AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014139.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014139.01.T01 MTR_3g051300 91.950 323 26 0 57 379 452 774 0.0 569
MsG0380014139.01.T01 MTR_5g092570 51.672 329 139 4 57 378 458 773 2.90e-97 306
MsG0380014139.01.T01 MTR_2g102180 37.870 338 173 5 48 349 450 786 6.39e-56 197
MsG0380014139.01.T01 MTR_4g012050 36.923 325 172 5 57 349 463 786 1.84e-48 176
MsG0380014139.01.T01 MTR_3g081170 22.741 343 213 7 51 348 495 830 1.45e-18 88.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014139.01.T01 AT1G11660 46.032 315 151 3 57 366 422 722 4.61e-78 254
MsG0380014139.01.T01 AT1G11660 46.032 315 151 3 57 366 459 759 7.17e-78 255
MsG0380014139.01.T01 AT1G11660 46.032 315 151 3 57 366 459 759 7.17e-78 255
MsG0380014139.01.T01 AT1G11660 46.032 315 151 3 57 366 459 759 7.17e-78 255
MsG0380014139.01.T01 AT1G79930 36.494 348 188 5 57 372 463 809 1.40e-61 212
MsG0380014139.01.T01 AT1G79930 37.224 317 167 4 57 342 463 778 1.23e-57 201
MsG0380014139.01.T01 AT1G79920 32.609 184 99 4 57 216 463 645 3.44e-20 92.8
MsG0380014139.01.T01 AT4G16660 27.410 332 202 8 78 372 547 876 5.26e-20 92.4
MsG0380014139.01.T01 AT4G16660 27.410 332 202 8 78 372 523 852 6.42e-20 92.0
MsG0380014139.01.T01 AT1G79920 32.609 184 99 4 57 216 463 645 2.88e-19 90.1
MsG0380014139.01.T01 AT1G79920 32.609 184 99 4 57 216 463 645 2.88e-19 90.1
MsG0380014139.01.T01 AT1G79920 32.609 184 99 4 57 216 463 645 2.88e-19 90.1

Find 73 sgRNAs with CRISPR-Local

Find 379 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATATTGGGTCGACATTCTT+AGG 0.196299 3:-50285814 None:intergenic
TTGTGGAGAATCACGCTTAT+TGG 0.246669 3:-50283548 None:intergenic
ATATGACTTGACCATAATAT+TGG 0.250150 3:-50285829 None:intergenic
CTCTGTCCTGTTGAGCTAAC+TGG 0.311382 3:-50284163 None:intergenic
CTATCTGAGGTCTCGGACTT+AGG 0.323825 3:-50283490 None:intergenic
AAAACTAGAAGATCTGAAAA+AGG 0.347739 3:+50285441 MsG0380014139.01.T01:CDS
AGCGCCATTGGCAACAGAAT+TGG 0.380177 3:-50283515 None:intergenic
TTCGTCTTCTGAAGTTGGCT+TGG 0.388671 3:-50288030 None:intergenic
TATGACTTGACCATAATATT+GGG 0.389242 3:-50285828 None:intergenic
GCGCAATAGAGGAGCTAAAC+AGG 0.389650 3:+50285857 MsG0380014139.01.T01:CDS
AGAACTCCAGTTAGCTCAAC+AGG 0.394053 3:+50284157 MsG0380014139.01.T01:CDS
AGAATGTCGACCCAATATTA+TGG 0.406352 3:+50285818 MsG0380014139.01.T01:CDS
TCATCTTCGTCTTCTGAAGT+TGG 0.420209 3:-50288035 None:intergenic
TCTTTGTACCGAATCTCAAT+TGG 0.423825 3:-50285544 None:intergenic
GACTGAGGATTGGCTTTATG+AGG 0.428957 3:+50285384 MsG0380014139.01.T01:CDS
AAATTCTCATTCACTGCAAT+AGG 0.439271 3:-50284089 None:intergenic
AGAATCCTTGGAGGAACAAA+TGG 0.444352 3:-50288289 None:intergenic
TCAATGTATTCACGAATGAT+TGG 0.445141 3:-50288105 None:intergenic
GAGTCGAACCGAGTTGAACT+TGG 0.455626 3:+50282329 MsG0380014139.01.T01:CDS
GCAGTGAATGAGAATTTCTA+TGG 0.456214 3:+50284095 MsG0380014139.01.T01:CDS
TCATATTAAGAGCGCAATAG+AGG 0.458464 3:+50285846 MsG0380014139.01.T01:CDS
AACCGAGTTGAACTTGGGTT+CGG 0.458855 3:+50282335 MsG0380014139.01.T01:CDS
AACAGCTCTTCAACACATAT+CGG 0.473623 3:+50285311 MsG0380014139.01.T01:intron
AAGAGAGGGATGTCATATCT+AGG 0.475264 3:+50285350 MsG0380014139.01.T01:CDS
TGTGTGGCTTCAGTTGATCA+AGG 0.477113 3:+50283420 MsG0380014139.01.T01:intron
GGTACTATCTTCAGCGCCAT+TGG 0.480640 3:-50283527 None:intergenic
TCAAATATGTTATGCCTAAG+TGG 0.491052 3:+50288377 MsG0380014139.01.T01:three_prime_UTR
GCATGGATCTCAAGGTAGTA+AGG 0.492874 3:+50283256 MsG0380014139.01.T01:CDS
TTTCAGATCGGTCCTATGCA+TGG 0.498893 3:+50283239 MsG0380014139.01.T01:CDS
ATTGGTACTATCTGAGGTCT+CGG 0.498902 3:-50283497 None:intergenic
ATTCAAGCTCGCGAACAACT+AGG 0.503669 3:+50282444 MsG0380014139.01.T01:CDS
TAGATATGACATCCCTCTCT+TGG 0.505654 3:-50285348 None:intergenic
ACAGTACTTACATAACTTTG+TGG 0.511678 3:-50283565 None:intergenic
TGGTGGATCCAATTGAGATT+CGG 0.522302 3:+50285536 MsG0380014139.01.T01:CDS
TTCAAATCTGAGAGCAGATG+AGG 0.536521 3:-50288231 None:intergenic
TGTCTATGAGACGAGGAGTA+AGG 0.539018 3:+50284229 MsG0380014139.01.T01:CDS
GACAACCATTTGTTCCTCCA+AGG 0.546064 3:+50288284 MsG0380014139.01.T01:three_prime_UTR
AAAATCTCTAGAATCCTTGG+AGG 0.551580 3:-50288298 None:intergenic
GTTTGCAAGAGACTGAGGAT+TGG 0.563246 3:+50285374 MsG0380014139.01.T01:CDS
AGTCGAACCGAGTTGAACTT+GGG 0.567488 3:+50282330 MsG0380014139.01.T01:CDS
ATCTGAGAGCAGATGAGGGG+GGG 0.574583 3:-50288226 None:intergenic
GAAAAGATAAGGCGAACAGA+AGG 0.576632 3:+50284063 MsG0380014139.01.T01:CDS
AGATTGTCTAAGAAAAGATA+AGG 0.579423 3:+50284052 MsG0380014139.01.T01:CDS
TTAGCAATGAAGCAGAGCAT+TGG 0.581229 3:+50285758 MsG0380014139.01.T01:CDS
AGAGCATTGGCTAACAGAGA+AGG 0.581697 3:+50285771 MsG0380014139.01.T01:CDS
AGTTGAACTTGGGTTCGGCT+CGG 0.584515 3:+50282340 MsG0380014139.01.T01:CDS
GGTCCTATGCATGGATCTCA+AGG 0.585543 3:+50283248 MsG0380014139.01.T01:CDS
AATTGAATCAGCTCGAAACT+CGG 0.585660 3:+50282377 MsG0380014139.01.T01:CDS
CGAAGATGACAAAGACAAGA+TGG 0.587854 3:+50288076 MsG0380014139.01.T01:CDS
AACAGAATTGGTACTATCTG+AGG 0.592528 3:-50283503 None:intergenic
TCAAATCTGAGAGCAGATGA+GGG 0.593380 3:-50288230 None:intergenic
ACTCCTCGTCTCATAGACAT+AGG 0.598057 3:-50284225 None:intergenic
AGCTCAACAGGACAGAGCTG+TGG 0.600190 3:+50284169 MsG0380014139.01.T01:CDS
AAATCTGAGAGCAGATGAGG+GGG 0.601304 3:-50288228 None:intergenic
CTCATAGACATAGGACTCCA+AGG 0.602157 3:-50284216 None:intergenic
GCTTTGCTAGTGACCAAGAG+AGG 0.604732 3:+50285335 MsG0380014139.01.T01:CDS
CAAAGAAAAGAAGAACACCT+TGG 0.609634 3:+50284199 MsG0380014139.01.T01:CDS
AGTACCAATTCTGTTGCCAA+TGG 0.610914 3:+50283511 MsG0380014139.01.T01:CDS
TTTCTATGGTGGAATGACAA+TGG 0.611799 3:+50284109 MsG0380014139.01.T01:CDS
TCTGCTCTCAGATTTGAATG+AGG 0.616197 3:+50288236 MsG0380014139.01.T01:three_prime_UTR
TAGGAGTTTGCAAGAGACTG+AGG 0.618731 3:+50285369 MsG0380014139.01.T01:CDS
TCAGTTGATCAAGGATCGCA+CGG 0.618974 3:+50283429 MsG0380014139.01.T01:intron
GAGGATTGGCTTTATGAGGA+CGG 0.621172 3:+50285388 MsG0380014139.01.T01:CDS
CTACCTTGAGATCCATGCAT+AGG 0.630694 3:-50283251 None:intergenic
CTTTGCTAGTGACCAAGAGA+GGG 0.635803 3:+50285336 MsG0380014139.01.T01:CDS
CGAGTTCAACTAAATCTGCA+TGG 0.636814 3:+50283293 MsG0380014139.01.T01:CDS
AGCCGAACCCAAGTTCAACT+CGG 0.645716 3:-50282337 None:intergenic
AGGACCGATCTGAAAAGAAG+TGG 0.646743 3:-50283231 None:intergenic
CATTCGTGAATACATTGATG+AGG 0.652302 3:+50288110 MsG0380014139.01.T01:exon
CAAATCTGAGAGCAGATGAG+GGG 0.660529 3:-50288229 None:intergenic
GTGAATGAGAATTTCTATGG+TGG 0.675812 3:+50284098 MsG0380014139.01.T01:CDS
AATCTGAGAGCAGATGAGGG+GGG 0.715726 3:-50288227 None:intergenic
AGTCCTATGTCTATGAGACG+AGG 0.719415 3:+50284222 MsG0380014139.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+GGG - Chr3:50282847-50282828 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG - Chr3:50282848-50282829 None:intergenic 0.0%
!!! GATTATCTTATATTTTTTAT+TGG + Chr3:50284728-50284747 MsG0380014139.01.T01:intron 10.0%
!! AACAAAAAATAAAAACTACT+AGG + Chr3:50282499-50282518 MsG0380014139.01.T01:intron 15.0%
!! AATTAATTTATGTCTGTTTA+CGG + Chr3:50287976-50287995 MsG0380014139.01.T01:intron 15.0%
!! ACAAATATAAACTAATCTTA+AGG - Chr3:50285907-50285926 None:intergenic 15.0%
!! CATGAAATAAGATAAAAATT+TGG - Chr3:50285233-50285252 None:intergenic 15.0%
!! TCATAATTTATTCCAAAAAA+TGG - Chr3:50283366-50283385 None:intergenic 15.0%
!! TCTAATTTATTATATCATCA+TGG - Chr3:50286420-50286439 None:intergenic 15.0%
!!! GTAGTTTTTATTTTTTGTTT+TGG - Chr3:50282498-50282517 None:intergenic 15.0%
!!! TAATTTTGATATAAAAGCAA+GGG - Chr3:50287961-50287980 None:intergenic 15.0%
!!! TTAATTTTGATATAAAAGCA+AGG - Chr3:50287962-50287981 None:intergenic 15.0%
!! ATATAAATCCCTAAAATTTG+AGG + Chr3:50287642-50287661 MsG0380014139.01.T01:intron 20.0%
!! ATATATTCTATCATTAGAAC+AGG + Chr3:50285959-50285978 MsG0380014139.01.T01:intron 20.0%
!! ATCATGTAATTTCTTAAGTT+GGG + Chr3:50287133-50287152 MsG0380014139.01.T01:intron 20.0%
!! GGATTAAAATAAAAACTTCA+TGG + Chr3:50285082-50285101 MsG0380014139.01.T01:intron 20.0%
!! TAAAAAGTAAAACAGTTGTT+CGG - Chr3:50284500-50284519 None:intergenic 20.0%
!! TATAACTTTATCAAGTAAAG+TGG + Chr3:50285048-50285067 MsG0380014139.01.T01:intron 20.0%
!! TATATATATATATATCGAGC+TGG + Chr3:50282879-50282898 MsG0380014139.01.T01:intron 20.0%
!! TATCATGTAATTTCTTAAGT+TGG + Chr3:50287132-50287151 MsG0380014139.01.T01:intron 20.0%
!! TATGATGCTAATTAAAATCA+AGG - Chr3:50282567-50282586 None:intergenic 20.0%
!!! AACATTTCTTATTTGTTTCT+AGG + Chr3:50287915-50287934 MsG0380014139.01.T01:intron 20.0%
!!! AGTTTATATTTGTCATTTTC+TGG + Chr3:50285914-50285933 MsG0380014139.01.T01:intron 20.0%
!!! ATTCTAAATCCTCAAATTTT+AGG - Chr3:50287654-50287673 None:intergenic 20.0%
!!! CTTAAGATAAGCTTTTAATT+GGG + Chr3:50285707-50285726 MsG0380014139.01.T01:intron 20.0%
!!! CTTTCTTTTTCTTTTTCTTT+TGG + Chr3:50283623-50283642 MsG0380014139.01.T01:intron 20.0%
!!! GGTTTTATTTTTCCATTTTT+TGG + Chr3:50283351-50283370 MsG0380014139.01.T01:intron 20.0%
!!! TCTTAAGATAAGCTTTTAAT+TGG + Chr3:50285706-50285725 MsG0380014139.01.T01:intron 20.0%
!!! TTCTAAATCCTCAAATTTTA+GGG - Chr3:50287653-50287672 None:intergenic 20.0%
! AAAACTAGAAGATCTGAAAA+AGG + Chr3:50285441-50285460 MsG0380014139.01.T01:CDS 25.0%
! AATCTTAAGGAAAACAGAAA+GGG - Chr3:50285894-50285913 None:intergenic 25.0%
! ACAAACCCATAAATGTAATA+TGG + Chr3:50283867-50283886 MsG0380014139.01.T01:intron 25.0%
! ACTTGATAAAGTTATAGCAT+GGG - Chr3:50285044-50285063 None:intergenic 25.0%
! AGATTGTCTAAGAAAAGATA+AGG + Chr3:50284052-50284071 MsG0380014139.01.T01:CDS 25.0%
! AGCATCACAATAATATATAG+TGG - Chr3:50285684-50285703 None:intergenic 25.0%
! ATATGACTTGACCATAATAT+TGG - Chr3:50285832-50285851 None:intergenic 25.0%
! ATGATATGAATAGATCTGAT+AGG + Chr3:50287845-50287864 MsG0380014139.01.T01:intron 25.0%
! CATAAATGAGGTTAACATTA+GGG - Chr3:50286470-50286489 None:intergenic 25.0%
! CTATGTTATTATTGAATGTG+AGG - Chr3:50287013-50287032 None:intergenic 25.0%
! GATTGCCATATTACATTTAT+GGG - Chr3:50283875-50283894 None:intergenic 25.0%
! TAATCTTAAGGAAAACAGAA+AGG - Chr3:50285895-50285914 None:intergenic 25.0%
! TACTTGATAAAGTTATAGCA+TGG - Chr3:50285045-50285064 None:intergenic 25.0%
! TATGAAATATTATCTGCACA+GGG + Chr3:50285190-50285209 MsG0380014139.01.T01:intron 25.0%
! TATGACTTGACCATAATATT+GGG - Chr3:50285831-50285850 None:intergenic 25.0%
! TCTTATCCTATATATTGCAT+AGG + Chr3:50283840-50283859 MsG0380014139.01.T01:intron 25.0%
! TGATATGAATAGATCTGATA+GGG + Chr3:50287846-50287865 MsG0380014139.01.T01:intron 25.0%
! TGATATGATAATTCGTGTAA+TGG - Chr3:50286189-50286208 None:intergenic 25.0%
! TGATTGCCATATTACATTTA+TGG - Chr3:50283876-50283895 None:intergenic 25.0%
!! CTTTTAATATGAGAATCCAA+AGG - Chr3:50284991-50285010 None:intergenic 25.0%
!! TATTGGTTGGTTCATATTAA+AGG - Chr3:50286337-50286356 None:intergenic 25.0%
!! TCATGTAATTTCTTAAGTTG+GGG + Chr3:50287134-50287153 MsG0380014139.01.T01:intron 25.0%
!! TGTCCATAAAATGCTTTAAA+AGG + Chr3:50286622-50286641 MsG0380014139.01.T01:intron 25.0%
!! TTGCTAAAAGGAAGTATATA+TGG + Chr3:50283123-50283142 MsG0380014139.01.T01:intron 25.0%
!!! ATCCAAATATTCAGGTTTTT+CGG + Chr3:50287730-50287749 MsG0380014139.01.T01:intron 25.0%
!!! TCATTCAAATTTTGATGCAA+TGG + Chr3:50283459-50283478 MsG0380014139.01.T01:CDS 25.0%
!!! TCTCCTTTTAAAGCATTTTA+TGG - Chr3:50286628-50286647 None:intergenic 25.0%
!!! TTAAAAATCTCTAGAATCCT+TGG - Chr3:50288304-50288323 None:intergenic 25.0%
!!! TTTGTCATTTTCTGGTTATA+TGG + Chr3:50285922-50285941 MsG0380014139.01.T01:intron 25.0%
!!! TTTTAAGAGAGACAAATTCA+AGG + Chr3:50282531-50282550 MsG0380014139.01.T01:intron 25.0%
!!! TTTTTTCTATACTTGTCAGA+AGG - Chr3:50288175-50288194 None:intergenic 25.0%
AAAGAATTGTGAAGATCTAC+TGG - Chr3:50287478-50287497 None:intergenic 30.0%
AAATTCTCATTCACTGCAAT+AGG - Chr3:50284092-50284111 None:intergenic 30.0%
AAGGCATGAAAACAATTCTT+CGG - Chr3:50285116-50285135 None:intergenic 30.0%
AATCCAAAGGATATCATTAG+GGG - Chr3:50284978-50284997 None:intergenic 30.0%
ACAGTACTTACATAACTTTG+TGG - Chr3:50283568-50283587 None:intergenic 30.0%
ACGAATTATCATATCACCAT+GGG + Chr3:50286193-50286212 MsG0380014139.01.T01:intron 30.0%
ACTAATGCAAACGTGATATA+TGG + Chr3:50282747-50282766 MsG0380014139.01.T01:intron 30.0%
AGAATCCAAAGGATATCATT+AGG - Chr3:50284980-50284999 None:intergenic 30.0%
ATAAAAACTACTAGGCATCA+AGG + Chr3:50282507-50282526 MsG0380014139.01.T01:intron 30.0%
ATTAGGATTCACAAGACTAT+TGG - Chr3:50286354-50286373 None:intergenic 30.0%
CCTTATTCATTCTACATCAA+GGG + Chr3:50286379-50286398 MsG0380014139.01.T01:intron 30.0%
CCTTGATGTAGAATGAATAA+GGG - Chr3:50286381-50286400 None:intergenic 30.0%
CTATGAAATATTATCTGCAC+AGG + Chr3:50285189-50285208 MsG0380014139.01.T01:intron 30.0%
CTGAACATGTGTTTAAAAGT+GGG + Chr3:50286712-50286731 MsG0380014139.01.T01:intron 30.0%
GAAGATTATACTTCAAGAGT+TGG - Chr3:50287188-50287207 None:intergenic 30.0%
GAATAGCTGATGTAGTATAT+TGG - Chr3:50287070-50287089 None:intergenic 30.0%
GAATCCAAAGGATATCATTA+GGG - Chr3:50284979-50284998 None:intergenic 30.0%
GAATCTTATGCACCAAAAAA+GGG - Chr3:50286292-50286311 None:intergenic 30.0%
GAATGAATAAGGGTAACATT+AGG - Chr3:50286371-50286390 None:intergenic 30.0%
GATTCTATTGAACTTATGAG+AGG + Chr3:50287157-50287176 MsG0380014139.01.T01:intron 30.0%
GCATAAATGAGGTTAACATT+AGG - Chr3:50286471-50286490 None:intergenic 30.0%
GTCTATCCTATGCAATATAT+AGG - Chr3:50283849-50283868 None:intergenic 30.0%
TAAAAACTACTAGGCATCAA+GGG + Chr3:50282508-50282527 MsG0380014139.01.T01:intron 30.0%
TACTCGTCTCTTAATTTAGA+AGG + Chr3:50286565-50286584 MsG0380014139.01.T01:intron 30.0%
TCAATGTATTCACGAATGAT+TGG - Chr3:50288108-50288127 None:intergenic 30.0%
TCAGATCTATTCATATCATG+TGG - Chr3:50287844-50287863 None:intergenic 30.0%
TCTCTCTCTAGATACAAAAT+AGG + Chr3:50287305-50287324 MsG0380014139.01.T01:intron 30.0%
TCTGGTTATATGGTTTGATT+TGG + Chr3:50285932-50285951 MsG0380014139.01.T01:intron 30.0%
TGAACATGTGTTTAAAAGTG+GGG + Chr3:50286713-50286732 MsG0380014139.01.T01:intron 30.0%
TGAATCTTATGCACCAAAAA+AGG - Chr3:50286293-50286312 None:intergenic 30.0%
TGGTATATGCTAGAACATTA+TGG - Chr3:50284667-50284686 None:intergenic 30.0%
TGTTATTCTTGAACCAAACT+AGG + Chr3:50286505-50286524 MsG0380014139.01.T01:intron 30.0%
TTTGATATAAAAGCAAGGGA+CGG - Chr3:50287957-50287976 None:intergenic 30.0%
! AAAATCGACTCATGAATAGT+GGG - Chr3:50286813-50286832 None:intergenic 30.0%
! AAGAAATGTTTTACAGAAGC+AGG - Chr3:50287905-50287924 None:intergenic 30.0%
! ATAGCATGGGTTCTTTAAAA+AGG - Chr3:50285031-50285050 None:intergenic 30.0%
! ATTATACTTCAAGAGTTGGT+AGG - Chr3:50287184-50287203 None:intergenic 30.0%
! CTCTTAATTTAGAAGGCATA+GGG + Chr3:50286572-50286591 MsG0380014139.01.T01:intron 30.0%
! GAAGTGTTTGTAAATCACTA+TGG + Chr3:50286040-50286059 MsG0380014139.01.T01:intron 30.0%
! TCTCTTAATTTAGAAGGCAT+AGG + Chr3:50286571-50286590 MsG0380014139.01.T01:intron 30.0%
! TCTTAATTTAGAAGGCATAG+GGG + Chr3:50286573-50286592 MsG0380014139.01.T01:intron 30.0%
! TTGGTGAGTATGACTTTTTA+TGG + Chr3:50287232-50287251 MsG0380014139.01.T01:intron 30.0%
! TTGTTGTTGTGTGAATTCAA+AGG - Chr3:50284587-50284606 None:intergenic 30.0%
! TTTCTGTCATACCATTTTAC+AGG + Chr3:50284028-50284047 MsG0380014139.01.T01:intron 30.0%
!! CATGTAATTTCTTAAGTTGG+GGG + Chr3:50287135-50287154 MsG0380014139.01.T01:intron 30.0%
!! CTGGCTTTTATTCTAATGTA+GGG - Chr3:50283074-50283093 None:intergenic 30.0%
!! TAACTGGAGTTCTTTTTCAT+GGG - Chr3:50284150-50284169 None:intergenic 30.0%
!! TTCGTCACGAACTTTTATTT+TGG + Chr3:50282406-50282425 MsG0380014139.01.T01:CDS 30.0%
!!! ATCTTACCTGTTCTTTTTTC+TGG - Chr3:50285651-50285670 None:intergenic 30.0%
!!! TCTGGCTTTTATTCTAATGT+AGG - Chr3:50283075-50283094 None:intergenic 30.0%
!!! TCTTACCTGTTCTTTTTTCT+GGG - Chr3:50285650-50285669 None:intergenic 30.0%
!!! TTTCAGATCTTCTAGTTTTG+AGG - Chr3:50285440-50285459 None:intergenic 30.0%
AAAGGATATCATTAGGGGTT+AGG - Chr3:50284973-50284992 None:intergenic 35.0%
AAATGTTATGTGGGGTAAGA+TGG - Chr3:50284822-50284841 None:intergenic 35.0%
AACAGAATTGGTACTATCTG+AGG - Chr3:50283506-50283525 None:intergenic 35.0%
AACAGCTCTTCAACACATAT+CGG + Chr3:50285311-50285330 MsG0380014139.01.T01:intron 35.0%
AACTACAATTAGTCCCACAT+CGG - Chr3:50282697-50282716 None:intergenic 35.0%
AAGTAAAACAGTTGTTCGGT+TGG - Chr3:50284496-50284515 None:intergenic 35.0%
AATATTGGGTCGACATTCTT+AGG - Chr3:50285817-50285836 None:intergenic 35.0%
AATTGAATCAGCTCGAAACT+CGG + Chr3:50282377-50282396 MsG0380014139.01.T01:CDS 35.0%
ACCTCATTTATGCTACATCA+AGG + Chr3:50286478-50286497 MsG0380014139.01.T01:intron 35.0%
ACTTGAAGGGTGAAAAACAA+CGG - Chr3:50284898-50284917 None:intergenic 35.0%
AGAATGTCGACCCAATATTA+TGG + Chr3:50285818-50285837 MsG0380014139.01.T01:CDS 35.0%
AGAGACATATTAGATGTGGT+TGG - Chr3:50286782-50286801 None:intergenic 35.0%
AGATCCCCTATTATTACTGA+AGG - Chr3:50286602-50286621 None:intergenic 35.0%
AGATCTAGAGATCAATGAGT+TGG - Chr3:50284699-50284718 None:intergenic 35.0%
AGTCAGAGACATATTAGATG+TGG - Chr3:50286786-50286805 None:intergenic 35.0%
AGTTCCACTCATAAAAGACA+AGG - Chr3:50287363-50287382 None:intergenic 35.0%
AGTTGAACTTGAGCTAAGTA+TGG - Chr3:50282927-50282946 None:intergenic 35.0%
ATATCACGTTTGCATTAGTG+AGG - Chr3:50282746-50282765 None:intergenic 35.0%
ATATGGTTACCTTTCGATCT+GGG + Chr3:50286877-50286896 MsG0380014139.01.T01:intron 35.0%
ATGCAAACGTGATATATGGA+AGG + Chr3:50282751-50282770 MsG0380014139.01.T01:intron 35.0%
ATGCATCATCTATGTTTGTG+AGG + Chr3:50287556-50287575 MsG0380014139.01.T01:intron 35.0%
ATGTTAAAAGAGTCCCACAT+TGG + Chr3:50286677-50286696 MsG0380014139.01.T01:intron 35.0%
ATTAGGGTTCACAATGCTAA+TGG - Chr3:50286454-50286473 None:intergenic 35.0%
CAAAGAAAAGAAGAACACCT+TGG + Chr3:50284199-50284218 MsG0380014139.01.T01:CDS 35.0%
CACGAATTATCATATCACCA+TGG + Chr3:50286192-50286211 MsG0380014139.01.T01:intron 35.0%
CAGCTACAGAAATAGTAGAT+TGG - Chr3:50285518-50285537 None:intergenic 35.0%
CATTCGTGAATACATTGATG+AGG + Chr3:50288110-50288129 MsG0380014139.01.T01:exon 35.0%
CCCTTATTCATTCTACATCA+AGG + Chr3:50286378-50286397 MsG0380014139.01.T01:intron 35.0%
CCCTTGATGTAGAATGAATA+AGG - Chr3:50286382-50286401 None:intergenic 35.0%
CCTCATTTATGCTACATCAA+GGG + Chr3:50286479-50286498 MsG0380014139.01.T01:intron 35.0%
CCTGAACATGTGTTTAAAAG+TGG + Chr3:50286711-50286730 MsG0380014139.01.T01:intron 35.0%
CTCATTTATGCTACATCAAG+GGG + Chr3:50286480-50286499 MsG0380014139.01.T01:intron 35.0%
CTCCGAAAAACCTGAATATT+TGG - Chr3:50287735-50287754 None:intergenic 35.0%
GAACATGTGTTTAAAAGTGG+GGG + Chr3:50286714-50286733 MsG0380014139.01.T01:intron 35.0%
GAATCAATAGCACAAGAATG+TGG - Chr3:50283158-50283177 None:intergenic 35.0%
GAGACATATTAGATGTGGTT+GGG - Chr3:50286781-50286800 None:intergenic 35.0%
GAGGATCTATCCAAATATTC+AGG + Chr3:50287722-50287741 MsG0380014139.01.T01:intron 35.0%
GAGTAGAATGACAGAACAAA+GGG - Chr3:50286550-50286569 None:intergenic 35.0%
GATCCCCTATTATTACTGAA+GGG - Chr3:50286601-50286620 None:intergenic 35.0%
GATCTAGAGATCAATGAGTT+GGG - Chr3:50284698-50284717 None:intergenic 35.0%
GCAGTGAATGAGAATTTCTA+TGG + Chr3:50284095-50284114 MsG0380014139.01.T01:CDS 35.0%
GTGAATGAGAATTTCTATGG+TGG + Chr3:50284098-50284117 MsG0380014139.01.T01:CDS 35.0%
TAACCCCTAATGATATCCTT+TGG + Chr3:50284972-50284991 MsG0380014139.01.T01:intron 35.0%
TAGACAATCTGCCTGTAAAA+TGG - Chr3:50284042-50284061 None:intergenic 35.0%
TAGTATATTGGCAAGGAATG+AGG - Chr3:50287058-50287077 None:intergenic 35.0%
TCTTTGTACCGAATCTCAAT+TGG - Chr3:50285547-50285566 None:intergenic 35.0%
TGCATCATCTATGTTTGTGA+GGG + Chr3:50287557-50287576 MsG0380014139.01.T01:intron 35.0%
TGTGCACTTTCTTTGCTAAA+AGG + Chr3:50283111-50283130 MsG0380014139.01.T01:intron 35.0%
TTGATTCAGCTACAGTAAGT+AGG + Chr3:50283327-50283346 MsG0380014139.01.T01:intron 35.0%
TTGGAAGGAGTTACTCAAAT+GGG + Chr3:50286831-50286850 MsG0380014139.01.T01:intron 35.0%
TTTGGAAGGAGTTACTCAAA+TGG + Chr3:50286830-50286849 MsG0380014139.01.T01:intron 35.0%
! AAGGAAGTGCAAATGTTATG+TGG - Chr3:50284832-50284851 None:intergenic 35.0%
! AATGTGGGACTCTTTTAACA+TGG - Chr3:50286678-50286697 None:intergenic 35.0%
! ACAATTCTTTTCGACGTTCT+AGG + Chr3:50287488-50287507 MsG0380014139.01.T01:intron 35.0%
! AGGAAGTGCAAATGTTATGT+GGG - Chr3:50284831-50284850 None:intergenic 35.0%
! ATCTAGCATTTTGTGACAGT+AGG - Chr3:50286153-50286172 None:intergenic 35.0%
! CAAAATCGACTCATGAATAG+TGG - Chr3:50286814-50286833 None:intergenic 35.0%
! CATCTATAGAAAGCTGATTC+TGG - Chr3:50283093-50283112 None:intergenic 35.0%
! CTTTTATTCTAATGTAGGGC+TGG - Chr3:50283070-50283089 None:intergenic 35.0%
! TCATATTAAGAGCGCAATAG+AGG + Chr3:50285846-50285865 MsG0380014139.01.T01:CDS 35.0%
! TGTTTCAGATCAAGTGTTGT+CGG + Chr3:50284403-50284422 MsG0380014139.01.T01:intron 35.0%
! TTGACCACTTCTTTTCAGAT+CGG + Chr3:50283227-50283246 MsG0380014139.01.T01:CDS 35.0%
! TTTCTATGGTGGAATGACAA+TGG + Chr3:50284109-50284128 MsG0380014139.01.T01:CDS 35.0%
!! AAAATCTCTAGAATCCTTGG+AGG - Chr3:50288301-50288320 None:intergenic 35.0%
!! ATTCATGAGTCGATTTTGGA+AGG + Chr3:50286816-50286835 MsG0380014139.01.T01:intron 35.0%
!! CAAGGTGTTCTTCTTTTCTT+TGG - Chr3:50284201-50284220 None:intergenic 35.0%
!! CAATCTACTATTTCTGTAGC+TGG + Chr3:50285516-50285535 MsG0380014139.01.T01:intron 35.0%
!! CACTATTCATGAGTCGATTT+TGG + Chr3:50286812-50286831 MsG0380014139.01.T01:intron 35.0%
!! CCACTTTTAAACACATGTTC+AGG - Chr3:50286714-50286733 None:intergenic 35.0%
!! CTAACTGGAGTTCTTTTTCA+TGG - Chr3:50284151-50284170 None:intergenic 35.0%
!! TTCTAGAATGACACCTAGTT+TGG - Chr3:50286521-50286540 None:intergenic 35.0%
!!! ACCAAAGTTTTGAAGTGCAT+AGG - Chr3:50287217-50287236 None:intergenic 35.0%
!!! AGTAAAGTGGAAGTTTTGAG+TGG + Chr3:50285061-50285080 MsG0380014139.01.T01:intron 35.0%
!!! CAAAGTTTTGAAGTGCATAG+GGG - Chr3:50287215-50287234 None:intergenic 35.0%
!!! CCAAAGTTTTGAAGTGCATA+GGG - Chr3:50287216-50287235 None:intergenic 35.0%
!!! CTTACCTGTTCTTTTTTCTG+GGG - Chr3:50285649-50285668 None:intergenic 35.0%
!!! GAACTATTTTCGAGTTGGTT+CGG + Chr3:50283037-50283056 MsG0380014139.01.T01:intron 35.0%
!!! TTCCAACACAAGGTTTTAGA+GGG - Chr3:50284872-50284891 None:intergenic 35.0%
AAGAGAGGGATGTCATATCT+AGG + Chr3:50285350-50285369 MsG0380014139.01.T01:CDS 40.0%
AAGAGTTAAGTCGCTTAAGC+AGG - Chr3:50283601-50283620 None:intergenic 40.0%
AAGGAGTTACTCAAATGGGT+GGG + Chr3:50286835-50286854 MsG0380014139.01.T01:intron 40.0%
AGAATCCTTGGAGGAACAAA+TGG - Chr3:50288292-50288311 None:intergenic 40.0%
AGAGTTAAGTCGCTTAAGCA+GGG - Chr3:50283600-50283619 None:intergenic 40.0%
AGTACCAATTCTGTTGCCAA+TGG + Chr3:50283511-50283530 MsG0380014139.01.T01:CDS 40.0%
ATAACAACCTGTATGCATGC+AGG - Chr3:50283192-50283211 None:intergenic 40.0%
ATTCAGCTACAGTAAGTAGG+AGG + Chr3:50283330-50283349 MsG0380014139.01.T01:intron 40.0%
CAACTCAAGTTCGACTCATT+TGG + Chr3:50282971-50282990 MsG0380014139.01.T01:intron 40.0%
CATATGGTTACCTTTCGATC+TGG + Chr3:50286876-50286895 MsG0380014139.01.T01:intron 40.0%
CCCTATGCACTTCAAAACTT+TGG + Chr3:50287213-50287232 MsG0380014139.01.T01:intron 40.0%
CCCTTGATGTAGCATAAATG+AGG - Chr3:50286482-50286501 None:intergenic 40.0%
CGAAGATGACAAAGACAAGA+TGG + Chr3:50288076-50288095 MsG0380014139.01.T01:CDS 40.0%
CGAGTAGAATGACAGAACAA+AGG - Chr3:50286551-50286570 None:intergenic 40.0%
CGAGTTCAACTAAATCTGCA+TGG + Chr3:50283293-50283312 MsG0380014139.01.T01:CDS 40.0%
CTTAAGCGTACAGTGGTATT+GGG - Chr3:50282618-50282637 None:intergenic 40.0%
GAAAAGATAAGGCGAACAGA+AGG + Chr3:50284063-50284082 MsG0380014139.01.T01:CDS 40.0%
GAACAGGTAAGATAACTAGC+AGG + Chr3:50285658-50285677 MsG0380014139.01.T01:intron 40.0%
GAAGAGAAGAATCCACAGTA+GGG - Chr3:50284942-50284961 None:intergenic 40.0%
GAGACAAATCACCTCATAAC+TGG + Chr3:50286103-50286122 MsG0380014139.01.T01:intron 40.0%
GCTGATGTAGTATATTGGCA+AGG - Chr3:50287065-50287084 None:intergenic 40.0%
GGATTCACAAGACTATTGGT+TGG - Chr3:50286350-50286369 None:intergenic 40.0%
GGGACACAAACAAAATCGAA+AGG + Chr3:50287760-50287779 MsG0380014139.01.T01:intron 40.0%
GGTGCCCTTCAGTAATAATA+GGG + Chr3:50286594-50286613 MsG0380014139.01.T01:intron 40.0%
GTGCCCTTCAGTAATAATAG+GGG + Chr3:50286595-50286614 MsG0380014139.01.T01:intron 40.0%
GTGCTTTAACTACCATCCAT+AGG + Chr3:50284767-50284786 MsG0380014139.01.T01:intron 40.0%
TACATTACCTGCATGCATAC+AGG + Chr3:50283182-50283201 MsG0380014139.01.T01:intron 40.0%
TAGATATGACATCCCTCTCT+TGG - Chr3:50285351-50285370 None:intergenic 40.0%
TCAAATCTGAGAGCAGATGA+GGG - Chr3:50288233-50288252 None:intergenic 40.0%
TCTGCTCTCAGATTTGAATG+AGG + Chr3:50288236-50288255 MsG0380014139.01.T01:three_prime_UTR 40.0%
TGTAAATTGACGAGTCTGAG+AGG + Chr3:50287703-50287722 MsG0380014139.01.T01:intron 40.0%
TGTACGCTTAAGCATGTAAC+AGG + Chr3:50282626-50282645 MsG0380014139.01.T01:intron 40.0%
TTACATGATAGCCCCTTAAG+AGG - Chr3:50287122-50287141 None:intergenic 40.0%
TTACATGCTTAAGCGTACAG+TGG - Chr3:50282625-50282644 None:intergenic 40.0%
TTAGCAATGAAGCAGAGCAT+TGG + Chr3:50285758-50285777 MsG0380014139.01.T01:CDS 40.0%
TTCAAATCTGAGAGCAGATG+AGG - Chr3:50288234-50288253 None:intergenic 40.0%
TTGTGGAGAATCACGCTTAT+TGG - Chr3:50283551-50283570 None:intergenic 40.0%
! ACAGTGGTATTGGGAAGTAT+TGG - Chr3:50282609-50282628 None:intergenic 40.0%
! AGTTAAAGCACTAGAGGTAG+AGG - Chr3:50284758-50284777 None:intergenic 40.0%
! ATTGGTACTATCTGAGGTCT+CGG - Chr3:50283500-50283519 None:intergenic 40.0%
! CAATGAGTTGGGTAGAGATA+TGG - Chr3:50284687-50284706 None:intergenic 40.0%
! CTCACATGACATCTTTTGCT+TGG + Chr3:50286219-50286238 MsG0380014139.01.T01:intron 40.0%
! GAGTATGACTTTTTATGGCC+AGG + Chr3:50287237-50287256 MsG0380014139.01.T01:intron 40.0%
! GATGGTAGTTAAAGCACTAG+AGG - Chr3:50284764-50284783 None:intergenic 40.0%
! GCAACCTTGTCTTTTATGAG+TGG + Chr3:50287356-50287375 MsG0380014139.01.T01:intron 40.0%
! GGAAGTGCAAATGTTATGTG+GGG - Chr3:50284830-50284849 None:intergenic 40.0%
! GTTGTGCACAAACTTTTGTG+TGG + Chr3:50283404-50283423 MsG0380014139.01.T01:intron 40.0%
! TGGTGGATCCAATTGAGATT+CGG + Chr3:50285536-50285555 MsG0380014139.01.T01:CDS 40.0%
!! AAGCAGTTCGAGTTTTGCAA+GGG - Chr3:50285156-50285175 None:intergenic 40.0%
!! AGGTGCTGACTATATTTCTC+TGG + Chr3:50286983-50287002 MsG0380014139.01.T01:intron 40.0%
!! ATCAAGTGCTGACACTTGAA+GGG - Chr3:50284911-50284930 None:intergenic 40.0%
!! CTTCCAACACAAGGTTTTAG+AGG - Chr3:50284873-50284892 None:intergenic 40.0%
!! TAAGCAGTTCGAGTTTTGCA+AGG - Chr3:50285157-50285176 None:intergenic 40.0%
!! TCAGGTTTTTCGGAGTTGAT+GGG + Chr3:50287740-50287759 MsG0380014139.01.T01:intron 40.0%
!! TCATCTTCGTCTTCTGAAGT+TGG - Chr3:50288038-50288057 None:intergenic 40.0%
!! TCTACTATTTCTGTAGCTGG+TGG + Chr3:50285519-50285538 MsG0380014139.01.T01:intron 40.0%
!! TTCAGGTTTTTCGGAGTTGA+TGG + Chr3:50287739-50287758 MsG0380014139.01.T01:intron 40.0%
!! TTTGTGAGGGAGTGTTGATA+GGG + Chr3:50287570-50287589 MsG0380014139.01.T01:intron 40.0%
!!! AGATCAAGTGTTGTCGGTTT+TGG + Chr3:50284409-50284428 MsG0380014139.01.T01:intron 40.0%
!!! GTCTCGAACTATTTTCGAGT+TGG + Chr3:50283032-50283051 MsG0380014139.01.T01:intron 40.0%
!!! TTCTTTTTTCTGGGGTGGAA+CGG - Chr3:50285641-50285660 None:intergenic 40.0%
!!! TTTTGAAGTGCATAGGGGAA+GGG - Chr3:50287210-50287229 None:intergenic 40.0%
AAACACCGGAGAAGATCCTA+TGG - Chr3:50284786-50284805 None:intergenic 45.0%
AAATCTGAGAGCAGATGAGG+GGG - Chr3:50288231-50288250 None:intergenic 45.0%
AAATGCTAGATGTGCCCACA+TGG + Chr3:50286162-50286181 MsG0380014139.01.T01:intron 45.0%
AACTGAGAGCGACCTCTTAA+GGG + Chr3:50287107-50287126 MsG0380014139.01.T01:intron 45.0%
AATGCTAGATGTGCCCACAT+GGG + Chr3:50286163-50286182 MsG0380014139.01.T01:intron 45.0%
AATTCGTGTAATGGCCCATG+TGG - Chr3:50286180-50286199 None:intergenic 45.0%
ACAACGGATCTTCCAACACA+AGG - Chr3:50284882-50284901 None:intergenic 45.0%
ACCATCCATAGGATCTTCTC+CGG + Chr3:50284778-50284797 MsG0380014139.01.T01:intron 45.0%
ACCTTTGCCAATTCCCACAA+AGG - Chr3:50286941-50286960 None:intergenic 45.0%
ACCTTTGTGGGAATTGGCAA+AGG + Chr3:50286937-50286956 MsG0380014139.01.T01:intron 45.0%
ACTCCTCGTCTCATAGACAT+AGG - Chr3:50284228-50284247 None:intergenic 45.0%
AGAACTCCAGTTAGCTCAAC+AGG + Chr3:50284157-50284176 MsG0380014139.01.T01:CDS 45.0%
AGAGAGAGAGAGAGAGCTTA+TGG - Chr3:50287270-50287289 None:intergenic 45.0%
AGAGAGAGAGCTTATGGAAG+TGG - Chr3:50287264-50287283 None:intergenic 45.0%
AGGACCGATCTGAAAAGAAG+TGG - Chr3:50283234-50283253 None:intergenic 45.0%
AGTCCTATGTCTATGAGACG+AGG + Chr3:50284222-50284241 MsG0380014139.01.T01:CDS 45.0%
ATCTCAGCCCAAACCTTTGT+GGG + Chr3:50286925-50286944 MsG0380014139.01.T01:intron 45.0%
ATTCAAGCTCGCGAACAACT+AGG + Chr3:50282444-50282463 MsG0380014139.01.T01:CDS 45.0%
ATTCGTGTAATGGCCCATGT+GGG - Chr3:50286179-50286198 None:intergenic 45.0%
CAAATCTGAGAGCAGATGAG+GGG - Chr3:50288232-50288251 None:intergenic 45.0%
CGAAGAGAAGAATCCACAGT+AGG - Chr3:50284943-50284962 None:intergenic 45.0%
CTACCTTGAGATCCATGCAT+AGG - Chr3:50283254-50283273 None:intergenic 45.0%
CTATCACAACCCCACAAAAC+TGG - Chr3:50286757-50286776 None:intergenic 45.0%
CTCAACTGCTGATGAGCATA+TGG + Chr3:50286860-50286879 MsG0380014139.01.T01:intron 45.0%
CTCATAGACATAGGACTCCA+AGG - Chr3:50284219-50284238 None:intergenic 45.0%
CTGGTTGTCATCCAGTTATG+AGG - Chr3:50286117-50286136 None:intergenic 45.0%
CTTTGCTAGTGACCAAGAGA+GGG + Chr3:50285336-50285355 MsG0380014139.01.T01:CDS 45.0%
GAAGGAGTTACTCAAATGGG+TGG + Chr3:50286834-50286853 MsG0380014139.01.T01:intron 45.0%
GACAACCATTTGTTCCTCCA+AGG + Chr3:50288284-50288303 MsG0380014139.01.T01:three_prime_UTR 45.0%
GATGTCATGTGAGTTTCCCA+TGG - Chr3:50286212-50286231 None:intergenic 45.0%
GCACATGGGGATTAAAACAC+CGG - Chr3:50284800-50284819 None:intergenic 45.0%
GCATGGATCTCAAGGTAGTA+AGG + Chr3:50283256-50283275 MsG0380014139.01.T01:CDS 45.0%
GCCAATTCCCACAAAGGTTT+GGG - Chr3:50286935-50286954 None:intergenic 45.0%
GCTTAAGCGTACAGTGGTAT+TGG - Chr3:50282619-50282638 None:intergenic 45.0%
GGATATCATTAGGGGTTAGG+AGG - Chr3:50284970-50284989 None:intergenic 45.0%
GGGTGCCCTTCAGTAATAAT+AGG + Chr3:50286593-50286612 MsG0380014139.01.T01:intron 45.0%
GGTTTGGGCTGAGATATCTA+TGG - Chr3:50286920-50286939 None:intergenic 45.0%
GTTTATGCAGTCAGACACTG+AGG + Chr3:50284327-50284346 MsG0380014139.01.T01:intron 45.0%
GTTTGCAAGAGACTGAGGAT+TGG + Chr3:50285374-50285393 MsG0380014139.01.T01:CDS 45.0%
TAGGAGTTTGCAAGAGACTG+AGG + Chr3:50285369-50285388 MsG0380014139.01.T01:CDS 45.0%
TATCTCAGCCCAAACCTTTG+TGG + Chr3:50286924-50286943 MsG0380014139.01.T01:intron 45.0%
TCAGTTGATCAAGGATCGCA+CGG + Chr3:50283429-50283448 MsG0380014139.01.T01:intron 45.0%
TCCACCCCAGAAAAAAGAAC+AGG + Chr3:50285642-50285661 MsG0380014139.01.T01:CDS 45.0%
TCTGACTACTTCTCATTGCG+AGG + Chr3:50286081-50286100 MsG0380014139.01.T01:intron 45.0%
TGCATGTTACCCAGATCGAA+AGG - Chr3:50286889-50286908 None:intergenic 45.0%
TGCCAATTCCCACAAAGGTT+TGG - Chr3:50286936-50286955 None:intergenic 45.0%
TGTCTATGAGACGAGGAGTA+AGG + Chr3:50284229-50284248 MsG0380014139.01.T01:CDS 45.0%
TGTGTGGCTTCAGTTGATCA+AGG + Chr3:50283420-50283439 MsG0380014139.01.T01:intron 45.0%
TTGATTCTCCTCTCACTCTC+TGG + Chr3:50286262-50286281 MsG0380014139.01.T01:intron 45.0%
TTTCAGATCGGTCCTATGCA+TGG + Chr3:50283239-50283258 MsG0380014139.01.T01:CDS 45.0%
! AACCGAGTTGAACTTGGGTT+CGG + Chr3:50282335-50282354 MsG0380014139.01.T01:CDS 45.0%
! AGTCGAACCGAGTTGAACTT+GGG + Chr3:50282330-50282349 MsG0380014139.01.T01:CDS 45.0%
! TTTTGTGACAGTAGGTCCTC+TGG - Chr3:50286145-50286164 None:intergenic 45.0%
!! AGAGCATTGGCTAACAGAGA+AGG + Chr3:50285771-50285790 MsG0380014139.01.T01:CDS 45.0%
!! CAGTTTTGTGGGGTTGTGAT+AGG + Chr3:50286755-50286774 MsG0380014139.01.T01:intron 45.0%
!! CTCCCTCTAAAACCTTGTGT+TGG + Chr3:50284867-50284886 MsG0380014139.01.T01:intron 45.0%
!! GACTGAGGATTGGCTTTATG+AGG + Chr3:50285384-50285403 MsG0380014139.01.T01:CDS 45.0%
!! GAGGATTGGCTTTATGAGGA+CGG + Chr3:50285388-50285407 MsG0380014139.01.T01:CDS 45.0%
!! GATCAAGTGCTGACACTTGA+AGG - Chr3:50284912-50284931 None:intergenic 45.0%
!! GTTTGTGAGGGAGTGTTGAT+AGG + Chr3:50287569-50287588 MsG0380014139.01.T01:intron 45.0%
!! TTCGTCTTCTGAAGTTGGCT+TGG - Chr3:50288033-50288052 None:intergenic 45.0%
!!! ACCTGTTCTTTTTTCTGGGG+TGG - Chr3:50285646-50285665 None:intergenic 45.0%
!!! AGGTTTTAGAGGGAGGTCTT+TGG - Chr3:50284862-50284881 None:intergenic 45.0%
!!! CAACACAAGGTTTTAGAGGG+AGG - Chr3:50284869-50284888 None:intergenic 45.0%
!!! GGTTTTAGAGGGAGGTCTTT+GGG - Chr3:50284861-50284880 None:intergenic 45.0%
!!! GTTTTGAAGTGCATAGGGGA+AGG - Chr3:50287211-50287230 None:intergenic 45.0%
!! TAAAAATAATAAAATAAACT+TGG - Chr3:50282784-50282803 None:intergenic 5.0%
!! TATATATATATATATATATG+GGG - Chr3:50282827-50282846 None:intergenic 5.0%
AAAGGTTGCAGTAAGCCAGC+TGG + Chr3:50286955-50286974 MsG0380014139.01.T01:intron 50.0%
AATCTGAGAGCAGATGAGGG+GGG - Chr3:50288230-50288249 None:intergenic 50.0%
ACAAAACTGGCTGTGAGGTG+AGG - Chr3:50286744-50286763 None:intergenic 50.0%
ACCGGAGAAGATCCTATGGA+TGG - Chr3:50284782-50284801 None:intergenic 50.0%
ACTGAGAGCGACCTCTTAAG+GGG + Chr3:50287108-50287127 MsG0380014139.01.T01:intron 50.0%
AGAGCTTATGGAAGTGGTCC+TGG - Chr3:50287258-50287277 None:intergenic 50.0%
AGCCGAACCCAAGTTCAACT+CGG - Chr3:50282340-50282359 None:intergenic 50.0%
AGCCTAATCCCACCACTTAG+TGG + Chr3:50284616-50284635 MsG0380014139.01.T01:intron 50.0%
AGCGCCATTGGCAACAGAAT+TGG - Chr3:50283518-50283537 None:intergenic 50.0%
AGCTCGCGAACAACTAGGTT+CGG + Chr3:50282449-50282468 MsG0380014139.01.T01:intron 50.0%
AGGCCATCTCACATCCAATG+TGG - Chr3:50286694-50286713 None:intergenic 50.0%
AGTTGAACTTGGGTTCGGCT+CGG + Chr3:50282340-50282359 MsG0380014139.01.T01:CDS 50.0%
ATGACAACCAGCCTTTCCAG+AGG + Chr3:50286126-50286145 MsG0380014139.01.T01:intron 50.0%
ATGCCTAACGCATCCGATGT+GGG + Chr3:50282681-50282700 MsG0380014139.01.T01:intron 50.0%
ATGTAGCCAACCCCACTAAG+TGG - Chr3:50284631-50284650 None:intergenic 50.0%
ATGTGGGGTAAGATGGCACA+TGG - Chr3:50284815-50284834 None:intergenic 50.0%
CAGTAAGCCAGCTGGAGTTA+AGG + Chr3:50286963-50286982 MsG0380014139.01.T01:intron 50.0%
CCTAATCCCACCACTTAGTG+GGG + Chr3:50284618-50284637 MsG0380014139.01.T01:intron 50.0%
CTCTGTCCTGTTGAGCTAAC+TGG - Chr3:50284166-50284185 None:intergenic 50.0%
GAACTGAGAGCGACCTCTTA+AGG + Chr3:50287106-50287125 MsG0380014139.01.T01:intron 50.0%
GAATCCACAGTAGGGTTCTG+TGG - Chr3:50284934-50284953 None:intergenic 50.0%
GAGGTCGCTCTCAGTTCTTT+AGG - Chr3:50287103-50287122 None:intergenic 50.0%
GCCCAAACCTTTGTGGGAAT+TGG + Chr3:50286931-50286950 MsG0380014139.01.T01:intron 50.0%
GCCTAATCCCACCACTTAGT+GGG + Chr3:50284617-50284636 MsG0380014139.01.T01:intron 50.0%
GCGCAATAGAGGAGCTAAAC+AGG + Chr3:50285857-50285876 MsG0380014139.01.T01:CDS 50.0%
GCTTTGCTAGTGACCAAGAG+AGG + Chr3:50285335-50285354 MsG0380014139.01.T01:CDS 50.0%
GGCCATCTCACATCCAATGT+GGG - Chr3:50286693-50286712 None:intergenic 50.0%
GGTACTATCTTCAGCGCCAT+TGG - Chr3:50283530-50283549 None:intergenic 50.0%
GGTCCTATGCATGGATCTCA+AGG + Chr3:50283248-50283267 MsG0380014139.01.T01:CDS 50.0%
GTCCCACATTGGATGTGAGA+TGG + Chr3:50286688-50286707 MsG0380014139.01.T01:intron 50.0%
TATGCCTAACGCATCCGATG+TGG + Chr3:50282680-50282699 MsG0380014139.01.T01:intron 50.0%
TGAGACGAGGAGTAAGGTAC+TGG + Chr3:50284235-50284254 MsG0380014139.01.T01:intron 50.0%
TGATCCACAGAACCCTACTG+TGG + Chr3:50284927-50284946 MsG0380014139.01.T01:intron 50.0%
TGTGGGGTAAGATGGCACAT+GGG - Chr3:50284814-50284833 None:intergenic 50.0%
TTCTCCTCTCACTCTCTGGT+TGG + Chr3:50286266-50286285 MsG0380014139.01.T01:intron 50.0%
! CTAAGTGGTGGGATTAGGCT+TGG - Chr3:50284616-50284635 None:intergenic 50.0%
! CTATCTGAGGTCTCGGACTT+AGG - Chr3:50283493-50283512 None:intergenic 50.0%
! GAGTCGAACCGAGTTGAACT+TGG + Chr3:50282329-50282348 MsG0380014139.01.T01:CDS 50.0%
! GTTTTGCAAGGGTCGTGAGT+CGG - Chr3:50285145-50285164 None:intergenic 50.0%
! TCACCTCACAGCCAGTTTTG+TGG + Chr3:50286743-50286762 MsG0380014139.01.T01:intron 50.0%
! TGACAGTAGGTCCTCTGGAA+AGG - Chr3:50286140-50286159 None:intergenic 50.0%
! TTTTGCAAGGGTCGTGAGTC+GGG - Chr3:50285144-50285163 None:intergenic 50.0%
!! ACCTCACAGCCAGTTTTGTG+GGG + Chr3:50286745-50286764 MsG0380014139.01.T01:intron 50.0%
!! CACCTCACAGCCAGTTTTGT+GGG + Chr3:50286744-50286763 MsG0380014139.01.T01:intron 50.0%
!!! CTCTCTGGTTGGCCCTTTTT+TGG + Chr3:50286277-50286296 MsG0380014139.01.T01:intron 50.0%
ACCCCACAAAACTGGCTGTG+AGG - Chr3:50286749-50286768 None:intergenic 55.0%
AGCCAACCCCACTAAGTGGT+GGG - Chr3:50284627-50284646 None:intergenic 55.0%
AGCTCAACAGGACAGAGCTG+TGG + Chr3:50284169-50284188 MsG0380014139.01.T01:CDS 55.0%
AGTCCCACATCGGATGCGTT+AGG - Chr3:50282687-50282706 None:intergenic 55.0%
ATCCCACCACTTAGTGGGGT+TGG + Chr3:50284622-50284641 MsG0380014139.01.T01:intron 55.0%
ATCTGAGAGCAGATGAGGGG+GGG - Chr3:50288229-50288248 None:intergenic 55.0%
GTCAGCACCTTAACTCCAGC+TGG - Chr3:50286973-50286992 None:intergenic 55.0%
GTGGGGTAAGATGGCACATG+GGG - Chr3:50284813-50284832 None:intergenic 55.0%
TAGCCAACCCCACTAAGTGG+TGG - Chr3:50284628-50284647 None:intergenic 55.0%
! AGTAGGTCCTCTGGAAAGGC+TGG - Chr3:50286136-50286155 None:intergenic 55.0%
! CCCCACTAAGTGGTGGGATT+AGG - Chr3:50284621-50284640 None:intergenic 55.0%
! GGAGGTCTTTGGGAGCTACA+AGG - Chr3:50284851-50284870 None:intergenic 55.0%
AGGGCCAACCAGAGAGTGAG+AGG - Chr3:50286273-50286292 None:intergenic 60.0%
GGTCGTGAGTCGGGACAGAA+AGG - Chr3:50285135-50285154 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 50282327 50288397 50282327 ID=MsG0380014139.01;Name=MsG0380014139.01
Chr3 mRNA 50282327 50288397 50282327 ID=MsG0380014139.01.T01;Parent=MsG0380014139.01;Name=MsG0380014139.01.T01;_AED=0.43;_eAED=0.49;_QI=0|0.85|0.75|1|1|1|8|279|379
Chr3 exon 50282327 50282465 50282327 ID=MsG0380014139.01.T01:exon:9654;Parent=MsG0380014139.01.T01
Chr3 exon 50283204 50283340 50283204 ID=MsG0380014139.01.T01:exon:9655;Parent=MsG0380014139.01.T01
Chr3 exon 50283433 50283576 50283433 ID=MsG0380014139.01.T01:exon:9656;Parent=MsG0380014139.01.T01
Chr3 exon 50284050 50284250 50284050 ID=MsG0380014139.01.T01:exon:9657;Parent=MsG0380014139.01.T01
Chr3 exon 50285316 50285462 50285316 ID=MsG0380014139.01.T01:exon:9658;Parent=MsG0380014139.01.T01
Chr3 exon 50285535 50285663 50285535 ID=MsG0380014139.01.T01:exon:9659;Parent=MsG0380014139.01.T01
Chr3 exon 50285748 50285878 50285748 ID=MsG0380014139.01.T01:exon:9660;Parent=MsG0380014139.01.T01
Chr3 exon 50288007 50288397 50288007 ID=MsG0380014139.01.T01:exon:9661;Parent=MsG0380014139.01.T01
Chr3 CDS 50282327 50282465 50282327 ID=MsG0380014139.01.T01:cds;Parent=MsG0380014139.01.T01
Chr3 CDS 50283204 50283340 50283204 ID=MsG0380014139.01.T01:cds;Parent=MsG0380014139.01.T01
Chr3 CDS 50283433 50283576 50283433 ID=MsG0380014139.01.T01:cds;Parent=MsG0380014139.01.T01
Chr3 CDS 50284050 50284250 50284050 ID=MsG0380014139.01.T01:cds;Parent=MsG0380014139.01.T01
Chr3 CDS 50285316 50285462 50285316 ID=MsG0380014139.01.T01:cds;Parent=MsG0380014139.01.T01
Chr3 CDS 50285535 50285663 50285535 ID=MsG0380014139.01.T01:cds;Parent=MsG0380014139.01.T01
Chr3 CDS 50285748 50285878 50285748 ID=MsG0380014139.01.T01:cds;Parent=MsG0380014139.01.T01
Chr3 CDS 50288007 50288118 50288007 ID=MsG0380014139.01.T01:cds;Parent=MsG0380014139.01.T01
Chr3 three_prime_UTR 50288119 50288397 50288119 ID=MsG0380014139.01.T01:three_prime_utr;Parent=MsG0380014139.01.T01
Gene Sequence

>MsG0380014139.01.T01

ATGAGTCGAACCGAGTTGAACTTGGGTTCGGCTCGGCTCGACTCGTTAAGAATTGAATCAGCTCGAAACTCGGCTCGAGTTCGTCACGAACTTTTATTTTGGCTCAAATTCGACTCGATTCAAGCTCGCGAACAACTAGGTTGTTATATGCTTACACATTTGTTGACCACTTCTTTTCAGATCGGTCCTATGCATGGATCTCAAGGTAGTAAGGCAAAAGTTAAAGTTCGAGTTCAACTAAATCTGCATGGCATTTTCAGTATTGATTCAGCTACATTGATCAAGGATCGCACGGATGATGATCATTCAAATTTTGATGCAATGGATGTTGATCCTAAGTCCGAGACCTCAGATAGTACCAATTCTGTTGCCAATGGCGCTGAAGATAGTACCAATAAGCGTGATTCTCCACAAAGTTATGCAGATTGTCTAAGAAAAGATAAGGCGAACAGAAGGATTCCTATTGCAGTGAATGAGAATTTCTATGGTGGAATGACAATGGAAGAGATTTCTGAAGCCCATGAAAAAGAACTCCAGTTAGCTCAACAGGACAGAGCTGTGGAGCTAACCAAAGAAAAGAAGAACACCTTGGAGTCCTATGTCTATGAGACGAGGAGTAAGCTCTTCAACACATATCGGAGCTTTGCTAGTGACCAAGAGAGGGATGTCATATCTAGGAGTTTGCAAGAGACTGAGGATTGGCTTTATGAGGACGGTGATGATGAAACTGAACACGCTTATACCTCAAAACTAGAAGATCTGAAAAAGCTGGTGGATCCAATTGAGATTCGGTACAAAGATGATGAAGAAAGAACACAAGCTATAAAAGATTTATCAAAATTCATTTCAGATATTCGCAAGTTTGCAGATTCCGTTCCACCCCAGAAAAAAGAACAGATCATTAATATTAGCAATGAAGCAGAGCATTGGCTAACAGAGAAGGTGCAACAACAAGAATCTTATCCTAAGAATGTCGACCCAATATTATGGTCAAGTCATATTAAGAGCGCAATAGAGGAGCTAAACAGATCAATGCACAACATAATGAAATCCAAGCCAACTTCAGAAGACGAAGATGATAAAGACAAGACAGACGACGAAGATGACAAAGACAAGATGGATTCTTCCAATCATTCGTGA

Protein sequence

>MsG0380014139.01.T01

MSRTELNLGSARLDSLRIESARNSARVRHELLFWLKFDSIQAREQLGCYMLTHLLTTSFQIGPMHGSQGSKAKVKVRVQLNLHGIFSIDSATLIKDRTDDDHSNFDAMDVDPKSETSDSTNSVANGAEDSTNKRDSPQSYADCLRKDKANRRIPIAVNENFYGGMTMEEISEAHEKELQLAQQDRAVELTKEKKNTLESYVYETRSKLFNTYRSFASDQERDVISRSLQETEDWLYEDGDDETEHAYTSKLEDLKKLVDPIEIRYKDDEERTQAIKDLSKFISDIRKFADSVPPQKKEQIINISNEAEHWLTEKVQQQESYPKNVDPILWSSHIKSAIEELNRSMHNIMKSKPTSEDEDDKDKTDDEDDKDKMDSSNHS*