AlfalfaGEDB | MsG0780036890.01

M. sativa cultivar ZhongmuNo.1 / MsG0780036890.01

KEGG: -
GO: GO:0005515
PFAM: PF08263 PF13855

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036890.01.T01	AES78025.1	92.718	206	15	21	226	22	227	2.14E-136	392
MsG0780036890.01.T02	AES78025.1	92.718	206	15	15	220	22	227	3.18E-136	391
MsG0780036890.01.T04	XP_003621807.2	92.105	114	9	1	114	1	114	1.49E-67	209

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036890.01.T01	Q9M5J9	43.787	169	92	3	32	199	24	190	2.11E-35	130
MsG0780036890.01.T02	Q9M5J9	43.787	169	92	3	26	193	24	190	2.48E-35	130
MsG0780036890.01.T04	Q9ZVR7	46.429	112	57	2	4	113	535	645	1.03E-20	89

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036890.01.T01	G7KVQ8	92.718	206	15	21	226	22	227	1.02e-136	392
MsG0780036890.01.T02	G7KVQ8	92.718	206	15	15	220	22	227	1.52e-136	391
MsG0780036890.01.T04	G7KVQ8	92.105	114	9	1	114	114	227	4.19e-66	208

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048633.01	MsG0780036890.01	0.822740	2.014952e-53	1.701179e-50
MsG0080048652.01	MsG0780036890.01	0.823741	1.176451e-53	1.021811e-50
MsG0080048889.01	MsG0780036890.01	0.837726	4.385198e-57	5.747569e-54
MsG0080048919.01	MsG0780036890.01	-0.822570	2.206805e-53	1.854263e-50
MsG0080048948.01	MsG0780036890.01	-0.820009	8.600556e-53	6.724982e-50
MsG0080049038.01	MsG0780036890.01	-0.803506	3.374263e-49	1.698682e-46
MsG0080049066.01	MsG0780036890.01	-0.806200	9.231349e-50	4.980410e-47
MsG0180001358.01	MsG0780036890.01	0.808406	3.145959e-50	1.797336e-47
MsG0180002808.01	MsG0780036890.01	0.838905	2.177773e-57	2.958576e-54
MsG0180003484.01	MsG0780036890.01	0.818673	1.733668e-52	1.306164e-49

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036890.01.T01	MTR_7g023630	92.718	206	15	0	21	226	22	227	2.59e-140	392
MsG0780036890.01.T01	MTR_7g023590	89.447	199	21	0	21	219	22	220	8.67e-132	370
MsG0780036890.01.T01	MTR_7g023670	85.572	201	27	2	21	219	22	222	1.67e-123	349
MsG0780036890.01.T01	MTR_7g023690	85.500	200	27	2	21	218	22	221	2.47e-122	346
MsG0780036890.01.T01	MTR_3g437820	67.805	205	60	2	21	219	22	226	9.74e-85	251
MsG0780036890.01.T01	MTR_7g006870	44.390	205	105	4	22	219	27	229	2.58e-47	156
MsG0780036890.01.T01	MTR_7g023730	40.000	170	99	2	33	201	33	200	1.13e-34	127
MsG0780036890.01.T01	MTR_7g023730	48.000	150	56	2	92	220	212	360	2.77e-32	120
MsG0780036890.01.T01	MTR_7g033445	39.247	186	107	3	22	203	18	201	9.93e-34	124
MsG0780036890.01.T01	MTR_7g033445	38.043	184	58	4	91	219	162	344	5.21e-21	90.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036890.01.T01	AT5G06860	43.787	169	92	3	32	199	24	190	2.15e-36	130
MsG0780036890.01.T01	AT5G06870	37.209	215	99	7	32	215	24	233	2.97e-29	112
MsG0780036890.01.T01	AT3G12145	37.870	169	99	4	33	200	24	187	5.19e-28	108
MsG0780036890.01.T01	AT5G21090	40.000	155	88	4	41	194	34	184	9.20e-24	95.1
MsG0780036890.01.T01	AT2G26380	34.104	173	106	3	33	199	29	199	2.42e-23	97.8
MsG0780036890.01.T01	AT2G26380	38.889	108	64	2	88	194	209	315	9.59e-13	67.0
MsG0780036890.01.T01	AT2G26380	34.959	123	77	3	79	200	153	273	3.69e-12	65.5
MsG0780036890.01.T01	AT3G12610	33.714	175	101	4	33	193	27	200	2.58e-23	96.7
MsG0780036890.01.T01	AT3G12610	32.768	177	68	3	90	216	194	369	1.00e-19	86.7
MsG0780036890.01.T01	AT3G12610	40.566	106	62	1	91	196	171	275	2.23e-14	71.6

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Find 80 sgRNAs with CRISPR-Local

Find 86 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCTGCTGGAAGTGTAC+CGG	0.578250	7:-15822677	None:intergenic
AAACTGTGAAAGAGACGGTA+GGG	0.614056	7:-15822923	None:intergenic
AAAGAGACGGTAGGGTGCCG+AGG	0.570993	7:-15822915	None:intergenic
AACACCGGACAGCTTGTTGT+TGG	0.466842	7:-15822881	None:intergenic
AAGAGACGGTAGGGTGCCGA+GGG	0.641460	7:-15822914	None:intergenic
AAGTAGTGGATGAAAAGAAG+AGG	0.574416	7:-15822445	None:intergenic
AATGAGAGCATGCTAAGATA+AGG	0.508287	7:-15822709	None:intergenic
ACAATACAGAATGTTGTGAC+TGG	0.560322	7:+15822581	MsG0780036890.01.T01:CDS
ACATTAAACTGTGAAAGAGA+CGG	0.663168	7:-15822928	None:intergenic
ACCGTCGTCACCATCAGCCG+TGG	0.605709	7:+15822643	MsG0780036890.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACATTAAACTGTGAAAGAGA+CGG	-	Chr7:15822931-15822950	None:intergenic	30.0%
ACTCAAAAGACTAGAAAATC+TGG	+	Chr7:15822780-15822799	MsG0780036890.01.T01:CDS	30.0%
ACAATACAGAATGTTGTGAC+TGG	+	Chr7:15822581-15822600	MsG0780036890.01.T01:CDS	35.0%
AGTATGAGAAACATGTTTGG+AGG	-	Chr7:15822413-15822432	None:intergenic	35.0%
CTGAGTATGAGAAACATGTT+TGG	-	Chr7:15822416-15822435	None:intergenic	35.0%
TTATCTTAGCATGCTCTCAT+TGG	+	Chr7:15822711-15822730	MsG0780036890.01.T01:CDS	35.0%
TTCAATTTGCCAAGAAAGGA+GGG	-	Chr7:15822838-15822857	None:intergenic	35.0%
AAACTGTGAAAGAGACGGTA+GGG	-	Chr7:15822926-15822945	None:intergenic	40.0%
AGACTAGAAAATCTGGACCT+TGG	+	Chr7:15822787-15822806	MsG0780036890.01.T01:CDS	40.0%
CTTCAATTTGCCAAGAAAGG+AGG	-	Chr7:15822839-15822858	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	15822401	15823083	15822401	ID=MsG0780036890.01;Name=MsG0780036890.01
Chr7	mRNA	15822403	15823083	15822403	ID=MsG0780036890.01.T01;Parent=MsG0780036890.01;Name=MsG0780036890.01.T01;_AED=0.15;_eAED=0.15;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|226
Chr7	exon	15822403	15823083	15822403	ID=MsG0780036890.01.T01:exon:2985;Parent=MsG0780036890.01.T01
Chr7	CDS	15822403	15823083	15822403	ID=MsG0780036890.01.T01:cds;Parent=MsG0780036890.01.T01
Chr7	mRNA	15822421	15823083	15822421	ID=MsG0780036890.01.T02;Parent=MsG0780036890.01;Name=MsG0780036890.01.T02;_AED=0.16;_eAED=0.16;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|220
Chr7	exon	15822421	15823083	15822421	ID=MsG0780036890.01.T02:exon:2986;Parent=MsG0780036890.01.T02
Chr7	CDS	15822421	15823083	15822421	ID=MsG0780036890.01.T02:cds;Parent=MsG0780036890.01.T02
Chr7	mRNA	15822401	15822751	15822401	ID=MsG0780036890.01.T03;Parent=MsG0780036890.01;Name=MsG0780036890.01.T03;_AED=0.32;_eAED=0.32;_QI=0\|-1\|0\|1\|-1\|0\|1\|0\|116
Chr7	exon	15822401	15822751	15822401	ID=MsG0780036890.01.T03:exon:2987;Parent=MsG0780036890.01.T03
Chr7	CDS	15822401	15822751	15822401	ID=MsG0780036890.01.T03:cds;Parent=MsG0780036890.01.T03
Chr7	mRNA	15822739	15823083	15822739	ID=MsG0780036890.01.T04;Parent=MsG0780036890.01;Name=MsG0780036890.01.T04;_AED=0.32;_eAED=0.32;_QI=0\|-1\|0\|1\|-1\|0\|1\|0\|114
Chr7	exon	15822739	15823083	15822739	ID=MsG0780036890.01.T04:exon:2988;Parent=MsG0780036890.01.T04
Chr7	CDS	15822739	15823083	15822739	ID=MsG0780036890.01.T04:cds;Parent=MsG0780036890.01.T04
Chr7	mRNA	15822947	15822991	15822947	ID=MsG0780036890.01.T05;Parent=MsG0780036890.01;Name=MsG0780036890.01.T05;_AED=0.48;_eAED=0.48;_QI=0\|-1\|0\|1\|-1\|0\|1\|0\|14
Chr7	exon	15822947	15822991	15822947	ID=MsG0780036890.01.T05:exon:2989;Parent=MsG0780036890.01.T05
Chr7	CDS	15822947	15822991	15822947	ID=MsG0780036890.01.T05:cds;Parent=MsG0780036890.01.T05

Gene Sequence

>MsG0780036890.01.T05

ATGTTAGCTTTAACCAGCTGTGTGGTGCGATCCCTACTGGGTTGA

>MsG0780036890.01.T04

ATGCCTGAAGTAACTGGGCCAATCCCTAACTCTTTCAGCAAACTCAAAAGACTAGAAAATCTGGACCTTGGCTCCAACAGCCTTAGTGGGCCAATCCCCTCCTTTCTTGGCAAATTGAAGCGCCTCCAGGAGGTTGATTTGTCCAACAACAAGCTGTCCGGTGTTATTCCAGCGTCCCTCGGCACCCTACCGTCTCTTTCACAGTTTAATGTTAGCTTTAACCAGCTGTGTGGTGCGATCCCTACTGGGTTGAGCAAGTTTGCAAAGAGTTCGTTTGATCATAATAAATGCCTATGTGATGCTCCTTTAGCACCATGCAAGGGAGGCATAGCTAGCAGCAAGTAA

>MsG0780036890.01.T02

GTTTCTCATACTCAGCTTAACACTCCTCTTCTTTTCATCCACTACTTCTCCAAATCAAACGCTGATGATGACTTCTTTTGCAACGCCGACGACAAAGCCACCCTCCACAAAATCAGAGACCATTTTGGTGGCCCTAACGGTCGTCTTGACGACTGGGACAACAATACAGAATGTTGTGACTGGAACTTCGTCGGTTGCGGCAAACCGTATCCTGGCCGAGTCACCGTCGTCACCATCAGCCGTGGCTGGGGTCTGTCCGGTACACTTCCAGCAGAGTTTGGCGACCTCCCTTATCTTAGCATGCTCTCATTGGCCGAAATGCCTGAAGTAACTGGGCCAATCCCTAACTCTTTCAGCAAACTCAAAAGACTAGAAAATCTGGACCTTGGCTCCAACAGCCTTAGTGGGCCAATCCCCTCCTTTCTTGGCAAATTGAAGCGCCTCCAGGAGGTTGATTTGTCCAACAACAAGCTGTCCGGTGTTATTCCAGCGTCCCTCGGCACCCTACCGTCTCTTTCACAGTTTAATGTTAGCTTTAACCAGCTGTGTGGTGCGATCCCTACTGGGTTGAGCAAGTTTGCAAAGAGTTCGTTTGATCATAATAAATGCCTATGTGATGCTCCTTTAGCACCATGCAAGGGAGGCATAGCTAGCAGCAAGTAA

>MsG0780036890.01.T03

ATGAAGACTCCTCCAAACATGTTTCTCATACTCAGCTTAACACTCCTCTTCTTTTCATCCACTACTTCTCCAAATCAAACGCTGATGATGACTTCTTTTGCAACGCCGACGACAAAGCCACCCTCCACAAAATCAGAGACCATTTTGGTGGCCCTAACGGTCGTCTTGACGACTGGGACAACAATACAGAATGTTGTGACTGGAACTTCGTCGGTTGCGGCAAACCGTATCCTGGCCGAGTCACCGTCGTCACCATCAGCCGTGGCTGGGGTCTGTCCGGTACACTTCCAGCAGAGTTTGGCGACCTCCCTTATCTTAGCATGCTCTCATTGGCCGAAATGCCTGAAGTAA

>MsG0780036890.01.T01

GAAGACTCCTCCAAACATGTTTCTCATACTCAGCTTAACACTCCTCTTCTTTTCATCCACTACTTCTCCAAATCAAACGCTGATGATGACTTCTTTTGCAACGCCGACGACAAAGCCACCCTCCACAAAATCAGAGACCATTTTGGTGGCCCTAACGGTCGTCTTGACGACTGGGACAACAATACAGAATGTTGTGACTGGAACTTCGTCGGTTGCGGCAAACCGTATCCTGGCCGAGTCACCGTCGTCACCATCAGCCGTGGCTGGGGTCTGTCCGGTACACTTCCAGCAGAGTTTGGCGACCTCCCTTATCTTAGCATGCTCTCATTGGCCGAAATGCCTGAAGTAACTGGGCCAATCCCTAACTCTTTCAGCAAACTCAAAAGACTAGAAAATCTGGACCTTGGCTCCAACAGCCTTAGTGGGCCAATCCCCTCCTTTCTTGGCAAATTGAAGCGCCTCCAGGAGGTTGATTTGTCCAACAACAAGCTGTCCGGTGTTATTCCAGCGTCCCTCGGCACCCTACCGTCTCTTTCACAGTTTAATGTTAGCTTTAACCAGCTGTGTGGTGCGATCCCTACTGGGTTGAGCAAGTTTGCAAAGAGTTCGTTTGATCATAATAAATGCCTATGTGATGCTCCTTTAGCACCATGCAAGGGAGGCATAGCTAGCAGCAAGTAA

Protein sequence

>MsG0780036890.01.T05

MLALTSCVVRSLLG*

>MsG0780036890.01.T04

MPEVTGPIPNSFSKLKRLENLDLGSNSLSGPIPSFLGKLKRLQEVDLSNNKLSGVIPASLGTLPSLSQFNVSFNQLCGAIPTGLSKFAKSSFDHNKCLCDAPLAPCKGGIASSK*

>MsG0780036890.01.T02

VSHTQLNTPLLFIHYFSKSNADDDFFCNADDKATLHKIRDHFGGPNGRLDDWDNNTECCDWNFVGCGKPYPGRVTVVTISRGWGLSGTLPAEFGDLPYLSMLSLAEMPEVTGPIPNSFSKLKRLENLDLGSNSLSGPIPSFLGKLKRLQEVDLSNNKLSGVIPASLGTLPSLSQFNVSFNQLCGAIPTGLSKFAKSSFDHNKCLCDAPLAPCKGGIASSK*

>MsG0780036890.01.T03

MKTPPNMFLILSLTLLFFSSTTSPNQTLMMTSFATPTTKPPSTKSETILVALTVVLTTGTTIQNVVTGTSSVAANRILAESPSSPSAVAGVCPVHFQQSLATSLILACSHWPKCLK*

>MsG0780036890.01.T01

EDSSKHVSHTQLNTPLLFIHYFSKSNADDDFFCNADDKATLHKIRDHFGGPNGRLDDWDNNTECCDWNFVGCGKPYPGRVTVVTISRGWGLSGTLPAEFGDLPYLSMLSLAEMPEVTGPIPNSFSKLKRLENLDLGSNSLSGPIPSFLGKLKRLQEVDLSNNKLSGVIPASLGTLPSLSQFNVSFNQLCGAIPTGLSKFAKSSFDHNKCLCDAPLAPCKGGIASSK*