Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040858.01.T01 | XP_024625861.1 | 81.25 | 288 | 17 | 1 | 1 | 288 | 1 | 251 | 9.13E-159 | 452 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040858.01.T01 | A0A396H500 | 81.250 | 288 | 17 | 1 | 1 | 288 | 1 | 251 | 4.36e-159 | 452 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047869.01 | MsG0780040858.01 | 0.818548 | 1.850392e-52 | 1.389343e-49 |
| MsG0080048804.01 | MsG0780040858.01 | 0.820296 | 7.394496e-53 | 5.827770e-50 |
| MsG0080048817.01 | MsG0780040858.01 | 0.826523 | 2.589762e-54 | 2.434493e-51 |
| MsG0080049013.01 | MsG0780040858.01 | -0.803561 | 3.286817e-49 | 1.657042e-46 |
| MsG0180000139.01 | MsG0780040858.01 | 0.802926 | 4.448131e-49 | 2.206184e-46 |
| MsG0180000152.01 | MsG0780040858.01 | 0.873541 | 1.357842e-67 | 5.915287e-64 |
| MsG0180000550.01 | MsG0780040858.01 | 0.838805 | 2.312338e-57 | 3.131898e-54 |
| MsG0180000614.01 | MsG0780040858.01 | 0.827263 | 1.723117e-54 | 1.655136e-51 |
| MsG0180000679.01 | MsG0780040858.01 | 0.841261 | 5.290309e-58 | 7.730082e-55 |
| MsG0180001063.01 | MsG0780040858.01 | 0.808626 | 2.824360e-50 | 1.622733e-47 |
| MsG0180001141.01 | MsG0780040858.01 | 0.808589 | 2.875510e-50 | 1.650595e-47 |
| MsG0180001795.01 | MsG0780040858.01 | 0.848219 | 7.047153e-60 | 1.283976e-56 |
| MsG0180002458.01 | MsG0780040858.01 | 0.801812 | 7.545747e-49 | 3.637884e-46 |
| MsG0180002482.01 | MsG0780040858.01 | 0.881592 | 2.110994e-70 | 1.244223e-66 |
| MsG0180002504.01 | MsG0780040858.01 | 0.802452 | 5.573850e-49 | 2.731303e-46 |
| MsG0180002940.01 | MsG0780040858.01 | -0.805948 | 1.043230e-49 | 5.592054e-47 |
| MsG0180003124.01 | MsG0780040858.01 | 0.801659 | 8.113428e-49 | 3.896248e-46 |
| MsG0180003651.01 | MsG0780040858.01 | 0.810619 | 1.053442e-50 | 6.380772e-48 |
| MsG0180003669.01 | MsG0780040858.01 | 0.803763 | 2.985461e-49 | 1.512835e-46 |
| MsG0180003864.01 | MsG0780040858.01 | 0.804152 | 2.477800e-49 | 1.268215e-46 |
| MsG0180003952.01 | MsG0780040858.01 | 0.846222 | 2.487954e-59 | 4.251910e-56 |
| MsG0180004108.01 | MsG0780040858.01 | 0.823299 | 1.492600e-53 | 1.280116e-50 |
| MsG0180004148.01 | MsG0780040858.01 | 0.810857 | 9.355436e-51 | 5.703000e-48 |
| MsG0180004149.01 | MsG0780040858.01 | 0.844439 | 7.553273e-59 | 1.219407e-55 |
| MsG0180004259.01 | MsG0780040858.01 | 0.815813 | 7.626167e-52 | 5.312227e-49 |
| MsG0180004451.01 | MsG0780040858.01 | -0.812614 | 3.879659e-51 | 2.478259e-48 |
| MsG0180004820.01 | MsG0780040858.01 | 0.826191 | 3.105439e-54 | 2.892044e-51 |
| MsG0180004886.01 | MsG0780040858.01 | -0.851102 | 1.104292e-60 | 2.210736e-57 |
| MsG0180005193.01 | MsG0780040858.01 | 0.848149 | 7.369040e-60 | 1.339521e-56 |
| MsG0180005334.01 | MsG0780040858.01 | 0.812223 | 4.724597e-51 | 2.986746e-48 |
| MsG0180005424.01 | MsG0780040858.01 | 0.860143 | 2.536973e-63 | 6.865177e-60 |
| MsG0180005664.01 | MsG0780040858.01 | 0.813540 | 2.430849e-51 | 1.591879e-48 |
| MsG0180005851.01 | MsG0780040858.01 | 0.806855 | 6.717330e-50 | 3.685271e-47 |
| MsG0180005954.01 | MsG0780040858.01 | 0.805131 | 1.548272e-49 | 8.126870e-47 |
| MsG0180006144.01 | MsG0780040858.01 | 0.856922 | 2.318167e-62 | 5.622321e-59 |
| MsG0180006220.01 | MsG0780040858.01 | 0.836466 | 9.206356e-57 | 1.161203e-53 |
| MsG0280006407.01 | MsG0780040858.01 | 0.800439 | 1.440499e-48 | 6.707587e-46 |
| MsG0280006411.01 | MsG0780040858.01 | 0.807015 | 6.213967e-50 | 3.423154e-47 |
| MsG0280006422.01 | MsG0780040858.01 | 0.801132 | 1.040212e-48 | 4.929659e-46 |
| MsG0780040523.01 | MsG0780040858.01 | -0.808129 | 3.604441e-50 | 2.044259e-47 |
| MsG0780040596.01 | MsG0780040858.01 | 0.863960 | 1.714194e-64 | 5.292167e-61 |
| MsG0780040858.01 | MsG0780041402.01 | 0.845468 | 3.986547e-59 | 6.650058e-56 |
| MsG0780040858.01 | MsG0780041456.01 | 0.840519 | 8.282421e-58 | 1.182749e-54 |
| MsG0780040858.01 | MsG0780041507.01 | 0.832350 | 9.939983e-56 | 1.108050e-52 |
| MsG0780040858.01 | MsG0880041843.01 | 0.821177 | 4.637274e-53 | 3.745549e-50 |
| MsG0780040858.01 | MsG0880041851.01 | 0.845640 | 3.580823e-59 | 6.006450e-56 |
| MsG0780040858.01 | MsG0880042129.01 | 0.824459 | 7.980059e-54 | 7.072191e-51 |
| MsG0780040858.01 | MsG0880042134.01 | 0.800090 | 1.696227e-48 | 7.828705e-46 |
| MsG0780040858.01 | MsG0880042294.01 | 0.830470 | 2.884457e-55 | 3.041593e-52 |
| MsG0780040858.01 | MsG0880042966.01 | 0.811486 | 6.833973e-51 | 4.235796e-48 |
| MsG0780040858.01 | MsG0880043144.01 | 0.819485 | 1.133197e-52 | 8.732030e-50 |
| MsG0780040858.01 | MsG0880043303.01 | 0.855119 | 7.809874e-62 | 1.783870e-58 |
| MsG0780040858.01 | MsG0880043465.01 | 0.808246 | 3.402458e-50 | 1.935788e-47 |
| MsG0780040858.01 | MsG0880043905.01 | 0.816208 | 6.224533e-52 | 4.383161e-49 |
| MsG0780040858.01 | MsG0880044079.01 | 0.805019 | 1.633898e-49 | 8.551523e-47 |
| MsG0780040858.01 | MsG0880044085.01 | 0.802433 | 5.623035e-49 | 2.754187e-46 |
| MsG0780040858.01 | MsG0880044394.01 | 0.831240 | 1.867014e-55 | 2.014026e-52 |
| MsG0780040858.01 | MsG0880044542.01 | 0.809728 | 1.638994e-50 | 9.697914e-48 |
| MsG0780040858.01 | MsG0880045042.01 | 0.807692 | 4.463908e-50 | 2.502720e-47 |
| MsG0780040858.01 | MsG0880045555.01 | -0.846723 | 1.815554e-59 | 3.154103e-56 |
| MsG0780040858.01 | MsG0880045653.01 | 0.813196 | 2.892699e-51 | 1.876561e-48 |
| MsG0780040858.01 | MsG0880045937.01 | 0.824815 | 6.580427e-54 | 5.892685e-51 |
| MsG0780040858.01 | MsG0880046122.01 | 0.804754 | 1.855968e-49 | 9.648256e-47 |
| MsG0780040858.01 | MsG0880046126.01 | 0.888453 | 5.827451e-73 | 4.517184e-69 |
| MsG0780040858.01 | MsG0880046973.01 | 0.814636 | 1.392950e-51 | 9.396763e-49 |
| MsG0780040858.01 | MsG0880047165.01 | 0.875404 | 3.163875e-68 | 1.475212e-64 |
| MsG0780040858.01 | MsG0880047191.01 | 0.818080 | 2.361955e-52 | 1.750541e-49 |
| MsG0780040858.01 | MsG0880047427.01 | 0.811843 | 5.716000e-51 | 3.576278e-48 |
| MsG0780040858.01 | MsG0880047448.01 | 0.841959 | 3.463544e-58 | 5.172755e-55 |
| MsG0280010776.01 | MsG0780040858.01 | 0.802670 | 5.024991e-49 | 2.476059e-46 |
| MsG0280010980.01 | MsG0780040858.01 | 0.808280 | 3.346230e-50 | 1.905474e-47 |
| MsG0280011032.01 | MsG0780040858.01 | 0.811840 | 5.724802e-51 | 3.581501e-48 |
| MsG0280011059.01 | MsG0780040858.01 | -0.807963 | 3.909736e-50 | 2.207657e-47 |
| MsG0280011086.01 | MsG0780040858.01 | 0.806609 | 7.569643e-50 | 4.126467e-47 |
| MsG0280011093.01 | MsG0780040858.01 | 0.804172 | 2.453989e-49 | 1.256654e-46 |
| MsG0280011156.01 | MsG0780040858.01 | 0.825875 | 3.693307e-54 | 3.408701e-51 |
| MsG0280011194.01 | MsG0780040858.01 | 0.817782 | 2.758950e-52 | 2.028241e-49 |
| MsG0280011304.01 | MsG0780040858.01 | 0.821623 | 3.658290e-53 | 2.991650e-50 |
| MsG0280011388.01 | MsG0780040858.01 | 0.818560 | 1.839097e-52 | 1.381250e-49 |
| MsG0380011609.01 | MsG0780040858.01 | 0.807012 | 6.222736e-50 | 3.427743e-47 |
| MsG0380011676.01 | MsG0780040858.01 | 0.806238 | 9.063647e-50 | 4.894691e-47 |
| MsG0380012661.01 | MsG0780040858.01 | -0.883308 | 5.010167e-71 | 3.159249e-67 |
| MsG0380014647.01 | MsG0780040858.01 | 0.853787 | 1.896284e-61 | 4.145205e-58 |
| MsG0680031712.01 | MsG0780040858.01 | 0.803622 | 3.193273e-49 | 1.612277e-46 |
| MsG0680033792.01 | MsG0780040858.01 | 0.820596 | 6.310852e-53 | 5.014893e-50 |
| MsG0680035268.01 | MsG0780040858.01 | 0.807438 | 5.053858e-50 | 2.814935e-47 |
| MsG0480018603.01 | MsG0780040858.01 | 0.851023 | 1.162091e-60 | 2.320582e-57 |
| MsG0480018894.01 | MsG0780040858.01 | 0.803183 | 3.935943e-49 | 1.965002e-46 |
| MsG0480018906.01 | MsG0780040858.01 | 0.827494 | 1.516943e-54 | 1.466855e-51 |
| MsG0480019163.01 | MsG0780040858.01 | -0.812832 | 3.476209e-51 | 2.233100e-48 |
| MsG0480020136.01 | MsG0780040858.01 | 0.840153 | 1.032120e-57 | 1.457372e-54 |
| MsG0480020839.01 | MsG0780040858.01 | 0.837346 | 5.486253e-57 | 7.105880e-54 |
| MsG0480020874.01 | MsG0780040858.01 | 0.863994 | 1.672412e-64 | 5.169349e-61 |
| MsG0480021448.01 | MsG0780040858.01 | 0.841991 | 3.395745e-58 | 5.076596e-55 |
| MsG0480021451.01 | MsG0780040858.01 | 0.805871 | 1.083058e-49 | 5.794187e-47 |
| MsG0480021453.01 | MsG0780040858.01 | 0.822781 | 1.971797e-53 | 1.666589e-50 |
| MsG0480021464.01 | MsG0780040858.01 | 0.809782 | 1.596313e-50 | 9.458727e-48 |
| MsG0480021536.01 | MsG0780040858.01 | 0.824469 | 7.937674e-54 | 7.036766e-51 |
| MsG0480021558.01 | MsG0780040858.01 | 0.819666 | 1.030454e-52 | 7.980067e-50 |
| MsG0480021750.01 | MsG0780040858.01 | 0.844502 | 7.264347e-59 | 1.175162e-55 |
| MsG0480021853.01 | MsG0780040858.01 | 0.812065 | 5.113306e-51 | 3.218397e-48 |
| MsG0480022035.01 | MsG0780040858.01 | 0.818843 | 1.585934e-52 | 1.200557e-49 |
| MsG0480022052.01 | MsG0780040858.01 | -0.824798 | 6.639191e-54 | 5.942638e-51 |
| MsG0480022151.01 | MsG0780040858.01 | -0.801804 | 7.573711e-49 | 3.650571e-46 |
| MsG0480022222.01 | MsG0780040858.01 | 0.852318 | 4.993284e-61 | 1.039453e-57 |
| MsG0480022707.01 | MsG0780040858.01 | 0.894402 | 2.550824e-75 | 2.531784e-71 |
| MsG0480022768.01 | MsG0780040858.01 | 0.865591 | 5.285643e-65 | 1.729165e-61 |
| MsG0480022795.01 | MsG0780040858.01 | 0.858814 | 6.363524e-63 | 1.644936e-59 |
| MsG0480022877.01 | MsG0780040858.01 | 0.829126 | 6.129127e-55 | 6.215726e-52 |
| MsG0480023636.01 | MsG0780040858.01 | 0.844952 | 5.495858e-59 | 9.017906e-56 |
| MsG0480023707.01 | MsG0780040858.01 | 0.810128 | 1.344482e-50 | 8.038585e-48 |
| MsG0480023814.01 | MsG0780040858.01 | 0.825913 | 3.616716e-54 | 3.341673e-51 |
| MsG0580024051.01 | MsG0780040858.01 | 0.801811 | 7.548863e-49 | 3.639312e-46 |
| MsG0580024468.01 | MsG0780040858.01 | 0.827865 | 1.235434e-54 | 1.207640e-51 |
| MsG0580024698.01 | MsG0780040858.01 | 0.818607 | 1.794880e-52 | 1.349729e-49 |
| MsG0580025135.01 | MsG0780040858.01 | 0.802804 | 4.714364e-49 | 2.331093e-46 |
| MsG0580025638.01 | MsG0780040858.01 | 0.815286 | 9.991153e-52 | 6.859878e-49 |
| MsG0580026047.01 | MsG0780040858.01 | 0.806321 | 8.707726e-50 | 4.712169e-47 |
| MsG0380015027.01 | MsG0780040858.01 | 0.829428 | 5.176545e-55 | 5.296562e-52 |
| MsG0380015146.01 | MsG0780040858.01 | 0.814115 | 1.815287e-51 | 1.207403e-48 |
| MsG0380015164.01 | MsG0780040858.01 | 0.831083 | 2.040932e-55 | 2.191578e-52 |
| MsG0380015400.01 | MsG0780040858.01 | 0.808836 | 2.546239e-50 | 1.471060e-47 |
| MsG0380015466.01 | MsG0780040858.01 | 0.818147 | 2.281219e-52 | 1.693884e-49 |
| MsG0380015566.01 | MsG0780040858.01 | 0.861403 | 1.051416e-63 | 2.971754e-60 |
| MsG0380015720.01 | MsG0780040858.01 | 0.810337 | 1.211914e-50 | 7.285528e-48 |
| MsG0380016004.01 | MsG0780040858.01 | 0.848795 | 4.881030e-60 | 9.062022e-57 |
| MsG0380016560.01 | MsG0780040858.01 | 0.801275 | 9.721776e-49 | 4.623774e-46 |
| MsG0380016828.01 | MsG0780040858.01 | -0.833749 | 4.459433e-56 | 5.183478e-53 |
| MsG0380016886.01 | MsG0780040858.01 | 0.888660 | 4.848486e-73 | 3.790010e-69 |
| MsG0380016910.01 | MsG0780040858.01 | 0.836589 | 8.563654e-57 | 1.084055e-53 |
| MsG0380017461.01 | MsG0780040858.01 | 0.800844 | 1.191285e-48 | 5.604445e-46 |
| MsG0380017680.01 | MsG0780040858.01 | 0.837111 | 6.303756e-57 | 8.106557e-54 |
| MsG0380017746.01 | MsG0780040858.01 | 0.810252 | 1.264063e-50 | 7.582452e-48 |
| MsG0380017891.01 | MsG0780040858.01 | -0.809872 | 1.526198e-50 | 9.064412e-48 |
| MsG0480018110.01 | MsG0780040858.01 | 0.802185 | 6.326077e-49 | 3.078794e-46 |
| MsG0480018159.01 | MsG0780040858.01 | 0.803062 | 4.169273e-49 | 2.074947e-46 |
| MsG0480018206.01 | MsG0780040858.01 | 0.800847 | 1.189289e-48 | 5.595568e-46 |
| MsG0480018213.01 | MsG0780040858.01 | 0.806657 | 7.395568e-50 | 4.036386e-47 |
| MsG0480018425.01 | MsG0780040858.01 | 0.812644 | 3.821041e-51 | 2.442761e-48 |
| MsG0580027031.01 | MsG0780040858.01 | 0.802804 | 4.714246e-49 | 2.331038e-46 |
| MsG0580027344.01 | MsG0780040858.01 | 0.817440 | 3.293873e-52 | 2.398975e-49 |
| MsG0580028044.01 | MsG0780040858.01 | 0.846467 | 2.132795e-59 | 3.674847e-56 |
| MsG0580028901.01 | MsG0780040858.01 | 0.807324 | 5.343015e-50 | 2.967242e-47 |
| MsG0580029014.01 | MsG0780040858.01 | 0.835476 | 1.641402e-56 | 2.009422e-53 |
| MsG0580029166.01 | MsG0780040858.01 | 0.834075 | 3.695114e-56 | 4.337423e-53 |
| MsG0580029717.01 | MsG0780040858.01 | 0.811476 | 6.869968e-51 | 4.256907e-48 |
| MsG0680030316.01 | MsG0780040858.01 | 0.825483 | 4.572999e-54 | 4.173429e-51 |
| MsG0680030415.01 | MsG0780040858.01 | 0.820974 | 5.163806e-53 | 4.147588e-50 |
| MsG0280007058.01 | MsG0780040858.01 | -0.861918 | 7.317063e-64 | 2.103929e-60 |
| MsG0280007547.01 | MsG0780040858.01 | 0.807710 | 4.426086e-50 | 2.482712e-47 |
| MsG0280007607.01 | MsG0780040858.01 | 0.806382 | 8.450793e-50 | 4.580247e-47 |
| MsG0280007763.01 | MsG0780040858.01 | 0.800318 | 1.524488e-48 | 7.077135e-46 |
| MsG0280009109.01 | MsG0780040858.01 | 0.828394 | 9.212827e-55 | 9.145755e-52 |
| MsG0280010204.01 | MsG0780040858.01 | 0.827511 | 1.502941e-54 | 1.453976e-51 |
| MsG0680035659.01 | MsG0780040858.01 | 0.850138 | 2.061431e-60 | 3.998178e-57 |
| MsG0680035704.01 | MsG0780040858.01 | 0.823702 | 1.201186e-53 | 1.042192e-50 |
| MsG0780036288.01 | MsG0780040858.01 | 0.803557 | 3.292753e-49 | 1.659881e-46 |
| MsG0780036705.01 | MsG0780040858.01 | 0.809838 | 1.552416e-50 | 9.212090e-48 |
| MsG0780036964.01 | MsG0780040858.01 | 0.813356 | 2.667813e-51 | 1.738364e-48 |
| MsG0780036965.01 | MsG0780040858.01 | 0.804340 | 2.263931e-49 | 1.164360e-46 |
| MsG0780037082.01 | MsG0780040858.01 | 0.814307 | 1.647103e-51 | 1.101325e-48 |
| MsG0780037942.01 | MsG0780040858.01 | 0.809961 | 1.460951e-50 | 8.697249e-48 |
| MsG0780038495.01 | MsG0780040858.01 | 0.808139 | 3.586015e-50 | 2.034387e-47 |
| MsG0780038911.01 | MsG0780040858.01 | 0.834300 | 3.246883e-56 | 3.837297e-53 |
| MsG0780039841.01 | MsG0780040858.01 | 0.815147 | 1.072938e-51 | 7.338161e-49 |
| MsG0780039844.01 | MsG0780040858.01 | 0.815095 | 1.101643e-51 | 7.523844e-49 |
| MsG0780040057.01 | MsG0780040858.01 | 0.805392 | 1.364526e-49 | 7.210511e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0780040858.01 | MsG0180003672.01 | PPI |
| MsG0780040858.01 | MsG0180003712.01 | PPI |
| MsG0780040858.01 | MsG0180003687.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040858.01.T01 | MTR_7g099950 | 81.250 | 288 | 17 | 1 | 1 | 288 | 85 | 335 | 1.80e-161 | 452 |
| MsG0780040858.01.T01 | MTR_1g068825 | 40.068 | 292 | 121 | 6 | 1 | 287 | 1 | 243 | 4.24e-39 | 137 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040858.01.T01 | AT3G53670 | 33.083 | 133 | 83 | 1 | 98 | 230 | 51 | 177 | 6.60e-13 | 66.6 |
| MsG0780040858.01.T01 | AT3G53670 | 33.083 | 133 | 83 | 1 | 98 | 230 | 51 | 177 | 6.60e-13 | 66.6 |
| MsG0780040858.01.T01 | AT2G37480 | 47.126 | 87 | 41 | 2 | 150 | 231 | 85 | 171 | 3.05e-12 | 64.7 |
| MsG0780040858.01.T01 | AT2G37480 | 47.674 | 86 | 40 | 2 | 151 | 231 | 87 | 172 | 3.82e-12 | 64.3 |
Find 54 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATTTATGCACATGAAAT+AGG | 0.221808 | 7:+83504614 | None:intergenic |
| TATGTATTATAAAGGAAATT+TGG | 0.264568 | 7:-83504398 | MsG0780040858.01.T01:three_prime_UTR |
| TCATGGCTTATGTATTATAA+AGG | 0.273130 | 7:-83504406 | MsG0780040858.01.T01:three_prime_UTR |
| TGCTTCCGCAGTTTGAATCT+TGG | 0.342574 | 7:+83504716 | None:intergenic |
| GGCAACGTCGCATGAGGAAT+TGG | 0.368193 | 7:+83505508 | None:intergenic |
| GTAAAATATCTTGAATGCTT+TGG | 0.371014 | 7:-83504637 | MsG0780040858.01.T01:three_prime_UTR |
| CAACAAATCAATACCACATA+TGG | 0.392250 | 7:+83505286 | None:intergenic |
| ATAGGAAATTGACGGTGAAA+TGG | 0.412052 | 7:-83504996 | MsG0780040858.01.T01:CDS |
| TTAATGATGCTTATGTGTAT+TGG | 0.412073 | 7:-83505360 | MsG0780040858.01.T01:CDS |
| TTTATCACGGCTACCTTTCA+AGG | 0.425025 | 7:+83505032 | None:intergenic |
| ACAAGAAACAGCCGAAATCC+AGG | 0.447680 | 7:-83504921 | MsG0780040858.01.T01:CDS |
| TAGGAAATTGACGGTGAAAT+GGG | 0.449608 | 7:-83504995 | MsG0780040858.01.T01:CDS |
| TGGGATTCTCAAGTTATTGA+AGG | 0.461070 | 7:-83504772 | MsG0780040858.01.T01:CDS |
| TCCTCGTCAGACGAGCTTGA+AGG | 0.485645 | 7:+83505487 | None:intergenic |
| GTATATATAGTGAAAAGCTT+GGG | 0.495142 | 7:-83504570 | MsG0780040858.01.T01:three_prime_UTR |
| AAGCAGTCTCGCAACGTTGG+TGG | 0.501681 | 7:-83504820 | MsG0780040858.01.T01:CDS |
| GTGAAAAGCTTGGGATTGTA+TGG | 0.514719 | 7:-83504561 | MsG0780040858.01.T01:three_prime_UTR |
| TGTATATATAGTGAAAAGCT+TGG | 0.519873 | 7:-83504571 | MsG0780040858.01.T01:three_prime_UTR |
| CAGCTTCAAACTGCCTCTGA+AGG | 0.523218 | 7:+83504522 | None:intergenic |
| AAGGCAGATTTGAGCTCCGA+AGG | 0.526871 | 7:+83505051 | None:intergenic |
| AGCTGGCGTTATTCCATATG+TGG | 0.531457 | 7:-83505299 | MsG0780040858.01.T01:intron |
| AGCAGTCTCGCAACGTTGGT+GGG | 0.540201 | 7:-83504819 | MsG0780040858.01.T01:CDS |
| TGCGACACTAGTGTAGGTAT+AGG | 0.544332 | 7:+83504955 | None:intergenic |
| TTCACCGTCAATTTCCTATG+TGG | 0.544822 | 7:+83505000 | None:intergenic |
| AAATGTAAAGAAAGGTAACA+AGG | 0.560400 | 7:-83504878 | MsG0780040858.01.T01:CDS |
| AATGTAAAGAAAGGTAACAA+GGG | 0.568123 | 7:-83504877 | MsG0780040858.01.T01:CDS |
| GAGCTCAAATCTGCCTTGAA+AGG | 0.568787 | 7:-83505045 | MsG0780040858.01.T01:CDS |
| GAAATCTGAACATTTGTCTG+AGG | 0.568873 | 7:-83505632 | MsG0780040858.01.T01:CDS |
| AAATCTGAACATTTGTCTGA+GGG | 0.573710 | 7:-83505631 | MsG0780040858.01.T01:CDS |
| GCCTTCAAGCTCGTCTGACG+AGG | 0.576208 | 7:-83505488 | MsG0780040858.01.T01:CDS |
| TGAACCACATAGGAAATTGA+CGG | 0.581672 | 7:-83505004 | MsG0780040858.01.T01:CDS |
| CTGATCTGTGCAGTAAGTCG+TGG | 0.587620 | 7:-83504792 | MsG0780040858.01.T01:CDS |
| TGCGATGTGCAATGTAGCCA+AGG | 0.589787 | 7:-83505605 | MsG0780040858.01.T01:CDS |
| ATCTGAACATTTGTCTGAGG+GGG | 0.595296 | 7:-83505629 | MsG0780040858.01.T01:CDS |
| CTTGAAGGCAACGTCGCATG+AGG | 0.601933 | 7:+83505502 | None:intergenic |
| AGAAGTGCATTACTCAGTTG+CGG | 0.604827 | 7:-83504671 | MsG0780040858.01.T01:CDS |
| TGATCTGTGCAGTAAGTCGT+GGG | 0.608135 | 7:-83504791 | MsG0780040858.01.T01:CDS |
| AGCTTCAAACTGCCTCTGAA+GGG | 0.608595 | 7:+83504523 | None:intergenic |
| AAGAAGCAGTCTCGCAACGT+TGG | 0.609694 | 7:-83504823 | MsG0780040858.01.T01:CDS |
| TAGCCAAGGAAAACTCAAGT+GGG | 0.611731 | 7:-83505591 | MsG0780040858.01.T01:CDS |
| ATCAAGAGAGTCAAATTCAG+AGG | 0.614512 | 7:+83504747 | None:intergenic |
| ATGTAAAGAAAGGTAACAAG+GGG | 0.626414 | 7:-83504876 | MsG0780040858.01.T01:CDS |
| TGATGAGCAGAATGCTCATG+AGG | 0.641178 | 7:+83505439 | None:intergenic |
| AAGGGGAATTCAACCCGAGG+GGG | 0.642568 | 7:-83504859 | MsG0780040858.01.T01:CDS |
| GAAAGAATCAAAACCCAACA+TGG | 0.643797 | 7:-83505557 | MsG0780040858.01.T01:CDS |
| CGTCGCATGAGGAATTGGAA+AGG | 0.653621 | 7:+83505513 | None:intergenic |
| ACAGTGTGCGACACTAGTGT+AGG | 0.663479 | 7:+83504949 | None:intergenic |
| TGTAGCCAAGATTCAAACTG+CGG | 0.664125 | 7:-83504721 | MsG0780040858.01.T01:CDS |
| GTAGCCAAGGAAAACTCAAG+TGG | 0.667603 | 7:-83505592 | MsG0780040858.01.T01:CDS |
| AATCTGAACATTTGTCTGAG+GGG | 0.684222 | 7:-83505630 | MsG0780040858.01.T01:CDS |
| AACAAGGGGAATTCAACCCG+AGG | 0.692269 | 7:-83504862 | MsG0780040858.01.T01:CDS |
| ACAAGGGGAATTCAACCCGA+GGG | 0.697575 | 7:-83504861 | MsG0780040858.01.T01:CDS |
| AGCCAAGGAAAACTCAAGTG+GGG | 0.705918 | 7:-83505590 | MsG0780040858.01.T01:CDS |
| CAAGGGGAATTCAACCCGAG+GGG | 0.745728 | 7:-83504860 | MsG0780040858.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGGCTAAATTAAAAAAAAAA+CGG | + | Chr7:83504987-83505006 | None:intergenic | 15.0% |
| !! | TATGTATTATAAAGGAAATT+TGG | - | Chr7:83505711-83505730 | MsG0780040858.01.T01:CDS | 15.0% |
| !! | AGTTTAACACTATATTGAAT+AGG | + | Chr7:83504893-83504912 | None:intergenic | 20.0% |
| !! | ATTGAATAGGTAAATTCAAT+AGG | + | Chr7:83504880-83504899 | None:intergenic | 20.0% |
| !! | GAAAAGAAAAATGTAAAGAA+AGG | - | Chr7:83505223-83505242 | MsG0780040858.01.T01:intron | 20.0% |
| !! | GATGTAAAATACATAGAAAA+AGG | + | Chr7:83505031-83505050 | None:intergenic | 20.0% |
| !! | TCAATATAGTGTTAAACTAA+TGG | - | Chr7:83504895-83504914 | MsG0780040858.01.T01:CDS | 20.0% |
| !! | TTTATTTATGCACATGAAAT+AGG | + | Chr7:83505498-83505517 | None:intergenic | 20.0% |
| ! | AAATGTAAAGAAAGGTAACA+AGG | - | Chr7:83505231-83505250 | MsG0780040858.01.T01:intron | 25.0% |
| ! | AATGTAAAGAAAGGTAACAA+GGG | - | Chr7:83505232-83505251 | MsG0780040858.01.T01:intron | 25.0% |
| ! | GTAAAATATCTTGAATGCTT+TGG | - | Chr7:83505472-83505491 | MsG0780040858.01.T01:CDS | 25.0% |
| ! | GTATATATAGTGAAAAGCTT+GGG | - | Chr7:83505539-83505558 | MsG0780040858.01.T01:CDS | 25.0% |
| ! | TCATGGCTTATGTATTATAA+AGG | - | Chr7:83505703-83505722 | MsG0780040858.01.T01:CDS | 25.0% |
| ! | TGTATATATAGTGAAAAGCT+TGG | - | Chr7:83505538-83505557 | MsG0780040858.01.T01:CDS | 25.0% |
| ! | TTAATGATGCTTATGTGTAT+TGG | - | Chr7:83504749-83504768 | MsG0780040858.01.T01:CDS | 25.0% |
| ! | TTGTAACATGAAAAACTTAC+AGG | + | Chr7:83504721-83504740 | None:intergenic | 25.0% |
| !! | AGTTTTTCATGTTACAAAGT+CGG | - | Chr7:83504724-83504743 | MsG0780040858.01.T01:CDS | 25.0% |
| !! | TTCTATGTATTTTACATCAC+AGG | - | Chr7:83505033-83505052 | MsG0780040858.01.T01:CDS | 25.0% |
| !!! | AATTTCTGTTTTGAAAAAGC+TGG | - | Chr7:83504793-83504812 | MsG0780040858.01.T01:CDS | 25.0% |
| !!! | ACACATTTTTGTTTGTAATG+TGG | - | Chr7:83505639-83505658 | MsG0780040858.01.T01:CDS | 25.0% |
| !!! | TTGTTGTTTTTATGCTTTCA+TGG | - | Chr7:83505686-83505705 | MsG0780040858.01.T01:CDS | 25.0% |
| AAATCTGAACATTTGTCTGA+GGG | - | Chr7:83504478-83504497 | MsG0780040858.01.T01:three_prime_UTR | 30.0% | |
| ATGTAAAGAAAGGTAACAAG+GGG | - | Chr7:83505233-83505252 | MsG0780040858.01.T01:intron | 30.0% | |
| CAACAAATCAATACCACATA+TGG | + | Chr7:83504826-83504845 | None:intergenic | 30.0% | |
| TGTCCGAATAACAAAAAGAA+CGG | + | Chr7:83504932-83504951 | None:intergenic | 30.0% | |
| ! | CTTTTCATTCTTCTTTTTCC+TGG | + | Chr7:83505209-83505228 | None:intergenic | 30.0% |
| ! | TTCTTCTTTTTCCTGGATTT+CGG | + | Chr7:83505202-83505221 | None:intergenic | 30.0% |
| !! | CATATGTGGTATTGATTTGT+TGG | - | Chr7:83504824-83504843 | MsG0780040858.01.T01:CDS | 30.0% |
| !! | TTTTTCAAACACACCATGTT+GGG | + | Chr7:83504568-83504587 | None:intergenic | 30.0% |
| !!! | ACACCGTTCTTTTTGTTATT+CGG | - | Chr7:83504926-83504945 | MsG0780040858.01.T01:CDS | 30.0% |
| !!! | TTTTTTCAAACACACCATGT+TGG | + | Chr7:83504569-83504588 | None:intergenic | 30.0% |
| AAAGGTAGCCGTGATAAAAA+CGG | - | Chr7:83505082-83505101 | MsG0780040858.01.T01:intron | 35.0% | |
| AATCTGAACATTTGTCTGAG+GGG | - | Chr7:83504479-83504498 | MsG0780040858.01.T01:three_prime_UTR | 35.0% | |
| AGCTGTTGAAAAAAATGCAC+AGG | + | Chr7:83505007-83505026 | None:intergenic | 35.0% | |
| ATAAAAACGGTGAACCACAT+AGG | - | Chr7:83505095-83505114 | MsG0780040858.01.T01:intron | 35.0% | |
| ATAGGAAATTGACGGTGAAA+TGG | - | Chr7:83505113-83505132 | MsG0780040858.01.T01:intron | 35.0% | |
| ATCAAGAGAGTCAAATTCAG+AGG | + | Chr7:83505365-83505384 | None:intergenic | 35.0% | |
| CAATAGGAATGCTTAACAGA+TGG | + | Chr7:83504864-83504883 | None:intergenic | 35.0% | |
| GAAAGAATCAAAACCCAACA+TGG | - | Chr7:83504552-83504571 | MsG0780040858.01.T01:three_prime_UTR | 35.0% | |
| GAAATCTGAACATTTGTCTG+AGG | - | Chr7:83504477-83504496 | MsG0780040858.01.T01:three_prime_UTR | 35.0% | |
| TAGGAAATTGACGGTGAAAT+GGG | - | Chr7:83505114-83505133 | MsG0780040858.01.T01:intron | 35.0% | |
| TGAACCACATAGGAAATTGA+CGG | - | Chr7:83505105-83505124 | MsG0780040858.01.T01:intron | 35.0% | |
| TGGGATTCTCAAGTTATTGA+AGG | - | Chr7:83505337-83505356 | MsG0780040858.01.T01:CDS | 35.0% | |
| ! | GAAATTTTTGTACCCTTCAG+AGG | - | Chr7:83505574-83505593 | MsG0780040858.01.T01:CDS | 35.0% |
| ATCTGAACATTTGTCTGAGG+GGG | - | Chr7:83504480-83504499 | MsG0780040858.01.T01:three_prime_UTR | 40.0% | |
| GTGAAAAGCTTGGGATTGTA+TGG | - | Chr7:83505548-83505567 | MsG0780040858.01.T01:CDS | 40.0% | |
| TAGCCAAGGAAAACTCAAGT+GGG | - | Chr7:83504518-83504537 | MsG0780040858.01.T01:three_prime_UTR | 40.0% | |
| TGTAGCCAAGATTCAAACTG+CGG | - | Chr7:83505388-83505407 | MsG0780040858.01.T01:CDS | 40.0% | |
| TTCACCGTCAATTTCCTATG+TGG | + | Chr7:83505112-83505131 | None:intergenic | 40.0% | |
| TTTATCACGGCTACCTTTCA+AGG | + | Chr7:83505080-83505099 | None:intergenic | 40.0% | |
| ! | AGAAGTGCATTACTCAGTTG+CGG | - | Chr7:83505438-83505457 | MsG0780040858.01.T01:CDS | 40.0% |
| ! | TTTTACATCACAGGCTCCTT+CGG | - | Chr7:83505042-83505061 | MsG0780040858.01.T01:CDS | 40.0% |
| !! | GTGGTTCACCGTTTTTATCA+CGG | + | Chr7:83505093-83505112 | None:intergenic | 40.0% |
| ACAAGAAACAGCCGAAATCC+AGG | - | Chr7:83505188-83505207 | MsG0780040858.01.T01:intron | 45.0% | |
| AGCCAAGGAAAACTCAAGTG+GGG | - | Chr7:83504519-83504538 | MsG0780040858.01.T01:three_prime_UTR | 45.0% | |
| AGCTGGCGTTATTCCATATG+TGG | - | Chr7:83504810-83504829 | MsG0780040858.01.T01:CDS | 45.0% | |
| AGCTTCAAACTGCCTCTGAA+GGG | + | Chr7:83505589-83505608 | None:intergenic | 45.0% | |
| GAGCTCAAATCTGCCTTGAA+AGG | - | Chr7:83505064-83505083 | MsG0780040858.01.T01:intron | 45.0% | |
| GTAGCCAAGGAAAACTCAAG+TGG | - | Chr7:83504517-83504536 | MsG0780040858.01.T01:three_prime_UTR | 45.0% | |
| TGATCTGTGCAGTAAGTCGT+GGG | - | Chr7:83505318-83505337 | MsG0780040858.01.T01:CDS | 45.0% | |
| TGATGAGCAGAATGCTCATG+AGG | + | Chr7:83504673-83504692 | None:intergenic | 45.0% | |
| TGCGACACTAGTGTAGGTAT+AGG | + | Chr7:83505157-83505176 | None:intergenic | 45.0% | |
| TGCTTCCGCAGTTTGAATCT+TGG | + | Chr7:83505396-83505415 | None:intergenic | 45.0% | |
| ! | AACCCCACTTGAGTTTTCCT+TGG | + | Chr7:83504524-83504543 | None:intergenic | 45.0% |
| AACAAGGGGAATTCAACCCG+AGG | - | Chr7:83505247-83505266 | MsG0780040858.01.T01:intron | 50.0% | |
| AAGAAGCAGTCTCGCAACGT+TGG | - | Chr7:83505286-83505305 | MsG0780040858.01.T01:intron | 50.0% | |
| AAGGCAGATTTGAGCTCCGA+AGG | + | Chr7:83505061-83505080 | None:intergenic | 50.0% | |
| ACAAGGGGAATTCAACCCGA+GGG | - | Chr7:83505248-83505267 | MsG0780040858.01.T01:intron | 50.0% | |
| ACAGTGTGCGACACTAGTGT+AGG | + | Chr7:83505163-83505182 | None:intergenic | 50.0% | |
| CAGCTTCAAACTGCCTCTGA+AGG | + | Chr7:83505590-83505609 | None:intergenic | 50.0% | |
| CGTCGCATGAGGAATTGGAA+AGG | + | Chr7:83504599-83504618 | None:intergenic | 50.0% | |
| CTGATCTGTGCAGTAAGTCG+TGG | - | Chr7:83505317-83505336 | MsG0780040858.01.T01:CDS | 50.0% | |
| TATCTTTGCCATTGCCCCCT+CGG | + | Chr7:83505267-83505286 | None:intergenic | 50.0% | |
| TGCGATGTGCAATGTAGCCA+AGG | - | Chr7:83504504-83504523 | MsG0780040858.01.T01:three_prime_UTR | 50.0% | |
| AAGCAGTCTCGCAACGTTGG+TGG | - | Chr7:83505289-83505308 | MsG0780040858.01.T01:intron | 55.0% | |
| AAGGGGAATTCAACCCGAGG+GGG | - | Chr7:83505250-83505269 | MsG0780040858.01.T01:intron | 55.0% | |
| AATTCAACCCGAGGGGGCAA+TGG | - | Chr7:83505256-83505275 | MsG0780040858.01.T01:intron | 55.0% | |
| AGCAGTCTCGCAACGTTGGT+GGG | - | Chr7:83505290-83505309 | MsG0780040858.01.T01:intron | 55.0% | |
| ATCTTTGCCATTGCCCCCTC+GGG | + | Chr7:83505266-83505285 | None:intergenic | 55.0% | |
| CAAGGGGAATTCAACCCGAG+GGG | - | Chr7:83505249-83505268 | MsG0780040858.01.T01:intron | 55.0% | |
| CTTGAAGGCAACGTCGCATG+AGG | + | Chr7:83504610-83504629 | None:intergenic | 55.0% | |
| GGCAACGTCGCATGAGGAAT+TGG | + | Chr7:83504604-83504623 | None:intergenic | 55.0% | |
| TCCTCGTCAGACGAGCTTGA+AGG | + | Chr7:83504625-83504644 | None:intergenic | 55.0% | |
| GCCTTCAAGCTCGTCTGACG+AGG | - | Chr7:83504621-83504640 | MsG0780040858.01.T01:three_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 83504382 | 83505749 | 83504382 | ID=MsG0780040858.01;Name=MsG0780040858.01 |
| Chr7 | mRNA | 83504382 | 83505749 | 83504382 | ID=MsG0780040858.01.T01;Parent=MsG0780040858.01;Name=MsG0780040858.01.T01;_AED=0.34;_eAED=0.40;_QI=0|0|0.5|1|1|1|2|278|288 |
| Chr7 | exon | 83504382 | 83505076 | 83504382 | ID=MsG0780040858.01.T01:exon:19789;Parent=MsG0780040858.01.T01 |
| Chr7 | exon | 83505300 | 83505749 | 83505300 | ID=MsG0780040858.01.T01:exon:19788;Parent=MsG0780040858.01.T01 |
| Chr7 | CDS | 83505300 | 83505749 | 83505300 | ID=MsG0780040858.01.T01:cds;Parent=MsG0780040858.01.T01 |
| Chr7 | CDS | 83504660 | 83505076 | 83504660 | ID=MsG0780040858.01.T01:cds;Parent=MsG0780040858.01.T01 |
| Chr7 | three_prime_UTR | 83504382 | 83504659 | 83504382 | ID=MsG0780040858.01.T01:three_prime_utr;Parent=MsG0780040858.01.T01 |
| Gene Sequence |
| Protein sequence |
