AlfalfaGEDB | MsG0680030858.01

M. sativa cultivar ZhongmuNo.1 / MsG0680030858.01

KEGG: -
GO: -
PFAM: PF12204

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680030858.01.T01	XP_003618571.1	95.533	403	10	2	14	413	1	398	0	792

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680030858.01.T01	Q2HWC9	95.533	403	10	2	14	413	1	398	0.0	792

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047883.01	MsG0680030858.01	0.838996	2.062705e-57	2.810176e-54
MsG0080047884.01	MsG0680030858.01	0.838958	2.110734e-57	2.872156e-54
MsG0080047885.01	MsG0680030858.01	0.834121	3.599395e-56	4.230946e-53
MsG0080047955.01	MsG0680030858.01	0.820665	6.083803e-53	4.843828e-50
MsG0080047989.01	MsG0680030858.01	0.828075	1.099992e-54	1.081854e-51
MsG0080048065.01	MsG0680030858.01	0.813915	2.009917e-51	1.329596e-48
MsG0080048068.01	MsG0680030858.01	0.824153	9.419934e-54	8.276292e-51
MsG0080048191.01	MsG0680030858.01	0.823966	1.041979e-53	9.106932e-51
MsG0080048528.01	MsG0680030858.01	0.869713	2.519409e-66	9.547654e-63
MsG0080048614.01	MsG0680030858.01	0.805729	1.159984e-49	6.183350e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680030858.01.T01	MTR_6g013150	95.533	403	10	2	14	413	1	398	0.0	792

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680030858.01.T01	AT3G29185	71.429	343	95	2	74	413	54	396	0.0	521
MsG0680030858.01.T01	AT3G29185	72.727	286	75	2	131	413	49	334	2.91e-153	437

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Find 91 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGTAAATGAGTATTACA+TGG	0.634242	6:+10574618	None:intergenic
AACAAGAGAAGGTCGGCGAG+AGG	0.550515	6:+10576294	None:intergenic
AACCAATCATATTCAATCAA+TGG	0.470820	6:+10574582	None:intergenic
AAGCTTTCTGTTAGCTCTTA+TGG	0.120996	6:-10578924	MsG0680030858.01.T01:CDS
AAGTTGAAATTGGAGAGTTT+TGG	0.403728	6:+10579406	None:intergenic
AATAAAATAAGTAGATGAGA+CGG	0.608181	6:+10574695	None:intergenic
AATAGGATTACACCATTTCT+TGG	0.307951	6:-10575913	MsG0680030858.01.T01:CDS
AATGCAAATGCTTTCTCGGA+TGG	0.491967	6:+10576907	None:intergenic
AATGGATGAAAATTATGCAA+AGG	0.605211	6:+10574600	None:intergenic
AATTTAGTCACATTTGATGG+AGG	0.624019	6:-10574879	MsG0680030858.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATAGGATTACACCATTTCT+TGG	-	Chr6:10577994-10578013	MsG0680030858.01.T01:intron	30.0%
AATTAACACAATCAAGAGCT+TGG	+	Chr6:10576365-10576384	None:intergenic	30.0%
AATTTAGTCACATTTGATGG+AGG	-	Chr6:10579028-10579047	MsG0680030858.01.T01:intron	30.0%
AGATTGTGAGGCAAATTTAA+TGG	+	Chr6:10575894-10575913	None:intergenic	30.0%
AGCTTCATCAACCTTAATAT+CGG	-	Chr6:10574666-10574685	MsG0680030858.01.T01:exon	30.0%
ATACATTTGAACACATTTGG+AGG	-	Chr6:10578507-10578526	MsG0680030858.01.T01:intron	30.0%
ATAGCGTTTGAATTTGATGA+TGG	+	Chr6:10574558-10574577	None:intergenic	30.0%
ATTAACCATCAAAATTGCTG+TGG	-	Chr6:10578688-10578707	MsG0680030858.01.T01:intron	30.0%
CTTAATATCGGAAAATGGAA+CGG	-	Chr6:10574678-10574697	MsG0680030858.01.T01:exon	30.0%
CTTGTCAACAGTAAACATAT+TGG	+	Chr6:10576836-10576855	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	10574417	10579512	10574417	ID=MsG0680030858.01;Name=MsG0680030858.01
Chr6	mRNA	10574417	10579512	10574417	ID=MsG0680030858.01.T01;Parent=MsG0680030858.01;Name=MsG0680030858.01.T01;_AED=0.44;_eAED=0.44;_QI=0\|1\|1\|1\|0.66\|0.71\|7\|263\|413
Chr6	exon	10574417	10574970	10574417	ID=MsG0680030858.01.T01:exon:8087;Parent=MsG0680030858.01.T01
Chr6	exon	10575801	10575944	10575801	ID=MsG0680030858.01.T01:exon:8086;Parent=MsG0680030858.01.T01
Chr6	exon	10576150	10576330	10576150	ID=MsG0680030858.01.T01:exon:8085;Parent=MsG0680030858.01.T01
Chr6	exon	10576823	10576941	10576823	ID=MsG0680030858.01.T01:exon:8084;Parent=MsG0680030858.01.T01
Chr6	exon	10577065	10577182	10577065	ID=MsG0680030858.01.T01:exon:8083;Parent=MsG0680030858.01.T01
Chr6	exon	10578894	10578988	10578894	ID=MsG0680030858.01.T01:exon:8082;Parent=MsG0680030858.01.T01
Chr6	exon	10579219	10579512	10579219	ID=MsG0680030858.01.T01:exon:8081;Parent=MsG0680030858.01.T01
Chr6	CDS	10579219	10579512	10579219	ID=MsG0680030858.01.T01:cds;Parent=MsG0680030858.01.T01
Chr6	CDS	10578894	10578988	10578894	ID=MsG0680030858.01.T01:cds;Parent=MsG0680030858.01.T01
Chr6	CDS	10577065	10577182	10577065	ID=MsG0680030858.01.T01:cds;Parent=MsG0680030858.01.T01
Chr6	CDS	10576823	10576941	10576823	ID=MsG0680030858.01.T01:cds;Parent=MsG0680030858.01.T01
Chr6	CDS	10576150	10576330	10576150	ID=MsG0680030858.01.T01:cds;Parent=MsG0680030858.01.T01
Chr6	CDS	10575801	10575944	10575801	ID=MsG0680030858.01.T01:cds;Parent=MsG0680030858.01.T01
Chr6	CDS	10574680	10574970	10574680	ID=MsG0680030858.01.T01:cds;Parent=MsG0680030858.01.T01
Chr6	three_prime_UTR	10574417	10574679	10574417	ID=MsG0680030858.01.T01:three_prime_utr;Parent=MsG0680030858.01.T01

Gene Sequence

>MsG0680030858.01.T01

AAGGTAGAACAGTTGCAACAGTTGAGTTGTGTTGCGACAATGGCTTCTTCACTTCATTGCTCTGTTTCACTTCCTTCATCACTTCCAAAACTCTCCAATTTCAACTTCAACACCAACAACAAATTCTTCTCATTCAACCCATCATCAAATTCAAACGCTATCTCTACAATCAAATGTTCAGCTTCTTCTTTTTCATCTTTCTCTTCAACATCACTTGATGAAACTGCTATGAGCATTGAAAATCTACGTAGCTTCATCAACCTTAATATCGGAAAATGGAACGGTTCTTTCTATCAATTTGATGCTGGCGGGAATCTGTTGCAACGAGTGAGTACTAAGCTTTCTGTTAGCTCTTATGGGGAAGATGAACTGATGAGTCTCATTCAATCGCTGTACATTAAACAACCTTCATCAAACACTTCAGTTTCTGGAGATGACGATGATGCGGAATGGGCAGAGTACAAAATTAAAGAAACCAATATGTTTACTGTTGACAAGTACCAACAAATAGGCTTTTTCCCATCCGAGAAAGCATTTGCATTGAGGTATCAAACAGCTGGTATGTTGGAAACTGTATTACGGCAGGGGGTTCTTGGAGAAGATGACATTGGTGAAGAATCACCTAGAAATCTCAAACTTCCCTCTCGCCGACCTTCTCTTGTTTGTGAGAATTGCCTGTACTCTTTACAAAGAGATATGCGAGCAAGAGCCTTTCACATTTTGGAGCCAAAAGGCACTGTTGATATGCTTATCATCTTCCTAGAGGAACGAAGTGAGGGGTCTCCTCCTCTACTTGACAGTGCTGGGGACACAGAGAATAGGATTACACCATTTCTTGGTAAATGGAAAGGTCGTTCCGTTACAAACCGAAGTGGTGTCTATGGGTCTACGATTTCTGAAGCAGATACAGTTGTGTTACATGAGATGAATGACAATGGCCAACTTATTCAGGATGTTACTTGTACATCTGATGAGGCAAATGTTACAACCAATGTGCATTGGACTGGCACAATATCAGACAATTTAGTCACATTTGATGGAGGTTATCAAATGATTCTATTACCTGGTGGCATGTACATGGGATGTCCTTGTGATGTTGCAAAAAGTGTGGCACAATCAAAATCTTTCCATTTGGAGTTCTGTTGGTTAGAGACACCTGACAAGAGGCAAAGACTGGTTCGCACGTATGATGTCGAAGGCTTGGCCGTCTCATCTACTTATTTTATTGAGACAAAATTGTGA

Protein sequence

>MsG0680030858.01.T01

KVEQLQQLSCVATMASSLHCSVSLPSSLPKLSNFNFNTNNKFFSFNPSSNSNAISTIKCSASSFSSFSSTSLDETAMSIENLRSFINLNIGKWNGSFYQFDAGGNLLQRVSTKLSVSSYGEDELMSLIQSLYIKQPSSNTSVSGDDDDAEWAEYKIKETNMFTVDKYQQIGFFPSEKAFALRYQTAGMLETVLRQGVLGEDDIGEESPRNLKLPSRRPSLVCENCLYSLQRDMRARAFHILEPKGTVDMLIIFLEERSEGSPPLLDSAGDTENRITPFLGKWKGRSVTNRSGVYGSTISEADTVVLHEMNDNGQLIQDVTCTSDEANVTTNVHWTGTISDNLVTFDGGYQMILLPGGMYMGCPCDVAKSVAQSKSFHLEFCWLETPDKRQRLVRTYDVEGLAVSSTYFIETKL*