AlfalfaGEDB | MsG0780039121.01

M. sativa cultivar ZhongmuNo.1 / MsG0780039121.01

KEGG: -
GO: GO:0005515
PFAM: PF00560 PF08263 PF13516 PF13855

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039121.01.T01	XP_024625231.1	79.731	1115	165	8	14	1124	16	1073	0	1647

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039121.01.T01	Q9C6A6	36.084	909	503	20	250	1105	138	1021	4.42E-134	437

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039121.01.T01	A0A396GZ39	76.182	1121	249	8	14	1124	16	1128	0.0	1562

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0380015735.01	MsG0780039121.01	0.801474	8.852311e-49	4.231411e-46
MsG0780039121.01	MsG0780039135.01	0.808138	3.588056e-50	2.035476e-47

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PPI

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Gene1	Gene2	Type
MsG0280008038.01	MsG0780039121.01	PPI
MsG0580029013.01	MsG0780039121.01	PPI
MsG0580029480.01	MsG0780039121.01	PPI
MsG0580029936.01	MsG0780039121.01	PPI
MsG0580029936.01	MsG0780039121.01	PPI
MsG0680031523.01	MsG0780039121.01	PPI
MsG0680031523.01	MsG0780039121.01	PPI
MsG0680031523.01	MsG0780039121.01	PPI
MsG0680031523.01	MsG0780039121.01	PPI
MsG0680034379.01	MsG0780039121.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039121.01.T01	MTR_7g066620	77.076	855	140	6	228	1079	20	821	0.0	1248
MsG0780039121.01.T01	MTR_7g066620	25.532	752	451	22	66	751	86	794	3.42e-23	107
MsG0780039121.01.T01	MTR_7g066590	76.695	811	158	6	337	1124	1	803	0.0	1216
MsG0780039121.01.T01	MTR_7g066590	25.169	739	425	26	112	744	1	717	1.10e-19	95.5
MsG0780039121.01.T01	MTR_4g015930	32.657	1182	542	33	8	1113	19	1022	2.34e-138	447
MsG0780039121.01.T01	MTR_4g015930	32.765	1172	536	32	8	1105	19	1012	2.45e-138	444
MsG0780039121.01.T01	MTR_4g015930	32.765	1172	536	32	8	1105	19	1012	4.88e-138	444
MsG0780039121.01.T01	MTR_4g016850	35.335	866	462	21	292	1105	98	917	5.91e-129	418
MsG0780039121.01.T01	MTR_4g016850	27.356	870	467	30	8	769	19	831	5.63e-43	171
MsG0780039121.01.T01	MTR_4g015930	36.925	826	429	19	327	1105	12	792	2.56e-128	412

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039121.01.T01	AT1G74170	36.393	915	492	21	250	1105	70	953	7.38e-136	437
MsG0780039121.01.T01	AT1G74170	26.014	888	476	26	41	768	2	868	1.77e-36	150
MsG0780039121.01.T01	AT1G74170	36.084	909	503	20	250	1105	138	1021	4.51e-135	437
MsG0780039121.01.T01	AT1G74170	26.152	933	490	28	14	768	25	936	1.91e-43	172
MsG0780039121.01.T01	AT1G07390	30.975	1159	636	28	25	1121	26	1082	1.06e-129	423
MsG0780039121.01.T01	AT5G49290	36.084	909	500	21	224	1105	39	893	5.77e-128	414
MsG0780039121.01.T01	AT5G49290	27.219	845	456	32	16	768	4	781	2.15e-39	159
MsG0780039121.01.T01	AT5G49290	36.084	909	500	21	224	1105	67	921	2.08e-127	413
MsG0780039121.01.T01	AT5G49290	27.115	863	453	32	16	768	13	809	1.28e-39	160
MsG0780039121.01.T01	AT5G49290	36.084	909	500	21	224	1105	67	921	2.08e-127	413

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Find 225 sgRNAs with CRISPR-Local

Find 532 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGTGTGAATGAAATA+GGG	0.475400	7:+58258219	None:intergenic
AAACCATTTGGTAATGTAGC+AGG	0.470577	7:+58256541	None:intergenic
AAACCTCTAAAGATCTCAAG+TGG	0.599863	7:+58257739	None:intergenic
AAAGGGACAATTCTTAATGG+AGG	0.581205	7:-58260008	MsG0780039121.01.T01:intron
AAAGTAAGATTCCTAATAGA+TGG	0.315184	7:+58260047	None:intergenic
AACCATGCCTGCCTCCAATA+AGG	0.380348	7:+58256400	None:intergenic
AACCGTTGTGACTCAAGTCA+AGG	0.582732	7:+58260757	None:intergenic
AACTTCAATGACACTGATAT+TGG	0.315388	7:-58260989	MsG0780039121.01.T01:CDS
AAGAATTACCTCCAATTGGA+AGG	0.502800	7:+58258587	None:intergenic
AAGCACTTGCAATTGAAATT+TGG	0.097977	7:+58258112	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATGATAACATATGCCCT+TGG	+	Chr7:58257879-58257898	None:intergenic	30.0%
AAACAAATACAAAGATTGGG+GGG	-	Chr7:58260454-58260473	MsG0780039121.01.T01:intron	30.0%
AAATGATAACATATGCCCTT+GGG	+	Chr7:58257878-58257897	None:intergenic	30.0%
AACTTCAATGACACTGATAT+TGG	-	Chr7:58259011-58259030	MsG0780039121.01.T01:intron	30.0%
AAGCACTTGCAATTGAAATT+TGG	+	Chr7:58261891-58261910	None:intergenic	30.0%
AAGGATAGTAGTACAAGTTA+AGG	-	Chr7:58257727-58257746	MsG0780039121.01.T01:CDS	30.0%
AATTGTTGTAACCTATGTCA+AGG	+	Chr7:58258790-58258809	None:intergenic	30.0%
ACAAACAAAACATAAACCCA+AGG	+	Chr7:58263728-58263747	None:intergenic	30.0%
ACAACGGATAAATAGAAGAA+TGG	+	Chr7:58259545-58259564	None:intergenic	30.0%
ACATATGAAGTTGTATTCCT+TGG	-	Chr7:58263708-58263727	MsG0780039121.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	58256209	58263813	58256209	ID=MsG0780039121.01;Name=MsG0780039121.01
Chr7	mRNA	58256209	58263813	58256209	ID=MsG0780039121.01.T01;Parent=MsG0780039121.01;Name=MsG0780039121.01.T01;_AED=0.21;_eAED=0.21;_QI=0\|0.66\|0.6\|0.9\|1\|1\|10\|121\|1124
Chr7	exon	58256209	58258443	58256209	ID=MsG0780039121.01.T01:exon:6687;Parent=MsG0780039121.01.T01
Chr7	exon	58258596	58258745	58258596	ID=MsG0780039121.01.T01:exon:6686;Parent=MsG0780039121.01.T01
Chr7	exon	58260009	58260158	58260009	ID=MsG0780039121.01.T01:exon:6685;Parent=MsG0780039121.01.T01
Chr7	exon	58260381	58260455	58260381	ID=MsG0780039121.01.T01:exon:6684;Parent=MsG0780039121.01.T01
Chr7	exon	58260661	58260807	58260661	ID=MsG0780039121.01.T01:exon:6683;Parent=MsG0780039121.01.T01
Chr7	exon	58260912	58261049	58260912	ID=MsG0780039121.01.T01:exon:6682;Parent=MsG0780039121.01.T01
Chr7	exon	58261117	58261287	58261117	ID=MsG0780039121.01.T01:exon:6681;Parent=MsG0780039121.01.T01
Chr7	exon	58261410	58261550	58261410	ID=MsG0780039121.01.T01:exon:6680;Parent=MsG0780039121.01.T01
Chr7	exon	58261634	58261879	58261634	ID=MsG0780039121.01.T01:exon:6679;Parent=MsG0780039121.01.T01
Chr7	exon	58263771	58263813	58263771	ID=MsG0780039121.01.T01:exon:6678;Parent=MsG0780039121.01.T01
Chr7	CDS	58263771	58263813	58263771	ID=MsG0780039121.01.T01:cds;Parent=MsG0780039121.01.T01
Chr7	CDS	58261634	58261879	58261634	ID=MsG0780039121.01.T01:cds;Parent=MsG0780039121.01.T01
Chr7	CDS	58261410	58261550	58261410	ID=MsG0780039121.01.T01:cds;Parent=MsG0780039121.01.T01
Chr7	CDS	58261117	58261287	58261117	ID=MsG0780039121.01.T01:cds;Parent=MsG0780039121.01.T01
Chr7	CDS	58260912	58261049	58260912	ID=MsG0780039121.01.T01:cds;Parent=MsG0780039121.01.T01
Chr7	CDS	58260661	58260807	58260661	ID=MsG0780039121.01.T01:cds;Parent=MsG0780039121.01.T01
Chr7	CDS	58260381	58260455	58260381	ID=MsG0780039121.01.T01:cds;Parent=MsG0780039121.01.T01
Chr7	CDS	58260009	58260158	58260009	ID=MsG0780039121.01.T01:cds;Parent=MsG0780039121.01.T01
Chr7	CDS	58258596	58258745	58258596	ID=MsG0780039121.01.T01:cds;Parent=MsG0780039121.01.T01
Chr7	CDS	58256330	58258443	58256330	ID=MsG0780039121.01.T01:cds;Parent=MsG0780039121.01.T01
Chr7	three_prime_UTR	58256209	58256329	58256209	ID=MsG0780039121.01.T01:three_prime_utr;Parent=MsG0780039121.01.T01

Gene Sequence

>MsG0780039121.01.T01

ATGCTATCTCCTTTACCTCGGATCCTTAAAGATCCTACTAGAGGGTGTTGGAAGCAAGAGAGAGAAGCTCTTATTGCTCTGTCTTGGGTAAACAACAGTACTGATTGTTGTGAGTGGGATGGAATTGAATGCAACACCACTACAGGAAGAGTCACCAAAATCAAACTTCAAGATTATCCTATGCCATTATCACTCTCAGTCAACTATTCGGATTTTGCAATCTTCAAAGATTTGAAGACTCTCGACCTGTCATATACTGACATATCCGATTGCACCACTACTGGTCAAGGGTTGAAAAATTTGGAAGTTCTTGACTTGAGTCATAACGATGTGATGGATAATGCCATCGGCATTCTGTCTTGTGTGGATGGACTTTCTTCCCTTAAATCTCTGTCGTTGGCTGATATCAGCTATTTGGTTTCATTTCACGATTTTCAGACAGTTCTGGAGACAATTCCATCGAAGTTGCTACATCTGGAGGTCCTTGACATAGGTTACAACAATTTGAGTAATGAAATCCTTCCATCACTCAGAGAATTCACATCTTTGAAGGAACTGCATTTGAGTGAGATTGGATTGGACTCAGATCTTCATATACAAGGATTAAAGAATCTTGAGATCCTTGACATCTCTGGGAACAACTTCAATGACACTGATATTGGATCTGCGCTTAGTGGCCTTTCTTCCCTCAAGAGTTTAAATTTAGAATATAGTGGAATTACACTGAAGTCAATTCATAATATATTAAAACTGAGGTCTTTGGAGATCCTTGACTTGAGTCACAACGGTTTAAGTAACAATATTATTTCATCCCTAAATGGTCTTCCACGTCTCAAATCTCTTGACTTAAGTTACAACAACTTGAATGGATCGCTTGATATTAGTGGGTTGTCGACTTTAGAGAGCTTGACGATTCTCGATTTTAGCGGGAATCAATTAGTTGATTTAGTTGTTCATAAAGGGTCAAAATTTTTAAGCAGATTGGATATTCTTGATTTAGATTACAATATGATAAATGGAAGCAATCTACAAGAGTGGTTATGGGCTTTCCCATCTATTAGGAATCTTACTTTGAGAGGAAACGAGTTTAAAGGGACAATTCTTAATGGAGGTTTCCGTGGTTTAAGTAATTTGGAATACTTAGCATTGGATCAAAGTTCTAACCTAAAAAATGAGTTTTTCAAAAGTATTGGGGACTTGCCTTCTTTAAAAGTTTTGTCTGTGCAAGCCTGTGGGATAAATGGTACCCTTCCAATTGGAGATTGGTCTAAGCTTAAGAAGTTGGAAGAGTTAGATTTATCCTACAACGATTTTATGGGGAAACTCCCCTCGTCTTTTGTTAATATGACATCACTTAGGACTTTGACACTCACTAATAATCACTTTATTGGTAATATAGGTCCTAACCTTGCAAGTTTTACTTCACTTGAATTTCTCAATTTTGAAGGAAACCAATTCGAATTCCCTATTTCATTCACACAATTTTCCAATCATTCAAACCTTAAGTTCATCTATGGTAATGGGAACAAAGTCATCCTTGATTCACACTCAACTTTGAAGACATGGATTCCCAAATTTCAATTGCAAGTGCTTCAATTGTCTTCAATAACTCATGCCAAGTCTATTCCACTTCCAAATTTTCTTATTCACCAATACAGTTTGACTTATGTGGATTTCACCGGTTGTAAACTAAGAGGAGAGTTTCCAAATTGGTTATTAGAAAACAACACAAAAATGGAAAATCTTATTCTTCAAAATTGTTCCTTTGTAGGAAATTTCCAGCTTCCATCTCGTCCTCTTCTCCACTTGGCAACTATTAACGTATCTTACAATGCAATAACAGGTCAAATGTTGAGTAATAATATCAGTTCAATTTTTCCTAATTTGGTTCATCTAAACATGTCTATAAATGCAATTCACGGTTCAATTCCTTATGAGCTAAGCCACTTGAGATCTTTAGAGGTTTTGGACCTGTCTGATAATGAATTGTCTGGAGAAATACCAAATAACTTATCTGGAGATGGGAGTCAACTCCTTTATTTGACATATTTGTTGTTGGGTGGAAATAGCCTTTCTGGTAGCATCCCAAGTAACCTTTTTGACTTATATACCATTGAAGGTTTGGACATCAGTAATAATAATTTCACCGGAAAAATTCCAAACCAAATAAAAAATAGTTCAAACTTGATTGAGCTTTCTATGTCCAACAATCATTTTGAAGGATCTATTCCATCAGAGGTTGCAGAACTTACAGATCTTAATTTTCTAGATCTTTCACAAAACAATTTGTCAGGTTGTGTTCCTTCTTTTGTAAACAGTCCTGCAACCTTTATCCATTTGAGCAACAACAAATTAAGTTGTTTATCCAAAAACATGTTTGGTGGGAATATAAATTGGTCTTTCTCCCGAGTGACTCTAGACCTTAGCAACAATGAATTATCAAATGGAATTCATGATCTAATACATGACCTCCGTTATACCAGCTTGAAATTTCTCCTTATGAAAGGTAATAACTTCAATGGGAATATACCTAAGCAATTATGCCACCTTACTAATTTAGATATATTAGACCTTTCTTACAATAAATTTGTTGGGGAAATACCTAGATGTTTGGGTAAAATGCCTTTTGAGAATGAGTATCCAGATGCAACAATATTCAATAAAGTCAATTATGGTATTATTTACCCGGGATATAACAGATTTGGGAAAGAGAGAGCAAACTTTACATCAAAGAAAAGATTAGAAACTTATACAACAAATATTCTTATTTATATGTCTGGAATTGATTTATCTCATAATAAGTTAAATGGTAGCATCCCATCTGAGCTAGGAAACTTGACAAAAATTCGAGCTTTGAACTTGTCAAACAATTTTTTAACTGGGAAAGTTCCAACTACATTCTCCAATTTGATACAAGTTGAGAGTTTAGATCTTTCTTTCAACATGTTGAGTGGCCAAATTCCTCCTCAGCTAAGTGGATTGCACTATCTTGAAGTATTCAGTGTGGCCCACAACAATTTATCTGGTTCAACACCTGAATGGAAAGGACAATTTAGTACGTTTGATGAAAGCAGCTATGAAGGTAATCAATTTCTTTGTGGACTTCCATTGCCAAAAAGCTGCAATCCAAGTGGAGAAACACCTGCTACATTACCAAATGGTTTGAACAATGATGGAGATAATGATAATGATAGTTGGGTGGACATGTATGTTTTTCGTGTGAGCTTTGCGGTGGCATACACAACAATACTGTTGGTAATTCCAACTGTTTTGTACATCAATCCTTATTGGAGGCAGGCATGGTTTTACTATATAGGACTGGTGTGTATGAATTGCTACTACTTCATCGAGGACAATTTGTGTAAGTTTTTTTAA

Protein sequence

>MsG0780039121.01.T01

MLSPLPRILKDPTRGCWKQEREALIALSWVNNSTDCCEWDGIECNTTTGRVTKIKLQDYPMPLSLSVNYSDFAIFKDLKTLDLSYTDISDCTTTGQGLKNLEVLDLSHNDVMDNAIGILSCVDGLSSLKSLSLADISYLVSFHDFQTVLETIPSKLLHLEVLDIGYNNLSNEILPSLREFTSLKELHLSEIGLDSDLHIQGLKNLEILDISGNNFNDTDIGSALSGLSSLKSLNLEYSGITLKSIHNILKLRSLEILDLSHNGLSNNIISSLNGLPRLKSLDLSYNNLNGSLDISGLSTLESLTILDFSGNQLVDLVVHKGSKFLSRLDILDLDYNMINGSNLQEWLWAFPSIRNLTLRGNEFKGTILNGGFRGLSNLEYLALDQSSNLKNEFFKSIGDLPSLKVLSVQACGINGTLPIGDWSKLKKLEELDLSYNDFMGKLPSSFVNMTSLRTLTLTNNHFIGNIGPNLASFTSLEFLNFEGNQFEFPISFTQFSNHSNLKFIYGNGNKVILDSHSTLKTWIPKFQLQVLQLSSITHAKSIPLPNFLIHQYSLTYVDFTGCKLRGEFPNWLLENNTKMENLILQNCSFVGNFQLPSRPLLHLATINVSYNAITGQMLSNNISSIFPNLVHLNMSINAIHGSIPYELSHLRSLEVLDLSDNELSGEIPNNLSGDGSQLLYLTYLLLGGNSLSGSIPSNLFDLYTIEGLDISNNNFTGKIPNQIKNSSNLIELSMSNNHFEGSIPSEVAELTDLNFLDLSQNNLSGCVPSFVNSPATFIHLSNNKLSCLSKNMFGGNINWSFSRVTLDLSNNELSNGIHDLIHDLRYTSLKFLLMKGNNFNGNIPKQLCHLTNLDILDLSYNKFVGEIPRCLGKMPFENEYPDATIFNKVNYGIIYPGYNRFGKERANFTSKKRLETYTTNILIYMSGIDLSHNKLNGSIPSELGNLTKIRALNLSNNFLTGKVPTTFSNLIQVESLDLSFNMLSGQIPPQLSGLHYLEVFSVAHNNLSGSTPEWKGQFSTFDESSYEGNQFLCGLPLPKSCNPSGETPATLPNGLNNDGDNDNDSWVDMYVFRVSFAVAYTTILLVIPTVLYINPYWRQAWFYYIGLVCMNCYYFIEDNLCKFF*