AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023707.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023707.01.T01 MTR_8g099650 93.143 175 6 1 1 175 1 169 1.26e-96 277
MsG0480023707.01.T01 MTR_8g099650 91.781 146 6 1 1 146 1 140 1.08e-74 220
MsG0480023707.01.T01 MTR_3g096690 49.296 71 35 1 101 171 37 106 1.47e-19 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023707.01.T01 AT4G10920 51.852 162 69 3 14 175 13 165 3.23e-49 157
MsG0480023707.01.T01 AT4G10920 51.852 162 69 3 14 175 13 165 3.23e-49 157
MsG0480023707.01.T01 AT5G09250 44.928 69 38 0 101 169 36 104 1.55e-19 79.3
MsG0480023707.01.T01 AT5G09250 46.032 63 34 0 106 168 44 106 3.50e-16 70.9
MsG0480023707.01.T01 AT5G09250 32.632 95 59 1 61 155 1 90 3.00e-15 68.6
MsG0480023707.01.T01 AT4G00980 31.138 167 98 3 9 175 19 168 1.09e-14 71.2
MsG0480023707.01.T01 AT5G09240 42.424 66 36 1 105 168 39 104 4.10e-13 62.8
MsG0480023707.01.T01 AT5G09250 47.826 46 24 0 101 146 36 81 3.09e-12 60.1
MsG0480023707.01.T01 AT5G09250 47.826 46 24 0 101 146 36 81 3.09e-12 60.1

Find 51 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTGAGCTCACTGGTTCTTT+TGG 0.249585 4:-88803739 None:intergenic
AGAACAAGCCATTCAGAAAA+AGG 0.298415 4:+88806587 MsG0480023707.01.T01:CDS
TTCGATTCTTCCTTTGGTTT+CGG 0.299411 4:-88803782 None:intergenic
TGAGGCTTGCTTTCGAATCT+TGG 0.308290 4:-88803857 None:intergenic
TGTTTCTTCGATTCTTCCTT+TGG 0.317008 4:-88803788 None:intergenic
TAATCATACAAATTTCTTAT+CGG 0.321341 4:-88806956 None:intergenic
CGTCCATGTTTGATTCTTGA+AGG 0.351225 4:-88803822 None:intergenic
AAAGAGAAAGGTGACAATTC+AGG 0.366183 4:+88804227 MsG0480023707.01.T01:CDS
CATCACAGAGAATTAATATA+TGG 0.371485 4:-88806915 None:intergenic
AAAGCAAGCCTCAAATGAAT+TGG 0.387647 4:+88803867 MsG0480023707.01.T01:CDS
TGGAGAAAGGGGTTAGTAAA+GGG 0.388548 4:-88803719 None:intergenic
AGCACTGTTTATGATGATTC+CGG 0.391789 4:+88804060 MsG0480023707.01.T01:CDS
CTTGGTATAAAACTCTCTAA+TGG 0.394017 4:-88804274 None:intergenic
AAAGAACTTCCTTCTTCTAA+AGG 0.401625 4:+88804303 MsG0480023707.01.T01:CDS
TTCTCTGTGATGGTTGTGTT+TGG 0.401840 4:+88806926 MsG0480023707.01.T01:three_prime_UTR
TGAATGGCTTGTTCTATGTC+AGG 0.401909 4:-88806579 None:intergenic
TTGCTTTCGAATCTTGGATT+CGG 0.412374 4:-88803851 None:intergenic
AGGAAGTTCTTTGCCATCCT+TGG 0.414306 4:-88804292 None:intergenic
CTTTGAAGGGAGGCTGAGAT+AGG 0.417924 4:-88803897 None:intergenic
ATTTCAAGTCCTGAACAAAA+TGG 0.421684 4:-88806783 None:intergenic
TTGCTTGACGAAGGCTTTGA+AGG 0.429051 4:-88803911 None:intergenic
TGAATACTTCAACCTGCATA+TGG 0.452162 4:-88806638 None:intergenic
AGAAGAAGAAGAGAAACAAC+AGG 0.454315 4:+88804011 MsG0480023707.01.T01:CDS
TTGGAGAAAGGGGTTAGTAA+AGG 0.455445 4:-88803720 None:intergenic
ACAACTTTACCTTTAGAAGA+AGG 0.476393 4:-88804312 None:intergenic
TTTGTTCAGTGTAGTGCAGC+TGG 0.477037 4:+88806821 MsG0480023707.01.T01:three_prime_UTR
GCAGCAAGAACAACAGAAAG+AGG 0.479297 4:+88803960 MsG0480023707.01.T01:CDS
GTTAAGATCCAATTCATTTG+AGG 0.479566 4:-88803875 None:intergenic
CATATATTAATTCTCTGTGA+TGG 0.488772 4:+88806916 MsG0480023707.01.T01:three_prime_UTR
GTGACAATTCAGGATTTCAA+AGG 0.497487 4:+88804237 MsG0480023707.01.T01:CDS
GCAGCTGGAGTAGAATTTGT+AGG 0.500031 4:+88806836 MsG0480023707.01.T01:three_prime_UTR
TGACAATTCAGGATTTCAAA+GGG 0.528976 4:+88804238 MsG0480023707.01.T01:CDS
TTCAGGAATAAGTTTGACTC+AGG 0.531614 4:+88806527 MsG0480023707.01.T01:intron
TCAAGTATCACCACATCACT+TGG 0.535742 4:-88806680 None:intergenic
TTCGATGATTTGCTTGACGA+AGG 0.545920 4:-88803920 None:intergenic
TTTGACACAGCTGAGCTCAC+TGG 0.548836 4:-88803748 None:intergenic
TGCTTGACGAAGGCTTTGAA+GGG 0.552385 4:-88803910 None:intergenic
ACGAGATGACTTCCATATGC+AGG 0.564861 4:+88806626 MsG0480023707.01.T01:three_prime_UTR
GAAACAACAGGTTAAACAAG+AGG 0.566821 4:+88804023 MsG0480023707.01.T01:CDS
TTGACGAAGGCTTTGAAGGG+AGG 0.568942 4:-88803907 None:intergenic
ACAGAGAATTAATATATGGA+AGG 0.591935 4:-88806911 None:intergenic
ATGGATGACGCCGAAACCAA+AGG 0.594413 4:+88803772 MsG0480023707.01.T01:CDS
CTCGCAGATGACTAGATCAC+CGG 0.601997 4:-88804079 None:intergenic
TAAGTTTGACTCAGGAGCAG+TGG 0.602755 4:+88806535 MsG0480023707.01.T01:CDS
AAACAACAGGTTAAACAAGA+GGG 0.617440 4:+88804024 MsG0480023707.01.T01:CDS
CTTATGATTGCCAAGTGATG+TGG 0.624237 4:+88806670 MsG0480023707.01.T01:three_prime_UTR
AGTCCTGAACAAAATGGTCG+AGG 0.628397 4:-88806777 None:intergenic
TTGTAGGAAAACTCTAGAGG+AGG 0.645810 4:+88806852 MsG0480023707.01.T01:three_prime_UTR
GATCCTTCAAGAATCAAACA+TGG 0.657064 4:+88803819 MsG0480023707.01.T01:CDS
AATTTGTAGGAAAACTCTAG+AGG 0.680085 4:+88806849 MsG0480023707.01.T01:three_prime_UTR
CGGTGATCTAGTCATCTGCG+AGG 0.722262 4:+88804080 MsG0480023707.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAATTTGAAAATGATAA+AGG + Chr4:88805272-88805291 MsG0480023707.01.T01:intron 10.0%
!! AATGTTTCTTAGATATTAAA+TGG - Chr4:88805738-88805757 None:intergenic 15.0%
!! GTCATATTATATAAAAGAAA+TGG - Chr4:88804713-88804732 None:intergenic 15.0%
!! TAATCATACAAATTTCTTAT+CGG - Chr4:88806959-88806978 None:intergenic 15.0%
!! TCATATATAATTTAGCAAAT+AGG + Chr4:88806170-88806189 MsG0480023707.01.T01:intron 15.0%
!! TTAATATCTAAGAAACATTA+GGG + Chr4:88805739-88805758 MsG0480023707.01.T01:intron 15.0%
!! TTCATACAAAAAAAAAATCA+TGG - Chr4:88805182-88805201 None:intergenic 15.0%
!! TTCTACCTATTTATAATAAA+AGG - Chr4:88805249-88805268 None:intergenic 15.0%
!! TTTAATATCTAAGAAACATT+AGG + Chr4:88805738-88805757 MsG0480023707.01.T01:intron 15.0%
!!! AAACACCTTTTATTATAAAT+AGG + Chr4:88805241-88805260 MsG0480023707.01.T01:intron 15.0%
!!! AAGTATATCTACTTTTAATA+TGG + Chr4:88805529-88805548 MsG0480023707.01.T01:intron 15.0%
!! AAAGAAAAAAAACATGAGTA+TGG + Chr4:88805420-88805439 MsG0480023707.01.T01:intron 20.0%
!! AGACTAATTGATAGAAATTA+TGG - Chr4:88804374-88804393 None:intergenic 20.0%
!! ATTTCGATTCAAATGTTTAT+TGG + Chr4:88806346-88806365 MsG0480023707.01.T01:intron 20.0%
!! GAAACACAAAAATTAGAATT+TGG - Chr4:88806510-88806529 None:intergenic 20.0%
!! TGTGCAAGTTAATAATAATT+TGG - Chr4:88804580-88804599 None:intergenic 20.0%
!!! AATGCAGTTTTGAATAAATA+GGG - Chr4:88804913-88804932 None:intergenic 20.0%
!!! AATTCTAATTTTTGTGTTTC+AGG + Chr4:88806510-88806529 MsG0480023707.01.T01:intron 20.0%
!!! ATAATATGACATTGATTTTC+AGG + Chr4:88804723-88804742 MsG0480023707.01.T01:intron 20.0%
!!! ATCTACTTTTAATATGGTAT+TGG + Chr4:88805535-88805554 MsG0480023707.01.T01:intron 20.0%
!!! ATTTTAATGCCAAACTTAAA+AGG - Chr4:88806019-88806038 None:intergenic 20.0%
!!! GAAAATTGTTGTTAAAAAAG+CGG - Chr4:88803686-88803705 None:intergenic 20.0%
!!! GCTAATTAGCTTAAATTTAA+CGG - Chr4:88804440-88804459 None:intergenic 20.0%
!!! GTTTTATCTATAACTTTTCA+CGG - Chr4:88806315-88806334 None:intergenic 20.0%
!!! TAAGTTCTAACTAGTAAAAT+TGG - Chr4:88805945-88805964 None:intergenic 20.0%
! AATCTATACAGTTTGAACTT+TGG + Chr4:88805660-88805679 MsG0480023707.01.T01:intron 25.0%
! ACAGAGAATTAATATATGGA+AGG - Chr4:88806914-88806933 None:intergenic 25.0%
! ACTACTCATACTATCATATA+GGG - Chr4:88806099-88806118 None:intergenic 25.0%
! AGATTTCATCTTTCATTCTA+AGG - Chr4:88804557-88804576 None:intergenic 25.0%
! ATAGTTACGTTCTATAATTG+AGG + Chr4:88806477-88806496 MsG0480023707.01.T01:intron 25.0%
! ATTAGGGTTCAAAATAAGTT+GGG + Chr4:88805755-88805774 MsG0480023707.01.T01:intron 25.0%
! ATTTCTTGACAATAGAACTT+AGG - Chr4:88804612-88804631 None:intergenic 25.0%
! CATATATTAATTCTCTGTGA+TGG + Chr4:88806916-88806935 MsG0480023707.01.T01:three_prime_UTR 25.0%
! CATCACAGAGAATTAATATA+TGG - Chr4:88806918-88806937 None:intergenic 25.0%
! CCAAAATAATAATGTTAACC+AGG - Chr4:88804186-88804205 None:intergenic 25.0%
! GAGAGTAAAAAATTACGAAA+CGG - Chr4:88804107-88804126 None:intergenic 25.0%
! TAACGATGAAATCAATTCAT+GGG + Chr4:88804148-88804167 MsG0480023707.01.T01:intron 25.0%
! TACTACTCATACTATCATAT+AGG - Chr4:88806100-88806119 None:intergenic 25.0%
! TAGTTACGTTCTATAATTGA+GGG + Chr4:88806478-88806497 MsG0480023707.01.T01:intron 25.0%
! TCTTAATTAATACTCGATGT+GGG + Chr4:88805023-88805042 MsG0480023707.01.T01:intron 25.0%
! TGAACAGAGTTAAGTAATAT+TGG - Chr4:88805791-88805810 None:intergenic 25.0%
! TTAACGATGAAATCAATTCA+TGG + Chr4:88804147-88804166 MsG0480023707.01.T01:intron 25.0%
! TTATTCAAAACTGCATTCTA+AGG + Chr4:88804916-88804935 MsG0480023707.01.T01:intron 25.0%
! TTGTCAAGAAATATCAAGAT+TGG + Chr4:88804620-88804639 MsG0480023707.01.T01:intron 25.0%
!! AGTAGATATACTTGTGATTT+TGG - Chr4:88805522-88805541 None:intergenic 25.0%
!! ATTGGATTAGAAACAGTTAA+AGG + Chr4:88804638-88804657 MsG0480023707.01.T01:intron 25.0%
!! CCTGGTTAACATTATTATTT+TGG + Chr4:88804183-88804202 MsG0480023707.01.T01:intron 25.0%
!! GCTTATATGAACCTTTAAAA+AGG - Chr4:88805114-88805133 None:intergenic 25.0%
!! GCTTATTTAGTGCTAAATTT+TGG + Chr4:88806055-88806074 MsG0480023707.01.T01:intron 25.0%
!!! AAATGATAAAGGCATTGAAA+TGG + Chr4:88805283-88805302 MsG0480023707.01.T01:intron 25.0%
!!! GAATGCAGTTTTGAATAAAT+AGG - Chr4:88804914-88804933 None:intergenic 25.0%
AAACAACAGGTTAAACAAGA+GGG + Chr4:88804024-88804043 MsG0480023707.01.T01:CDS 30.0%
AAAGAACTTCCTTCTTCTAA+AGG + Chr4:88804303-88804322 MsG0480023707.01.T01:CDS 30.0%
AAATAGGGAATCTATGCAAT+TGG - Chr4:88804898-88804917 None:intergenic 30.0%
AAGTTCTTGAGTCACTAATT+TGG - Chr4:88805336-88805355 None:intergenic 30.0%
AATTTGTAGGAAAACTCTAG+AGG + Chr4:88806849-88806868 MsG0480023707.01.T01:three_prime_UTR 30.0%
ACCAAGAAATTCAGAAAAGA+TGG + Chr4:88806200-88806219 MsG0480023707.01.T01:intron 30.0%
AGAACAATAGAGAGAAGAAA+GGG + Chr4:88804834-88804853 MsG0480023707.01.T01:intron 30.0%
ATAACATGACTACATGAGTA+TGG + Chr4:88805387-88805406 MsG0480023707.01.T01:intron 30.0%
ATATTAAATGGAGCACAACA+AGG - Chr4:88805726-88805745 None:intergenic 30.0%
CACATCGAGTATTAATTAAG+AGG - Chr4:88805024-88805043 None:intergenic 30.0%
CATGATAAAAATTAGTCCAC+CGG + Chr4:88806272-88806291 MsG0480023707.01.T01:intron 30.0%
CATTAGGGTTCAAAATAAGT+TGG + Chr4:88805754-88805773 MsG0480023707.01.T01:intron 30.0%
CTACTCATACTATCATATAG+GGG - Chr4:88806098-88806117 None:intergenic 30.0%
CTCTTAATTAATACTCGATG+TGG + Chr4:88805022-88805041 MsG0480023707.01.T01:intron 30.0%
CTTGGTATAAAACTCTCTAA+TGG - Chr4:88804277-88804296 None:intergenic 30.0%
GAAATCAATTCATGGGAAAA+GGG + Chr4:88804155-88804174 MsG0480023707.01.T01:intron 30.0%
GACACGATGATCTATATATT+TGG + Chr4:88805361-88805380 MsG0480023707.01.T01:intron 30.0%
GGAAACATCTTATGAACTTA+TGG - Chr4:88804353-88804372 None:intergenic 30.0%
GTTAAGATCCAATTCATTTG+AGG - Chr4:88803878-88803897 None:intergenic 30.0%
GTTAAGTAATATTGGCAACA+AGG - Chr4:88805783-88805802 None:intergenic 30.0%
TAGTTAGAACTTAGATGTCT+CGG + Chr4:88805952-88805971 MsG0480023707.01.T01:intron 30.0%
TATTAAATGGAGCACAACAA+GGG - Chr4:88805725-88805744 None:intergenic 30.0%
TCTTAAAAGCTAGCTATCAA+GGG + Chr4:88804986-88805005 MsG0480023707.01.T01:intron 30.0%
TGAAATCAATTCATGGGAAA+AGG + Chr4:88804154-88804173 MsG0480023707.01.T01:intron 30.0%
TGAATCGAAATCTCTGTTAA+TGG - Chr4:88806337-88806356 None:intergenic 30.0%
TGACAATTCAGGATTTCAAA+GGG + Chr4:88804238-88804257 MsG0480023707.01.T01:CDS 30.0%
TTAAAAGGAAGTTCTCAACT+GGG - Chr4:88806004-88806023 None:intergenic 30.0%
TTAGGGTTCAAAATAAGTTG+GGG + Chr4:88805756-88805775 MsG0480023707.01.T01:intron 30.0%
TTCAGATTGTCATTGTTGAT+AGG - Chr4:88805156-88805175 None:intergenic 30.0%
! ACAACTTTACCTTTAGAAGA+AGG - Chr4:88804315-88804334 None:intergenic 30.0%
! ACCATCTTTTCTGAATTTCT+TGG - Chr4:88806204-88806223 None:intergenic 30.0%
! ATCATAAACAGTGCTTTTGT+TGG - Chr4:88804055-88804074 None:intergenic 30.0%
! ATTTCAAGTCCTGAACAAAA+TGG - Chr4:88806786-88806805 None:intergenic 30.0%
! GAATTGATTTCATCGTTAAC+CGG - Chr4:88804146-88804165 None:intergenic 30.0%
! TGAACCTTTAAAAAGGAACA+CGG - Chr4:88805107-88805126 None:intergenic 30.0%
!! CATTAGAGAGTTTTATACCA+AGG + Chr4:88804275-88804294 MsG0480023707.01.T01:CDS 30.0%
!!! AAGATGGTTAGTGTTGTTTT+AGG + Chr4:88806216-88806235 MsG0480023707.01.T01:intron 30.0%
!!! TGAGAACTTCCTTTTAAGTT+TGG + Chr4:88806007-88806026 MsG0480023707.01.T01:intron 30.0%
!!! TTTTAATATGGTATTGGCCT+TGG + Chr4:88805541-88805560 MsG0480023707.01.T01:intron 30.0%
AAAAAGGAGTCACGTGTATA+AGG + Chr4:88806603-88806622 MsG0480023707.01.T01:CDS 35.0%
AAAGAGAAAGGTGACAATTC+AGG + Chr4:88804227-88804246 MsG0480023707.01.T01:CDS 35.0%
AAAGCAAGCCTCAAATGAAT+TGG + Chr4:88803867-88803886 MsG0480023707.01.T01:CDS 35.0%
AAATTTAACGGCCAAGGATA+AGG - Chr4:88804428-88804447 None:intergenic 35.0%
AAGCTAATTAGCAAAAAGCG+AGG + Chr4:88804448-88804467 MsG0480023707.01.T01:intron 35.0%
AATTTAACGGCCAAGGATAA+GGG - Chr4:88804427-88804446 None:intergenic 35.0%
AGAACAAGCCATTCAGAAAA+AGG + Chr4:88806587-88806606 MsG0480023707.01.T01:CDS 35.0%
AGAAGAAGAAGAGAAACAAC+AGG + Chr4:88804011-88804030 MsG0480023707.01.T01:CDS 35.0%
AGCACTGTTTATGATGATTC+CGG + Chr4:88804060-88804079 MsG0480023707.01.T01:CDS 35.0%
ATAAAAATTAGTCCACCGGT+TGG + Chr4:88806276-88806295 MsG0480023707.01.T01:intron 35.0%
CAGAAAGAGGAAAAAGAAGA+AGG + Chr4:88803973-88803992 MsG0480023707.01.T01:CDS 35.0%
CATACTATCATATAGGGGAA+GGG - Chr4:88806093-88806112 None:intergenic 35.0%
CCACCTATAGTATATAACCA+AGG - Chr4:88805561-88805580 None:intergenic 35.0%
CCTTGGTTATATACTATAGG+TGG + Chr4:88805558-88805577 MsG0480023707.01.T01:intron 35.0%
CTCTTAAAAGCTAGCTATCA+AGG + Chr4:88804985-88805004 MsG0480023707.01.T01:intron 35.0%
CTTAAAAGCTAGCTATCAAG+GGG + Chr4:88804987-88805006 MsG0480023707.01.T01:intron 35.0%
CTTAAAAGGAAGTTCTCAAC+TGG - Chr4:88806005-88806024 None:intergenic 35.0%
GAAACAACAGGTTAAACAAG+AGG + Chr4:88804023-88804042 MsG0480023707.01.T01:CDS 35.0%
GAGAACAATAGAGAGAAGAA+AGG + Chr4:88804833-88804852 MsG0480023707.01.T01:intron 35.0%
GATCCTTCAAGAATCAAACA+TGG + Chr4:88803819-88803838 MsG0480023707.01.T01:CDS 35.0%
GTGACAATTCAGGATTTCAA+AGG + Chr4:88804237-88804256 MsG0480023707.01.T01:CDS 35.0%
TAGCATTTCTCATGGATGTT+TGG + Chr4:88805618-88805637 MsG0480023707.01.T01:intron 35.0%
TAGCTTAAATTTAACGGCCA+AGG - Chr4:88804434-88804453 None:intergenic 35.0%
TCAGCTTGGAAAAAAGAGAA+AGG + Chr4:88804215-88804234 MsG0480023707.01.T01:intron 35.0%
TCATACTATCATATAGGGGA+AGG - Chr4:88806094-88806113 None:intergenic 35.0%
TCGGATTAAGGATGTTGATA+GGG - Chr4:88805070-88805089 None:intergenic 35.0%
TCTCACTTTAGCATTTCTCA+TGG + Chr4:88805610-88805629 MsG0480023707.01.T01:intron 35.0%
TGAATACTTCAACCTGCATA+TGG - Chr4:88806641-88806660 None:intergenic 35.0%
TGGAATGTGACAGTTTACAT+TGG + Chr4:88804864-88804883 MsG0480023707.01.T01:intron 35.0%
TGTTTCTTCGATTCTTCCTT+TGG - Chr4:88803791-88803810 None:intergenic 35.0%
TTCAGGAATAAGTTTGACTC+AGG + Chr4:88806527-88806546 MsG0480023707.01.T01:intron 35.0%
TTCGGATTAAGGATGTTGAT+AGG - Chr4:88805071-88805090 None:intergenic 35.0%
TTGCTTTCGAATCTTGGATT+CGG - Chr4:88803854-88803873 None:intergenic 35.0%
! CAAACCGTGTTCCTTTTTAA+AGG + Chr4:88805100-88805119 MsG0480023707.01.T01:intron 35.0%
! CTGGCTTATTTCTCACAATA+GGG + Chr4:88804956-88804975 MsG0480023707.01.T01:intron 35.0%
! TAGGGTTCAAAATAAGTTGG+GGG + Chr4:88805757-88805776 MsG0480023707.01.T01:intron 35.0%
! TGGCCTTGGTTATATACTAT+AGG + Chr4:88805555-88805574 MsG0480023707.01.T01:intron 35.0%
! TTCGATTCTTCCTTTGGTTT+CGG - Chr4:88803785-88803804 None:intergenic 35.0%
!! AGAGAGTTTTATACCAAGGA+TGG + Chr4:88804279-88804298 MsG0480023707.01.T01:CDS 35.0%
!! TGTAGAAGCATTTCGGATTA+AGG - Chr4:88805082-88805101 None:intergenic 35.0%
!!! ATGGTTAGTGTTGTTTTAGG+TGG + Chr4:88806219-88806238 MsG0480023707.01.T01:intron 35.0%
!!! TTTGGTTTTGCATTTCAGCT+TGG + Chr4:88804201-88804220 MsG0480023707.01.T01:intron 35.0%
AGAGAAGAAAGGGATTTGAG+TGG + Chr4:88804844-88804863 MsG0480023707.01.T01:intron 40.0%
ATTAGCAAAAAGCGAGGCAA+CGG + Chr4:88804454-88804473 MsG0480023707.01.T01:intron 40.0%
CGTCCATGTTTGATTCTTGA+AGG - Chr4:88803825-88803844 None:intergenic 40.0%
CTTATGATTGCCAAGTGATG+TGG + Chr4:88806670-88806689 MsG0480023707.01.T01:three_prime_UTR 40.0%
GAGCTTTCATGATTCGTGTA+AGG - Chr4:88805833-88805852 None:intergenic 40.0%
GCCAAATTGATCTGCTTTGT+TGG + Chr4:88806138-88806157 MsG0480023707.01.T01:intron 40.0%
GCCAACAAAGCAGATCAATT+TGG - Chr4:88806142-88806161 None:intergenic 40.0%
GTAGTTATCGTTTCTGTCTG+AGG + Chr4:88805469-88805488 MsG0480023707.01.T01:intron 40.0%
TCAAGTATCACCACATCACT+TGG - Chr4:88806683-88806702 None:intergenic 40.0%
TCCAAACAAACCCTTATCCT+TGG + Chr4:88804414-88804433 MsG0480023707.01.T01:intron 40.0%
TTCTCTGTGATGGTTGTGTT+TGG + Chr4:88806926-88806945 MsG0480023707.01.T01:three_prime_UTR 40.0%
! ACGTGACTCCTTTTTCTGAA+TGG - Chr4:88806598-88806617 None:intergenic 40.0%
! CGGATTAAGGATGTTGATAG+GGG - Chr4:88805069-88805088 None:intergenic 40.0%
! GCTGGCTTATTTCTCACAAT+AGG + Chr4:88804955-88804974 MsG0480023707.01.T01:intron 40.0%
! GTCAGGCACAATTTTCTTGA+AGG - Chr4:88806565-88806584 None:intergenic 40.0%
! TGGAGAAAGGGGTTAGTAAA+GGG - Chr4:88803722-88803741 None:intergenic 40.0%
! TTGGAGAAAGGGGTTAGTAA+AGG - Chr4:88803723-88803742 None:intergenic 40.0%
! TTGTAGGAAAACTCTAGAGG+AGG + Chr4:88806852-88806871 MsG0480023707.01.T01:three_prime_UTR 40.0%
!! ACTGGTTCTTTTGGAGAAAG+GGG - Chr4:88803733-88803752 None:intergenic 40.0%
!! CACGGTTTGTAGAAGCATTT+CGG - Chr4:88805089-88805108 None:intergenic 40.0%
!! GATTTTCAGGAGACATCTGA+TGG + Chr4:88804736-88804755 MsG0480023707.01.T01:intron 40.0%
!! TGAATGGCTTGTTCTATGTC+AGG - Chr4:88806582-88806601 None:intergenic 40.0%
!! TTCGATGATTTGCTTGACGA+AGG - Chr4:88803923-88803942 None:intergenic 40.0%
!!! CACTGGTTCTTTTGGAGAAA+GGG - Chr4:88803734-88803753 None:intergenic 40.0%
!!! TCACTGGTTCTTTTGGAGAA+AGG - Chr4:88803735-88803754 None:intergenic 40.0%
ACGAGATGACTTCCATATGC+AGG + Chr4:88806626-88806645 MsG0480023707.01.T01:three_prime_UTR 45.0%
AGGAAGTTCTTTGCCATCCT+TGG - Chr4:88804295-88804314 None:intergenic 45.0%
AGGAGACATCTGATGGAAAC+TGG + Chr4:88804743-88804762 MsG0480023707.01.T01:intron 45.0%
AGGGAATCTATGCAATTGGC+AGG - Chr4:88804894-88804913 None:intergenic 45.0%
AGTCCTGAACAAAATGGTCG+AGG - Chr4:88806780-88806799 None:intergenic 45.0%
ATACAACCAACTCCGTGTAG+TGG + Chr4:88806420-88806439 MsG0480023707.01.T01:intron 45.0%
CATGGGAAAAGGGTTATTCC+TGG + Chr4:88804165-88804184 MsG0480023707.01.T01:intron 45.0%
CTATGCTTTCTCCCACTACA+CGG - Chr4:88806435-88806454 None:intergenic 45.0%
GAGCTCAGCTGTGTCAAAAA+TGG + Chr4:88803753-88803772 MsG0480023707.01.T01:exon 45.0%
GCAGCAAGAACAACAGAAAG+AGG + Chr4:88803960-88803979 MsG0480023707.01.T01:CDS 45.0%
GCAGCTGGAGTAGAATTTGT+AGG + Chr4:88806836-88806855 MsG0480023707.01.T01:three_prime_UTR 45.0%
GCTATCAAGGGGTAAGAAAC+AGG + Chr4:88804998-88805017 MsG0480023707.01.T01:intron 45.0%
GCTCAAGAGTCATGAGAAGA+AGG + Chr4:88805205-88805224 MsG0480023707.01.T01:intron 45.0%
GGGAATCTATGCAATTGGCA+GGG - Chr4:88804893-88804912 None:intergenic 45.0%
TAAGTTTGACTCAGGAGCAG+TGG + Chr4:88806535-88806554 MsG0480023707.01.T01:CDS 45.0%
TACAACCAACTCCGTGTAGT+GGG + Chr4:88806421-88806440 MsG0480023707.01.T01:intron 45.0%
TTTGTTCAGTGTAGTGCAGC+TGG + Chr4:88806821-88806840 MsG0480023707.01.T01:three_prime_UTR 45.0%
! GCCAAGGATAAGGGTTTGTT+TGG - Chr4:88804418-88804437 None:intergenic 45.0%
! GTACCTCGACCATTTTGTTC+AGG + Chr4:88806774-88806793 MsG0480023707.01.T01:three_prime_UTR 45.0%
! TGAGGCTTGCTTTCGAATCT+TGG - Chr4:88803860-88803879 None:intergenic 45.0%
! TTAAGGATGTTGATAGGGGC+CGG - Chr4:88805065-88805084 None:intergenic 45.0%
! TTGCTTGACGAAGGCTTTGA+AGG - Chr4:88803914-88803933 None:intergenic 45.0%
!! TGCTTGACGAAGGCTTTGAA+GGG - Chr4:88803913-88803932 None:intergenic 45.0%
!!! TTTTTTTTTTTTTTTTTCAT+TGG + Chr4:88805890-88805909 MsG0480023707.01.T01:intron 5.0%
AGATGTCTCGGCGTTGCAAT+TGG + Chr4:88805964-88805983 MsG0480023707.01.T01:intron 50.0%
ATGGATGACGCCGAAACCAA+AGG + Chr4:88803772-88803791 MsG0480023707.01.T01:CDS 50.0%
CTCGCAGATGACTAGATCAC+CGG - Chr4:88804082-88804101 None:intergenic 50.0%
GGCACAACTATGACACAAGC+TGG + Chr4:88804937-88804956 MsG0480023707.01.T01:intron 50.0%
GGTATCCACCTAACTCCAAC+CGG - Chr4:88806294-88806313 None:intergenic 50.0%
TAGGTGGTCTGTGCATACAG+CGG + Chr4:88806235-88806254 MsG0480023707.01.T01:intron 50.0%
TTGATAGGGGCCGGTATTGT+GGG - Chr4:88805056-88805075 None:intergenic 50.0%
TTTCTCCCACTACACGGAGT+TGG - Chr4:88806429-88806448 None:intergenic 50.0%
TTTGACACAGCTGAGCTCAC+TGG - Chr4:88803751-88803770 None:intergenic 50.0%
! CTTTGAAGGGAGGCTGAGAT+AGG - Chr4:88803900-88803919 None:intergenic 50.0%
! TTAGTCCACCGGTTGGAGTT+AGG + Chr4:88806283-88806302 MsG0480023707.01.T01:intron 50.0%
!! TTGACGAAGGCTTTGAAGGG+AGG - Chr4:88803910-88803929 None:intergenic 50.0%
!!! GCTGAGCTCACTGGTTCTTT+TGG - Chr4:88803742-88803761 None:intergenic 50.0%
ATCCACCTAACTCCAACCGG+TGG - Chr4:88806291-88806310 None:intergenic 55.0%
CGGTGATCTAGTCATCTGCG+AGG + Chr4:88804080-88804099 MsG0480023707.01.T01:CDS 55.0%
CTCTTTCGCACGCACTTCAC+CGG + Chr4:88804124-88804143 MsG0480023707.01.T01:intron 55.0%
GGGACTTGACCCCACAATAC+CGG + Chr4:88805043-88805062 MsG0480023707.01.T01:intron 55.0%
TGATAGGGGCCGGTATTGTG+GGG - Chr4:88805055-88805074 None:intergenic 55.0%
! GTTGATAGGGGCCGGTATTG+TGG - Chr4:88805057-88805076 None:intergenic 55.0%
! GTCCACCGGTTGGAGTTAGG+TGG + Chr4:88806286-88806305 MsG0480023707.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 88803678 88807027 88803678 ID=MsG0480023707.01;Name=MsG0480023707.01
Chr4 mRNA 88803678 88807027 88803678 ID=MsG0480023707.01.T01;Parent=MsG0480023707.01;Name=MsG0480023707.01.T01;_AED=0.50;_eAED=0.50;_QI=94|1|1|1|1|1|3|404|175
Chr4 exon 88803678 88804101 88803678 ID=MsG0480023707.01.T01:exon:12997;Parent=MsG0480023707.01.T01
Chr4 exon 88804219 88804324 88804219 ID=MsG0480023707.01.T01:exon:12998;Parent=MsG0480023707.01.T01
Chr4 exon 88806532 88807027 88806532 ID=MsG0480023707.01.T01:exon:12999;Parent=MsG0480023707.01.T01
Chr4 five_prime_UTR 88803678 88803771 88803678 ID=MsG0480023707.01.T01:five_prime_utr;Parent=MsG0480023707.01.T01
Chr4 CDS 88803772 88804101 88803772 ID=MsG0480023707.01.T01:cds;Parent=MsG0480023707.01.T01
Chr4 CDS 88804219 88804324 88804219 ID=MsG0480023707.01.T01:cds;Parent=MsG0480023707.01.T01
Chr4 CDS 88806532 88806623 88806532 ID=MsG0480023707.01.T01:cds;Parent=MsG0480023707.01.T01
Chr4 three_prime_UTR 88806624 88807027 88806624 ID=MsG0480023707.01.T01:three_prime_utr;Parent=MsG0480023707.01.T01
Gene Sequence

>MsG0480023707.01.T01

ATGGATGACGCCGAAACCAAAGGAAGAATCGAAGAAACAGTTTTGAAGATCCTTCAAGAATCAAACATGGACGACGTCACCGAATCCAAGATTCGAAAGCAAGCCTCAAATGAATTGGATCTTAACCTATCTCAGCCTCCCTTCAAAGCCTTCGTCAAGCAAATCATCGAAGCTTTTCTTATACAGAAGCAGCAAGAACAACAGAAAGAGGAAAAAGAAGAAGGCGAAGAAGAAGAAGAAGAAGAAGAAGAGAAACAACAGGTTAAACAAGAGGGAGCTTCCAACAAAAGCACTGTTTATGATGATTCCGGTGATCTAGTCATCTGCGAGCTTGGAAAAAAGAGAAAGGTGACAATTCAGGATTTCAAAGGGAGAACATTTGTCTCCATTAGAGAGTTTTATACCAAGGATGGCAAAGAACTTCCTTCTTCTAAAGGAATAAGTTTGACTCAGGAGCAGTGGTTAGCCTTCAAGAAAATTGTGCCTGACATAGAACAAGCCATTCAGAAAAAGGAGTCACGTGTATAA

Protein sequence

>MsG0480023707.01.T01

MDDAETKGRIEETVLKILQESNMDDVTESKIRKQASNELDLNLSQPPFKAFVKQIIEAFLIQKQQEQQKEEKEEGEEEEEEEEEKQQVKQEGASNKSTVYDDSGDLVICELGKKRKVTIQDFKGRTFVSIREFYTKDGKELPSSKGISLTQEQWLAFKKIVPDIEQAIQKKESRV*