AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880041886.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880041886.01.T01 MTR_8g006370 97.643 297 7 0 4 300 225 521 0.0 595
MsG0880041886.01.T01 MTR_8g102820 64.901 302 92 4 4 292 197 497 4.64e-136 395
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880041886.01.T01 AT2G44970 79.322 295 58 1 4 298 194 485 1.71e-170 481
MsG0880041886.01.T01 AT2G44970 79.661 295 57 1 4 298 209 500 2.69e-170 481
MsG0880041886.01.T01 AT2G44970 79.661 295 57 1 4 298 210 501 2.82e-170 481

Find 73 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATACAAAATGTTGAATT+AGG 0.263088 8:-722099 MsG0880041886.01.T01:three_prime_UTR
AGTATATTGAGGAAATTTAT+TGG 0.269657 8:-724132 MsG0880041886.01.T01:CDS
TTCATATGTCAAGTCTTCTA+AGG 0.301111 8:+722649 None:intergenic
AAGTGTTGTGCCTCTTAAAT+TGG 0.311980 8:-724399 MsG0880041886.01.T01:CDS
GTATATTGAGGAAATTTATT+GGG 0.317356 8:-724131 MsG0880041886.01.T01:CDS
GCAACTTTATCTTTCAAATC+AGG 0.329719 8:+724031 None:intergenic
CAGATGTTGTATTATGTATA+AGG 0.332471 8:-722043 MsG0880041886.01.T01:three_prime_UTR
TGCCGAGATGCGGAAGTTCC+TGG 0.350192 8:-722374 MsG0880041886.01.T01:CDS
TTAACTCTACTTGTGGAAAT+CGG 0.355420 8:-722242 MsG0880041886.01.T01:CDS
CTCCCTGTCGTGATGCCATT+AGG 0.408984 8:-722467 MsG0880041886.01.T01:CDS
GATTTGAAAGATAAAGTTGC+TGG 0.421584 8:-724028 MsG0880041886.01.T01:CDS
GAAAGATAAAGTTGCTGGGT+TGG 0.432215 8:-724023 MsG0880041886.01.T01:CDS
CAGCTGCTTTATCATTGTAC+TGG 0.434244 8:-724054 MsG0880041886.01.T01:CDS
GTTTCCTTTCGCACTGAAGC+TGG 0.437222 8:-722575 MsG0880041886.01.T01:CDS
AACGAAAATTAGACCATGCC+TGG 0.443286 8:-722331 MsG0880041886.01.T01:CDS
AAAAGACCTGCCAATTTAAG+AGG 0.446097 8:+724389 None:intergenic
ATAAATTGAATATAGAGATT+AGG 0.451634 8:+722136 None:intergenic
GAAACAACAGGGACTTCATC+TGG 0.458699 8:+722593 None:intergenic
TAACTCTACTTGTGGAAATC+GGG 0.466444 8:-722241 MsG0880041886.01.T01:CDS
TTGGTGATTATGTGAATATA+CGG 0.468831 8:-723937 MsG0880041886.01.T01:CDS
TTTGTACTCACAAAGTAAAG+TGG 0.471626 8:+724353 None:intergenic
GCAGCCATAGCAGCACCTAA+TGG 0.481820 8:+722452 None:intergenic
CGCAGAAGATCTGACGCTAT+AGG 0.487266 8:+723971 None:intergenic
CTACCCGTGGTTGCTTCAGC+TGG 0.493713 8:-722503 MsG0880041886.01.T01:CDS
TCTTATCTGTAAAATTATCA+AGG 0.495816 8:-723900 MsG0880041886.01.T01:intron
GGTCGCACCACAACAGATCC+AGG 0.501878 8:+722356 None:intergenic
TCAGTGCGAAAGGAAACAAC+AGG 0.503437 8:+722581 None:intergenic
GCACCTAATGGCATCACGAC+AGG 0.503618 8:+722464 None:intergenic
GTTGTGCCTCTTAAATTGGC+AGG 0.513844 8:-724395 MsG0880041886.01.T01:CDS
TACCTGTGATGCATCTCCTT+CGG 0.516376 8:+722277 None:intergenic
TATATTGAGGAAATTTATTG+GGG 0.529990 8:-724130 MsG0880041886.01.T01:CDS
AATTGAATATAGAGATTAGG+AGG 0.542507 8:+722139 None:intergenic
AGAGATAAAAGAGTATATTG+AGG 0.544562 8:-724143 MsG0880041886.01.T01:CDS
TGCTTGTGCACAGTTACTGC+AGG 0.548011 8:-722432 MsG0880041886.01.T01:CDS
CTTCTGCGAGAAGGACAGCT+TGG 0.549858 8:-723956 MsG0880041886.01.T01:CDS
TACCGAAGGAGATGCATCAC+AGG 0.551782 8:-722279 MsG0880041886.01.T01:CDS
ATCCAGGAACTTCCGCATCT+CGG 0.552827 8:+722372 None:intergenic
GTATTAGCACAAAGTCCCTA+TGG 0.558259 8:-724001 MsG0880041886.01.T01:CDS
TTGCTTCTTGGACATAGCAA+GGG 0.559921 8:-724091 MsG0880041886.01.T01:CDS
ACTTGACATATGAAAGGCGG+AGG 0.560836 8:-722640 MsG0880041886.01.T01:CDS
TTTGCTTCTTGGACATAGCA+AGG 0.561285 8:-724092 MsG0880041886.01.T01:CDS
GATAATGTGGCTAAAACAGC+AGG 0.569919 8:+722545 None:intergenic
GATGCCATTAGGTGCTGCTA+TGG 0.570553 8:-722456 MsG0880041886.01.T01:CDS
CTTCTTGGACATAGCAAGGG+AGG 0.572905 8:-724088 MsG0880041886.01.T01:CDS
AAAATTAGACCATGCCTGGA+TGG 0.575393 8:-722327 MsG0880041886.01.T01:CDS
GGCTCTCTTAACTCTACTTG+TGG 0.576202 8:-722249 MsG0880041886.01.T01:CDS
AGGTATGGTGAGAAGAGTGA+TGG 0.582667 8:-722407 MsG0880041886.01.T01:CDS
TAGCGACGAATAAACCATCC+AGG 0.584980 8:+722313 None:intergenic
CAGTTACTGCAGGTGAGGTA+TGG 0.585636 8:-722422 MsG0880041886.01.T01:CDS
CGCTATAGGAGTACCACCAT+AGG 0.585721 8:+723985 None:intergenic
ACGAATAAACCATCCAGGCA+TGG 0.588130 8:+722318 None:intergenic
TTCACCAGCTGAAGCAACCA+CGG 0.600998 8:+722499 None:intergenic
GCGTCAGATCTTCTGCGAGA+AGG 0.602016 8:-723965 MsG0880041886.01.T01:CDS
ATTTGAAAGATAAAGTTGCT+GGG 0.608331 8:-724027 MsG0880041886.01.T01:CDS
ATGAGCAACATGAGATAATG+TGG 0.608678 8:+722532 None:intergenic
AATGCCAGCTTCAGTGCGAA+AGG 0.609515 8:+722571 None:intergenic
TAGAAGACTTGACATATGAA+AGG 0.610338 8:-722646 MsG0880041886.01.T01:CDS
GTGCACAGTTACTGCAGGTG+AGG 0.614374 8:-722427 MsG0880041886.01.T01:CDS
CTAAATGATGATCTTACCGA+AGG 0.614567 8:-722293 MsG0880041886.01.T01:CDS
CACCTAATGGCATCACGACA+GGG 0.620045 8:+722465 None:intergenic
ACTTGTGGCTTGCCGAGATG+CGG 0.637261 8:-722384 MsG0880041886.01.T01:CDS
TCACCAGCTGAAGCAACCAC+GGG 0.641256 8:+722500 None:intergenic
GCTATAGGAGTACCACCATA+GGG 0.643739 8:+723986 None:intergenic
TGCTCATGCTGAACTACCCG+TGG 0.647962 8:-722516 MsG0880041886.01.T01:CDS
GGAAGTTCCTGGATCTGTTG+TGG 0.649408 8:-722363 MsG0880041886.01.T01:CDS
AGATGCATCACAGGTATGTG+AGG 0.649579 8:-722270 MsG0880041886.01.T01:CDS
TATTGCGAAGATTCATAGTG+AGG 0.654787 8:-724297 MsG0880041886.01.T01:intron
TGAGAAGAGTGATGGACTTG+TGG 0.675129 8:-722399 MsG0880041886.01.T01:CDS
AAGACTTGACATATGAAAGG+CGG 0.686008 8:-722643 MsG0880041886.01.T01:CDS
CTTGACATATGAAAGGCGGA+GGG 0.686650 8:-722639 MsG0880041886.01.T01:CDS
TCACAAAGTAAAGTGGACCA+TGG 0.688852 8:+724360 None:intergenic
CAGTGCGAAAGGAAACAACA+GGG 0.712624 8:+722582 None:intergenic
TTAGCACAAAGTCCCTATGG+TGG 0.731887 8:-723998 MsG0880041886.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTCTTTTATTAAACAT+AGG - Chr8:723135-723154 MsG0880041886.01.T01:intron 10.0%
!! AAAAAGAAAGAAAAAGATAA+CGG - Chr8:722949-722968 MsG0880041886.01.T01:intron 15.0%
!! ATAAATTGAATATAGAGATT+AGG + Chr8:724285-724304 None:intergenic 15.0%
!!! ATTTGGAGTAATAATTAATT+AGG - Chr8:722230-722249 MsG0880041886.01.T01:CDS 15.0%
!!! TATTATAATACTAGTTCTTA+CGG - Chr8:722146-722165 MsG0880041886.01.T01:three_prime_UTR 15.0%
!!! TTAATTTTTGTAGATTGTAT+TGG - Chr8:722180-722199 MsG0880041886.01.T01:three_prime_UTR 15.0%
!! AAAACAATTGATATTCAAGT+AGG + Chr8:722763-722782 None:intergenic 20.0%
!! AGATATAGAATAATAGGTAA+AGG + Chr8:723413-723432 None:intergenic 20.0%
!! AGTATATTGAGGAAATTTAT+TGG - Chr8:722286-722305 MsG0880041886.01.T01:CDS 20.0%
!! ATTAATGTTATGAAGGATAA+TGG - Chr8:722905-722924 MsG0880041886.01.T01:intron 20.0%
!! GTATATTGAGGAAATTTATT+GGG - Chr8:722287-722306 MsG0880041886.01.T01:CDS 20.0%
!! TATATTGAGGAAATTTATTG+GGG - Chr8:722288-722307 MsG0880041886.01.T01:CDS 20.0%
!! TCAGTAAATTAATGTTATGA+AGG - Chr8:722898-722917 MsG0880041886.01.T01:intron 20.0%
!! TCTTATCTGTAAAATTATCA+AGG - Chr8:722518-722537 MsG0880041886.01.T01:CDS 20.0%
!! TTACATTCTATTACTGAATT+TGG - Chr8:722213-722232 MsG0880041886.01.T01:CDS 20.0%
!! TTTACCAGATATAGAATAAT+AGG + Chr8:723419-723438 None:intergenic 20.0%
!! TTTACCTATTATTCTATATC+TGG - Chr8:723412-723431 MsG0880041886.01.T01:intron 20.0%
!!! AAAGTCTGTTTTTCAAAATT+AGG - Chr8:722086-722105 MsG0880041886.01.T01:three_prime_UTR 20.0%
!!! TTACCATTGATTTATTACAA+GGG - Chr8:723735-723754 MsG0880041886.01.T01:intron 20.0%
!!! TTTACCATTGATTTATTACA+AGG - Chr8:723734-723753 MsG0880041886.01.T01:intron 20.0%
!!! TTTTGATCTATAGTTTTTGT+TGG - Chr8:723377-723396 MsG0880041886.01.T01:intron 20.0%
! AACCATCAATTAATGCAATA+AGG - Chr8:723298-723317 MsG0880041886.01.T01:intron 25.0%
! AATCAATGGTAAATTGTAGA+TGG + Chr8:723727-723746 None:intergenic 25.0%
! AATCATTAGATAGAAAGAGA+GGG + Chr8:723519-723538 None:intergenic 25.0%
! AATTGAATATAGAGATTAGG+AGG + Chr8:724282-724301 None:intergenic 25.0%
! AGGTTATGATGTTTATTTCA+TGG - Chr8:723060-723079 MsG0880041886.01.T01:intron 25.0%
! ATAAGGTCCTATGATATATT+TGG - Chr8:723315-723334 MsG0880041886.01.T01:intron 25.0%
! ATACGACTTGAAACAAATTT+GGG - Chr8:722873-722892 MsG0880041886.01.T01:intron 25.0%
! ATTCTTACACAAAAACAGTA+AGG - Chr8:722974-722993 MsG0880041886.01.T01:intron 25.0%
! ATTTGAAAGATAAAGTTGCT+GGG - Chr8:722391-722410 MsG0880041886.01.T01:CDS 25.0%
! CACCAAATTACCAATATATT+TGG + Chr8:723195-723214 None:intergenic 25.0%
! CAGATGTTGTATTATGTATA+AGG - Chr8:724375-724394 MsG0880041886.01.T01:CDS 25.0%
! CCAATACAAAATGTTGAATT+AGG - Chr8:724319-724338 MsG0880041886.01.T01:CDS 25.0%
! TATACGACTTGAAACAAATT+TGG - Chr8:722872-722891 MsG0880041886.01.T01:intron 25.0%
! TATAGAATAATAGGTAAAGG+TGG + Chr8:723410-723429 None:intergenic 25.0%
! TATGCAATTAGTCATGAAAT+GGG - Chr8:723094-723113 MsG0880041886.01.T01:intron 25.0%
! TTATGCAATTAGTCATGAAA+TGG - Chr8:723093-723112 MsG0880041886.01.T01:intron 25.0%
! TTCTTACACAAAAACAGTAA+GGG - Chr8:722975-722994 MsG0880041886.01.T01:intron 25.0%
!! AAAAACAGTAAGGGTATATT+AGG - Chr8:722984-723003 MsG0880041886.01.T01:intron 25.0%
!! AATATACTCTTTTATCTCTC+TGG + Chr8:722274-722293 None:intergenic 25.0%
!! AGAGATAAAAGAGTATATTG+AGG - Chr8:722275-722294 MsG0880041886.01.T01:CDS 25.0%
!! CACCAAATATATTGGTAATT+TGG - Chr8:723190-723209 MsG0880041886.01.T01:intron 25.0%
!! CATTAATTGATGGTTACATA+TGG + Chr8:723293-723312 None:intergenic 25.0%
!! CCTAATTCAACATTTTGTAT+TGG + Chr8:724322-724341 None:intergenic 25.0%
!! GTTCTAGATAAGAAAAAGAT+GGG + Chr8:722612-722631 None:intergenic 25.0%
!! TTGGTGATTATGTGAATATA+CGG - Chr8:722481-722500 MsG0880041886.01.T01:CDS 25.0%
!!! AGTTCTAGATAAGAAAAAGA+TGG + Chr8:722613-722632 None:intergenic 25.0%
!!! CTGTTTTTCAAAATTAGGTT+TGG - Chr8:722091-722110 MsG0880041886.01.T01:three_prime_UTR 25.0%
!!! TATGTGACTTTTTTTAGTCA+CGG - Chr8:723657-723676 MsG0880041886.01.T01:intron 25.0%
AACAATTCAATCTCATTCCA+TGG - Chr8:723009-723028 MsG0880041886.01.T01:intron 30.0%
AACATCATAACCTTGTAAAG+AGG + Chr8:723053-723072 None:intergenic 30.0%
AGATAAGAAAAAGATGGGAA+AGG + Chr8:722607-722626 None:intergenic 30.0%
AGTCTCTTCATAGATGATTT+AGG + Chr8:723469-723488 None:intergenic 30.0%
ATCATTTCTACCTCTTTACA+AGG - Chr8:723040-723059 MsG0880041886.01.T01:intron 30.0%
ATTCCATGCACCAAATATAT+TGG - Chr8:723182-723201 MsG0880041886.01.T01:intron 30.0%
CAATCATTAGATAGAAAGAG+AGG + Chr8:723520-723539 None:intergenic 30.0%
CTTTGCACCAAATATATCAT+AGG + Chr8:723325-723344 None:intergenic 30.0%
GACCTTATTGCATTAATTGA+TGG + Chr8:723303-723322 None:intergenic 30.0%
GATTTGAAAGATAAAGTTGC+TGG - Chr8:722390-722409 MsG0880041886.01.T01:CDS 30.0%
GCAACTTTATCTTTCAAATC+AGG + Chr8:722390-722409 None:intergenic 30.0%
TAGAAGACTTGACATATGAA+AGG - Chr8:723772-723791 MsG0880041886.01.T01:intron 30.0%
TCTCCCTTGTAATAAATCAA+TGG + Chr8:723741-723760 None:intergenic 30.0%
TTAACTCTACTTGTGGAAAT+CGG - Chr8:724176-724195 MsG0880041886.01.T01:intron 30.0%
TTCATATGTCAAGTCTTCTA+AGG + Chr8:723772-723791 None:intergenic 30.0%
TTTGTACTCACAAAGTAAAG+TGG + Chr8:722068-722087 None:intergenic 30.0%
! AATACTAGTTCTTACGGAAA+AGG - Chr8:722152-722171 MsG0880041886.01.T01:three_prime_UTR 30.0%
! ATTTGCTCTAAATCTTTCTC+AGG - Chr8:723352-723371 MsG0880041886.01.T01:intron 30.0%
! CAACTTAGTATTTTCTCACT+AGG - Chr8:723258-723277 MsG0880041886.01.T01:intron 30.0%
! CTTGTGAATACAAAAGCATA+AGG - Chr8:722642-722661 MsG0880041886.01.T01:CDS 30.0%
! TCTACCATCTTTTATACTGT+GGG - Chr8:723488-723507 MsG0880041886.01.T01:intron 30.0%
! TGAGAAAGATTTAGAGCAAA+TGG + Chr8:723353-723372 None:intergenic 30.0%
! TTAAGCTTGTTCTCTTCTAT+AGG - Chr8:723603-723622 MsG0880041886.01.T01:intron 30.0%
! TTAGTATTTTCTCACTAGGT+CGG - Chr8:723262-723281 MsG0880041886.01.T01:intron 30.0%
! TTTGCTCTAAATCTTTCTCA+GGG - Chr8:723353-723372 MsG0880041886.01.T01:intron 30.0%
! TTTTGTATTCACAAGCAAGA+AGG + Chr8:722637-722656 None:intergenic 30.0%
!! AATATATTTGGTGCATGGAA+TGG + Chr8:723183-723202 None:intergenic 30.0%
!! TTACCAATATATTTGGTGCA+TGG + Chr8:723188-723207 None:intergenic 30.0%
AAAAGACCTGCCAATTTAAG+AGG + Chr8:722032-722051 None:intergenic 35.0%
AAGACTTGACATATGAAAGG+CGG - Chr8:723775-723794 MsG0880041886.01.T01:intron 35.0%
ATGAGCAACATGAGATAATG+TGG + Chr8:723889-723908 None:intergenic 35.0%
CATTTATTTCGCTCTTAGCT+AGG - Chr8:723223-723242 MsG0880041886.01.T01:intron 35.0%
CTAAATGATGATCTTACCGA+AGG - Chr8:724125-724144 MsG0880041886.01.T01:CDS 35.0%
CTATCTGGATGTTTCCATAT+CGG - Chr8:722827-722846 MsG0880041886.01.T01:intron 35.0%
GAAGCCTCATTCTACATAAT+CGG - Chr8:723157-723176 MsG0880041886.01.T01:intron 35.0%
GATATGGAAACATCCAGATA+GGG + Chr8:722828-722847 None:intergenic 35.0%
TAACTCTACTTGTGGAAATC+GGG - Chr8:724177-724196 MsG0880041886.01.T01:intron 35.0%
TATTGCGAAGATTCATAGTG+AGG - Chr8:722121-722140 MsG0880041886.01.T01:three_prime_UTR 35.0%
! AACAGAGATGACAGATTTTC+AGG + Chr8:722692-722711 None:intergenic 35.0%
! AAGAAACGTGTTTTGCTTCT+TGG - Chr8:722315-722334 MsG0880041886.01.T01:CDS 35.0%
! AAGTGTTGTGCCTCTTAAAT+TGG - Chr8:722019-722038 MsG0880041886.01.T01:three_prime_UTR 35.0%
! CAGAATAATTTTGCCCTATC+TGG - Chr8:722812-722831 MsG0880041886.01.T01:intron 35.0%
! CATTTCAAGTGTAAACCAGA+AGG + Chr8:722577-722596 None:intergenic 35.0%
! CTCTACCATCTTTTATACTG+TGG - Chr8:723487-723506 MsG0880041886.01.T01:intron 35.0%
! GCATGGTCTAATTTTCGTTT+AGG + Chr8:724086-724105 None:intergenic 35.0%
! TTGCTCTAAATCTTTCTCAG+GGG - Chr8:723354-723373 MsG0880041886.01.T01:intron 35.0%
AAAATTAGACCATGCCTGGA+TGG - Chr8:724091-724110 MsG0880041886.01.T01:CDS 40.0%
AACGAAAATTAGACCATGCC+TGG - Chr8:724087-724106 MsG0880041886.01.T01:CDS 40.0%
AATCACCTATTCACTCCTTC+TGG - Chr8:722559-722578 MsG0880041886.01.T01:CDS 40.0%
AGCTCCCACAGTATAAAAGA+TGG + Chr8:723495-723514 None:intergenic 40.0%
ATGGCCGATTATGTAGAATG+AGG + Chr8:723164-723183 None:intergenic 40.0%
CAGTTTGTAGCATACCGATA+TGG + Chr8:722844-722863 None:intergenic 40.0%
CGATATGGAAACATCCAGAT+AGG + Chr8:722829-722848 None:intergenic 40.0%
GAAAGATAAAGTTGCTGGGT+TGG - Chr8:722395-722414 MsG0880041886.01.T01:CDS 40.0%
GAGTTCACACAAGACAGAAT+AGG + Chr8:723553-723572 None:intergenic 40.0%
GATAATGTGGCTAAAACAGC+AGG + Chr8:723876-723895 None:intergenic 40.0%
GTAAACCAGAAGGAGTGAAT+AGG + Chr8:722567-722586 None:intergenic 40.0%
GTATTAGCACAAAGTCCCTA+TGG - Chr8:722417-722436 MsG0880041886.01.T01:CDS 40.0%
TCACAAAGTAAAGTGGACCA+TGG + Chr8:722061-722080 None:intergenic 40.0%
TTGCTTCTTGGACATAGCAA+GGG - Chr8:722327-722346 MsG0880041886.01.T01:CDS 40.0%
TTTGCTTCTTGGACATAGCA+AGG - Chr8:722326-722345 MsG0880041886.01.T01:CDS 40.0%
! CAGCTGCTTTATCATTGTAC+TGG - Chr8:722364-722383 MsG0880041886.01.T01:CDS 40.0%
ACGAATAAACCATCCAGGCA+TGG + Chr8:724103-724122 None:intergenic 45.0%
ACTTGACATATGAAAGGCGG+AGG - Chr8:723778-723797 MsG0880041886.01.T01:intron 45.0%
AGAAATGATTCCATGCGCCA+TGG + Chr8:723029-723048 None:intergenic 45.0%
AGATGCATCACAGGTATGTG+AGG - Chr8:724148-724167 MsG0880041886.01.T01:CDS 45.0%
AGGTATGGTGAGAAGAGTGA+TGG - Chr8:724011-724030 MsG0880041886.01.T01:CDS 45.0%
CAGTGCGAAAGGAAACAACA+GGG + Chr8:723839-723858 None:intergenic 45.0%
CTTGACATATGAAAGGCGGA+GGG - Chr8:723779-723798 MsG0880041886.01.T01:intron 45.0%
GAAACAACAGGGACTTCATC+TGG + Chr8:723828-723847 None:intergenic 45.0%
GGCTCTCTTAACTCTACTTG+TGG - Chr8:724169-724188 MsG0880041886.01.T01:CDS 45.0%
GTTGTGCCTCTTAAATTGGC+AGG - Chr8:722023-722042 MsG0880041886.01.T01:three_prime_UTR 45.0%
TACCTGTGATGCATCTCCTT+CGG + Chr8:724144-724163 None:intergenic 45.0%
TAGCGACGAATAAACCATCC+AGG + Chr8:724108-724127 None:intergenic 45.0%
TCAGTGCGAAAGGAAACAAC+AGG + Chr8:723840-723859 None:intergenic 45.0%
TGGAAATCGGGCAGAAAAAG+AGG - Chr8:724189-724208 MsG0880041886.01.T01:intron 45.0%
TTAGCACAAAGTCCCTATGG+TGG - Chr8:722420-722439 MsG0880041886.01.T01:CDS 45.0%
!! GCTATAGGAGTACCACCATA+GGG + Chr8:722435-722454 None:intergenic 45.0%
!! TGAGAAGAGTGATGGACTTG+TGG - Chr8:724019-724038 MsG0880041886.01.T01:CDS 45.0%
AATGCCAGCTTCAGTGCGAA+AGG + Chr8:723850-723869 None:intergenic 50.0%
ATCCAGGAACTTCCGCATCT+CGG + Chr8:724049-724068 None:intergenic 50.0%
CAATCTCATTCCATGGCGCA+TGG - Chr8:723016-723035 MsG0880041886.01.T01:intron 50.0%
CACCTAATGGCATCACGACA+GGG + Chr8:723956-723975 None:intergenic 50.0%
CAGTTACTGCAGGTGAGGTA+TGG - Chr8:723996-724015 MsG0880041886.01.T01:CDS 50.0%
CGCAGAAGATCTGACGCTAT+AGG + Chr8:722450-722469 None:intergenic 50.0%
CTTCTTGGACATAGCAAGGG+AGG - Chr8:722330-722349 MsG0880041886.01.T01:CDS 50.0%
GGAAGTTCCTGGATCTGTTG+TGG - Chr8:724055-724074 MsG0880041886.01.T01:CDS 50.0%
GTTTCCTTTCGCACTGAAGC+TGG - Chr8:723843-723862 MsG0880041886.01.T01:intron 50.0%
TACCGAAGGAGATGCATCAC+AGG - Chr8:724139-724158 MsG0880041886.01.T01:CDS 50.0%
TGCTTGTGCACAGTTACTGC+AGG - Chr8:723986-724005 MsG0880041886.01.T01:CDS 50.0%
TTCACCAGCTGAAGCAACCA+CGG + Chr8:723922-723941 None:intergenic 50.0%
! GCAGGTCTTTTCAGCAACCA+TGG - Chr8:722041-722060 MsG0880041886.01.T01:three_prime_UTR 50.0%
!! CGCTATAGGAGTACCACCAT+AGG + Chr8:722436-722455 None:intergenic 50.0%
!! GATGCCATTAGGTGCTGCTA+TGG - Chr8:723962-723981 MsG0880041886.01.T01:CDS 50.0%
CTCCCTGTCGTGATGCCATT+AGG - Chr8:723951-723970 MsG0880041886.01.T01:CDS 55.0%
CTTCTGCGAGAAGGACAGCT+TGG - Chr8:722462-722481 MsG0880041886.01.T01:CDS 55.0%
GCACCTAATGGCATCACGAC+AGG + Chr8:723957-723976 None:intergenic 55.0%
GCAGCCATAGCAGCACCTAA+TGG + Chr8:723969-723988 None:intergenic 55.0%
GCGTCAGATCTTCTGCGAGA+AGG - Chr8:722453-722472 MsG0880041886.01.T01:CDS 55.0%
GTGCACAGTTACTGCAGGTG+AGG - Chr8:723991-724010 MsG0880041886.01.T01:CDS 55.0%
TCACCAGCTGAAGCAACCAC+GGG + Chr8:723921-723940 None:intergenic 55.0%
TGCTCATGCTGAACTACCCG+TGG - Chr8:723902-723921 MsG0880041886.01.T01:CDS 55.0%
! ACTTGTGGCTTGCCGAGATG+CGG - Chr8:724034-724053 MsG0880041886.01.T01:CDS 55.0%
CTACCCGTGGTTGCTTCAGC+TGG - Chr8:723915-723934 MsG0880041886.01.T01:CDS 60.0%
GGTCGCACCACAACAGATCC+AGG + Chr8:724065-724084 None:intergenic 60.0%
TGCCGAGATGCGGAAGTTCC+TGG - Chr8:724044-724063 MsG0880041886.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 722011 724429 722011 ID=MsG0880041886.01;Name=MsG0880041886.01
Chr8 mRNA 722011 724429 722011 ID=MsG0880041886.01.T01;Parent=MsG0880041886.01;Name=MsG0880041886.01.T01;_AED=0.49;_eAED=0.50;_QI=0|1|0.66|1|1|1|3|191|300
Chr8 exon 724298 724429 724298 ID=MsG0880041886.01.T01:exon:129;Parent=MsG0880041886.01.T01
Chr8 exon 723901 724188 723901 ID=MsG0880041886.01.T01:exon:130;Parent=MsG0880041886.01.T01
Chr8 exon 722011 722684 722011 ID=MsG0880041886.01.T01:exon:131;Parent=MsG0880041886.01.T01
Chr8 CDS 724298 724429 724298 ID=MsG0880041886.01.T01:cds;Parent=MsG0880041886.01.T01
Chr8 CDS 723901 724188 723901 ID=MsG0880041886.01.T01:cds;Parent=MsG0880041886.01.T01
Chr8 CDS 722202 722684 722202 ID=MsG0880041886.01.T01:cds;Parent=MsG0880041886.01.T01
Chr8 three_prime_UTR 722011 722201 722011 ID=MsG0880041886.01.T01:three_prime_utr;Parent=MsG0880041886.01.T01
Gene Sequence

>MsG0880041886.01.T01

ATGCTATTAAGTGTTGTGCCTCTTAAATTGGCAGGTCTTTTCAGCAACCATGGTCCACTTTACTTTGTGAGTACAAAAGTCTGTTTTTCAAAATTAGGTTTGGCGTGTCATATTGCGAAGATTCATAGTGAGGCTTCAGTTGAGAAAATTGCCAGAGAGATAAAAGAGTATATTGAGGAAATTTATTGGGGTTCAAAGAAACGTGTTTTGCTTCTTGGACATAGCAAGGGAGGAGTAGATGCAGCAGCTGCTTTATCATTGTACTGGCCTGATTTGAAAGATAAAGTTGCTGGGTTGGTATTAGCACAAAGTCCCTATGGTGGTACTCCTATAGCGTCAGATCTTCTGCGAGAAGGACAGCTTGGTGATTATGTGAATATACGGAAACTCACTGAGATTCTTATCTGTAAAATTATCAAGGGAGACATGAGAGCCTTAGAAGACTTGACATATGAAAGGCGGAGGGAATTTTTACAGAAGCATCATTTGCCAGATGAAGTCCCTGTTGTTTCCTTTCGCACTGAAGCTGGCATTTCGCCTGCTGTTTTAGCCACATTATCTCATGTTGCTCATGCTGAACTACCCGTGGTTGCTTCAGCTGGTGAAAGTACAAAACTCCCTGTCGTGATGCCATTAGGTGCTGCTATGGCTGCTTGTGCACAGTTACTGCAGGTGAGGTATGGTGAGAAGAGTGATGGACTTGTGGCTTGCCGAGATGCGGAAGTTCCTGGATCTGTTGTGGTGCGACCTAAACGAAAATTAGACCATGCCTGGATGGTTTATTCGTCGCTAAATGATGATCTTACCGAAGGAGATGCATCACAGGTATGTGAGGCTCTCTTAACTCTACTTGTGGAAATCGGGCAGAAAAAGAGGCATGAACTTGCAATGAAAGATGAATGA
Protein sequence

>MsG0880041886.01.T01

MLLSVVPLKLAGLFSNHGPLYFVSTKVCFSKLGLACHIAKIHSEASVEKIAREIKEYIEEIYWGSKKRVLLLGHSKGGVDAAAALSLYWPDLKDKVAGLVLAQSPYGGTPIASDLLREGQLGDYVNIRKLTEILICKIIKGDMRALEDLTYERRREFLQKHHLPDEVPVVSFRTEAGISPAVLATLSHVAHAELPVVASAGESTKLPVVMPLGAAMAACAQLLQVRYGEKSDGLVACRDAEVPGSVVVRPKRKLDHAWMVYSSLNDDLTEGDASQVCEALLTLLVEIGQKKRHELAMKDE*