AlfalfaGEDB | MsG0280007607.01

M. sativa cultivar ZhongmuNo.1 / MsG0280007607.01

KEGG: K20472
GO: -
PFAM: PF01217

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007607.01.T01	CAI29267.1	95.58	181	7	1	9	188	2	182	3.41E-121	350

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007607.01.T01	Q940S5	75.568	176	43	0	13	188	2	177	4.14E-95	276

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007607.01.T01	Q5QQ31	95.580	181	7	1	9	188	2	182	1.63e-121	350

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080049051.01	MsG0280007607.01	0.803920	2.768585e-49	1.408708e-46
MsG0080049052.01	MsG0280007607.01	0.815696	8.098711e-52	5.623373e-49
MsG0080049059.01	MsG0280007607.01	0.802174	6.359378e-49	3.094210e-46
MsG0180000550.01	MsG0280007607.01	0.814369	1.595990e-51	1.068885e-48
MsG0180001043.01	MsG0280007607.01	0.822845	1.904779e-53	1.612907e-50
MsG0180001795.01	MsG0280007607.01	0.801520	8.662462e-49	4.145467e-46
MsG0180002482.01	MsG0280007607.01	0.821834	3.269680e-53	2.690080e-50
MsG0180002912.01	MsG0280007607.01	0.816984	4.171139e-52	3.000334e-49
MsG0180003409.01	MsG0280007607.01	0.825487	4.563586e-54	4.165348e-51
MsG0180004388.01	MsG0280007607.01	0.815426	9.299875e-52	6.409804e-49
MsG0180004566.01	MsG0280007607.01	0.817168	3.791938e-52	2.741148e-49
MsG0180004886.01	MsG0280007607.01	-0.807976	3.885685e-50	2.194840e-47
MsG0180005664.01	MsG0280007607.01	0.806792	6.926375e-50	3.793688e-47
MsG0180006016.01	MsG0280007607.01	0.803259	3.796713e-49	1.899160e-46
MsG0180006069.01	MsG0280007607.01	0.820803	5.654295e-53	4.519630e-50
MsG0280006407.01	MsG0280007607.01	0.824187	9.244328e-54	8.129897e-51
MsG0280006544.01	MsG0280007607.01	0.828137	1.062528e-54	1.046915e-51
MsG0280007607.01	MsG0280007609.01	0.850587	1.542190e-60	3.035537e-57
MsG0280007607.01	MsG0280007715.01	0.808435	3.101122e-50	1.773082e-47
MsG0280007607.01	MsG0280009109.01	0.820652	6.125137e-53	4.874905e-50
MsG0280007607.01	MsG0280010389.01	0.815833	7.547663e-52	5.260199e-49
MsG0280007607.01	MsG0280010391.01	0.802902	4.499591e-49	2.230388e-46
MsG0280007607.01	MsG0280010695.01	-0.803841	2.875700e-49	1.460190e-46
MsG0280007607.01	MsG0280010707.01	0.804700	1.904924e-49	9.888351e-47
MsG0280007607.01	MsG0380012661.01	-0.806152	9.450435e-50	5.092208e-47
MsG0280007607.01	MsG0380015779.01	0.812516	4.076374e-51	2.597220e-48
MsG0280007607.01	MsG0380017135.01	-0.829002	6.566169e-55	6.634162e-52
MsG0280007607.01	MsG0380017286.01	0.801922	7.162190e-49	3.462561e-46
MsG0280007607.01	MsG0380017998.01	0.831817	1.346103e-55	1.477441e-52
MsG0280007607.01	MsG0480018126.01	0.807108	5.938047e-50	3.278967e-47
MsG0280007607.01	MsG0480018641.01	0.813238	2.832563e-51	1.839568e-48
MsG0280007607.01	MsG0480018970.01	0.823574	1.287527e-53	1.112846e-50
MsG0280007607.01	MsG0480021731.01	0.828427	9.046702e-55	8.989465e-52
MsG0280007607.01	MsG0480021953.01	0.803128	4.041240e-49	2.014635e-46
MsG0280007607.01	MsG0480022274.01	0.842848	2.011976e-58	3.089823e-55
MsG0280007607.01	MsG0480022480.01	0.842113	3.152292e-58	4.731219e-55
MsG0280007607.01	MsG0480022707.01	0.808965	2.389667e-50	1.385376e-47
MsG0280007607.01	MsG0480022768.01	0.805521	1.282467e-49	6.799133e-47
MsG0280007607.01	MsG0480022795.01	0.800696	1.276835e-48	5.984157e-46
MsG0280007607.01	MsG0480023361.01	0.804430	2.168196e-49	1.117665e-46
MsG0280007607.01	MsG0480023707.01	0.835063	2.086978e-56	2.523267e-53
MsG0280007607.01	MsG0480023869.01	-0.805877	1.079462e-49	5.775757e-47
MsG0280007607.01	MsG0480023947.01	0.810070	1.383688e-50	8.260671e-48
MsG0280007607.01	MsG0580024073.01	0.808392	3.167741e-50	1.809124e-47
MsG0280007607.01	MsG0580025134.01	0.813549	2.420020e-51	1.585192e-48
MsG0280007607.01	MsG0580025155.01	0.801153	1.029776e-48	4.882788e-46
MsG0280007607.01	MsG0580026771.01	0.821654	3.599951e-53	2.946529e-50
MsG0280007607.01	MsG0580029668.01	-0.845866	3.107761e-59	5.251747e-56
MsG0280007607.01	MsG0680031265.01	0.807716	4.411776e-50	2.475147e-47
MsG0280007607.01	MsG0780038495.01	0.885272	9.378353e-72	6.396447e-68
MsG0280007607.01	MsG0780038645.01	0.831754	1.395129e-55	1.528402e-52
MsG0280007607.01	MsG0780039841.01	0.824487	7.859569e-54	6.971471e-51
MsG0280007607.01	MsG0780040858.01	0.806382	8.450793e-50	4.580247e-47
MsG0280007607.01	MsG0780040861.01	0.823888	1.086972e-53	9.479325e-51
MsG0280007607.01	MsG0880041843.01	0.840876	6.674938e-58	9.638480e-55
MsG0280007607.01	MsG0880042349.01	0.849022	4.220777e-60	7.895310e-57
MsG0280007607.01	MsG0880042543.01	0.841868	3.660572e-58	5.451326e-55
MsG0280007607.01	MsG0880043002.01	0.819485	1.133295e-52	8.732742e-50
MsG0280007607.01	MsG0880043246.01	0.813455	2.537276e-51	1.657826e-48
MsG0280007607.01	MsG0880044486.01	0.830056	3.639589e-55	3.792287e-52
MsG0280007607.01	MsG0880046753.01	0.812155	4.886464e-51	3.083379e-48
MsG0280007607.01	MsG0880047374.01	0.839967	1.154063e-57	1.620142e-54

PPI

Gene1	Gene2	Type
MsG0780036185.01	MsG0280007607.01	PPI
MsG0280007607.01	MsG0480018256.01	PPI
MsG0480018256.01	MsG0280007607.01	PPI
MsG0280007607.01	MsG0480021241.01	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007607.01.T01	MTR_2g028750	97.727	176	4	0	13	188	30	205	7.98e-125	350
MsG0280007607.01.T01	MTR_8g017630	75.287	174	43	0	14	187	6	179	7.27e-92	266
MsG0280007607.01.T01	MTR_0350s0010	68.478	184	51	1	11	187	36	219	7.21e-86	252
MsG0280007607.01.T01	MTR_7g009640	75.000	128	32	0	18	145	2	129	1.70e-70	211
MsG0280007607.01.T01	MTR_8g018030	65.000	60	21	0	14	73	7	66	6.73e-23	88.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007607.01.T01	AT1G60970	75.568	176	43	0	13	188	2	177	4.22e-96	276
MsG0280007607.01.T01	AT3G09800	69.444	180	51	1	8	187	3	178	9.68e-92	266
MsG0280007607.01.T01	AT3G09800	69.444	180	51	1	8	187	3	178	9.68e-92	266
MsG0280007607.01.T01	AT3G09800	69.444	180	51	1	8	187	3	178	9.68e-92	266
MsG0280007607.01.T01	AT4G08520	71.512	172	49	0	16	187	9	180	2.54e-90	262
MsG0280007607.01.T01	AT3G09800	69.444	180	51	1	8	187	83	258	3.52e-90	265
MsG0280007607.01.T01	AT3G09800	71.311	122	35	0	66	187	18	139	5.25e-61	186
MsG0280007607.01.T01	AT3G09800	71.311	122	35	0	66	187	18	139	5.25e-61	186

Find 48 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACTTTCCCAGCTATAGTATT+TGG	0.152147	2:-17983378	None:intergenic
TGTGAAGAACATCTTTCTTT+TGG	0.214773	2:+17980774	MsG0280007607.01.T01:CDS
GATCTTCACTTCTTTGTTAC+TGG	0.233863	2:+17981099	MsG0280007607.01.T01:CDS
AAAAGCTTCCTTTGCACTAT+TGG	0.246999	2:-17980848	None:intergenic
GAGCTGAACCTACGCCTTGC+AGG	0.287008	2:+17980505	MsG0280007607.01.T01:CDS
TAAATGAACTACATGAAGTT+TGG	0.305980	2:+17983579	MsG0280007607.01.T01:exon
GGAAGTAATAGTACAGATTC+TGG	0.313738	2:+17983402	MsG0280007607.01.T01:CDS
ATTCAGTTGGCCTCCTGCTC+AGG	0.331455	2:+17981175	MsG0280007607.01.T01:CDS
TGCAATATCATGAAATTTAA+CGG	0.365592	2:-17983767	None:intergenic
TGGAGCTCCTTTGTCTGAAC+AGG	0.379095	2:+17983422	MsG0280007607.01.T01:CDS
TTCATGTAGTTCATTTAAGA+AGG	0.405897	2:-17983573	None:intergenic
ACTACTCCAAATACTATAGC+TGG	0.418010	2:+17983372	MsG0280007607.01.T01:CDS
GAAGGAAGCACTGGAGAACT+TGG	0.432743	2:+17981332	MsG0280007607.01.T01:CDS
ATCGATGAAATTATTGATGC+AGG	0.435159	2:+17981372	MsG0280007607.01.T01:CDS
CTAAGTATTTCACAGATGAT+TGG	0.437609	2:+17980821	MsG0280007607.01.T01:CDS
TAACAAAGAAGTGAAGATCT+TGG	0.449077	2:-17981095	None:intergenic
GCAATATCATGAAATTTAAC+GGG	0.463179	2:-17983766	None:intergenic
ATCTTCACTTCTTTGTTACT+GGG	0.467745	2:+17981100	MsG0280007607.01.T01:CDS
AGATTCTTAAAACCAAATAT+AGG	0.467950	2:-17983632	None:intergenic
AATACTATAGCTGGGAAAGT+TGG	0.483190	2:+17983381	MsG0280007607.01.T01:CDS
TATCTTATCCTCAGTTCTGC+AGG	0.484498	2:+17981143	MsG0280007607.01.T01:CDS
AACATCGGTATTCAAGTTTG+AGG	0.493912	2:-17983670	None:intergenic
GCTTCCTTTGCACTATTGGT+TGG	0.497397	2:-17980844	None:intergenic
TATCAGAAAACAACCTGAGC+AGG	0.503709	2:-17981188	None:intergenic
GTCAAGCATTGGCCTCAGCT+AGG	0.506234	2:+17983533	MsG0280007607.01.T01:CDS
AGAAAGATGTTCTTCACAGA+AGG	0.510757	2:-17980769	None:intergenic
GCAGACACTAAGTCAAGCAT+TGG	0.516098	2:+17983522	MsG0280007607.01.T01:intron
TCAAGCATTGGCCTCAGCTA+GGG	0.518417	2:+17983534	MsG0280007607.01.T01:CDS
CAAGTCCTAATGTGGGCAGC+GGG	0.519613	2:+17980483	None:intergenic
CTCACCTTCAGTGCGAGCAT+TGG	0.533277	2:-17980902	None:intergenic
CAGAGGCAATGTGGACAAGA+AGG	0.539823	2:+17981314	MsG0280007607.01.T01:intron
TGTGGACAAGAAGGAAGCAC+TGG	0.543071	2:+17981323	MsG0280007607.01.T01:CDS
AAGACCAATGCTCGCACTGA+AGG	0.548318	2:+17980898	MsG0280007607.01.T01:CDS
AACTACATGAAGTTTGGCAA+TGG	0.560097	2:+17983585	MsG0280007607.01.T01:exon
TCATGTAGTTCATTTAAGAA+GGG	0.561156	2:-17983572	None:intergenic
GAAAGATGTTCTTCACAGAA+GGG	0.568085	2:-17980768	None:intergenic
CTACTCCAAATACTATAGCT+GGG	0.575062	2:+17983373	MsG0280007607.01.T01:CDS
TCGATGAAATTATTGATGCA+GGG	0.579583	2:+17981373	MsG0280007607.01.T01:CDS
AGCTGAACCTACGCCTTGCA+GGG	0.586236	2:+17980506	MsG0280007607.01.T01:CDS
ACAAGTCCTAATGTGGGCAG+CGG	0.586302	2:+17980482	None:intergenic
CAACATACCTGTTCAGACAA+AGG	0.612109	2:-17983429	None:intergenic
TGCAAGATGTTCCCTAGCTG+AGG	0.615227	2:-17983545	None:intergenic
ACTCATACCCTGCAAGGCGT+AGG	0.617921	2:-17980513	None:intergenic
GGATTCTGACGGGAGACGTG+TGG	0.626708	2:+17980795	MsG0280007607.01.T01:CDS
GAGTTGACTCATACCCTGCA+AGG	0.628340	2:-17980519	None:intergenic
CAGAAAACAACCTGAGCAGG+AGG	0.629118	2:-17981185	None:intergenic
TTTCACAGCACAAGTAACAT+CGG	0.651808	2:-17983685	None:intergenic
TTGGCCAACCAATAGTGCAA+AGG	0.655463	2:+17980840	MsG0280007607.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTTTTTAAAAATAAAATAAA+AGG	-	Chr2:17982376-17982395	None:intergenic	0.0%
!!	AAAAAAAAAAACTAATAACA+TGG	-	Chr2:17982584-17982603	None:intergenic	10.0%
!!	TATAATTATTGAAATCACAA+TGG	-	Chr2:17982107-17982126	None:intergenic	15.0%
!!	TTAATTAAACTCACTTATTT+GGG	+	Chr2:17983480-17983499	MsG0280007607.01.T01:intron	15.0%
!!	TTTAATTAAACTCACTTATT+TGG	+	Chr2:17983479-17983498	MsG0280007607.01.T01:intron	15.0%
!!!	AAATTTTTTTTGCTATCAAA+GGG	-	Chr2:17983462-17983481	None:intergenic	15.0%
!!!	ATCTTTTCATTTAATAACTA+TGG	-	Chr2:17981805-17981824	None:intergenic	15.0%
!!!	TAAATTTTTTTTGCTATCAA+AGG	-	Chr2:17983463-17983482	None:intergenic	15.0%
!!	AAATCATTAGAAAGAAAATC+AGG	+	Chr2:17981624-17981643	MsG0280007607.01.T01:intron	20.0%
!!	AATCATTAGAAAGAAAATCA+GGG	+	Chr2:17981625-17981644	MsG0280007607.01.T01:intron	20.0%
!!	AGATTCTTAAAACCAAATAT+AGG	-	Chr2:17983635-17983654	None:intergenic	20.0%
!!	TGCAATATCATGAAATTTAA+CGG	-	Chr2:17983770-17983789	None:intergenic	20.0%
!!!	ACTTTTGTTTTTCCTATATT+TGG	+	Chr2:17983620-17983639	MsG0280007607.01.T01:three_prime_UTR	20.0%
!!!	TATTATGTACTTGTTTTTAG+AGG	-	Chr2:17982661-17982680	None:intergenic	20.0%
!!!	TTTATTTTGTGAGAAGAATT+TGG	+	Chr2:17980948-17980967	MsG0280007607.01.T01:intron	20.0%
!	AAACAAGTACATAATACTAG+AGG	+	Chr2:17982665-17982684	MsG0280007607.01.T01:intron	25.0%
!	AACTATATACAACTCAAGTT+CGG	+	Chr2:17982797-17982816	MsG0280007607.01.T01:intron	25.0%
!	AATAATTATAAGTCCCACTT+AGG	+	Chr2:17982117-17982136	MsG0280007607.01.T01:intron	25.0%
!	AATGCACACTAGTAATTATA+AGG	-	Chr2:17982426-17982445	None:intergenic	25.0%
!	ACTTCCATTATTTGTTTGTT+AGG	+	Chr2:17981435-17981454	MsG0280007607.01.T01:intron	25.0%
!	AGAACCTAACAAACAAATAA+TGG	-	Chr2:17981442-17981461	None:intergenic	25.0%
!	ATAAAAAATACCTCTAGACA+AGG	-	Chr2:17980933-17980952	None:intergenic	25.0%
!	ATAATTATAAGTCCCACTTA+GGG	+	Chr2:17982118-17982137	MsG0280007607.01.T01:intron	25.0%
!	ATATGTATCCATCAAATCAA+AGG	-	Chr2:17983169-17983188	None:intergenic	25.0%
!	ATCAAAGGAAATGAATAAGA+AGG	-	Chr2:17983154-17983173	None:intergenic	25.0%
!	CTTTCAAGAAGAGTTTATAA+AGG	-	Chr2:17983066-17983085	None:intergenic	25.0%
!	GAATAATACTGCACAAAATA+TGG	-	Chr2:17983347-17983366	None:intergenic	25.0%
!	GCAATATCATGAAATTTAAC+GGG	-	Chr2:17983769-17983788	None:intergenic	25.0%
!	TAAATGAACTACATGAAGTT+TGG	+	Chr2:17983579-17983598	MsG0280007607.01.T01:exon	25.0%
!	TAACTTTAAACACATTAGAG+AGG	-	Chr2:17982509-17982528	None:intergenic	25.0%
!	TATCTATGTGTGATATTCAA+AGG	+	Chr2:17981221-17981240	MsG0280007607.01.T01:intron	25.0%
!	TCATGTAGTTCATTTAAGAA+GGG	-	Chr2:17983575-17983594	None:intergenic	25.0%
!	TGCTAAAATTCAAATACAGT+GGG	-	Chr2:17982956-17982975	None:intergenic	25.0%
!	TTCATGTAGTTCATTTAAGA+AGG	-	Chr2:17983576-17983595	None:intergenic	25.0%
!	TTGCTAAAATTCAAATACAG+TGG	-	Chr2:17982957-17982976	None:intergenic	25.0%
!	TTTAGATCAAAACGATAGTT+TGG	+	Chr2:17981829-17981848	MsG0280007607.01.T01:intron	25.0%
!!	ATTCAAATCTACACTGATTA+AGG	-	Chr2:17981654-17981673	None:intergenic	25.0%
!!	CTTTTAACAAGGGTTTTTAA+GGG	-	Chr2:17983036-17983055	None:intergenic	25.0%
!!	TCTTTTAACAAGGGTTTTTA+AGG	-	Chr2:17983037-17983056	None:intergenic	25.0%
!!	TGATTTGATGGATACATATA+GGG	+	Chr2:17983170-17983189	MsG0280007607.01.T01:intron	25.0%
!!	TTGATTTGATGGATACATAT+AGG	+	Chr2:17983169-17983188	MsG0280007607.01.T01:intron	25.0%
!!	TTGTATTGTGTGTTATTGTT+AGG	+	Chr2:17980738-17980757	MsG0280007607.01.T01:intron	25.0%
!!!	ATTCATTTCCTTTGATTTGA+TGG	+	Chr2:17983158-17983177	MsG0280007607.01.T01:intron	25.0%
!!!	GTTTGATACGAACTATTTTT+TGG	+	Chr2:17982224-17982243	MsG0280007607.01.T01:intron	25.0%
	AACTAATAACATGGTTGTGT+AGG	-	Chr2:17982575-17982594	None:intergenic	30.0%
	AAGAAGGAAGTTGAGAAAAA+AGG	-	Chr2:17983138-17983157	None:intergenic	30.0%
	AATTGTGATAGAGAGGAATT+GGG	-	Chr2:17983196-17983215	None:intergenic	30.0%
	ACAACAAAAAAGAAACCAAG+AGG	-	Chr2:17982039-17982058	None:intergenic	30.0%
	ACAGAAAAAATAGATGTCGT+TGG	-	Chr2:17981713-17981732	None:intergenic	30.0%
	ACCAAGAGGAAATAGAATTA+AGG	-	Chr2:17982025-17982044	None:intergenic	30.0%
	AGAAGAGTTTATAAAGGTGA+AGG	-	Chr2:17983060-17983079	None:intergenic	30.0%
	AGATGAATATTTAGTGAGAC+TGG	-	Chr2:17983322-17983341	None:intergenic	30.0%
	ATAAAAACAAAAGTCGCACA+AGG	+	Chr2:17981584-17981603	MsG0280007607.01.T01:intron	30.0%
	ATAAACTCCATCCAAGATTT+AGG	-	Chr2:17981993-17982012	None:intergenic	30.0%
	ATCGATGAAATTATTGATGC+AGG	+	Chr2:17981372-17981391	MsG0280007607.01.T01:CDS	30.0%
	ATCTTCACTTCTTTGTTACT+GGG	+	Chr2:17981100-17981119	MsG0280007607.01.T01:CDS	30.0%
	ATGAATATTTAGTGAGACTG+GGG	-	Chr2:17983320-17983339	None:intergenic	30.0%
	CAAAGAAGAGAGAAATATGA+AGG	-	Chr2:17983265-17983284	None:intergenic	30.0%
	CTAAGTATTTCACAGATGAT+TGG	+	Chr2:17980821-17980840	MsG0280007607.01.T01:CDS	30.0%
	GAAATATGAAGGTGAAAATG+AGG	-	Chr2:17983254-17983273	None:intergenic	30.0%
	GATGAATATTTAGTGAGACT+GGG	-	Chr2:17983321-17983340	None:intergenic	30.0%
	TAAAAACAACCCATCAAAGT+AGG	-	Chr2:17981019-17981038	None:intergenic	30.0%
	TAACAAAGAAGTGAAGATCT+TGG	-	Chr2:17981098-17981117	None:intergenic	30.0%
	TCCTTAATTCTATTTCCTCT+TGG	+	Chr2:17982021-17982040	MsG0280007607.01.T01:intron	30.0%
	TCGATGAAATTATTGATGCA+GGG	+	Chr2:17981373-17981392	MsG0280007607.01.T01:CDS	30.0%
	TCTTCCAAAATTCAAATCGT+AGG	+	Chr2:17981487-17981506	MsG0280007607.01.T01:intron	30.0%
	TGAAAAATTAGTGAAACCTC+AGG	-	Chr2:17981689-17981708	None:intergenic	30.0%
	TGAAAATGAGGTAAAAACCT+AGG	-	Chr2:17983242-17983261	None:intergenic	30.0%
	TGCTAAAAATTGAGTGAAGT+TGG	+	Chr2:17980646-17980665	MsG0280007607.01.T01:intron	30.0%
	TGTATATGACCTACTTTGAT+GGG	+	Chr2:17981007-17981026	MsG0280007607.01.T01:intron	30.0%
	TTGTATATGACCTACTTTGA+TGG	+	Chr2:17981006-17981025	MsG0280007607.01.T01:intron	30.0%
!	ATCTTTCTTTTGGATTCTGA+CGG	+	Chr2:17980784-17980803	MsG0280007607.01.T01:CDS	30.0%
!	CTCTTTGGAAGTTTGAATAA+TGG	+	Chr2:17981877-17981896	MsG0280007607.01.T01:intron	30.0%
!	CTGGCTCGATAATATATATT+AGG	-	Chr2:17982757-17982776	None:intergenic	30.0%
!	TGAAGATAAGAGATTTTGTG+AGG	+	Chr2:17980692-17980711	MsG0280007607.01.T01:intron	30.0%
!	TGCTCCTTATTTATTTGTCT+CGG	+	Chr2:17983289-17983308	MsG0280007607.01.T01:intron	30.0%
!	TGTGAAGAACATCTTTCTTT+TGG	+	Chr2:17980774-17980793	MsG0280007607.01.T01:CDS	30.0%
!	TTTAAAGTTCACGAACAACT+CGG	+	Chr2:17982262-17982281	MsG0280007607.01.T01:intron	30.0%
!!	CGATTTGAATTTTGGAAGAA+AGG	-	Chr2:17981486-17981505	None:intergenic	30.0%
!!!	AATTTTGGTTGCACATATGT+TGG	+	Chr2:17982542-17982561	MsG0280007607.01.T01:intron	30.0%
!!!	CTTGGTTTCTTTTTTGTTGT+GGG	+	Chr2:17982039-17982058	MsG0280007607.01.T01:intron	30.0%
!!!	GTTTTAGAACCATTAGTTTG+TGG	+	Chr2:17980577-17980596	MsG0280007607.01.T01:intron	30.0%
!!!	TCTTGGTTTCTTTTTTGTTG+TGG	+	Chr2:17982038-17982057	MsG0280007607.01.T01:intron	30.0%
!!!	TTTTTTTGCTATCAAAGGGA+AGG	-	Chr2:17983458-17983477	None:intergenic	30.0%
	AAAAGCTTCCTTTGCACTAT+TGG	-	Chr2:17980851-17980870	None:intergenic	35.0%
	AACCAAAATTAGTCCCACAT+CGG	-	Chr2:17982532-17982551	None:intergenic	35.0%
	AACTACATGAAGTTTGGCAA+TGG	+	Chr2:17983585-17983604	MsG0280007607.01.T01:exon	35.0%
	AATACTATAGCTGGGAAAGT+TGG	+	Chr2:17983381-17983400	MsG0280007607.01.T01:CDS	35.0%
	AATTCAAATACAGTGGGACT+AGG	-	Chr2:17982950-17982969	None:intergenic	35.0%
	ACCATGACTTAACCTTAGAA+GGG	+	Chr2:17981963-17981982	MsG0280007607.01.T01:intron	35.0%
	ACTACTCCAAATACTATAGC+TGG	+	Chr2:17983372-17983391	MsG0280007607.01.T01:CDS	35.0%
	ACTTTCCCAGCTATAGTATT+TGG	-	Chr2:17983381-17983400	None:intergenic	35.0%
	AGAAAGATGTTCTTCACAGA+AGG	-	Chr2:17980772-17980791	None:intergenic	35.0%
	AGAAGCCAGTAATATTGTCA+AGG	-	Chr2:17981279-17981298	None:intergenic	35.0%
	ATGGCAAATAATGAGATCAC+TGG	-	Chr2:17981786-17981805	None:intergenic	35.0%
	ATTCAAATACAGTGGGACTA+GGG	-	Chr2:17982949-17982968	None:intergenic	35.0%
	CAATTGTGATAGAGAGGAAT+TGG	-	Chr2:17983197-17983216	None:intergenic	35.0%
	CAGTAACAATTGTGATAGAG+AGG	-	Chr2:17983203-17983222	None:intergenic	35.0%
	CGACTCGATAAGAATTAACT+CGG	+	Chr2:17982184-17982203	MsG0280007607.01.T01:intron	35.0%
	CTACTCCAAATACTATAGCT+GGG	+	Chr2:17983373-17983392	MsG0280007607.01.T01:CDS	35.0%
	GAAAGATGTTCTTCACAGAA+GGG	-	Chr2:17980771-17980790	None:intergenic	35.0%
	GAAGTCCTTGACAATATTAC+TGG	+	Chr2:17981271-17981290	MsG0280007607.01.T01:intron	35.0%
	GACAATTAACTCGTTGATCT+TGG	-	Chr2:17982880-17982899	None:intergenic	35.0%
	GAGTTGTATATAGTTCGACT+CGG	-	Chr2:17982792-17982811	None:intergenic	35.0%
	GATCTTCACTTCTTTGTTAC+TGG	+	Chr2:17981099-17981118	MsG0280007607.01.T01:CDS	35.0%
	GGAAGTAATAGTACAGATTC+TGG	+	Chr2:17983402-17983421	MsG0280007607.01.T01:CDS	35.0%
	TAAGCGCTACAGTAGTAATA+AGG	-	Chr2:17982453-17982472	None:intergenic	35.0%
	TCCAAACTCTAAACCAATCA+GGG	-	Chr2:17981763-17981782	None:intergenic	35.0%
	TGTTTGAACGTTTATCTCTG+AGG	-	Chr2:17983101-17983120	None:intergenic	35.0%
	TTTCACAGCACAAGTAACAT+CGG	-	Chr2:17983688-17983707	None:intergenic	35.0%
!	AACATCGGTATTCAAGTTTG+AGG	-	Chr2:17983673-17983692	None:intergenic	35.0%
!	AAGGTGAAGGTCTTTTAACA+AGG	-	Chr2:17983047-17983066	None:intergenic	35.0%
!	AGCTCCTACGATTTGAATTT+TGG	-	Chr2:17981494-17981513	None:intergenic	35.0%
!	AGGTGAAGGTCTTTTAACAA+GGG	-	Chr2:17983046-17983065	None:intergenic	35.0%
!	ATGTCTTTTCTGGACAAATG+CGG	-	Chr2:17982991-17983010	None:intergenic	35.0%
!	GTGTTTAAAGTTACCGATGT+GGG	+	Chr2:17982516-17982535	MsG0280007607.01.T01:intron	35.0%
!	TCTTTCTTTTGGATTCTGAC+GGG	+	Chr2:17980785-17980804	MsG0280007607.01.T01:CDS	35.0%
!	TCTTTTTGTTGAACCTTGCT+TGG	+	Chr2:17980618-17980637	MsG0280007607.01.T01:intron	35.0%
!	TGTGTTTAAAGTTACCGATG+TGG	+	Chr2:17982515-17982534	MsG0280007607.01.T01:intron	35.0%
!	TTTTAGCACAAAACCAAGCA+AGG	-	Chr2:17980634-17980653	None:intergenic	35.0%
!!	AACCATTAGTTTGTGGAAGT+TGG	+	Chr2:17980584-17980603	MsG0280007607.01.T01:intron	35.0%
!!	ACCATTAGTTTGTGGAAGTT+GGG	+	Chr2:17980585-17980604	MsG0280007607.01.T01:intron	35.0%
!!	GATTTTGTGAGGTGTTTTTG+AGG	+	Chr2:17980703-17980722	MsG0280007607.01.T01:intron	35.0%
!!!	CAGGCATTTTTTGATTCAGT+TGG	+	Chr2:17981162-17981181	MsG0280007607.01.T01:CDS	35.0%
!!!	TGATGGGTTGTTTTTATGTG+TGG	+	Chr2:17981023-17981042	MsG0280007607.01.T01:intron	35.0%
	AAAAAATGCCTGCAGAACTG+AGG	-	Chr2:17981154-17981173	None:intergenic	40.0%
	AAAACAAAAGTCGCACAAGG+CGG	+	Chr2:17981587-17981606	MsG0280007607.01.T01:intron	40.0%
	AGGGCCGAGACAAATAAATA+AGG	-	Chr2:17983296-17983315	None:intergenic	40.0%
	ATATTTAGTGAGACTGGGGA+AGG	-	Chr2:17983316-17983335	None:intergenic	40.0%
	CAACATACCTGTTCAGACAA+AGG	-	Chr2:17983432-17983451	None:intergenic	40.0%
	CCAAACTCTAAACCAATCAG+GGG	-	Chr2:17981762-17981781	None:intergenic	40.0%
	CCATGACTTAACCTTAGAAG+GGG	+	Chr2:17981964-17981983	MsG0280007607.01.T01:intron	40.0%
	GAACCAACTCGACAATAGTT+CGG	-	Chr2:17982913-17982932	None:intergenic	40.0%
	GACCATGACTTAACCTTAGA+AGG	+	Chr2:17981962-17981981	MsG0280007607.01.T01:intron	40.0%
	GACCATGACTTAACCTTAGA+AGG	-	Chr2:17981981-17981962	None:intergenic	40.0%
	GACTTAGTGTCTGCAAAAGA+AGG	-	Chr2:17983516-17983535	None:intergenic	40.0%
	GATAGTTTGGATGAAGCACA+AGG	+	Chr2:17981842-17981861	MsG0280007607.01.T01:intron	40.0%
	GATGAAGCACAAGGTTACAT+GGG	+	Chr2:17981851-17981870	MsG0280007607.01.T01:intron	40.0%
	GCATGAGTCTTTCATTTCCT+AGG	+	Chr2:17983222-17983241	MsG0280007607.01.T01:intron	40.0%
	GGAAGTTGAGAAAAAAGGCT+TGG	-	Chr2:17983133-17983152	None:intergenic	40.0%
	GTCCAAACTCTAAACCAATC+AGG	-	Chr2:17981764-17981783	None:intergenic	40.0%
	GTGTTATCAATCTGTCACCA+TGG	+	Chr2:17981243-17981262	MsG0280007607.01.T01:intron	40.0%
	TATCAGAAAACAACCTGAGC+AGG	-	Chr2:17981191-17981210	None:intergenic	40.0%
	TATCTTATCCTCAGTTCTGC+AGG	+	Chr2:17981143-17981162	MsG0280007607.01.T01:CDS	40.0%
	TATTTAGTGAGACTGGGGAA+GGG	-	Chr2:17983315-17983334	None:intergenic	40.0%
	TCAATCTGTCACCATGGAAT+TGG	+	Chr2:17981249-17981268	MsG0280007607.01.T01:intron	40.0%
	TGACTTAACCTTAGAAGGCA+TGG	-	Chr2:17981912-17981931	None:intergenic	40.0%
	TGAGTCAACTCCTTACCAAT+TGG	+	Chr2:17980531-17980550	MsG0280007607.01.T01:intron	40.0%
!	TACCGATGTGGGACTAATTT+TGG	+	Chr2:17982527-17982546	MsG0280007607.01.T01:intron	40.0%
!	TCAGAGGGAAATGTCTTTTC+TGG	-	Chr2:17983001-17983020	None:intergenic	40.0%
!	TGCCTCTGGAGGAAAAAAAT+GGG	-	Chr2:17981302-17981321	None:intergenic	40.0%
!	TTGCCTCTGGAGGAAAAAAA+TGG	-	Chr2:17981303-17981322	None:intergenic	40.0%
!	TTTTCTGGACAAATGCGGTT+TGG	-	Chr2:17982986-17983005	None:intergenic	40.0%
!!	ACAAGGGTTTTTAAGGGTGA+AGG	-	Chr2:17983030-17983049	None:intergenic	40.0%
!!	CCATTAGTTTGTGGAAGTTG+GGG	+	Chr2:17980586-17980605	MsG0280007607.01.T01:intron	40.0%
!!	GAACTATTGTCGAGTTGGTT+CGG	+	Chr2:17982912-17982931	MsG0280007607.01.T01:intron	40.0%
!!	TGCCTTCTAAGGTTAAGTCA+TGG	+	Chr2:17981912-17981931	MsG0280007607.01.T01:intron	40.0%
!!	TGTATATAGTTCGACTCGGT+TGG	-	Chr2:17982788-17982807	None:intergenic	40.0%
!!!	GTTGTTTTTATGTGTGGCAG+CGG	+	Chr2:17981029-17981048	MsG0280007607.01.T01:intron	40.0%
	AGAAGGGGTGACCTAAATCT+TGG	+	Chr2:17981979-17981998	MsG0280007607.01.T01:intron	45.0%
	AGGGTGAAGGATAAGATCAG+AGG	-	Chr2:17983017-17983036	None:intergenic	45.0%
	AGGTTACATGGGTGTCTCTT+TGG	+	Chr2:17981862-17981881	MsG0280007607.01.T01:intron	45.0%
	AGTTCACGAACAACTCGGTT+CGG	+	Chr2:17982267-17982286	MsG0280007607.01.T01:intron	45.0%
	CAGCTCAAGTTCAGCTCATT+TGG	+	Chr2:17982846-17982865	MsG0280007607.01.T01:intron	45.0%
	CCCCAACTTCCACAAACTAA+TGG	-	Chr2:17980589-17980608	None:intergenic	45.0%
	CTGAAGTCAGTCAGTCCAAT+TGG	-	Chr2:17980549-17980568	None:intergenic	45.0%
	GAAATCACAATGGAGCAGCA+AGG	-	Chr2:17982097-17982116	None:intergenic	45.0%
	GAATACCTGATACGTACCTG+AGG	+	Chr2:17981670-17981689	MsG0280007607.01.T01:intron	45.0%
	GATTTAGGTCACCCCTTCTA+AGG	-	Chr2:17981978-17981997	None:intergenic	45.0%
	GCAGACACTAAGTCAAGCAT+TGG	+	Chr2:17983522-17983541	MsG0280007607.01.T01:intron	45.0%
	GCAGGGTATGTCATTCTCAT+AGG	+	Chr2:17981390-17981409	MsG0280007607.01.T01:intron	45.0%
	GCGCTACAGTAGTAATAAGG+TGG	-	Chr2:17982450-17982469	None:intergenic	45.0%
	GCTTCCTTTGCACTATTGGT+TGG	-	Chr2:17980847-17980866	None:intergenic	45.0%
	GGATGAAGCACAAGGTTACA+TGG	+	Chr2:17981850-17981869	MsG0280007607.01.T01:intron	45.0%
	GGGTGAAGGATAAGATCAGA+GGG	-	Chr2:17983016-17983035	None:intergenic	45.0%
	GTCAAGGACTTCCAATTCCA+TGG	-	Chr2:17981263-17981282	None:intergenic	45.0%
	GTCAGTCAGTCCAATTGGTA+AGG	-	Chr2:17980544-17980563	None:intergenic	45.0%
	GTGCTAGAACTATGGATGTG+CGG	-	Chr2:17982075-17982094	None:intergenic	45.0%
	GTTCCGAACTATTGTCGAGT+TGG	+	Chr2:17982907-17982926	MsG0280007607.01.T01:intron	45.0%
	TGAAACCTCAGGTACGTATC+AGG	-	Chr2:17981678-17981697	None:intergenic	45.0%
	TTATAAGTCCCACTTAGGGC+TGG	+	Chr2:17982122-17982141	MsG0280007607.01.T01:intron	45.0%
	TTGGCCAACCAATAGTGCAA+AGG	+	Chr2:17980840-17980859	MsG0280007607.01.T01:CDS	45.0%
!	TTTTTCCTCCAGAGGCAATG+TGG	+	Chr2:17981305-17981324	MsG0280007607.01.T01:intron	45.0%
!!	CCCCTGATTGGTTTAGAGTT+TGG	+	Chr2:17981759-17981778	MsG0280007607.01.T01:intron	45.0%
!!	CCCCTTCTAAGGTTAAGTCA+TGG	-	Chr2:17981967-17981986	None:intergenic	45.0%
!!!	CTCCCATTTTTTTCCTCCAG+AGG	+	Chr2:17981297-17981316	MsG0280007607.01.T01:intron	45.0%
	AAATACAGTGGGACTAGGGC+TGG	-	Chr2:17982945-17982964	None:intergenic	50.0%
	AAGACCAATGCTCGCACTGA+AGG	+	Chr2:17980898-17980917	MsG0280007607.01.T01:CDS	50.0%
	AGGTTCAACTCGTTTGCTCG+AGG	+	Chr2:17982296-17982315	MsG0280007607.01.T01:intron	50.0%
	CAGAAAACAACCTGAGCAGG+AGG	-	Chr2:17981188-17981207	None:intergenic	50.0%
	CAGAGGCAATGTGGACAAGA+AGG	+	Chr2:17981314-17981333	MsG0280007607.01.T01:intron	50.0%
	CTTCTTGTCCACATTGCCTC+TGG	-	Chr2:17981316-17981335	None:intergenic	50.0%
	GCTCATTTCCAGCCCTAAGT+GGG	-	Chr2:17982133-17982152	None:intergenic	50.0%
	GGGGTGACCTAAATCTTGGA+TGG	+	Chr2:17981983-17982002	MsG0280007607.01.T01:intron	50.0%
	GTGAGTGCTTCCTTGTCTAG+AGG	+	Chr2:17980920-17980939	MsG0280007607.01.T01:intron	50.0%
	TGCAAGATGTTCCCTAGCTG+AGG	-	Chr2:17983548-17983567	None:intergenic	50.0%
	TGGAGCTCCTTTGTCTGAAC+AGG	+	Chr2:17983422-17983441	MsG0280007607.01.T01:CDS	50.0%
!	GAGTTGACTCATACCCTGCA+AGG	-	Chr2:17980522-17980541	None:intergenic	50.0%
!	GCAGCAAGGTGCTAGAACTA+TGG	-	Chr2:17982083-17982102	None:intergenic	50.0%
!	GCTCTAAGCCATGCCTTCTA+AGG	+	Chr2:17981901-17981920	MsG0280007607.01.T01:intron	50.0%
!	TGTGGACAAGAAGGAAGCAC+TGG	+	Chr2:17981323-17981342	MsG0280007607.01.T01:CDS	50.0%
!!	ACCAATCAGGGGCATCTAAC+TGG	-	Chr2:17981751-17981770	None:intergenic	50.0%
!!	GAAGGAAGCACTGGAGAACT+TGG	+	Chr2:17981332-17981351	MsG0280007607.01.T01:CDS	50.0%
!!	TCAAGCATTGGCCTCAGCTA+GGG	+	Chr2:17983534-17983553	MsG0280007607.01.T01:CDS	50.0%
	ACTCATACCCTGCAAGGCGT+AGG	-	Chr2:17980516-17980535	None:intergenic	55.0%
	AGCTGAACCTACGCCTTGCA+GGG	+	Chr2:17980506-17980525	MsG0280007607.01.T01:CDS	55.0%
	CTCACCTTCAGTGCGAGCAT+TGG	-	Chr2:17980905-17980924	None:intergenic	55.0%
	CTTGTCCACATTGCCTCTGG+AGG	-	Chr2:17981313-17981332	None:intergenic	55.0%
	GCCAGTTAGATGCCCCTGAT+TGG	+	Chr2:17981747-17981766	MsG0280007607.01.T01:intron	55.0%
	GGCTCATTTCCAGCCCTAAG+TGG	-	Chr2:17982134-17982153	None:intergenic	55.0%
!	ATTCAGTTGGCCTCCTGCTC+AGG	+	Chr2:17981175-17981194	MsG0280007607.01.T01:CDS	55.0%
!	CAGACGAGTTCGACTCGACT+CGG	-	Chr2:17982155-17982174	None:intergenic	55.0%
!	GACTCGGTTGGTTCATGAGC+TGG	-	Chr2:17982776-17982795	None:intergenic	55.0%
!!	ACAACTCGGTTCGGCTCGAT+AGG	+	Chr2:17982276-17982295	MsG0280007607.01.T01:intron	55.0%
!!	GTCAAGCATTGGCCTCAGCT+AGG	+	Chr2:17983533-17983552	MsG0280007607.01.T01:CDS	55.0%
	GAGCTGAACCTACGCCTTGC+AGG	+	Chr2:17980505-17980524	MsG0280007607.01.T01:CDS	60.0%
	GGATTCTGACGGGAGACGTG+TGG	+	Chr2:17980795-17980814	MsG0280007607.01.T01:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	17980492	17983795	17980492	ID=MsG0280007607.01;Name=MsG0280007607.01
Chr2	mRNA	17980492	17983795	17980492	ID=MsG0280007607.01.T01;Parent=MsG0280007607.01;Name=MsG0280007607.01.T01;_AED=0.48;_eAED=0.51;_QI=0\|0.6\|0.66\|1\|1\|1\|6\|210\|188
Chr2	exon	17980492	17980527	17980492	ID=MsG0280007607.01.T01:exon:10868;Parent=MsG0280007607.01.T01
Chr2	exon	17980760	17980919	17980760	ID=MsG0280007607.01.T01:exon:10869;Parent=MsG0280007607.01.T01
Chr2	exon	17981049	17981196	17981049	ID=MsG0280007607.01.T01:exon:10870;Parent=MsG0280007607.01.T01
Chr2	exon	17981317	17981394	17981317	ID=MsG0280007607.01.T01:exon:10871;Parent=MsG0280007607.01.T01
Chr2	exon	17983359	17983443	17983359	ID=MsG0280007607.01.T01:exon:10872;Parent=MsG0280007607.01.T01
Chr2	exon	17983526	17983795	17983526	ID=MsG0280007607.01.T01:exon:10873;Parent=MsG0280007607.01.T01
Chr2	CDS	17980492	17980527	17980492	ID=MsG0280007607.01.T01:cds;Parent=MsG0280007607.01.T01
Chr2	CDS	17980760	17980919	17980760	ID=MsG0280007607.01.T01:cds;Parent=MsG0280007607.01.T01
Chr2	CDS	17981049	17981196	17981049	ID=MsG0280007607.01.T01:cds;Parent=MsG0280007607.01.T01
Chr2	CDS	17981317	17981394	17981317	ID=MsG0280007607.01.T01:cds;Parent=MsG0280007607.01.T01
Chr2	CDS	17983359	17983443	17983359	ID=MsG0280007607.01.T01:cds;Parent=MsG0280007607.01.T01
Chr2	CDS	17983526	17983585	17983526	ID=MsG0280007607.01.T01:cds;Parent=MsG0280007607.01.T01
Chr2	three_prime_UTR	17983586	17983795	17983586	ID=MsG0280007607.01.T01:three_prime_utr;Parent=MsG0280007607.01.T01

Gene Sequence

>MsG0280007607.01.T01

ATGTGGGCAGCGGGAGCTGAACCTACGCCTTGCAGGGAGTTGAACCCTTCTGTGAAGAACATCTTTCTTTTGGATTCTGACGGGAGACGTGTGGCAGCTAAGTATTTCACAGATGATTGGCCAACCAATAGTGCAAAGGAAGCTTTTGAGAAGCTTGTATTCAACAAGACTCAGAAGACCAATGCTCGCACTGAAGCGGAGATAACAATGTTTGAGAATAACATCGTTGTTTACAAGTTTGTCCAAGATCTTCACTTCTTTGTTACTGGGAGTGATGACGAAAACGAGCTTATCTTATCCTCAGTTCTGCAGGCATTTTTTGATTCAGTTGGCCTCCTGCTCAGAGGCAATGTGGACAAGAAGGAAGCACTGGAGAACTTGGATCTCATTCTATTGTGCATCGATGAAATTATTGATGCAGGTATTATTCTTGAAACTACTCCAAATACTATAGCTGGGAAAGTTGGAAGTAATAGTACAGATTCTGGAGCTCCTTTGTCTGAACAGACACTAAGTCAAGCATTGGCCTCAGCTAGGGAACATCTTGCAAGATCCCTTCTTAAATGA

Protein sequence

>MsG0280007607.01.T01

MWAAGAEPTPCRELNPSVKNIFLLDSDGRRVAAKYFTDDWPTNSAKEAFEKLVFNKTQKTNARTEAEITMFENNIVVYKFVQDLHFFVTGSDDENELILSSVLQAFFDSVGLLLRGNVDKKEALENLDLILLCIDEIIDAGIILETTPNTIAGKVGSNSTDSGAPLSEQTLSQALASAREHLARSLLK*