483 None:intergenic 40.0%
GTTCCTTCTTTGGATAGCTT+CGG - Chr6:50616004-50616023 MsG0680032830.01.T01:intron 40.0%
TATCTATATTCCCATTGCGG+TGG + Chr6:50617748-50617767 None:intergenic 40.0%
TCCAAGGAAAAATCAGCCTA+AGG + Chr6:50615659-50615678 None:intergenic 40.0%
TCCATATCCAGGAAATCTTC+AGG + Chr6:50616781-50616800 None:intergenic 40.0%
TCCTGAAGATTTCCTGGATA+TGG - Chr6:50616777-50616796 MsG0680032830.01.T01:intron 40.0%
TGTCCTTGGTCCTAGAATAT+AGG - Chr6:50617368-50617387 MsG0680032830.01.T01:intron 40.0%
TTCCAAACTCGAGGATATCT+TGG + Chr6:50614330-50614349 None:intergenic 40.0%
TTCCTTCTTTGGATAGCTTC+GGG - Chr6:50616005-50616024 MsG0680032830.01.T01:intron 40.0%
TTGGTCCTAGAATATAGGAC+TGG - Chr6:50617373-50617392 MsG0680032830.01.T01:intron 40.0%
TTTATGGCGGTTCAAAATGG+TGG - Chr6:50615377-50615396 MsG0680032830.01.T01:intron 40.0%
TTTCTACTGCTGCTGATGTA+AGG + Chr6:50614040-50614059 None:intergenic 40.0%
! AAGGAAAGCGTGTAAGAATC+AGG - Chr6:50617773-50617792 MsG0680032830.01.T01:intron 40.0%
! AAGGTATTTGCTGCTGCAAA+AGG - Chr6:50614297-50614316 MsG0680032830.01.T01:CDS 40.0%
! ACAGCGTTGTCGATTACAAA+TGG + Chr6:50615428-50615447 None:intergenic 40.0%
! AGGAAAGCGTGTAAGAATCA+GGG - Chr6:50617774-50617793 MsG0680032830.01.T01:intron 40.0%
! CCTTGGATGATTTGCATTTC+TGG - Chr6:50615672-50615691 MsG0680032830.01.T01:intron 40.0%
! GTATTATGTCGTGTTGGTGT+AGG - Chr6:50614882-50614901 MsG0680032830.01.T01:intron 40.0%
! TCTTGATACCTATGTCGCTT+GGG - Chr6:50615764-50615783 MsG0680032830.01.T01:CDS 40.0%
! TTCAGCTAAGGGCTATTTCA+GGG + Chr6:50616564-50616583 None:intergenic 40.0%
!! ACCTTAGGCTGATTTTTCCT+TGG - Chr6:50615655-50615674 MsG0680032830.01.T01:intron 40.0%
!! AGTCCTATATTCTAGGACCA+AGG + Chr6:50617374-50617393 None:intergenic 40.0%
!! AGTGAAAGCATTACTGCTTG+TGG + Chr6:50614126-50614145 None:intergenic 40.0%
!! GAAGTGGATGATGATGGATT+TGG + Chr6:50614009-50614028 None:intergenic 40.0%
!! GGATGCCGATTTAAAATGCA+TGG - Chr6:50617927-50617946 MsG0680032830.01.T01:CDS 40.0%
!!! CTCTTAGTGGCTAGTCTTTT+GGG - Chr6:50615581-50615600 MsG0680032830.01.T01:intron 40.0%
!!! GCACCGACTCTTTTAATCAA+AGG + Chr6:50614938-50614957 None:intergenic 40.0%
AACAGAGGCAGAAAAGGGAT+AGG - Chr6:50616704-50616723 MsG0680032830.01.T01:intron 45.0%
ACCAAATCCAGGCTTAAGAG+AGG - Chr6:50617852-50617871 MsG0680032830.01.T01:intron 45.0%
ACTCGAGGATATCTTGGTCT+TGG + Chr6:50614324-50614343 None:intergenic 45.0%
AGATTTCCTGGATATGGAGC+AGG - Chr6:50616783-50616802 MsG0680032830.01.T01:intron 45.0%
ATGGCCGATATTTGACAACC+CGG + Chr6:50615281-50615300 None:intergenic 45.0%
CAAGGAGAGGATAAGGGTTT+AGG - Chr6:50617253-50617272 MsG0680032830.01.T01:intron 45.0%
CAAGGGTCAAGGAAAGACAA+TGG - Chr6:50616088-50616107 MsG0680032830.01.T01:intron 45.0%
CAATGTTATGAGTTCCACGC+CGG - Chr6:50615558-50615577 MsG0680032830.01.T01:intron 45.0%
CAGGATTCCTGAAGATTTCC+TGG - Chr6:50616771-50616790 MsG0680032830.01.T01:intron 45.0%
CCAAACCAAGGAGAGGATAA+GGG - Chr6:50617247-50617266 MsG0680032830.01.T01:intron 45.0%
CTAAACCCTTATCCTCTCCT+TGG + Chr6:50617255-50617274 None:intergenic 45.0%
CTATCTTCCTCTCTTAAGCC+TGG + Chr6:50617862-50617881 None:intergenic 45.0%
CTCTTGATACCTATGTCGCT+TGG - Chr6:50615763-50615782 MsG0680032830.01.T01:CDS 45.0%
CTCTTTCAACAGTGACCATG+TGG + Chr6:50615501-50615520 None:intergenic 45.0%
GACCAAGATATCCTCGAGTT+TGG - Chr6:50614325-50614344 MsG0680032830.01.T01:CDS 45.0%
GGACTTCCTCGAGAAAAACT+CGG + Chr6:50617229-50617248 None:intergenic 45.0%
GTAGGTATTTGCAGACATGG+AGG - Chr6:50617618-50617637 MsG0680032830.01.T01:CDS 45.0%
GTCTGTATCTGTGTTGTGTC+CGG + Chr6:50614529-50614548 None:intergenic 45.0%
GTGGTATGGATAGGATTCTG+AGG - Chr6:50616980-50616999 MsG0680032830.01.T01:intron 45.0%
TAAACATACGGCTCTGTCCT+TGG - Chr6:50617354-50617373 MsG0680032830.01.T01:intron 45.0%
TACTGCTGCTGATGTAAGGT+TGG + Chr6:50614036-50614055 None:intergenic 45.0%
TCCAAACCAAGGAGAGGATA+AGG - Chr6:50617246-50617265 MsG0680032830.01.T01:intron 45.0%
TCCTCTCTTAAGCCTGGATT+TGG + Chr6:50617856-50617875 None:intergenic 45.0%
TCCTTCTTTGGATAGCTTCG+GGG - Chr6:50616006-50616025 MsG0680032830.01.T01:intron 45.0%
TTGACGAAGCAGAAGAGCTT+TGG - Chr6:50616156-50616175 MsG0680032830.01.T01:CDS 45.0%
TTGTCAAATATCGGCCATGC+TGG - Chr6:50615283-50615302 MsG0680032830.01.T01:intron 45.0%
! AAAGACTAGCCACTAAGAGC+CGG + Chr6:50615580-50615599 None:intergenic 45.0%
! CAAACACCGAGTTTTTCTCG+AGG - Chr6:50617220-50617239 MsG0680032830.01.T01:intron 45.0%
! GTTCAGCTAAGGGCTATTTC+AGG + Chr6:50616565-50616584 None:intergenic 45.0%
! TCAGCTAAGGGCTATTTCAG+GGG + Chr6:50616563-50616582 None:intergenic 45.0%
!! ATGTAAGGTTGGTGTGGAAG+TGG + Chr6:50614025-50614044 None:intergenic 45.0%
!! CACATTTGTCGGTGTTGTGT+TGG - Chr6:50614723-50614742 MsG0680032830.01.T01:intron 45.0%
!! CACTGTCGTATTTGGTGTCA+CGG + Chr6:50614456-50614475 None:intergenic 45.0%
!! GAAAGCATTACTGCTTGTGG+CGG + Chr6:50614123-50614142 None:intergenic 45.0%
!! TTCTAGTTCCCAAGCGACAT+AGG + Chr6:50615775-50615794 None:intergenic 45.0%
!! TTGGGTTGGACTCTCTTCAT+CGG - Chr6:50615599-50615618 MsG0680032830.01.T01:intron 45.0%
!!! GCTCTTAGTGGCTAGTCTTT+TGG - Chr6:50615580-50615599 MsG0680032830.01.T01:intron 45.0%
!!! TAGTGGCTAGTCTTTTGGGT+TGG - Chr6:50615585-50615604 MsG0680032830.01.T01:intron 45.0%
!!! ATTTTTATGATTTTATTATA+AGG - Chr6:50614278-50614297 MsG0680032830.01.T01:CDS 5.0%
AGGAAGTCCAAACCAAGGAG+AGG - Chr6:50617240-50617259 MsG0680032830.01.T01:intron 50.0%
CCCTTATCCTCTCCTTGGTT+TGG + Chr6:50617250-50617269 None:intergenic 50.0%
CGTGTAAGAATCAGGGTGCA+AGG - Chr6:50617781-50617800 MsG0680032830.01.T01:intron 50.0%
CTATATTCCCATTGCGGTGG+TGG + Chr6:50617745-50617764 None:intergenic 50.0%
CTCTGACACAACACTGACAC+AGG + Chr6:50614608-50614627 None:intergenic 50.0%
GAGAGGATAAGGGTTTAGGG+AGG - Chr6:50617257-50617276 MsG0680032830.01.T01:intron 50.0%
GCTCTTCTGCTTCGTCAACT+CGG + Chr6:50616154-50616173 None:intergenic 50.0%
GGTGTGGAAGTGGATGATGA+TGG + Chr6:50614015-50614034 None:intergenic 50.0%
TACAACTGAAGAGTCGCGCT+CGG + Chr6:50616880-50616899 None:intergenic 50.0%
TCTCGAGGAAGTCCAAACCA+AGG - Chr6:50617235-50617254 MsG0680032830.01.T01:intron 50.0%
TGAAAGAGTGAAAGCCGTCG+TGG - Chr6:50615513-50615532 MsG0680032830.01.T01:intron 50.0%
TGGATGCTAAGCAAGGGTCA+AGG - Chr6:50616077-50616096 MsG0680032830.01.T01:intron 50.0%
! TTTAGAGCCGACATCCACGA+CGG + Chr6:50615530-50615549 None:intergenic 50.0%
!! CTGCTGATGTAAGGTTGGTG+TGG + Chr6:50614031-50614050 None:intergenic 50.0%
!! GATGTCGGCTCTAAAAGAGG+TGG - Chr6:50615535-50615554 MsG0680032830.01.T01:intron 50.0%
!! GCTGATTTCCGGCCAGTTTT+GGG + Chr6:50614086-50614105 None:intergenic 50.0%
!! GTGGATGTCGGCTCTAAAAG+AGG - Chr6:50615532-50615551 MsG0680032830.01.T01:intron 50.0%
!!! TTCCGGCCAGTTTTGGGTTT+TGG + Chr6:50614080-50614099 None:intergenic 50.0%
AGCATTACTGCTTGTGGCGG+TGG + Chr6:50614120-50614139 None:intergenic 55.0%
ATATCGGCCATGCTGGATCG+CGG - Chr6:50615290-50615309 MsG0680032830.01.T01:intron 55.0%
ATTACTGCTTGTGGCGGTGG+CGG + Chr6:50614117-50614136 None:intergenic 55.0%
CGCCAAAACCCAAAACTGGC+CGG - Chr6:50614075-50614094 MsG0680032830.01.T01:CDS 55.0%
GATATGGAGCAGGACGTGAG+TGG - Chr6:50616793-50616812 MsG0680032830.01.T01:intron 55.0%
GATTAGGCGTGTCCTGGAGT+CGG + Chr6:50614649-50614668 None:intergenic 55.0%
GCCCCGAAGCTATCCAAAGA+AGG + Chr6:50616010-50616029 None:intergenic 55.0%
GTGAAAGCCGTCGTGGATGT+CGG - Chr6:50615520-50615539 MsG0680032830.01.T01:intron 55.0%
TAGTGAAGGGATGTCCGCCA+TGG + Chr6:50615136-50615155 None:intergenic 55.0%
TCACGTCCTGCTCCATATCC+AGG + Chr6:50616792-50616811 None:intergenic 55.0%
TGCCCGCCAAAACCCAAAAC+TGG - Chr6:50614071-50614090 MsG0680032830.01.T01:CDS 55.0%
TGTATCCTTTGGCGGGACCA+TGG - Chr6:50615116-50615135 MsG0680032830.01.T01:intron 55.0%
TGTGAAGGATGCCGTCACCA+TGG - Chr6:50615346-50615365 MsG0680032830.01.T01:intron 55.0%
! GGCTATTTCAGGGGACCGAA+TGG + Chr6:50616554-50616573 None:intergenic 55.0%
!! ATCACGGATTAGGCGTGTCC+TGG + Chr6:50614655-50614674 None:intergenic 55.0%
!! GGCTGATTTCCGGCCAGTTT+TGG + Chr6:50614087-50614106 None:intergenic 55.0%
!!! CGGCCAGTTTTGGGTTTTGG+CGG + Chr6:50614077-50614096 None:intergenic 55.0%
!!! GGCCAGTTTTGGGTTTTGGC+GGG + Chr6:50614076-50614095 None:intergenic 55.0%
ATCCTTTGGCGGGACCATGG+CGG - Chr6:50615119-50615138 MsG0680032830.01.T01:intron 60.0%
GCAGGACGTGAGTGGAATGG+AGG - Chr6:50616801-50616820 MsG0680032830.01.T01:intron 60.0%
GGAGCAGGACGTGAGTGGAA+TGG - Chr6:50616798-50616817 MsG0680032830.01.T01:intron 60.0%
TCAACCACCGCGATCCAGCA+TGG + Chr6:50615300-50615319 None:intergenic 60.0%
TCCTGGAGTCGGACACACGT+CGG + Chr6:50614638-50614657 None:intergenic 60.0%
!! AGTTCCACGCCGGCTCTTAG+TGG - Chr6:50615568-50615587 MsG0680032830.01.T01:intron 60.0%
ACCGACGTGTGTCCGACTCC+AGG - Chr6:50614634-50614653 MsG0680032830.01.T01:intron 65.0%
CTAGCCACTAAGAGCCGGCG+TGG + Chr6:50615575-50615594 None:intergenic 65.0%
! CGGTGGCGGTGGCTGATTTC+CGG + Chr6:50614097-50614116 None:intergenic 65.0%
GTCCGCCATGGTCCCGCCAA+AGG + Chr6:50615124-50615143 None:intergenic 70.0%
TCGGCCATGCTGGATCGCGG+TGG - Chr6:50615293-50615312 MsG0680032830.01.T01:intron 70.0%
! ACTGCTTGTGGCGGTGGCGG+TGG + Chr6:50614114-50614133 None:intergenic 70.0%
! GCTTGTGGCGGTGGCGGTGG+CGG + Chr6:50614111-50614130 None:intergenic 75.0%
!! TGTGGCGGTGGCGGTGGCGG+TGG + Chr6:50614108-50614127 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr6 gene 50613993 50618008 50613993 ID=MsG0680032830.01;Name=MsG0680032830.01
Chr6 mRNA 50613993 50618008 50613993 ID=MsG0680032830.01.T01;Parent=MsG0680032830.01;Name=MsG0680032830.01.T01;_AED=0.49;_eAED=0.51;_QI=0|0|0|1|0.75|0.6|5|0|321
Chr6 exon 50617870 50618008 50617870 ID=MsG0680032830.01.T01:exon:10404;Parent=MsG0680032830.01.T01
Chr6 exon 50617600 50617682 50617600 ID=MsG0680032830.01.T01:exon:10405;Parent=MsG0680032830.01.T01
Chr6 exon 50616135 50616278 50616135 ID=MsG0680032830.01.T01:exon:10406;Parent=MsG0680032830.01.T01
Chr6 exon 50615721 50615933 50615721 ID=MsG0680032830.01.T01:exon:10407;Parent=MsG0680032830.01.T01
Chr6 exon 50613993 50614379 50613993 ID=MsG0680032830.01.T01:exon:10408;Parent=MsG0680032830.01.T01
Chr6 CDS 50617870 50618008 50617870 ID=MsG0680032830.01.T01:cds;Parent=MsG0680032830.01.T01
Chr6 CDS 50617600 50617682 50617600 ID=MsG0680032830.01.T01:cds;Parent=MsG0680032830.01.T01
Chr6 CDS 50616135 50616278 50616135 ID=MsG0680032830.01.T01:cds;Parent=MsG0680032830.01.T01
Chr6 CDS 50615721 50615933 50615721 ID=MsG0680032830.01.T01:cds;Parent=MsG0680032830.01.T01
Chr6 CDS 50613993 50614379 50613993 ID=MsG0680032830.01.T01:cds;Parent=MsG0680032830.01.T01
Gene Sequence

>MsG0680032830.01.T01

ATGCATTACAAACCCAAATCCATCATCATCCACTTCCACACCAACCTTACATCAGCAGCAGTAGAAATCGCACTCAACTGCCCGCCAAAACCCAAAACTGGCCGGAAATCAGCCACCGCCACCGCCACCGCCACAAGCAGTCCAAGACCAAGATATCCTCGAGTTTGGAAGACTAATAAAAAAATTGGAACTATTTCTAAGGCTGCTAAGCTTGTTCAATCTATTAAAGAACTTTCAAATGTCAAAGAAGAAGTTTATGGAGCTCTTGATACCTATGTCGCTTGGGAACTAGAATTTCCTATAATTACAGTGAAAAAGGTACTCAAGACTCTAGAATACGAGAAAGAATGGAAGCGGATAATACAGGTAACAAAATGGATGCTAAGCAAGGGTCAAGGAAAGACAATGGGAAGCTATTTTACACTACTTAATGCTTTAGCAGAGGATGACCGAGTTGACGAAGCAGAAGAGCTTTGGACAAAGCTATTAATGCAGTACACGGAAAGCTTGCCACGTAGATTCTTTGATAAAATGATATCTATCTACTGTAAAAGAGGCTTGCATGATAAGATGTTTGAGGTATTTGCAGACATGGAGGAGCTTAGTGTTAAACCTAGTAGTTCTGTTGTCTCAATGGTTGGAAATGTCTTCAAAGAGCTAGGTATGATGGATAAATACGAGAAGTTACATCAAAAATATCCACCACCGCAATGGGAATATAGATACATCAAAGGAAAGCGTGTAAGAATCAGGGTGCAAGGTCAGCCTAATAAAGTCGATAGATACGTAAGAAAGCATGACAATGTTCAACCAAATCCAGGCTTAAGAGAGGAAGATAGTTCAGAAGAGACTTCAGAGTTAACGGATGATGAACAATTCGAACAGGATGCCGATTTAAAATGCATGGAAACCAAACAAATTTCAAATGATTCATCTGAGTTTATGGAACCAAATTTAGAAGTATAA

Protein sequence

>MsG0680032830.01.T01

MHYKPKSIIIHFHTNLTSAAVEIALNCPPKPKTGRKSATATATATSSPRPRYPRVWKTNKKIGTISKAAKLVQSIKELSNVKEEVYGALDTYVAWELEFPIITVKKVLKTLEYEKEWKRIIQVTKWMLSKGQGKTMGSYFTLLNALAEDDRVDEAEELWTKLLMQYTESLPRRFFDKMISIYCKRGLHDKMFEVFADMEELSVKPSSSVVSMVGNVFKELGMMDKYEKLHQKYPPPQWEYRYIKGKRVRIRVQGQPNKVDRYVRKHDNVQPNPGLREEDSSEETSELTDDEQFEQDADLKCMETKQISNDSSEFMEPNLEV*