AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880041843.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880041843.01.T01 MTR_8g006785 60.600 467 93 10 1 378 1 465 1.59e-175 497
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880041843.01.T01 AT1G10095 38.546 454 168 9 1 378 1 419 2.39e-86 268
MsG0880041843.01.T01 AT1G10095 39.723 433 150 10 1 356 1 399 1.51e-85 265
MsG0880041843.01.T01 AT1G10095 44.068 295 101 6 1 265 1 261 5.18e-68 217
MsG0880041843.01.T01 AT1G10095 44.068 295 101 6 1 265 1 261 5.57e-68 217

Find 88 sgRNAs with CRISPR-Local

Find 444 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAAATTTCAAAGAGATTT+TGG 0.053225 8:-121466 MsG0880041843.01.T01:CDS
CTTTATTTGTAAAATTATTT+TGG 0.061723 8:+117636 None:intergenic
ACTCCAAGCTTGTTCACTTT+TGG 0.178561 8:+121813 None:intergenic
TGTAGATTTGAAGACCTTAT+TGG 0.188433 8:-117992 MsG0880041843.01.T01:CDS
CTGCCCTGTTTGCTGATTGA+TGG 0.205545 8:+123134 None:intergenic
GTAATTCTTTGATCGGAAAA+TGG 0.215983 8:-125100 MsG0880041843.01.T01:five_prime_UTR
AAAGTATAGTTTCTCTTGTT+TGG 0.245840 8:+123093 None:intergenic
TTGGAACAGAGATCATAAAT+TGG 0.250447 8:-123071 MsG0880041843.01.T01:CDS
CTGCTCCTTGACTTGAGATA+TGG 0.265621 8:+117899 None:intergenic
CTTCATTTAACAATGAAAAC+TGG 0.275914 8:+123194 None:intergenic
AATGAAGAGTCTAATTCTTA+TGG 0.301067 8:-124254 MsG0880041843.01.T01:CDS
AACAAGAGAAACTATACTTT+TGG 0.306893 8:-123090 MsG0880041843.01.T01:CDS
TTATGACTGCTTGGAATTGC+AGG 0.316298 8:-122853 MsG0880041843.01.T01:intron
TGTAAGTTGTAGCACAAAAT+AGG 0.316702 8:-117570 MsG0880041843.01.T01:three_prime_UTR
ATCGGAAAATGGGGTTTGTT+TGG 0.327263 8:-125089 MsG0880041843.01.T01:five_prime_UTR
TAGGCAATTGTGAGGATGTT+TGG 0.356671 8:-125037 MsG0880041843.01.T01:intron
AAATGAAGAATCTGGCATTT+CGG 0.372365 8:-123179 MsG0880041843.01.T01:CDS
ATGCAGTGCAGCCCAACTTC+TGG 0.379066 8:+120154 None:intergenic
GTCGCTTTCTTTCCACGTGC+TGG 0.380037 8:-118344 MsG0880041843.01.T01:CDS
TAATTCTTTGATCGGAAAAT+GGG 0.383047 8:-125099 MsG0880041843.01.T01:five_prime_UTR
CCGTCCATCAATCAGCAAAC+AGG 0.392249 8:-123138 MsG0880041843.01.T01:CDS
GTGAACAAGCTTGGAGTCAT+AGG 0.403674 8:-121807 MsG0880041843.01.T01:intron
TGGAACAGAGATCATAAATT+GGG 0.406123 8:-123070 MsG0880041843.01.T01:CDS
CAGCAAGTGCCCAAGCCTCT+TGG 0.415655 8:-118042 MsG0880041843.01.T01:CDS
AGTTCATTTCCAAGAGGCTT+GGG 0.418687 8:+118033 None:intergenic
TTAAATAGAGAAGATTTCTC+AGG 0.421703 8:+117958 None:intergenic
TCATTGTTAAATGAAGAATC+TGG 0.425321 8:-123187 MsG0880041843.01.T01:CDS
GCTAGCATGTTTCATGACTT+TGG 0.434326 8:-118267 MsG0880041843.01.T01:CDS
AAAATGGGGTTTGTTTGGAT+TGG 0.439375 8:-125084 MsG0880041843.01.T01:five_prime_UTR
CTGTTTGCTGATTGATGGAC+GGG 0.446849 8:+123139 None:intergenic
ATTCTGCTAGTTACATACTT+TGG 0.453158 8:-118158 MsG0880041843.01.T01:CDS
TGCTCCTTGACTTGAGATAT+GGG 0.453784 8:+117900 None:intergenic
CCTGTTTGCTGATTGATGGA+CGG 0.458368 8:+123138 None:intergenic
AAGTCAAGGAGCAGGAGTTT+CGG 0.461495 8:-117890 MsG0880041843.01.T01:three_prime_UTR
CAGAATATGTGGCTTGTGCT+TGG 0.464432 8:+118175 None:intergenic
AGGGCATGACTTATCCAATA+AGG 0.468882 8:+117978 None:intergenic
AGTTGAAGAAATCCAGAAGT+TGG 0.470128 8:-120166 MsG0880041843.01.T01:CDS
TTTGGATCCAGTGATGAGCT+GGG 0.471807 8:-123232 MsG0880041843.01.T01:intron
TAAACAAAGTTCAATGTTGT+CGG 0.478060 8:+122955 None:intergenic
GAGTTCATTTCCAAGAGGCT+TGG 0.484081 8:+118032 None:intergenic
CACCCAAAAGTGAACAAGCT+TGG 0.486777 8:-121816 MsG0880041843.01.T01:CDS
TTACATACTTTGGTTGAAAG+TGG 0.487489 8:-118148 MsG0880041843.01.T01:intron
AAACATGCTAGCTTCCTCCT+TGG 0.501239 8:+118278 None:intergenic
AGCTTCCTCCTTGGAATGGT+CGG 0.501888 8:+118287 None:intergenic
TAGTCATACAAGGTACTGTC+AGG 0.506740 8:+125157 None:intergenic
TAATTCTTATGGAAATGCTA+CGG 0.511716 8:-124243 MsG0880041843.01.T01:CDS
TACGGGTCTCTTGCATCAGC+TGG 0.514712 8:-124225 MsG0880041843.01.T01:CDS
GTTGAAGAAATCCAGAAGTT+GGG 0.520728 8:-120165 MsG0880041843.01.T01:CDS
GCTGTGACTTTATGACTGCT+TGG 0.521973 8:-122862 MsG0880041843.01.T01:CDS
TTTAACAATGAAAACTGGGA+TGG 0.522744 8:+123199 None:intergenic
AATTCTTATGGAAATGCTAC+GGG 0.531467 8:-124242 MsG0880041843.01.T01:CDS
TAAATAGAGAAGATTTCTCA+GGG 0.532114 8:+117959 None:intergenic
TTTCTAACTGATTCTAGTGA+CGG 0.533549 8:-118312 MsG0880041843.01.T01:CDS
TTCATTTAACAATGAAAACT+GGG 0.534643 8:+123195 None:intergenic
CAAAATAATAAACAATACAT+AGG 0.536084 8:+117831 None:intergenic
TATGTAACTAGCAGAATATG+TGG 0.536777 8:+118164 None:intergenic
GGCGTTTAAACAATACAAGA+TGG 0.537525 8:-122990 MsG0880041843.01.T01:CDS
TTGAGTTTATCTGCTAGCAT+AGG 0.543720 8:-125056 MsG0880041843.01.T01:five_prime_UTR
ATTAGTGTCTAAGAAGAAGC+AGG 0.548077 8:-121890 MsG0880041843.01.T01:CDS
CTACATCTCTTATCTTCTCA+AGG 0.549991 8:+118010 None:intergenic
TGTTTAGCAGCTCTATATAA+CGG 0.552466 8:+123025 None:intergenic
CATATCTCAAGTCAAGGAGC+AGG 0.555571 8:-117898 MsG0880041843.01.T01:three_prime_UTR
GGGGAAAGAATCTGAGCTTG+TGG 0.560130 8:-121445 MsG0880041843.01.T01:CDS
TGCTAGCTTCCTCCTTGGAA+TGG 0.562432 8:+118283 None:intergenic
GGTGTTGCCCAAAATTTGCA+AGG 0.563325 8:+117658 None:intergenic
CAGCAAAAGTCGAGGTGTGA+AGG 0.567112 8:+118217 None:intergenic
GTATGCTTTCAAGATGGTCA+TGG 0.570789 8:+122918 None:intergenic
GCTATACATCAATAATGTAT+CGG 0.584070 8:+117460 None:intergenic
TATGCTTTCAAGATGGTCAT+GGG 0.585632 8:+122919 None:intergenic
ACATAATTCATTCTGCAGAA+AGG 0.585680 8:+118242 None:intergenic
CGTCCATCAATCAGCAAACA+GGG 0.587489 8:-123137 MsG0880041843.01.T01:CDS
TCAAAAGTATGCTTTCAAGA+TGG 0.587892 8:+122912 None:intergenic
TTGGATCCAGTGATGAGCTG+GGG 0.598597 8:-123231 MsG0880041843.01.T01:intron
GCGTTTAAACAATACAAGAT+GGG 0.601607 8:-122989 MsG0880041843.01.T01:CDS
TGACAGTACCTTGTATGACT+AGG 0.606612 8:-125155 MsG0880041843.01.T01:five_prime_UTR
AAAATTATTTATCCAGCACG+TGG 0.606857 8:+118332 None:intergenic
TATTTGCACAAATCACTCGT+CGG 0.606960 8:+117602 None:intergenic
TGCTAAACATGCATTTATGA+CGG 0.607063 8:-123011 MsG0880041843.01.T01:CDS
AGTTCCCATATCTCAAGTCA+AGG 0.608361 8:-117904 MsG0880041843.01.T01:three_prime_UTR
TGACGGATCCGACCATTCCA+AGG 0.613951 8:-118295 MsG0880041843.01.T01:CDS
GGGTCTCTTGCATCAGCTGG+AGG 0.626069 8:-124222 MsG0880041843.01.T01:CDS
AGATGGTCATGGGATACTGA+AGG 0.627744 8:+122929 None:intergenic
AATTCTTTGATCGGAAAATG+GGG 0.644676 8:-125098 MsG0880041843.01.T01:five_prime_UTR
TCAAGGAGTTCATTTCCAAG+AGG 0.647521 8:+118027 None:intergenic
TGCTAGCATAGGCAATTGTG+AGG 0.659994 8:-125045 MsG0880041843.01.T01:five_prime_UTR
ATCGTCATCAGCAAAAGTCG+AGG 0.675500 8:+118209 None:intergenic
TGGTCATGGGATACTGAAGG+AGG 0.684375 8:+122932 None:intergenic
CGGATCCGACCATTCCAAGG+AGG 0.730357 8:-118292 MsG0880041843.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACATAATATAAAGTTTA+AGG + Chr8:120580-120599 None:intergenic 10.0%
!! AACTAATAATAAACATAAAA+TGG + Chr8:123661-123680 None:intergenic 10.0%
!! AATTTCTTAATAAAAAATTG+GGG + Chr8:118503-118522 None:intergenic 10.0%
!! CAAATTTCTTAATAAAAAAT+TGG + Chr8:118505-118524 None:intergenic 10.0%
!!! ATTTTTTATTAAGAAATTTG+TGG - Chr8:118505-118524 MsG0880041843.01.T01:intron 10.0%
!!! CTTTATTTGTAAAATTATTT+TGG + Chr8:124999-125018 None:intergenic 10.0%
!!! TGATTAATATATTTTTAAGA+TGG - Chr8:118791-118810 MsG0880041843.01.T01:intron 10.0%
!!! TTTTTTATTAAGAAATTTGT+GGG - Chr8:118506-118525 MsG0880041843.01.T01:intron 10.0%
!! AAAAATTGATTGAAATTGAA+AGG - Chr8:123099-123118 MsG0880041843.01.T01:CDS 15.0%
!! AAAAGAAAGAAAAAAAACAA+TGG + Chr8:118307-118326 None:intergenic 15.0%
!! AAATTTGACAATAGAAAATA+AGG + Chr8:120941-120960 None:intergenic 15.0%
!! AATTTGACAATAGAAAATAA+GGG + Chr8:120940-120959 None:intergenic 15.0%
!! AGAAAATATAAAAAGATAAG+AGG + Chr8:119809-119828 None:intergenic 15.0%
!! ATGTAATATGTACATATTAT+AGG - Chr8:117975-117994 MsG0880041843.01.T01:CDS 15.0%
!! CAAAATAATAAACAATACAT+AGG + Chr8:124804-124823 None:intergenic 15.0%
!! CTAAAGAAAAATATATGTAA+TGG + Chr8:119059-119078 None:intergenic 15.0%
!! TGTAATATGTACATATTATA+GGG - Chr8:117976-117995 MsG0880041843.01.T01:CDS 15.0%
!! TTTCAATAAAAAGTTAAACA+TGG - Chr8:122043-122062 MsG0880041843.01.T01:intron 15.0%
!!! AACTATTTTTTCACATATTT+TGG + Chr8:122097-122116 None:intergenic 15.0%
!!! AATTTTACAAATAAAGATTC+AGG - Chr8:125003-125022 MsG0880041843.01.T01:intron 15.0%
!!! ATATATTTTTAAGATGGAAA+TGG - Chr8:118797-118816 MsG0880041843.01.T01:intron 15.0%
!!! ATTTTTTTCTTTAACATCTT+TGG - Chr8:121361-121380 MsG0880041843.01.T01:intron 15.0%
!!! GAATGAAGATATTATTTTAA+TGG + Chr8:123744-123763 None:intergenic 15.0%
!!! TTTATATTTTATTGAAACAC+CGG + Chr8:123835-123854 None:intergenic 15.0%
!!! TTTTTATGTAATTCTTTGAT+CGG - Chr8:117525-117544 MsG0880041843.01.T01:three_prime_UTR 15.0%
!! AACTATAGTGCAAATAAAAA+TGG - Chr8:122313-122332 MsG0880041843.01.T01:intron 20.0%
!! AAGGAATCAATTTCTATAAA+GGG + Chr8:118284-118303 None:intergenic 20.0%
!! AATATGTACATATTACATGA+GGG + Chr8:117973-117992 None:intergenic 20.0%
!! AATTAAAGATGTGCTTATTT+AGG - Chr8:122434-122453 MsG0880041843.01.T01:intron 20.0%
!! ACATTATATCAACCAAAAAT+GGG + Chr8:121951-121970 None:intergenic 20.0%
!! AGAAATTTAAATGCATATCT+AGG - Chr8:124035-124054 MsG0880041843.01.T01:intron 20.0%
!! AGAATTGCATACTATTTAAT+TGG - Chr8:121239-121258 MsG0880041843.01.T01:intron 20.0%
!! ATAAATGAAATAAATGAGCA+AGG + Chr8:122787-122806 None:intergenic 20.0%
!! ATATCTTCATTCATTATCTA+TGG - Chr8:123752-123771 MsG0880041843.01.T01:intron 20.0%
!! CCTATTTATAAGAGAAAATT+AGG - Chr8:124845-124864 MsG0880041843.01.T01:intron 20.0%
!! GTAGAAAAACATATTGTATT+CGG + Chr8:124207-124226 None:intergenic 20.0%
!! GTTCAAAATTTGAACATATA+TGG + Chr8:120918-120937 None:intergenic 20.0%
!! TAAAAAAAGAACTTGTAGAT+AGG - Chr8:117851-117870 MsG0880041843.01.T01:three_prime_UTR 20.0%
!! TAATATGTACATATTACATG+AGG + Chr8:117974-117993 None:intergenic 20.0%
!! TACATTATATCAACCAAAAA+TGG + Chr8:121952-121971 None:intergenic 20.0%
!! TAGAAAAACATATTGTATTC+GGG + Chr8:124206-124225 None:intergenic 20.0%
!! TATCTTCATTCATTATCTAT+GGG - Chr8:123753-123772 MsG0880041843.01.T01:intron 20.0%
!! TCAACAAAAGTTAATGTATT+TGG - Chr8:124868-124887 MsG0880041843.01.T01:intron 20.0%
!! TTACTAGTATATACTAACAT+TGG - Chr8:121321-121340 MsG0880041843.01.T01:intron 20.0%
!! TTCATTTAACAATGAAAACT+GGG + Chr8:119440-119459 None:intergenic 20.0%
!! TTGTCAATGATTTGATTAAT+GGG - Chr8:122395-122414 MsG0880041843.01.T01:intron 20.0%
!! TTTGTCAATGATTTGATTAA+TGG - Chr8:122394-122413 MsG0880041843.01.T01:intron 20.0%
!!! AAAGGATAAATATTTTTCAG+AGG - Chr8:120888-120907 MsG0880041843.01.T01:intron 20.0%
!!! AAATATTTATCCTTTTGTGA+TGG + Chr8:120883-120902 None:intergenic 20.0%
!!! AATATTTATCCTTTTGTGAT+GGG + Chr8:120882-120901 None:intergenic 20.0%
!!! AATCCAGAATATCTAAAATA+TGG + Chr8:120294-120313 None:intergenic 20.0%
!!! AATGACATTCTAGAATTATA+AGG - Chr8:120630-120649 MsG0880041843.01.T01:intron 20.0%
!!! AGCTTATTGTATGATTTTTT+TGG - Chr8:120457-120476 MsG0880041843.01.T01:intron 20.0%
!!! CCTAATTTTCTCTTATAAAT+AGG + Chr8:124848-124867 None:intergenic 20.0%
!!! GATTCTTTTATTGTTCTAAT+AGG - Chr8:118164-118183 MsG0880041843.01.T01:CDS 20.0%
!!! TAAAATTTTCCTGAAAATTC+TGG - Chr8:118115-118134 MsG0880041843.01.T01:intron 20.0%
!!! TATGATTTTTTTGGCTTTAT+TGG - Chr8:120466-120485 MsG0880041843.01.T01:intron 20.0%
!!! TCAAATTTCAAAGAGATTTT+GGG - Chr8:121167-121186 MsG0880041843.01.T01:intron 20.0%
!!! TGATTTTATGACTTCATATT+TGG - Chr8:120528-120547 MsG0880041843.01.T01:intron 20.0%
!!! TTCAAATTTCAAAGAGATTT+TGG - Chr8:121166-121185 MsG0880041843.01.T01:intron 20.0%
!!! TTTGATCTCTGAAAATTAAA+GGG + Chr8:121604-121623 None:intergenic 20.0%
! AAAGTATAGTTTCTCTTGTT+TGG + Chr8:119542-119561 None:intergenic 25.0%
! AACAATTTCATGAAAAGTCT+CGG + Chr8:123804-123823 None:intergenic 25.0%
! AATAATATAACATCCCTATG+AGG - Chr8:123267-123286 MsG0880041843.01.T01:intron 25.0%
! AATGAAGAGTCTAATTCTTA+TGG - Chr8:118378-118397 MsG0880041843.01.T01:intron 25.0%
! ATAACGACTCTAATTATACA+GGG + Chr8:120133-120152 None:intergenic 25.0%
! ATCTATAACCAAGGTAAAAA+GGG + Chr8:123930-123949 None:intergenic 25.0%
! ATGGTGAAATATACATATTG+AGG + Chr8:120275-120294 None:intergenic 25.0%
! ATGTAAACTACAAACATGAA+AGG + Chr8:123014-123033 None:intergenic 25.0%
! ATGTTAATCAATATACCATG+TGG - Chr8:119116-119135 MsG0880041843.01.T01:intron 25.0%
! ATTGAAAGGCAAGATAAAAT+TGG - Chr8:123113-123132 MsG0880041843.01.T01:CDS 25.0%
! CCTATTTATAAGAGAAACTT+GGG + Chr8:124930-124949 None:intergenic 25.0%
! CTAAGTAATTGCTCAAAATT+TGG - Chr8:118993-119012 MsG0880041843.01.T01:intron 25.0%
! CTTATCTAGATTACTTAATC+AGG - Chr8:124548-124567 MsG0880041843.01.T01:intron 25.0%
! CTTCATTTAACAATGAAAAC+TGG + Chr8:119441-119460 None:intergenic 25.0%
! GAAAGAAAAAAAACAATGGA+AGG + Chr8:118303-118322 None:intergenic 25.0%
! GAAATATACATATTGAGGTA+CGG + Chr8:120270-120289 None:intergenic 25.0%
! GAACCAAGATAAAAAGATAA+AGG - Chr8:119904-119923 MsG0880041843.01.T01:intron 25.0%
! GAAGGAATCAATTTCTATAA+AGG + Chr8:118285-118304 None:intergenic 25.0%
! GCTTATACATAAATGCTTAT+AGG - Chr8:117702-117721 MsG0880041843.01.T01:intron 25.0%
! GGAATCTATAAATGTAAATG+TGG + Chr8:124185-124204 None:intergenic 25.0%
! GTCATTCAAAATTGTTAGAA+AGG - Chr8:118919-118938 MsG0880041843.01.T01:intron 25.0%
! GTGAAATTCAAACGAAAAAT+TGG + Chr8:119215-119234 None:intergenic 25.0%
! TAAAACTAGATAGCAATCAA+AGG + Chr8:122871-122890 None:intergenic 25.0%
! TAAACAAAGTTCAATGTTGT+CGG + Chr8:119680-119699 None:intergenic 25.0%
! TAAATAGAGAAGATTTCTCA+GGG + Chr8:124676-124695 None:intergenic 25.0%
! TAATTCTTATGGAAATGCTA+CGG - Chr8:118389-118408 MsG0880041843.01.T01:intron 25.0%
! TAATTCTTTGATCGGAAAAT+GGG - Chr8:117533-117552 MsG0880041843.01.T01:three_prime_UTR 25.0%
! TAATTGCTCAAAATTTGGAA+GGG - Chr8:118998-119017 MsG0880041843.01.T01:intron 25.0%
! TATAAATGTAAATGTGGCTT+TGG + Chr8:124179-124198 None:intergenic 25.0%
! TATACTAGTAAAGCTATACA+AGG + Chr8:123534-123553 None:intergenic 25.0%
! TCATTGTTAAATGAAGAATC+TGG - Chr8:119445-119464 MsG0880041843.01.T01:intron 25.0%
! TCCTATTTATAAGAGAAACT+TGG + Chr8:124931-124950 None:intergenic 25.0%
! TGTCAATGATTTGATTAATG+GGG - Chr8:122396-122415 MsG0880041843.01.T01:intron 25.0%
! TTAAATAGAGAAGATTTCTC+AGG + Chr8:124677-124696 None:intergenic 25.0%
! TTCATAAAAGTAGAATGGTA+AGG + Chr8:118875-118894 None:intergenic 25.0%
!! AACAAGAGAAACTATACTTT+TGG - Chr8:119542-119561 MsG0880041843.01.T01:intron 25.0%
!! AAGTTTTTCCTTGCAAATTT+TGG - Chr8:124966-124985 MsG0880041843.01.T01:intron 25.0%
!! AGATTTAAACCAGAATTTTC+AGG + Chr8:118127-118146 None:intergenic 25.0%
!! AGTTTTTCCTTGCAAATTTT+GGG - Chr8:124967-124986 MsG0880041843.01.T01:intron 25.0%
!! ATATTGATAAAGCGTTATGT+CGG - Chr8:123620-123639 MsG0880041843.01.T01:intron 25.0%
!! ATATTGATTAACATGAACAC+AGG + Chr8:119110-119129 None:intergenic 25.0%
!! ATTATTTTCCTAGTCATACA+AGG + Chr8:117488-117507 None:intergenic 25.0%
!! ATTGTTTTCAGTTGCTTAAA+AGG - Chr8:119882-119901 MsG0880041843.01.T01:intron 25.0%
!! CAAATTTCAAAGAGATTTTG+GGG - Chr8:121168-121187 MsG0880041843.01.T01:intron 25.0%
!! CAAATTTTGAGCAATTACTT+AGG + Chr8:118995-119014 None:intergenic 25.0%
!! CACTTTTCATAAAAGTAGAA+TGG + Chr8:118880-118899 None:intergenic 25.0%
!! CTTTGATCTCTGAAAATTAA+AGG + Chr8:121605-121624 None:intergenic 25.0%
!! TAAATTATAGTCTTGATCGT+TGG - Chr8:123353-123372 MsG0880041843.01.T01:intron 25.0%
!! TTGATCTCTGAAAATTAAAG+GGG + Chr8:121603-121622 None:intergenic 25.0%
!! TTTTCTCTTATAAATAGGAC+CGG + Chr8:124843-124862 None:intergenic 25.0%
!!! ACTTTGTTTTACTCCTAATT+AGG + Chr8:124077-124096 None:intergenic 25.0%
!!! CTACAAGTTCTTTTTTTAGA+AGG + Chr8:117849-117868 None:intergenic 25.0%
!!! CTATAGTAAGTTGTTTTAGA+TGG - Chr8:124226-124245 MsG0880041843.01.T01:CDS 25.0%
!!! GTTTTTACTGACTATACAAA+AGG + Chr8:118348-118367 None:intergenic 25.0%
!!! TAATGTTGTTCGTTTTAAAC+AGG - Chr8:124250-124269 MsG0880041843.01.T01:CDS 25.0%
!!! TCACCATATTTTAGATATTC+TGG - Chr8:120288-120307 MsG0880041843.01.T01:intron 25.0%
!!! TTCTTTTTGTTCTTTGAAGT+TGG - Chr8:118320-118339 MsG0880041843.01.T01:CDS 25.0%
!!! TTTCACATATTTTGGTGAAA+GGG + Chr8:122089-122108 None:intergenic 25.0%
!!! TTTTCACATATTTTGGTGAA+AGG + Chr8:122090-122109 None:intergenic 25.0%
AAAAACTTATATACTCCCTC+CGG + Chr8:124954-124973 None:intergenic 30.0%
AAAATTATTTATCCAGCACG+TGG + Chr8:124303-124322 None:intergenic 30.0%
AAACCCATTCTATCAACTAT+AGG + Chr8:122025-122044 None:intergenic 30.0%
AAACTATAACCATCAGTATC+AGG + Chr8:122562-122581 None:intergenic 30.0%
AAAGGGATCAAAGTTAACTT+TGG + Chr8:123913-123932 None:intergenic 30.0%
AAATAAACTCATGAGTAACG+AGG + Chr8:118054-118073 None:intergenic 30.0%
AAATGAAGAATCTGGCATTT+CGG - Chr8:119453-119472 MsG0880041843.01.T01:intron 30.0%
AAGATAAAATTGGAGCAAGA+AGG - Chr8:123123-123142 MsG0880041843.01.T01:CDS 30.0%
AATAAGCACATCTATAACCA+AGG + Chr8:123939-123958 None:intergenic 30.0%
AATTCTTATGGAAATGCTAC+GGG - Chr8:118390-118409 MsG0880041843.01.T01:intron 30.0%
AATTCTTTGATCGGAAAATG+GGG - Chr8:117534-117553 MsG0880041843.01.T01:three_prime_UTR 30.0%
ACATAATTCATTCTGCAGAA+AGG + Chr8:124393-124412 None:intergenic 30.0%
ACTACAGTACATAATCGTTT+AGG + Chr8:121812-121831 None:intergenic 30.0%
AGAACCCATCAATATATACT+TGG - Chr8:123239-123258 MsG0880041843.01.T01:intron 30.0%
ATGAAATTGTTGTATGTGAC+CGG - Chr8:123813-123832 MsG0880041843.01.T01:intron 30.0%
ATTCCATATCAACATAGTGT+GGG - Chr8:118568-118587 MsG0880041843.01.T01:intron 30.0%
ATTCTGCTAGTTACATACTT+TGG - Chr8:124474-124493 MsG0880041843.01.T01:intron 30.0%
CATAACGACTCTAATTATAC+AGG + Chr8:120134-120153 None:intergenic 30.0%
CATCTATAACCAAGGTAAAA+AGG + Chr8:123931-123950 None:intergenic 30.0%
CATGTTAAAGCAAGAAAAGA+AGG + Chr8:119142-119161 None:intergenic 30.0%
CCCAAGTTTCTCTTATAAAT+AGG - Chr8:124927-124946 MsG0880041843.01.T01:intron 30.0%
CTAATGCTCATTTAGTTGAT+TGG - Chr8:121271-121290 MsG0880041843.01.T01:intron 30.0%
CTGGTTTAAATCTGTTATGT+AGG - Chr8:118134-118153 MsG0880041843.01.T01:intron 30.0%
GAAAACTTCTGTATAACTCT+AGG - Chr8:123881-123900 MsG0880041843.01.T01:intron 30.0%
GAACATATATAGTACTCTTC+TGG + Chr8:121007-121026 None:intergenic 30.0%
GATAACAATTGAACGAGTTT+AGG + Chr8:120222-120241 None:intergenic 30.0%
GATGAGGTTAATATGACAAT+TGG + Chr8:121923-121942 None:intergenic 30.0%
GCGTTTAAACAATACAAGAT+GGG - Chr8:119643-119662 MsG0880041843.01.T01:intron 30.0%
GGGTAAAAACGATGAAAAAT+GGG + Chr8:121583-121602 None:intergenic 30.0%
GTAATTCTTTGATCGGAAAA+TGG - Chr8:117532-117551 MsG0880041843.01.T01:three_prime_UTR 30.0%
GTAATTGCTCAAAATTTGGA+AGG - Chr8:118997-119016 MsG0880041843.01.T01:intron 30.0%
GTGCTTATTGAACAAATACA+TGG - Chr8:123950-123969 MsG0880041843.01.T01:intron 30.0%
GTTATTGAGTATAAGTAACG+TGG - Chr8:117733-117752 MsG0880041843.01.T01:intron 30.0%
GTTGTTGAGAAATAATAACC+TGG - Chr8:119265-119284 MsG0880041843.01.T01:intron 30.0%
GTTTCTCTTATAAATAGGAC+CGG - Chr8:124932-124951 MsG0880041843.01.T01:intron 30.0%
TACCAACTAATCAAAGCATA+CGG + Chr8:117812-117831 None:intergenic 30.0%
TAGAAGAAGCAACAAAACAT+GGG + Chr8:119360-119379 None:intergenic 30.0%
TAGTAAGCTTAAGTCTTACA+TGG - Chr8:123707-123726 MsG0880041843.01.T01:intron 30.0%
TATGTAACTAGCAGAATATG+TGG + Chr8:124471-124490 None:intergenic 30.0%
TGCTAAACATGCATTTATGA+CGG - Chr8:119621-119640 MsG0880041843.01.T01:intron 30.0%
TGGAACAGAGATCATAAATT+GGG - Chr8:119562-119581 MsG0880041843.01.T01:intron 30.0%
TGGATGAAAAAAGTAATCCA+CGG + Chr8:122126-122145 None:intergenic 30.0%
TGTAAGTTGTAGCACAAAAT+AGG - Chr8:125062-125081 MsG0880041843.01.T01:five_prime_UTR 30.0%
TGTAGATTTGAAGACCTTAT+TGG - Chr8:124640-124659 MsG0880041843.01.T01:intron 30.0%
TGTTTAGCAGCTCTATATAA+CGG + Chr8:119610-119629 None:intergenic 30.0%
TTACATACTTTGGTTGAAAG+TGG - Chr8:124484-124503 MsG0880041843.01.T01:intron 30.0%
TTAGAAGAAGCAACAAAACA+TGG + Chr8:119361-119380 None:intergenic 30.0%
TTGGAACAGAGATCATAAAT+TGG - Chr8:119561-119580 MsG0880041843.01.T01:intron 30.0%
TTGTAGTCAACATCATAAGT+TGG - Chr8:119847-119866 MsG0880041843.01.T01:intron 30.0%
TTTAACAATGAAAACTGGGA+TGG + Chr8:119436-119455 None:intergenic 30.0%
TTTGTAGCAACTCATTAGTT+TGG + Chr8:123199-123218 None:intergenic 30.0%
! AAGATTTTCCTGATAACTGT+AGG + Chr8:119954-119973 None:intergenic 30.0%
! AAGTATTTTATCTAGGCGAT+GGG - Chr8:121118-121137 MsG0880041843.01.T01:intron 30.0%
! AATACTTCACCTTTTTGTCA+TGG - Chr8:121510-121529 MsG0880041843.01.T01:CDS 30.0%
! AATGATTATGTCTTTTCCTG+TGG - Chr8:120339-120358 MsG0880041843.01.T01:intron 30.0%
! ACAACCAGCATAATTGTTTT+GGG + Chr8:119987-120006 None:intergenic 30.0%
! AGATTTTCCTGATAACTGTA+GGG + Chr8:119953-119972 None:intergenic 30.0%
! AGTACTCTTCTGGAAAATAT+CGG + Chr8:120997-121016 None:intergenic 30.0%
! ATGTGTTGATGAACATGTTA+AGG - Chr8:119082-119101 MsG0880041843.01.T01:intron 30.0%
! CAGAATATCTAAAATACCAC+AGG + Chr8:120358-120377 None:intergenic 30.0%
! CGCATACAAGTATTTTATCT+AGG - Chr8:121111-121130 MsG0880041843.01.T01:intron 30.0%
! GAGCCTTTATCTTTTTATCT+TGG + Chr8:119910-119929 None:intergenic 30.0%
! TATTGATAAAGCGTTATGTC+GGG - Chr8:123621-123640 MsG0880041843.01.T01:intron 30.0%
! TCAAAAGTATGCTTTCAAGA+TGG + Chr8:119723-119742 None:intergenic 30.0%
! TGTGTTGATGAACATGTTAA+GGG - Chr8:119083-119102 MsG0880041843.01.T01:intron 30.0%
! TTTAATGCTGATTGATCCTA+AGG - Chr8:120962-120981 MsG0880041843.01.T01:intron 30.0%
! TTTCTAACTGATTCTAGTGA+CGG - Chr8:124320-124339 MsG0880041843.01.T01:intron 30.0%
!! ATGCCTATAGTTGATAGAAT+GGG - Chr8:122019-122038 MsG0880041843.01.T01:intron 30.0%
!! CATTAGTGTGATTTGTTTGT+AGG - Chr8:120500-120519 MsG0880041843.01.T01:intron 30.0%
!! CTGTGGTATTTTAGATATTC+TGG - Chr8:120356-120375 MsG0880041843.01.T01:intron 30.0%
!!! ACAGAACATGTCTTGTTTTT+TGG + Chr8:121470-121489 None:intergenic 30.0%
!!! TTCACATATTTTGGTGAAAG+GGG + Chr8:122088-122107 None:intergenic 30.0%
AACAATTGAACGAGTTTAGG+AGG + Chr8:120219-120238 None:intergenic 35.0%
ACAAAACGTTATCTCACTGA+AGG - Chr8:121429-121448 MsG0880041843.01.T01:intron 35.0%
ACTAATCAAAGCATACGGAA+TGG + Chr8:117807-117826 None:intergenic 35.0%
ACTAGTAAAGCTATACAAGG+TGG + Chr8:123531-123550 None:intergenic 35.0%
AGCTTAAGTCTTACATGGAT+CGG - Chr8:123712-123731 MsG0880041843.01.T01:intron 35.0%
AGTAACAATTATCCTTCGCT+TGG + Chr8:121306-121325 None:intergenic 35.0%
AGTCTCAAAATGGAAAGTCT+AGG + Chr8:124527-124546 None:intergenic 35.0%
AGTTGAAGAAATCCAGAAGT+TGG - Chr8:122466-122485 MsG0880041843.01.T01:intron 35.0%
ATATGTTGATCCAACACACT+TGG + Chr8:118945-118964 None:intergenic 35.0%
ATCAAAGGTCCTTCAATCTT+AGG + Chr8:122856-122875 None:intergenic 35.0%
ATGAAAAAAGTAATCCACGG+GGG + Chr8:122123-122142 None:intergenic 35.0%
ATGCATATCTAGGAAACACA+CGG - Chr8:124045-124064 MsG0880041843.01.T01:intron 35.0%
ATTAGTGTCTAAGAAGAAGC+AGG - Chr8:120742-120761 MsG0880041843.01.T01:intron 35.0%
ATTGTTCTAATAGGATGTGC+TGG - Chr8:118173-118192 MsG0880041843.01.T01:CDS 35.0%
ATTTCGTGACTTATTGCTAG+TGG + Chr8:121767-121786 None:intergenic 35.0%
CAAAACGTTATCTCACTGAA+GGG - Chr8:121430-121449 MsG0880041843.01.T01:intron 35.0%
CAAAGATGAATTATCGTGCT+TGG - Chr8:121620-121639 MsG0880041843.01.T01:intron 35.0%
CACTGGATCCAAAAGAATAA+GGG + Chr8:119393-119412 None:intergenic 35.0%
CATTCCATATCAACATAGTG+TGG - Chr8:118567-118586 MsG0880041843.01.T01:intron 35.0%
CCAGCCAAGTATATATTGAT+GGG + Chr8:123246-123265 None:intergenic 35.0%
CTACATCTCTTATCTTCTCA+AGG + Chr8:124625-124644 None:intergenic 35.0%
CTAGATAAGCAGTCTCAAAA+TGG + Chr8:124537-124556 None:intergenic 35.0%
CTATTATTACCTTCACTGCT+TGG + Chr8:122764-122783 None:intergenic 35.0%
CTCATACATGACTAAAGAAC+AGG - Chr8:121663-121682 MsG0880041843.01.T01:intron 35.0%
GAACGAATTGATTGCTAAGA+GGG + Chr8:119306-119325 None:intergenic 35.0%
GATGAAAAAAGTAATCCACG+GGG + Chr8:122124-122143 None:intergenic 35.0%
GCAAGTATGTATCACAATTC+TGG - Chr8:121713-121732 MsG0880041843.01.T01:intron 35.0%
GGATGAAAAAAGTAATCCAC+GGG + Chr8:122125-122144 None:intergenic 35.0%
GGCAAGAAAACATACGAAAA+TGG - Chr8:120651-120670 MsG0880041843.01.T01:intron 35.0%
GGCGTTTAAACAATACAAGA+TGG - Chr8:119642-119661 MsG0880041843.01.T01:intron 35.0%
GGGGTAAAAACGATGAAAAA+TGG + Chr8:121584-121603 None:intergenic 35.0%
GTAACAATTATCCTTCGCTT+GGG + Chr8:121305-121324 None:intergenic 35.0%
GTAATATGTTGCTACACACA+TGG - Chr8:118629-118648 MsG0880041843.01.T01:intron 35.0%
GTACATATTACATGAGGGTA+TGG + Chr8:117968-117987 None:intergenic 35.0%
GTCTCAAAATGGAAAGTCTA+GGG + Chr8:124526-124545 None:intergenic 35.0%
GTTACTGCAGAAAATTATGG+AGG - Chr8:122686-122705 MsG0880041843.01.T01:intron 35.0%
GTTGAAGAAATCCAGAAGTT+GGG - Chr8:122467-122486 MsG0880041843.01.T01:intron 35.0%
TACACACATGGTATTCTCTT+AGG - Chr8:118641-118660 MsG0880041843.01.T01:intron 35.0%
TAGCAGAAAACCTATGACAT+GGG - Chr8:120039-120058 MsG0880041843.01.T01:intron 35.0%
TATGCTTTCAAGATGGTCAT+GGG + Chr8:119716-119735 None:intergenic 35.0%
TATTTGCACAAATCACTCGT+CGG + Chr8:125033-125052 None:intergenic 35.0%
TCACTGGATCCAAAAGAATA+AGG + Chr8:119394-119413 None:intergenic 35.0%
TCCAGCCAAGTATATATTGA+TGG + Chr8:123247-123266 None:intergenic 35.0%
TCCTAATCTCCATGACAAAA+AGG + Chr8:121522-121541 None:intergenic 35.0%
TCTGAACTGAATTTAGACCT+CGG + Chr8:121222-121241 None:intergenic 35.0%
TCTTAGCAATCAATTCGTTC+AGG - Chr8:119306-119325 MsG0880041843.01.T01:intron 35.0%
TGAACGAATTGATTGCTAAG+AGG + Chr8:119307-119326 None:intergenic 35.0%
TGAGTATAAGTAACGTGGTT+TGG - Chr8:117738-117757 MsG0880041843.01.T01:intron 35.0%
TTATATTGTCCAAGCAGTGA+AGG - Chr8:122752-122771 MsG0880041843.01.T01:intron 35.0%
TTCATCCAAAATCTCTGTTG+AGG - Chr8:122138-122157 MsG0880041843.01.T01:intron 35.0%
TTCCATATCAACATAGTGTG+GGG - Chr8:118569-118588 MsG0880041843.01.T01:intron 35.0%
TTCCGTATGCTTTGATTAGT+TGG - Chr8:117807-117826 MsG0880041843.01.T01:intron 35.0%
TTCTCCCAAAACAATTATGC+TGG - Chr8:119980-119999 MsG0880041843.01.T01:intron 35.0%
TTGAGTTTATCTGCTAGCAT+AGG - Chr8:117576-117595 MsG0880041843.01.T01:three_prime_UTR 35.0%
TTGTGTTCTTGTGTAGTTGT+TGG - Chr8:121878-121897 MsG0880041843.01.T01:CDS 35.0%
TTGTTTGAACCTGATACTGA+TGG - Chr8:122550-122569 MsG0880041843.01.T01:intron 35.0%
TTTCTGCAATATGCACAAAC+AGG + Chr8:120719-120738 None:intergenic 35.0%
! AAAATGGGGTTTGTTTGGAT+TGG - Chr8:117548-117567 MsG0880041843.01.T01:three_prime_UTR 35.0%
! AAAGGCTCATAGTTGATTCT+TGG - Chr8:119922-119941 MsG0880041843.01.T01:intron 35.0%
! ACCTTTTTGTCATGGAGATT+AGG - Chr8:121518-121537 MsG0880041843.01.T01:CDS 35.0%
! ACTTTGATCCCTTTTTACCT+TGG - Chr8:123919-123938 MsG0880041843.01.T01:intron 35.0%
! ATATCGGTGTTCAAAACCTT+AGG + Chr8:120981-121000 None:intergenic 35.0%
! ATGTCATAGGTTTTCTGCTA+GGG + Chr8:120039-120058 None:intergenic 35.0%
! CAAAACAATTATGCTGGTTG+TGG - Chr8:119986-120005 MsG0880041843.01.T01:intron 35.0%
! CAAGTATTTTATCTAGGCGA+TGG - Chr8:121117-121136 MsG0880041843.01.T01:intron 35.0%
! CACAACCAGCATAATTGTTT+TGG + Chr8:119988-120007 None:intergenic 35.0%
! CACGTTTTCCCTTATTCTTT+TGG - Chr8:119382-119401 MsG0880041843.01.T01:intron 35.0%
! GTGCTTTTCACACATAACAT+TGG + Chr8:125136-125155 None:intergenic 35.0%
! GTGTTTAGCTCAAAATATGC+TGG + Chr8:121561-121580 None:intergenic 35.0%
! TGTGACAGTTATGATTTGTC+AGG - Chr8:123577-123596 MsG0880041843.01.T01:intron 35.0%
! TGTTGGTTAACCTTAGTTGT+TGG - Chr8:121895-121914 MsG0880041843.01.T01:CDS 35.0%
! TTTGACCTCAACAGAGATTT+TGG + Chr8:122146-122165 None:intergenic 35.0%
!! AATGTAAATGTGGCTTTGGT+AGG + Chr8:124175-124194 None:intergenic 35.0%
!! ACTTTTGCTGATGACGATTA+TGG - Chr8:124428-124447 MsG0880041843.01.T01:intron 35.0%
!! ATGTAAATGTGGCTTTGGTA+GGG + Chr8:124174-124193 None:intergenic 35.0%
!! ATTGTGCTGAATTTTCTAGC+AGG + Chr8:122960-122979 None:intergenic 35.0%
!! CATGCCTATAGTTGATAGAA+TGG - Chr8:122018-122037 MsG0880041843.01.T01:intron 35.0%
!! CTTTTGCTGATGACGATTAT+GGG - Chr8:124429-124448 MsG0880041843.01.T01:intron 35.0%
!! TCTGGATTAGTTCGTAAAAG+CGG - Chr8:120306-120325 MsG0880041843.01.T01:intron 35.0%
!! TTCGTTTTAAACAGGCTCTA+TGG - Chr8:124258-124277 MsG0880041843.01.T01:CDS 35.0%
!! TTTAGTACCGATTGATCTGA+AGG - Chr8:121063-121082 MsG0880041843.01.T01:intron 35.0%
!! TTTTGCTGATGACGATTATG+GGG - Chr8:124430-124449 MsG0880041843.01.T01:intron 35.0%
!!! GAAGGTTTTGGGACATTAAT+AGG - Chr8:121081-121100 MsG0880041843.01.T01:intron 35.0%
AAGTGCGATAAGTAGTGCAT+TGG + Chr8:123422-123441 None:intergenic 40.0%
ACACAAGAAACCCATGTCAT+AGG + Chr8:120052-120071 None:intergenic 40.0%
AGCAGTAATTCAGCCTCATA+GGG + Chr8:123283-123302 None:intergenic 40.0%
AGGGCATGACTTATCCAATA+AGG + Chr8:124657-124676 None:intergenic 40.0%
AGTTCATTTCCAAGAGGCTT+GGG + Chr8:124602-124621 None:intergenic 40.0%
AGTTCCCATATCTCAAGTCA+AGG - Chr8:124728-124747 MsG0880041843.01.T01:intron 40.0%
ATATATTCCCGTTCCCTGTT+TGG - Chr8:121971-121990 MsG0880041843.01.T01:intron 40.0%
CACTGAAGGGAAAAAGATAG+AGG - Chr8:121443-121462 MsG0880041843.01.T01:CDS 40.0%
CAGATTCTTCCGCATTACTT+CGG + Chr8:122713-122732 None:intergenic 40.0%
CCCAAAACCTTCAGATCAAT+CGG + Chr8:121073-121092 None:intergenic 40.0%
CCCATCAATATATACTTGGC+TGG - Chr8:123243-123262 MsG0880041843.01.T01:intron 40.0%
CTAGCAGAAAACCTATGACA+TGG - Chr8:120038-120057 MsG0880041843.01.T01:intron 40.0%
CTCCGTTTAAGAGTTTCAAG+GGG - Chr8:118664-118683 MsG0880041843.01.T01:intron 40.0%
CTCTGTTTGTGAGTCTAGAA+GGG + Chr8:118852-118871 None:intergenic 40.0%
CTCTTATAAATAGGACCGGA+GGG - Chr8:124936-124955 MsG0880041843.01.T01:intron 40.0%
CTCTTATAAATAGGACCGGA+GGG + Chr8:124955-124936 None:intergenic 40.0%
GAGTCTGATGCTCTAATGTA+AGG - Chr8:118441-118460 MsG0880041843.01.T01:intron 40.0%
GCATGCTCATACTCATTCAA+AGG + Chr8:122003-122022 None:intergenic 40.0%
GCGGTTACTGCAGAAAATTA+TGG - Chr8:122683-122702 MsG0880041843.01.T01:intron 40.0%
GCTAGCATGTTTCATGACTT+TGG - Chr8:124365-124384 MsG0880041843.01.T01:intron 40.0%
GCTCCGTTTAAGAGTTTCAA+GGG - Chr8:118663-118682 MsG0880041843.01.T01:intron 40.0%
GGTAAGTACATATCTCCATG+TGG + Chr8:118033-118052 None:intergenic 40.0%
GTATGCTTTCAAGATGGTCA+TGG + Chr8:119717-119736 None:intergenic 40.0%
TAGCAGTAATTCAGCCTCAT+AGG + Chr8:123284-123303 None:intergenic 40.0%
TAGCGTACATCATATTGCAG+CGG - Chr8:122664-122683 MsG0880041843.01.T01:intron 40.0%
TAGGCAATTGTGAGGATGTT+TGG - Chr8:117595-117614 MsG0880041843.01.T01:three_prime_UTR 40.0%
TATGTAGCAGTTTCCCCTTA+TGG - Chr8:120853-120872 MsG0880041843.01.T01:intron 40.0%
TCAAAGGACCTTACCAAACA+GGG + Chr8:121987-122006 None:intergenic 40.0%
TCAAGGAGTTCATTTCCAAG+AGG + Chr8:124608-124627 None:intergenic 40.0%
TCAGTCCAACACAATGTTGT+CGG + Chr8:122185-122204 None:intergenic 40.0%
TCCCCCTTGAAACTCTTAAA+CGG + Chr8:118669-118688 None:intergenic 40.0%
TCCGTTTAAGAGTTTCAAGG+GGG - Chr8:118665-118684 MsG0880041843.01.T01:intron 40.0%
TCCTTCACAGGAACTTTGAA+AGG - Chr8:123454-123473 MsG0880041843.01.T01:intron 40.0%
TCTCTTATAAATAGGACCGG+AGG - Chr8:124935-124954 MsG0880041843.01.T01:intron 40.0%
TCTCTTATAAATAGGACCGG+AGG + Chr8:124954-124935 None:intergenic 40.0%
TCTGTTTGTGAGTCTAGAAG+GGG + Chr8:118851-118870 None:intergenic 40.0%
TGACAGTACCTTGTATGACT+AGG - Chr8:117477-117496 MsG0880041843.01.T01:three_prime_UTR 40.0%
TTATGACTGCTTGGAATTGC+AGG - Chr8:119779-119798 MsG0880041843.01.T01:intron 40.0%
TTATGGCTTCCCATCACAAA+AGG - Chr8:120870-120889 MsG0880041843.01.T01:intron 40.0%
TTCAAAGGACCTTACCAAAC+AGG + Chr8:121988-122007 None:intergenic 40.0%
TTGATATCTTGTACTCCCTC+CGG - Chr8:124821-124840 MsG0880041843.01.T01:intron 40.0%
TTTCCTGATAACTGTAGGGA+TGG + Chr8:119949-119968 None:intergenic 40.0%
! ACAATTGGCTCCAACAACTA+AGG + Chr8:121908-121927 None:intergenic 40.0%
! ACCGATTGATCTGAAGGTTT+TGG - Chr8:121069-121088 MsG0880041843.01.T01:intron 40.0%
! ATCGGAAAATGGGGTTTGTT+TGG - Chr8:117543-117562 MsG0880041843.01.T01:three_prime_UTR 40.0%
! CATGTCATAGGTTTTCTGCT+AGG + Chr8:120040-120059 None:intergenic 40.0%
! CCGATTGATCTGAAGGTTTT+GGG - Chr8:121070-121089 MsG0880041843.01.T01:intron 40.0%
! CCTCATCATTAGCCCATTTT+TGG - Chr8:121936-121955 MsG0880041843.01.T01:intron 40.0%
! CCTTCACAGGAACTTTGAAA+GGG - Chr8:123455-123474 MsG0880041843.01.T01:intron 40.0%
! CTCTAAGAAGTCTCAAGAGT+AGG - Chr8:119234-119253 MsG0880041843.01.T01:intron 40.0%
! TCTGAAGTGCCTAAGATTGA+AGG - Chr8:122844-122863 MsG0880041843.01.T01:intron 40.0%
! TGAACAAATACATGGTGCCA+TGG - Chr8:123958-123977 MsG0880041843.01.T01:intron 40.0%
! TGCTCCTTGACTTGAGATAT+GGG + Chr8:124735-124754 None:intergenic 40.0%
! TGTATGAGATTAGCCAGCAA+CGG + Chr8:121651-121670 None:intergenic 40.0%
! TTTGTGATGGGAAGCCATAA+GGG + Chr8:120870-120889 None:intergenic 40.0%
! TTTGTGGGTTTTGCGACATT+TGG - Chr8:118521-118540 MsG0880041843.01.T01:intron 40.0%
!! AATGTTGACTCACTTCCACA+TGG - Chr8:118015-118034 MsG0880041843.01.T01:CDS 40.0%
!! ACTCCAAGCTTGTTCACTTT+TGG + Chr8:120822-120841 None:intergenic 40.0%
!! CCAAAAATGGGCTAATGATG+AGG + Chr8:121939-121958 None:intergenic 40.0%
!! CGTTTTGAGCAAATGTGCTA+AGG - Chr8:119033-119052 MsG0880041843.01.T01:intron 40.0%
!! CTCCAAGCTTGTTCACTTTT+GGG + Chr8:120821-120840 None:intergenic 40.0%
!! TAGTCATACAAGGTACTGTC+AGG + Chr8:117478-117497 None:intergenic 40.0%
!! TGGCTTTGGTAGGGTTATTA+TGG + Chr8:124165-124184 None:intergenic 40.0%
!! TTTTGTGATGGGAAGCCATA+AGG + Chr8:120871-120890 None:intergenic 40.0%
!!! AATCACAGTTTTGACTCCAC+AGG + Chr8:120426-120445 None:intergenic 40.0%
!!! TATTTTGGTGAAAGGGGAAG+TGG + Chr8:122082-122101 None:intergenic 40.0%
AAAAAATAGTTCAGCCCCCG+TGG - Chr8:122106-122125 MsG0880041843.01.T01:intron 45.0%
AAACGCACAAACAACAGCGT+AGG - Chr8:124120-124139 MsG0880041843.01.T01:intron 45.0%
AACATTGTGTTGGACTGACC+TGG - Chr8:122187-122206 MsG0880041843.01.T01:intron 45.0%
AAGCCAACTCCTTCACACTA+AGG + Chr8:117922-117941 None:intergenic 45.0%
AAGTCAAGGAGCAGGAGTTT+CGG - Chr8:124742-124761 MsG0880041843.01.T01:intron 45.0%
AATAAACCCCAGCTCATCAC+TGG + Chr8:119410-119429 None:intergenic 45.0%
ACATTGTGTTGGACTGACCT+GGG - Chr8:122188-122207 MsG0880041843.01.T01:intron 45.0%
AGATGGTCATGGGATACTGA+AGG + Chr8:119706-119725 None:intergenic 45.0%
AGCAAGAAAAGAAGGCCACA+TGG + Chr8:119134-119153 None:intergenic 45.0%
ATCGTCATCAGCAAAAGTCG+AGG + Chr8:124426-124445 None:intergenic 45.0%
ATCGTTGGAGTATGTGTGGA+AGG - Chr8:123368-123387 MsG0880041843.01.T01:intron 45.0%
ATTGAGGTACGGAAAGAGCT+AGG + Chr8:120259-120278 None:intergenic 45.0%
CAAACAGAGCCTTAGTGTGA+AGG - Chr8:117910-117929 MsG0880041843.01.T01:three_prime_UTR 45.0%
CACACGGTTTCTGCCTAATT+AGG - Chr8:124061-124080 MsG0880041843.01.T01:intron 45.0%
CACCCAAAAGTGAACAAGCT+TGG - Chr8:120816-120835 MsG0880041843.01.T01:intron 45.0%
CAGTCCAACACAATGTTGTC+GGG + Chr8:122184-122203 None:intergenic 45.0%
CATATCTCAAGTCAAGGAGC+AGG - Chr8:124734-124753 MsG0880041843.01.T01:intron 45.0%
CCCTTTCAAAGTTCCTGTGA+AGG + Chr8:123458-123477 None:intergenic 45.0%
CGAAAGTTACTGGTCAGGTA+CGG + Chr8:122219-122238 None:intergenic 45.0%
CGTACCTGACCAGTAACTTT+CGG - Chr8:122217-122236 MsG0880041843.01.T01:intron 45.0%
CGTCCATCAATCAGCAAACA+GGG - Chr8:119495-119514 MsG0880041843.01.T01:intron 45.0%
CTTCACACTAAGGCTCTGTT+TGG + Chr8:117912-117931 None:intergenic 45.0%
CTTGATCGTTGGAGTATGTG+TGG - Chr8:123364-123383 MsG0880041843.01.T01:intron 45.0%
GACCCCACACTATGTTGATA+TGG + Chr8:118574-118593 None:intergenic 45.0%
GAGTTCATTTCCAAGAGGCT+TGG + Chr8:124603-124622 None:intergenic 45.0%
GCGGAAGAATCTGCATCTTA+TGG - Chr8:122720-122739 MsG0880041843.01.T01:intron 45.0%
GCTCTGTTTGTGAGTCTAGA+AGG + Chr8:118853-118872 None:intergenic 45.0%
GCTGTGACTTTATGACTGCT+TGG - Chr8:119770-119789 MsG0880041843.01.T01:intron 45.0%
GCTTGTGGAAAAAATAGCCG+AGG - Chr8:121202-121221 MsG0880041843.01.T01:intron 45.0%
GGCTCCGTTTAAGAGTTTCA+AGG - Chr8:118662-118681 MsG0880041843.01.T01:intron 45.0%
GTATCACACGTTTCCTTCAC+AGG - Chr8:123442-123461 MsG0880041843.01.T01:intron 45.0%
GTGAACAAGCTTGGAGTCAT+AGG - Chr8:120825-120844 MsG0880041843.01.T01:intron 45.0%
GTTAGAAAGGCCAAGTGTGT+TGG - Chr8:118932-118951 MsG0880041843.01.T01:intron 45.0%
TAAGTCTTACATGGATCGGC+TGG - Chr8:123716-123735 MsG0880041843.01.T01:intron 45.0%
TATGCCCGACAACATTGTGT+TGG - Chr8:122177-122196 MsG0880041843.01.T01:intron 45.0%
TATGGAGGACCGAAGTAATG+CGG - Chr8:122701-122720 MsG0880041843.01.T01:intron 45.0%
TCTGCTAGGGAGGTTAACTA+CGG + Chr8:120026-120045 None:intergenic 45.0%
TGAGGCTGAATTACTGCTAC+TGG - Chr8:123285-123304 MsG0880041843.01.T01:intron 45.0%
TGCTAGCATAGGCAATTGTG+AGG - Chr8:117587-117606 MsG0880041843.01.T01:three_prime_UTR 45.0%
TGGAGTATGTGTGGAAGGTT+TGG - Chr8:123373-123392 MsG0880041843.01.T01:intron 45.0%
TTTGGATCCAGTGATGAGCT+GGG - Chr8:119400-119419 MsG0880041843.01.T01:intron 45.0%
TTTGGCTGACCGAAAGTTAC+TGG + Chr8:122229-122248 None:intergenic 45.0%
TTTGTCAGGACGAACTCGAT+TGG - Chr8:123591-123610 MsG0880041843.01.T01:intron 45.0%
TTTGTGAGTCTAGAAGGGGA+GGG + Chr8:118847-118866 None:intergenic 45.0%
! AAACATGCTAGCTTCCTCCT+TGG + Chr8:124357-124376 None:intergenic 45.0%
! CAGAATATGTGGCTTGTGCT+TGG + Chr8:124460-124479 None:intergenic 45.0%
! CCTGTTTGCTGATTGATGGA+CGG + Chr8:119497-119516 None:intergenic 45.0%
! CTGCTCCTTGACTTGAGATA+TGG + Chr8:124736-124755 None:intergenic 45.0%
! CTGTTTGCTGATTGATGGAC+GGG + Chr8:119496-119515 None:intergenic 45.0%
! GGTGTTGCCCAAAATTTGCA+AGG + Chr8:124977-124996 None:intergenic 45.0%
! TCATAGGTTTTCTGCTAGGG+AGG + Chr8:120036-120055 None:intergenic 45.0%
! TGGTTTTCTTACCCAAGCGA+AGG - Chr8:121291-121310 MsG0880041843.01.T01:intron 45.0%
! TTGTGATGGGAAGCCATAAG+GGG + Chr8:120869-120888 None:intergenic 45.0%
! TTTTGGATCCAGTGATGAGC+TGG - Chr8:119399-119418 MsG0880041843.01.T01:intron 45.0%
!! ACAAATACATGGTGCCATGG+TGG - Chr8:123961-123980 MsG0880041843.01.T01:intron 45.0%
!! GGGTGTTATTCTAACAGTCC+AGG + Chr8:119286-119305 None:intergenic 45.0%
!! GTGCTGAATTTTCTAGCAGG+AGG + Chr8:122957-122976 None:intergenic 45.0%
!! TCTGCAAAAAGCATCCACCA+TGG + Chr8:123978-123997 None:intergenic 45.0%
!!! GCATACTTTTGAGACACAGC+AGG - Chr8:119731-119750 MsG0880041843.01.T01:intron 45.0%
!! AAATTTCTTAATAAAAAATT+GGG + Chr8:118504-118523 None:intergenic 5.0%
!!! TTAATATTTTTAATACAAAA+TGG + Chr8:121402-121421 None:intergenic 5.0%
!!! TTTATTTGTAAAATTATTTT+GGG + Chr8:124998-125017 None:intergenic 5.0%
AGCTTCCTCCTTGGAATGGT+CGG + Chr8:124348-124367 None:intergenic 50.0%
CAGCAAAAGTCGAGGTGTGA+AGG + Chr8:124418-124437 None:intergenic 50.0%
CCGTCCATCAATCAGCAAAC+AGG - Chr8:119494-119513 MsG0880041843.01.T01:intron 50.0%
CTAGGGAGGTTAACTACGGA+AGG + Chr8:120022-120041 None:intergenic 50.0%
CTGACCGAAAGTTACTGGTC+AGG + Chr8:122224-122243 None:intergenic 50.0%
GACCTTACCAAACAGGGAAC+GGG + Chr8:121981-122000 None:intergenic 50.0%
GAGCCTTAGTGTGAAGGAGT+TGG - Chr8:117916-117935 MsG0880041843.01.T01:three_prime_UTR 50.0%
GCCAAAATCGAGCTAAGCTG+AGG - Chr8:122243-122262 MsG0880041843.01.T01:intron 50.0%
GGACCTTACCAAACAGGGAA+CGG + Chr8:121982-122001 None:intergenic 50.0%
GGAGAGAATGAGAGGGCTTT+GGG - Chr8:118686-118705 MsG0880041843.01.T01:intron 50.0%
GGGGAAAGAATCTGAGCTTG+TGG - Chr8:121187-121206 MsG0880041843.01.T01:intron 50.0%
GGTCCATCCCTACAGTTATC+AGG - Chr8:119943-119962 MsG0880041843.01.T01:intron 50.0%
GTGAAAGGGGAAGTGGAATG+TGG + Chr8:122075-122094 None:intergenic 50.0%
GTTTGTGAGTCTAGAAGGGG+AGG + Chr8:118848-118867 None:intergenic 50.0%
TCAAGGGGGAGAGAATGAGA+GGG - Chr8:118679-118698 MsG0880041843.01.T01:intron 50.0%
TGGTCATGGGATACTGAAGG+AGG + Chr8:119703-119722 None:intergenic 50.0%
TTCAAGGGGGAGAGAATGAG+AGG - Chr8:118678-118697 MsG0880041843.01.T01:intron 50.0%
TTCCCGTTCCCTGTTTGGTA+AGG - Chr8:121976-121995 MsG0880041843.01.T01:intron 50.0%
TTGGATCCAGTGATGAGCTG+GGG - Chr8:119401-119420 MsG0880041843.01.T01:intron 50.0%
TTGTGAGTCTAGAAGGGGAG+GGG + Chr8:118846-118865 None:intergenic 50.0%
! AAAGCGTTATGTCGGGAGAG+AGG - Chr8:123628-123647 MsG0880041843.01.T01:intron 50.0%
! CTGCCCTGTTTGCTGATTGA+TGG + Chr8:119501-119520 None:intergenic 50.0%
! GCCTCAGCTTAGCTCGATTT+TGG + Chr8:122247-122266 None:intergenic 50.0%
! TGCTAGCTTCCTCCTTGGAA+TGG + Chr8:124352-124371 None:intergenic 50.0%
ATGCAGTGCAGCCCAACTTC+TGG + Chr8:122481-122500 None:intergenic 55.0%
CGTTATGTCGGGAGAGAGGT+AGG - Chr8:123632-123651 MsG0880041843.01.T01:intron 55.0%
GGGAGAGAATGAGAGGGCTT+TGG - Chr8:118685-118704 MsG0880041843.01.T01:intron 55.0%
GTGCTTGGAATCACCGTTGC+TGG - Chr8:121635-121654 MsG0880041843.01.T01:intron 55.0%
TACGGGTCTCTTGCATCAGC+TGG - Chr8:118407-118426 MsG0880041843.01.T01:intron 55.0%
TATGTCGGGAGAGAGGTAGG+TGG - Chr8:123635-123654 MsG0880041843.01.T01:intron 55.0%
! GTCGCTTTCTTTCCACGTGC+TGG - Chr8:124288-124307 MsG0880041843.01.T01:five_prime_UTR 55.0%
! TGACGGATCCGACCATTCCA+AGG - Chr8:124337-124356 MsG0880041843.01.T01:intron 55.0%
!! AATGAGAGGGCTTTGGGAGG+AGG - Chr8:118692-118711 MsG0880041843.01.T01:intron 55.0%
!! ATGAGAGGGCTTTGGGAGGA+GGG - Chr8:118693-118712 MsG0880041843.01.T01:intron 55.0%
!! GAGAATGAGAGGGCTTTGGG+AGG - Chr8:118689-118708 MsG0880041843.01.T01:intron 55.0%
CAGCAAGTGCCCAAGCCTCT+TGG - Chr8:124590-124609 MsG0880041843.01.T01:intron 60.0%
CGGATCCGACCATTCCAAGG+AGG - Chr8:124340-124359 MsG0880041843.01.T01:intron 60.0%
GGGTCTCTTGCATCAGCTGG+AGG - Chr8:118410-118429 MsG0880041843.01.T01:intron 60.0%
! CTTTGGGAGGAGGGAAGGAG+AGG - Chr8:118702-118721 MsG0880041843.01.T01:intron 60.0%
GGTCAGGTACGGAAGAGCCC+AGG + Chr8:122208-122227 None:intergenic 65.0%
!! GAGGGCTTTGGGAGGAGGGA+AGG - Chr8:118697-118716 MsG0880041843.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 117467 125187 117467 ID=MsG0880041843.01;Name=MsG0880041843.01
Chr8 mRNA 117467 125187 117467 ID=MsG0880041843.01.T01;Parent=MsG0880041843.01;Name=MsG0880041843.01.T01;_AED=0.40;_eAED=0.41;_QI=186|0.62|0.88|1|0.75|0.55|9|349|378
Chr8 exon 125038 125187 125038 ID=MsG0880041843.01.T01:exon:215;Parent=MsG0880041843.01.T01
Chr8 exon 124197 124315 124197 ID=MsG0880041843.01.T01:exon:216;Parent=MsG0880041843.01.T01
Chr8 exon 122854 123243 122854 ID=MsG0880041843.01.T01:exon:217;Parent=MsG0880041843.01.T01
Chr8 exon 121808 121918 121808 ID=MsG0880041843.01.T01:exon:218;Parent=MsG0880041843.01.T01
Chr8 exon 121431 121551 121431 ID=MsG0880041843.01.T01:exon:219;Parent=MsG0880041843.01.T01
Chr8 exon 120121 120198 120121 ID=MsG0880041843.01.T01:exon:220;Parent=MsG0880041843.01.T01
Chr8 exon 118149 118382 118149 ID=MsG0880041843.01.T01:exon:221;Parent=MsG0880041843.01.T01
Chr8 exon 117824 118061 117824 ID=MsG0880041843.01.T01:exon:222;Parent=MsG0880041843.01.T01
Chr8 exon 117467 117697 117467 ID=MsG0880041843.01.T01:exon:223;Parent=MsG0880041843.01.T01
Chr8 five_prime_UTR 125038 125187 125038 ID=MsG0880041843.01.T01:five_prime_utr;Parent=MsG0880041843.01.T01
Chr8 five_prime_UTR 124280 124315 124280 ID=MsG0880041843.01.T01:five_prime_utr;Parent=MsG0880041843.01.T01
Chr8 CDS 124197 124279 124197 ID=MsG0880041843.01.T01:cds;Parent=MsG0880041843.01.T01
Chr8 CDS 122854 123243 122854 ID=MsG0880041843.01.T01:cds;Parent=MsG0880041843.01.T01
Chr8 CDS 121808 121918 121808 ID=MsG0880041843.01.T01:cds;Parent=MsG0880041843.01.T01
Chr8 CDS 121431 121551 121431 ID=MsG0880041843.01.T01:cds;Parent=MsG0880041843.01.T01
Chr8 CDS 120121 120198 120121 ID=MsG0880041843.01.T01:cds;Parent=MsG0880041843.01.T01
Chr8 CDS 118149 118382 118149 ID=MsG0880041843.01.T01:cds;Parent=MsG0880041843.01.T01
Chr8 CDS 117942 118061 117942 ID=MsG0880041843.01.T01:cds;Parent=MsG0880041843.01.T01
Chr8 three_prime_UTR 117824 117941 117824 ID=MsG0880041843.01.T01:three_prime_utr;Parent=MsG0880041843.01.T01
Chr8 three_prime_UTR 117467 117697 117467 ID=MsG0880041843.01.T01:three_prime_utr;Parent=MsG0880041843.01.T01
Gene Sequence

>MsG0880041843.01.T01

ATGAATGAAGAGTCTAATTCTTATGGAAATGCTACGGGTCTCTTGCATCAGCTGGAGGATATTCTCGAGTCTGATGCTCTAATTGATGAGCTGGGGTTTATTCATCCATCCCAGTTTTCATTGTTAAATGAAGAATCTGGCATTTCGGCTAATTTATCTGATGAACCCGTCCATCAATCAGCAAACAGGGCAGCAAGCTCTGACAAATATTCCAAACAAGAGAAACTATACTTTTGGAACAGAGATCATAAATTGGGAATTTCAACTCATGTTCTTATACCGTTATATAGAGCTGCTAAACATGCATTTATGACGGCGTTTAAACAATACAAGATGGGTGACAATCATTCCGACAACATTGAACTTTGTTTACCTCCTTCAGTATCCCATGACCATCTTGAAAGCATACTTTTGAGACACAGCAGGTCTCTTCTACTGCTAAGCTGTGACTTTATGACTGCTTGGAATTGCAGAAAGTTATTAGTGTCTAAGAAGAAGCAGGTCTCAATGTTTGTAGATGAACTTCTACTGTCAGAACTTGTGCTCTCATGCTCACCCAAAAGTGAACAAGCTTGGAGTCATAGGCATCTAACGCATACAAGTATTTTATCTAGGCGATGGGTGATCAAGTCAATATCTGCAAACTGTTCAAATTTCAAAGAGATTTTGGGGAAAGAATCTGAGCTTGTGGAAAAAATAGCCGAGGTGCTATCTGAGTTGAAGAAATCCAGAAGTTGGGCTGCACTGCATGTTGCTGATAATTGCTGCTTTCATTATCGCAGAGCTCTATGGCTTCATCGTCGCTTTCTTTCCACGTGCTGGATAAATAATTTTCTAACTGATTCTAGTGACGGATCCGACCATTCCAAGGAGGAAGCTAGCATGTTTCATGACTTTGGCACCTTTCTGCAGAATGAATTATGTCTCCTTCACACCTCGACTTTTGCTGATGACGATTATGGGGATTTCCAAGCACAAGCCACATATTCTGCTAGTTACATACTTTGGTTGAAAGTGCAAGTGCCCAAGCCTCTTGGAAATGAACTCCTTGAGAAGATAAGAGATGTAGATTTGAAGACCTTATTGGATAAGTCATGCCCTGAGAAATCTTCTCTATTTAAATACTTTTTGAGCTAG
Protein sequence

>MsG0880041843.01.T01

MNEESNSYGNATGLLHQLEDILESDALIDELGFIHPSQFSLLNEESGISANLSDEPVHQSANRAASSDKYSKQEKLYFWNRDHKLGISTHVLIPLYRAAKHAFMTAFKQYKMGDNHSDNIELCLPPSVSHDHLESILLRHSRSLLLLSCDFMTAWNCRKLLVSKKKQVSMFVDELLLSELVLSCSPKSEQAWSHRHLTHTSILSRRWVIKSISANCSNFKEILGKESELVEKIAEVLSELKKSRSWAALHVADNCCFHYRRALWLHRRFLSTCWINNFLTDSSDGSDHSKEEASMFHDFGTFLQNELCLLHTSTFADDDYGDFQAQATYSASYILWLKVQVPKPLGNELLEKIRDVDLKTLLDKSCPEKSSLFKYFLS*