AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680035844.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035844.01.T01 MTR_6g090515 82.812 192 11 2 1 171 30 220 5.53e-106 302
MsG0680035844.01.T01 MTR_8g102030 72.917 192 28 4 1 171 34 222 3.13e-88 258
MsG0680035844.01.T01 MTR_8g102020 60.417 192 37 4 1 171 32 205 2.28e-67 204
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035844.01.T01 AT4G29160 76.536 179 19 3 15 171 15 192 7.80e-88 255
MsG0680035844.01.T01 AT4G29160 76.536 179 19 3 15 171 42 219 1.07e-87 256
MsG0680035844.01.T01 AT4G29160 76.536 179 19 3 15 171 42 219 1.07e-87 256
MsG0680035844.01.T01 AT2G19830 74.468 188 28 5 1 171 10 194 5.73e-87 253
MsG0680035844.01.T01 AT2G19830 74.468 188 28 5 1 171 29 213 1.03e-86 253

Find 53 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAGATTGGATTGAAAATT+TGG 0.096934 6:+113321918 None:intergenic
ACTAGAAATGCTTGAGAAAA+AGG 0.221659 6:-113318894 MsG0680035844.01.T01:exon
TCCTCAGGAGTCGGCTTTGC+AGG 0.229972 6:+113317568 None:intergenic
TTGAAGAAGATGAAGAAGTT+TGG 0.251617 6:+113321977 None:intergenic
GTTGAAAATTGAATTGGTTT+TGG 0.265651 6:+113321881 None:intergenic
AGATGAATTGGCAGCTTTGC+AGG 0.277136 6:-113317545 MsG0680035844.01.T01:CDS
TTGAATCTGCTTCATGTTCT+CGG 0.295683 6:+113318267 None:intergenic
CACCAAAAGAAAGAACAAAA+AGG 0.308755 6:-113318819 MsG0680035844.01.T01:CDS
TTGGATCTGGATTCGGTAGA+TGG 0.330778 6:+113321937 None:intergenic
CCCACAGTGCATGTCCCAGC+TGG 0.344057 6:-113317613 MsG0680035844.01.T01:CDS
CGTGCAGGTTGCCTCCCAGC+TGG 0.353565 6:+113317598 None:intergenic
TGAAGAAGATGAAGAAGTTT+GGG 0.372693 6:+113321978 None:intergenic
TTGGATTGAAAATTTGGATC+TGG 0.379578 6:+113321924 None:intergenic
CTAAGTGGCAATAGCATTGC+TGG 0.385643 6:+113321758 None:intergenic
GGAGTCGGCTTTGCAGGAAC+AGG 0.397015 6:+113317574 None:intergenic
GACTCCTGAGGAAGATGAAT+TGG 0.412289 6:-113317557 MsG0680035844.01.T01:CDS
TGGATTGTTGAAAATTGAAT+TGG 0.413791 6:+113321875 None:intergenic
TGAAAATTTGGATCTGGATT+CGG 0.417671 6:+113321930 None:intergenic
CCTCGTTTAATTTGTCTAAG+TGG 0.429444 6:+113321743 None:intergenic
GGAGCAGGAGCTGTAGTTGC+TGG 0.442696 6:+113317634 None:intergenic
AAATCAGCAGCTGCACCAAT+TGG 0.448641 6:+113318229 None:intergenic
TTCATCTTCTTCAACATCAT+CGG 0.452762 6:-113321968 MsG0680035844.01.T01:five_prime_UTR
TAATAGATGATAATGTTAGA+AGG 0.453601 6:-113318519 MsG0680035844.01.T01:intron
CCAGTTGCGTATTCATGACC+AGG 0.454482 6:-113318626 MsG0680035844.01.T01:intron
AAGATGAAGAAGTTTGGGTT+AGG 0.456128 6:+113321983 None:intergenic
CCAGCTGGGACATGCACTGT+GGG 0.462898 6:+113317613 None:intergenic
GCAGATTCAAGAAGCATTGT+CGG 0.464581 6:-113318254 MsG0680035844.01.T01:CDS
ACGGTAGATGCGTTAAGAAC+AGG 0.469044 6:-113318477 MsG0680035844.01.T01:CDS
TTCAATGTTTGAAGAGGAAG+AGG 0.475427 6:-113318684 MsG0680035844.01.T01:CDS
TCGTGAAAGGGATGAAAGAT+TGG 0.476647 6:+113321905 None:intergenic
TGCTAAAGCCACCACGGAAA+CGG 0.478535 6:-113318496 MsG0680035844.01.T01:CDS
CCTGGTCATGAATACGCAAC+TGG 0.481018 6:+113318626 None:intergenic
GGGACATGCACTGTGGGAGC+AGG 0.482842 6:+113317619 None:intergenic
GAAGCATTGTCGGCTCCAAT+TGG 0.484568 6:-113318244 MsG0680035844.01.T01:CDS
CGCATCTACCGTTTCCGTGG+TGG 0.487516 6:+113318488 None:intergenic
GGCAGCTTTGCAGGCTGAGA+TGG 0.492052 6:-113317536 MsG0680035844.01.T01:CDS
TTTGCAGGAACAGGGCGTGC+AGG 0.497715 6:+113317583 None:intergenic
CTGTTCATTTATCTCGTCCA+TGG 0.501356 6:+113318291 None:intergenic
CCACAGTGCATGTCCCAGCT+GGG 0.512082 6:-113317612 MsG0680035844.01.T01:CDS
GCTGCCAATTCATCTTCCTC+AGG 0.526016 6:+113317553 None:intergenic
AATTCATCTTCCTCAGGAGT+CGG 0.548839 6:+113317559 None:intergenic
GTGCAGGTTGCCTCCCAGCT+GGG 0.551247 6:+113317599 None:intergenic
CGGCAATTCAATGTTTGAAG+AGG 0.561917 6:-113318690 MsG0680035844.01.T01:CDS
CCCAGCTGGGACATGCACTG+TGG 0.570484 6:+113317612 None:intergenic
AACAGGAGCAGCTACTATGA+AGG 0.577122 6:-113318460 MsG0680035844.01.T01:CDS
TAACGCATCTACCGTTTCCG+TGG 0.584559 6:+113318485 None:intergenic
GAACAACAAGTTGAGCAGCT+TGG 0.596454 6:-113318655 MsG0680035844.01.T01:CDS
GAGTCGGCTTTGCAGGAACA+GGG 0.596697 6:+113317575 None:intergenic
TCCTGCAAAGCCGACTCCTG+AGG 0.597589 6:-113317569 MsG0680035844.01.T01:CDS
CAGTGCATGTCCCAGCTGGG+AGG 0.671305 6:-113317609 MsG0680035844.01.T01:CDS
CCACTTAGACAAATTAAACG+AGG 0.677140 6:-113321743 MsG0680035844.01.T01:intron
TGATGACGTTGACAAGACCA+TGG 0.678474 6:-113318308 MsG0680035844.01.T01:CDS
AGAAGGTGCTAAAGCCACCA+CGG 0.700426 6:-113318502 MsG0680035844.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAATAAATAAGAAAAAG+GGG + Chr6:113317875-113317894 None:intergenic 10.0%
!!! AAAACTTTAAAATATCAATA+TGG + Chr6:113318277-113318296 None:intergenic 10.0%
!! AAATGCTTATTTATTTATGT+TGG - Chr6:113321337-113321356 MsG0680035844.01.T01:intron 15.0%
!! AATTCAAGTAAAGATAATTA+GGG + Chr6:113318850-113318869 None:intergenic 15.0%
!! ATCAATTTATTAGAACATAT+TGG - Chr6:113320469-113320488 MsG0680035844.01.T01:intron 15.0%
!! ATGATTTATTTAATTGAGTT+TGG - Chr6:113321171-113321190 MsG0680035844.01.T01:intron 15.0%
!! ATTAAATTGTTTATCTAAAC+AGG + Chr6:113319569-113319588 None:intergenic 15.0%
!! TAAAATAAATAAGAAAAAGG+GGG + Chr6:113317874-113317893 None:intergenic 15.0%
!! TAATTCAAGTAAAGATAATT+AGG + Chr6:113318851-113318870 None:intergenic 15.0%
!! TTAAATTGTTTATCTAAACA+GGG + Chr6:113319568-113319587 None:intergenic 15.0%
!! TTAATAATAGGAATTAAAGT+TGG + Chr6:113320037-113320056 None:intergenic 15.0%
!!! AATAACAATTAATGATCTTT+TGG + Chr6:113319982-113320001 None:intergenic 15.0%
!!! ATTTTTTTCTTCTTAAAACT+CGG + Chr6:113319139-113319158 None:intergenic 15.0%
!!! TCATTTTCTTAAAATATGAT+TGG + Chr6:113321670-113321689 None:intergenic 15.0%
!! AAAATAAATAAGAAAAAGGG+GGG + Chr6:113317873-113317892 None:intergenic 20.0%
!! AGTTCATATAGGTTAATAAT+AGG + Chr6:113320049-113320068 None:intergenic 20.0%
!! ATTAAGCTATTTATCCAAAA+TGG + Chr6:113320139-113320158 None:intergenic 20.0%
!! GAATTAAGAAAAAAGTTCAA+GGG + Chr6:113320404-113320423 None:intergenic 20.0%
!! TAAATAGGCAAAACTTATTT+AGG + Chr6:113318417-113318436 None:intergenic 20.0%
!! TAGCTTATGAAAACAATTTA+AGG + Chr6:113320248-113320267 None:intergenic 20.0%
!! TATATATGAAGAAGCTTAAT+AGG + Chr6:113318245-113318264 None:intergenic 20.0%
!! TGAATTAAGAAAAAAGTTCA+AGG + Chr6:113320405-113320424 None:intergenic 20.0%
!! TTATTTAGTAGCTGATATAT+TGG - Chr6:113318333-113318352 MsG0680035844.01.T01:intron 20.0%
!! TTGGATAAATAGCTTAATTA+AGG - Chr6:113320141-113320160 MsG0680035844.01.T01:intron 20.0%
!!! AGATATAATTTTCGTTAATG+AGG - Chr6:113318759-113318778 MsG0680035844.01.T01:intron 20.0%
!!! CTTTTCACTTAATTTTGTTT+TGG - Chr6:113321561-113321580 MsG0680035844.01.T01:intron 20.0%
!!! GATAAAATAGGCTTTTAAAT+AGG - Chr6:113318470-113318489 MsG0680035844.01.T01:CDS 20.0%
!!! TAAATAAGTTTTGCCTATTT+AGG - Chr6:113318416-113318435 MsG0680035844.01.T01:intron 20.0%
!!! TAATAGATGATAATGTTAGA+AGG - Chr6:113321006-113321025 MsG0680035844.01.T01:intron 20.0%
!!! TCAAACAAAAATGTTTTGTT+TGG + Chr6:113317673-113317692 None:intergenic 20.0%
!!! TTTAGCTTATGCAAATAAAT+AGG + Chr6:113318806-113318825 None:intergenic 20.0%
!!! TTTAGTATTAGTTTAGACAA+TGG - Chr6:113320938-113320957 MsG0680035844.01.T01:intron 20.0%
!!! TTTTCATAAATTCTTTAAGC+CGG - Chr6:113319885-113319904 MsG0680035844.01.T01:intron 20.0%
! AAAAAACTATTAAACCCATC+AGG - Chr6:113318215-113318234 MsG0680035844.01.T01:intron 25.0%
! AAAAAATGAGCCAATCTAAA+CGG - Chr6:113318823-113318842 MsG0680035844.01.T01:CDS 25.0%
! AATAAATTCAGAATGCTACA+CGG + Chr6:113321798-113321817 None:intergenic 25.0%
! AATCCTAGATCATATAAGTA+GGG - Chr6:113318052-113318071 MsG0680035844.01.T01:intron 25.0%
! ACCAAAAGAAAGAACAAAAA+GGG - Chr6:113320707-113320726 MsG0680035844.01.T01:intron 25.0%
! ACCATTTATCCATAAATACT+TGG + Chr6:113319343-113319362 None:intergenic 25.0%
! AGTGTCTGTATAATTTCAAA+GGG + Chr6:113320614-113320633 None:intergenic 25.0%
! ATAAGTCAAACTGTTTCATA+AGG - Chr6:113319628-113319647 MsG0680035844.01.T01:intron 25.0%
! ATATACAAAACACTAATGCA+TGG - Chr6:113321641-113321660 MsG0680035844.01.T01:intron 25.0%
! ATTTAGTAGCAAACATATTG+TGG - Chr6:113318383-113318402 MsG0680035844.01.T01:intron 25.0%
! CTAAATAATGAATTCTTACG+AGG + Chr6:113318369-113318388 None:intergenic 25.0%
! CTGAATTTATTGTTCTTTAC+AGG - Chr6:113321807-113321826 MsG0680035844.01.T01:five_prime_UTR 25.0%
! GAAAGATTGGATTGAAAATT+TGG + Chr6:113317610-113317629 None:intergenic 25.0%
! TAAGGCCTATTTAATTAAAC+AGG - Chr6:113318176-113318195 MsG0680035844.01.T01:intron 25.0%
! TAATCCTAGATCATATAAGT+AGG - Chr6:113318051-113318070 MsG0680035844.01.T01:intron 25.0%
! TAGTGTCTGTATAATTTCAA+AGG + Chr6:113320615-113320634 None:intergenic 25.0%
! TCTCTTTAATAAGGTATGTT+TGG - Chr6:113319448-113319467 MsG0680035844.01.T01:intron 25.0%
! TGGATTGTTGAAAATTGAAT+TGG + Chr6:113317653-113317672 None:intergenic 25.0%
! TTCTAATTTCACTTAATCCA+TGG - Chr6:113320783-113320802 MsG0680035844.01.T01:intron 25.0%
! TTTAGTAGCAAACATATTGT+GGG - Chr6:113318384-113318403 MsG0680035844.01.T01:intron 25.0%
! TTTCGTAGTTCTCTTTAATA+AGG - Chr6:113319439-113319458 MsG0680035844.01.T01:intron 25.0%
! TTTGTATATAAGTACTACTC+TGG + Chr6:113321630-113321649 None:intergenic 25.0%
!! AATAATGTTACGAGAGTTTT+TGG - Chr6:113317725-113317744 MsG0680035844.01.T01:intron 25.0%
!! ATTAGTTTATCCAATCAACA+TGG + Chr6:113318010-113318029 None:intergenic 25.0%
!! GTTTGATTATTTGTACCTTT+TGG - Chr6:113321373-113321392 MsG0680035844.01.T01:intron 25.0%
!! TAAAAGCCTATTTTATCCTA+AGG + Chr6:113318467-113318486 None:intergenic 25.0%
!!! ATGGTAAACTGTTTTTCATA+AGG - Chr6:113319358-113319377 MsG0680035844.01.T01:intron 25.0%
!!! GTTGAAAATTGAATTGGTTT+TGG + Chr6:113317647-113317666 None:intergenic 25.0%
AAAAATAAGCCAATCGAAAC+GGG + Chr6:113318677-113318696 None:intergenic 30.0%
AAAAATGAGCCAATCTAAAC+GGG - Chr6:113318824-113318843 MsG0680035844.01.T01:CDS 30.0%
AAACACAAGTCTTCATATGA+TGG - Chr6:113318310-113318329 MsG0680035844.01.T01:CDS 30.0%
AAAGAAAGAACAAAAAGGGT+AGG - Chr6:113320711-113320730 MsG0680035844.01.T01:intron 30.0%
AACACAAATAAGTAAACCCT+TGG + Chr6:113319782-113319801 None:intergenic 30.0%
AAGCTATCCTGAAAAGTTTA+TGG - Chr6:113320262-113320281 MsG0680035844.01.T01:intron 30.0%
AATAAGCTCTTTATCCAAAC+AGG - Chr6:113319909-113319928 MsG0680035844.01.T01:intron 30.0%
ACGAATAGATAAACAGTTCA+AGG + Chr6:113320531-113320550 None:intergenic 30.0%
ACTAGAAATGCTTGAGAAAA+AGG - Chr6:113320631-113320650 MsG0680035844.01.T01:intron 30.0%
AGCTATCCTGAAAAGTTTAT+GGG - Chr6:113320263-113320282 MsG0680035844.01.T01:intron 30.0%
ATCCTAGATCATATAAGTAG+GGG - Chr6:113318053-113318072 MsG0680035844.01.T01:intron 30.0%
CAAAAATAAGCCAATCGAAA+CGG + Chr6:113318678-113318697 None:intergenic 30.0%
CACCAAAAGAAAGAACAAAA+AGG - Chr6:113320706-113320725 MsG0680035844.01.T01:intron 30.0%
CATATGAAGACTTGTGTTTA+TGG + Chr6:113318309-113318328 None:intergenic 30.0%
CTACTCTGGACTTAAAATAT+AGG + Chr6:113321616-113321635 None:intergenic 30.0%
GCCAAGTATTTATGGATAAA+TGG - Chr6:113319339-113319358 MsG0680035844.01.T01:intron 30.0%
GTGCAATTGCAAATAGTTTA+GGG - Chr6:113319677-113319696 MsG0680035844.01.T01:intron 30.0%
TAAGCTGAAAACATAGCTTA+TGG - Chr6:113320288-113320307 MsG0680035844.01.T01:intron 30.0%
TAAGGTACATGTAGAGTTTA+TGG - Chr6:113319376-113319395 MsG0680035844.01.T01:intron 30.0%
TGAAAATTTGGATCTGGATT+CGG + Chr6:113317598-113317617 None:intergenic 30.0%
TGAAGAAGATGAAGAAGTTT+GGG + Chr6:113317550-113317569 None:intergenic 30.0%
TTAGTTATAATTGAGACCAG+AGG - Chr6:113318961-113318980 MsG0680035844.01.T01:intron 30.0%
TTATCCAAACAAAACCTGTA+GGG + Chr6:113318643-113318662 None:intergenic 30.0%
TTCAGACAGATTACGAAAAA+TGG - Chr6:113321483-113321502 MsG0680035844.01.T01:intron 30.0%
TTCATCTTCTTCAACATCAT+CGG - Chr6:113317557-113317576 MsG0680035844.01.T01:CDS 30.0%
TTGAAGAAGATGAAGAAGTT+TGG + Chr6:113317551-113317570 None:intergenic 30.0%
TTGAATGTAACCACATGTAT+CGG - Chr6:113321695-113321714 MsG0680035844.01.T01:intron 30.0%
TTGGATAAAGAGCTTATTTC+CGG + Chr6:113319907-113319926 None:intergenic 30.0%
TTGGATTGAAAATTTGGATC+TGG + Chr6:113317604-113317623 None:intergenic 30.0%
TTGTTTGGATAAACAACCAA+GGG - Chr6:113318651-113318670 MsG0680035844.01.T01:CDS 30.0%
TTTATCCAAACAAAACCTGT+AGG + Chr6:113318644-113318663 None:intergenic 30.0%
TTTCTATAAGCTCTTGCAAA+TGG - Chr6:113319715-113319734 MsG0680035844.01.T01:intron 30.0%
TTTGTTTGGATAAACAACCA+AGG - Chr6:113318650-113318669 MsG0680035844.01.T01:CDS 30.0%
! ACCCTTTTTGTTCTTTCTTT+TGG + Chr6:113320711-113320730 None:intergenic 30.0%
! CTTATTCCCATAAACTTTTC+AGG + Chr6:113320272-113320291 None:intergenic 30.0%
! TATCCAAAATGGCCTTAAAT+GGG + Chr6:113320128-113320147 None:intergenic 30.0%
! TTATCCAAAATGGCCTTAAA+TGG + Chr6:113320129-113320148 None:intergenic 30.0%
!! AGGAAGTATCATATAAGGAT+TGG - Chr6:113318981-113319000 MsG0680035844.01.T01:intron 30.0%
!! CTTTCTTTTGGTGTATTCTT+TGG + Chr6:113320699-113320718 None:intergenic 30.0%
!! TCATATAAGGATTGGTTTGA+TGG - Chr6:113318989-113319008 MsG0680035844.01.T01:intron 30.0%
!!! TGATTTTTTGTTTTACGCAG+CGG - Chr6:113320815-113320834 MsG0680035844.01.T01:intron 30.0%
AAAAAGTTCAAGGGTCTATC+TGG + Chr6:113320395-113320414 None:intergenic 35.0%
AAAAATCAAGTCACGTTCCA+TGG + Chr6:113320803-113320822 None:intergenic 35.0%
AAATGAGCTGAAGAGAGTTT+AGG - Chr6:113319239-113319258 MsG0680035844.01.T01:intron 35.0%
AATGAGCTGAAGAGAGTTTA+GGG - Chr6:113319240-113319259 MsG0680035844.01.T01:intron 35.0%
AGCTCATTTCCATAACTCTT+CGG + Chr6:113319228-113319247 None:intergenic 35.0%
ATAAGTTCGTGTGTGTGTTA+GGG - Chr6:113319813-113319832 MsG0680035844.01.T01:intron 35.0%
ATTGCCCTATATCCCATTTA+AGG - Chr6:113320113-113320132 MsG0680035844.01.T01:intron 35.0%
CACTCATACACAGTTCATAT+AGG + Chr6:113320060-113320079 None:intergenic 35.0%
CATAAATACTTGGCCTGTTT+GGG + Chr6:113319333-113319352 None:intergenic 35.0%
CCACTTAGACAAATTAAACG+AGG - Chr6:113317782-113317801 MsG0680035844.01.T01:intron 35.0%
CCTATTTAATTAAACAGGCC+AGG - Chr6:113318181-113318200 MsG0680035844.01.T01:intron 35.0%
CCTGGCCTGTTTAATTAAAT+AGG + Chr6:113318184-113318203 None:intergenic 35.0%
CCTTATAAAAAGCTTGATCC+TGG + Chr6:113318161-113318180 None:intergenic 35.0%
CTGGCCTACTTCAAAATTAT+AGG + Chr6:113318577-113318596 None:intergenic 35.0%
CTTCAGATTGAACACATGTT+CGG + Chr6:113321742-113321761 None:intergenic 35.0%
GAAAACATAGCTTATGGACA+TGG - Chr6:113320294-113320313 MsG0680035844.01.T01:intron 35.0%
GGTGCAATTGCAAATAGTTT+AGG - Chr6:113319676-113319695 MsG0680035844.01.T01:intron 35.0%
TAAATTGTCCCGAAGAGTTA+TGG - Chr6:113319216-113319235 MsG0680035844.01.T01:intron 35.0%
TAGATCATATAAGTAGGGGT+GGG - Chr6:113318057-113318076 MsG0680035844.01.T01:intron 35.0%
TATCCAAACAAAACCTGTAG+GGG + Chr6:113318642-113318661 None:intergenic 35.0%
TATGAAGAAGCTTAATAGGC+CGG + Chr6:113318241-113318260 None:intergenic 35.0%
TCCTTATATGATACTTCCTC+TGG + Chr6:113318980-113318999 None:intergenic 35.0%
TGCAATTACTCCATGTTGAT+TGG - Chr6:113317997-113318016 MsG0680035844.01.T01:intron 35.0%
TTCAATGTTTGAAGAGGAAG+AGG - Chr6:113320841-113320860 MsG0680035844.01.T01:intron 35.0%
TTGAATCTGCTTCATGTTCT+CGG + Chr6:113321261-113321280 None:intergenic 35.0%
TTGTTCTTTACAGGACGAAT+TGG - Chr6:113321816-113321835 MsG0680035844.01.T01:five_prime_UTR 35.0%
! AAACTCTGAAGAACAAGTAG+AGG + Chr6:113320756-113320775 None:intergenic 35.0%
! AAGATGAAGAAGTTTGGGTT+AGG + Chr6:113317545-113317564 None:intergenic 35.0%
! AATGGCCTTAAATGGGATAT+AGG + Chr6:113320121-113320140 None:intergenic 35.0%
! AGGCTTTTAAATAGGCTTTC+AGG - Chr6:113318478-113318497 MsG0680035844.01.T01:CDS 35.0%
! AGTTTTGCCTATTTAGGAGT+AGG - Chr6:113318422-113318441 MsG0680035844.01.T01:intron 35.0%
! ATGGCCTTAAATGGGATATA+GGG + Chr6:113320120-113320139 None:intergenic 35.0%
! ATGTGTTCAATCTGAAGTGT+TGG - Chr6:113321745-113321764 MsG0680035844.01.T01:five_prime_UTR 35.0%
! CCAGGATCAAGCTTTTTATA+AGG - Chr6:113318158-113318177 MsG0680035844.01.T01:intron 35.0%
! TAATCTTCTTTTGCGTCTTC+TGG - Chr6:113320971-113320990 MsG0680035844.01.T01:intron 35.0%
! TCTTGTTTGAGCTTATCTAC+TGG + Chr6:113320368-113320387 None:intergenic 35.0%
!! ACCAGAGGAAGTATCATATA+AGG - Chr6:113318976-113318995 MsG0680035844.01.T01:intron 35.0%
!! CCTCGTTTAATTTGTCTAAG+TGG + Chr6:113317785-113317804 None:intergenic 35.0%
!! TATCCCATTTAAGGCCATTT+TGG - Chr6:113320122-113320141 MsG0680035844.01.T01:intron 35.0%
!! TTGGTTCTGTTTCTTTCTAC+AGG - Chr6:113321190-113321209 MsG0680035844.01.T01:intron 35.0%
!!! AATTGGTTTTGGATCGTGAA+AGG + Chr6:113317636-113317655 None:intergenic 35.0%
!!! ATTGGTTTTGGATCGTGAAA+GGG + Chr6:113317635-113317654 None:intergenic 35.0%
!!! CAGGCCTATAATTTTGAAGT+AGG - Chr6:113318570-113318589 MsG0680035844.01.T01:intron 35.0%
!!! CTATAATTTTGAAGTAGGCC+AGG - Chr6:113318575-113318594 MsG0680035844.01.T01:intron 35.0%
AAAACTCGGTATCTGACCTA+AGG + Chr6:113319125-113319144 None:intergenic 40.0%
AACTATTAAACCCATCAGGC+CGG - Chr6:113318219-113318238 MsG0680035844.01.T01:intron 40.0%
AATACAACTGTGTTCACACC+TGG + Chr6:113320920-113320939 None:intergenic 40.0%
AATAGAGGGCTCAATTGAAG+CGG + Chr6:113319066-113319085 None:intergenic 40.0%
AATTCATCTTCCTCAGGAGT+CGG + Chr6:113321969-113321988 None:intergenic 40.0%
AGTGCTGTACAATACTCTCT+CGG - Chr6:113321404-113321423 MsG0680035844.01.T01:intron 40.0%
ATTGAGACTAGAGCGAGTAA+AGG + Chr6:113318895-113318914 None:intergenic 40.0%
CAATTGAGCCCTCTATTAGT+GGG - Chr6:113319069-113319088 MsG0680035844.01.T01:intron 40.0%
CACCCCTACTTATATGATCT+AGG + Chr6:113318058-113318077 None:intergenic 40.0%
CACTTGTGATAAGTCCTGTT+TGG + Chr6:113319926-113319945 None:intergenic 40.0%
CAGCACTATACACAACCAAA+AGG + Chr6:113321391-113321410 None:intergenic 40.0%
CATAAGTTCGTGTGTGTGTT+AGG - Chr6:113319812-113319831 MsG0680035844.01.T01:intron 40.0%
CCAAACAGGCCAAGTATTTA+TGG - Chr6:113319331-113319350 MsG0680035844.01.T01:intron 40.0%
CCATAAATACTTGGCCTGTT+TGG + Chr6:113319334-113319353 None:intergenic 40.0%
CGGCAATTCAATGTTTGAAG+AGG - Chr6:113320835-113320854 MsG0680035844.01.T01:intron 40.0%
CTAGATCATATAAGTAGGGG+TGG - Chr6:113318056-113318075 MsG0680035844.01.T01:intron 40.0%
CTGTTCATTTATCTCGTCCA+TGG + Chr6:113321237-113321256 None:intergenic 40.0%
GCAAACATATTGTGGGCTTT+AGG - Chr6:113318391-113318410 MsG0680035844.01.T01:intron 40.0%
GCTAGGCCTTAGGATAAAAT+AGG - Chr6:113318458-113318477 MsG0680035844.01.T01:CDS 40.0%
GCTCATTTCCATAACTCTTC+GGG + Chr6:113319227-113319246 None:intergenic 40.0%
GGAAGCAGAACTTGAAGAAT+TGG - Chr6:113321837-113321856 MsG0680035844.01.T01:five_prime_UTR 40.0%
GTGTAAGCCTACTCCTAAAT+AGG + Chr6:113318432-113318451 None:intergenic 40.0%
TAATTAGGGCCCGTTTAGAT+TGG + Chr6:113318836-113318855 None:intergenic 40.0%
TCAAAATTATAGGCCTGACC+TGG + Chr6:113318567-113318586 None:intergenic 40.0%
TCAATTGAGCCCTCTATTAG+TGG - Chr6:113319068-113319087 MsG0680035844.01.T01:intron 40.0%
TCATATAAGTCGACCCAAAC+AGG - Chr6:113319317-113319336 MsG0680035844.01.T01:intron 40.0%
TCGAATAAGTCAATCCAAGC+AGG - Chr6:113319756-113319775 MsG0680035844.01.T01:intron 40.0%
TCGTGAAAGGGATGAAAGAT+TGG + Chr6:113317623-113317642 None:intergenic 40.0%
TTTGAACTTGAGACCTAGAG+AGG + Chr6:113319042-113319061 None:intergenic 40.0%
! TAGCCTATTTAAAGCCTAGC+TGG - Chr6:113318113-113318132 MsG0680035844.01.T01:intron 40.0%
! TGGTTTGATGGCATAGACTT+GGG - Chr6:113319001-113319020 MsG0680035844.01.T01:intron 40.0%
! TTGGTTTGATGGCATAGACT+TGG - Chr6:113319000-113319019 MsG0680035844.01.T01:intron 40.0%
!! AAGGTATTGCGTAGAGCTTA+TGG - Chr6:113319647-113319666 MsG0680035844.01.T01:intron 40.0%
!! AGCTAGGCTTTAAATAGGCT+AGG + Chr6:113318114-113318133 None:intergenic 40.0%
!! GCAGATTCAAGAAGCATTGT+CGG - Chr6:113321271-113321290 MsG0680035844.01.T01:intron 40.0%
!! GGCTTCATCAGGCTTTAAAA+AGG - Chr6:113318499-113318518 MsG0680035844.01.T01:CDS 40.0%
!! TGTTCAATCTGAAGTGTTGG+TGG - Chr6:113321748-113321767 MsG0680035844.01.T01:five_prime_UTR 40.0%
!!! GTTTTTTGCAAGCATTAGCC+TGG + Chr6:113318202-113318221 None:intergenic 40.0%
AAAACCTGTAGGGGTGGAAA+TGG + Chr6:113318633-113318652 None:intergenic 45.0%
AAACCTGTAGGGGTGGAAAT+GGG + Chr6:113318632-113318651 None:intergenic 45.0%
AAATCAGCAGCTGCACCAAT+TGG + Chr6:113321299-113321318 None:intergenic 45.0%
AACAGGAGCAGCTACTATGA+AGG - Chr6:113321065-113321084 MsG0680035844.01.T01:intron 45.0%
AAGCACACATGAGGCTGTTT+GGG + Chr6:113320342-113320361 None:intergenic 45.0%
ACCTAAGGACTGACTAATCC+AGG + Chr6:113319110-113319129 None:intergenic 45.0%
ACGGTAGATGCGTTAAGAAC+AGG - Chr6:113321048-113321067 MsG0680035844.01.T01:intron 45.0%
AGATGAATTGGCAGCTTTGC+AGG - Chr6:113321980-113321999 MsG0680035844.01.T01:five_prime_UTR 45.0%
ATAGGCTTTCAGGCTTCATC+AGG - Chr6:113318488-113318507 MsG0680035844.01.T01:CDS 45.0%
ATATAAGTAGGGGTGGGAAC+AGG - Chr6:113318063-113318082 MsG0680035844.01.T01:intron 45.0%
ATCTCACCACCCACTAATAG+AGG + Chr6:113319081-113319100 None:intergenic 45.0%
CCTAAGGACTGACTAATCCA+GGG + Chr6:113319109-113319128 None:intergenic 45.0%
CCTCGAAAATGAGCCTATGA+CGG - Chr6:113318533-113318552 MsG0680035844.01.T01:intron 45.0%
CTAAGGACTGACTAATCCAG+GGG + Chr6:113319108-113319127 None:intergenic 45.0%
CTAAGTGGCAATAGCATTGC+TGG + Chr6:113317770-113317789 None:intergenic 45.0%
CTCGAAAATGAGCCTATGAC+GGG - Chr6:113318534-113318553 MsG0680035844.01.T01:intron 45.0%
GACTCCTGAGGAAGATGAAT+TGG - Chr6:113321968-113321987 MsG0680035844.01.T01:five_prime_UTR 45.0%
GCCCAGCTCGTTTATTAACA+GGG - Chr6:113318135-113318154 MsG0680035844.01.T01:intron 45.0%
GCCCTGTTAATAAACGAGCT+GGG + Chr6:113318139-113318158 None:intergenic 45.0%
GCGTAGAGCTTATGGAAATG+AGG - Chr6:113319655-113319674 MsG0680035844.01.T01:intron 45.0%
GTGCTGTACAATACTCTCTC+GGG - Chr6:113321405-113321424 MsG0680035844.01.T01:intron 45.0%
TAAGCACACATGAGGCTGTT+TGG + Chr6:113320343-113320362 None:intergenic 45.0%
TACTGGCATAAGCACACATG+AGG + Chr6:113320351-113320370 None:intergenic 45.0%
TAGGCTTACACGTTGTTGCT+AGG - Chr6:113318441-113318460 MsG0680035844.01.T01:CDS 45.0%
TCTCACCACCCACTAATAGA+GGG + Chr6:113319080-113319099 None:intergenic 45.0%
! CTATTAGTGGGTGGTGAGAT+TGG - Chr6:113319081-113319100 MsG0680035844.01.T01:intron 45.0%
! CTTCTGCGTGTGGCTTTTTA+AGG + Chr6:113320667-113320686 None:intergenic 45.0%
! GAACAACAAGTTGAGCAGCT+TGG - Chr6:113320870-113320889 MsG0680035844.01.T01:intron 45.0%
! TCTTCTTTTGCGTCTTCTGG+TGG - Chr6:113320974-113320993 MsG0680035844.01.T01:intron 45.0%
! TGATGACGTTGACAAGACCA+TGG - Chr6:113321217-113321236 MsG0680035844.01.T01:intron 45.0%
! TTGGATCTGGATTCGGTAGA+TGG + Chr6:113317591-113317610 None:intergenic 45.0%
!! AAGTGTTGGTGGTGCTACAT+TGG - Chr6:113321759-113321778 MsG0680035844.01.T01:five_prime_UTR 45.0%
!! AGAATTGGAGAGTGCTGAGT+TGG - Chr6:113321852-113321871 MsG0680035844.01.T01:five_prime_UTR 45.0%
!! ATGAGCCTATGACGGGTAAT+AGG - Chr6:113318541-113318560 MsG0680035844.01.T01:intron 45.0%
!! CAATACAGTGCCGATACATG+TGG + Chr6:113321708-113321727 None:intergenic 45.0%
!! CATCAGGCTTTAAAAAGGCC+AGG - Chr6:113318504-113318523 MsG0680035844.01.T01:CDS 45.0%
!!! GCTTTTTCAACTTCTGCGTG+TGG + Chr6:113320677-113320696 None:intergenic 45.0%
!!! TTTTGAAGTAGGCCAGGCTT+AGG - Chr6:113318581-113318600 MsG0680035844.01.T01:intron 45.0%
!! AAATAAAATAAATAAGAAAA+AGG + Chr6:113317877-113317896 None:intergenic 5.0%
!! AATAAAATAAATAAGAAAAA+GGG + Chr6:113317876-113317895 None:intergenic 5.0%
AAGTAAACCCTTGGCCTGCT+TGG + Chr6:113319773-113319792 None:intergenic 50.0%
AAGTCAATCCAAGCAGGCCA+AGG - Chr6:113319762-113319781 MsG0680035844.01.T01:intron 50.0%
ACACGTTGTTGCTAGGCCTT+AGG - Chr6:113318448-113318467 MsG0680035844.01.T01:CDS 50.0%
AGTCAATCCAAGCAGGCCAA+GGG - Chr6:113319763-113319782 MsG0680035844.01.T01:intron 50.0%
ATCGGCACTGTATTGCGTGT+CGG - Chr6:113321713-113321732 MsG0680035844.01.T01:intron 50.0%
CCAAACAAAACCTGTAGGGG+TGG + Chr6:113318639-113318658 None:intergenic 50.0%
CCAGTTGCGTATTCATGACC+AGG - Chr6:113320899-113320918 MsG0680035844.01.T01:intron 50.0%
CCTGGTCATGAATACGCAAC+TGG + Chr6:113320902-113320921 None:intergenic 50.0%
GCTCGTTTATTAACAGGGCC+AGG - Chr6:113318140-113318159 MsG0680035844.01.T01:intron 50.0%
GCTGCCAATTCATCTTCCTC+AGG + Chr6:113321975-113321994 None:intergenic 50.0%
GGCCCAGCTCGTTTATTAAC+AGG - Chr6:113318134-113318153 MsG0680035844.01.T01:intron 50.0%
GGCCCTGTTAATAAACGAGC+TGG + Chr6:113318140-113318159 None:intergenic 50.0%
TAACGCATCTACCGTTTCCG+TGG + Chr6:113321043-113321062 None:intergenic 50.0%
TGCTAAAGCCACCACGGAAA+CGG - Chr6:113321029-113321048 MsG0680035844.01.T01:intron 50.0%
TTGAGCCCTCTATTAGTGGG+TGG - Chr6:113319072-113319091 MsG0680035844.01.T01:intron 50.0%
! CCGTCATAGGCTCATTTTCG+AGG + Chr6:113318536-113318555 None:intergenic 50.0%
! GTGAGAGTACACTCCTCTCT+AGG - Chr6:113319026-113319045 MsG0680035844.01.T01:intron 50.0%
! TCTTTTGCGTCTTCTGGTGG+TGG - Chr6:113320977-113320996 MsG0680035844.01.T01:intron 50.0%
!! AGAAGGTGCTAAAGCCACCA+CGG - Chr6:113321023-113321042 MsG0680035844.01.T01:intron 50.0%
!! CCCTGGATTAGTCAGTCCTT+AGG - Chr6:113319106-113319125 MsG0680035844.01.T01:intron 50.0%
!! GAAGCATTGTCGGCTCCAAT+TGG - Chr6:113321281-113321300 MsG0680035844.01.T01:intron 50.0%
!! GCTTTAAAAAGGCCAGGCTC+AGG - Chr6:113318510-113318529 MsG0680035844.01.T01:CDS 50.0%
!! GGGCCAGCTAGGCTTTAAAT+AGG + Chr6:113318119-113318138 None:intergenic 50.0%
!! TGTTGGTGGTGCTACATTGG+TGG - Chr6:113321762-113321781 MsG0680035844.01.T01:five_prime_UTR 50.0%
!!! CCACCCCTACAGGTTTTGTT+TGG - Chr6:113318636-113318655 MsG0680035844.01.T01:CDS 50.0%
!!! TGCAGCTGCTGATTTTGACG+AGG - Chr6:113321304-113321323 MsG0680035844.01.T01:intron 50.0%
AACCAAGGGCCCGTTTCGAT+TGG - Chr6:113318665-113318684 MsG0680035844.01.T01:CDS 55.0%
AGCTTAATAGGCCGGCCTGA+TGG + Chr6:113318233-113318252 None:intergenic 55.0%
ATAAACGAGCTGGGCCAGCT+AGG + Chr6:113318130-113318149 None:intergenic 55.0%
CCTGGCCTATTACCCGTCAT+AGG + Chr6:113318549-113318568 None:intergenic 55.0%
GCTTAATAGGCCGGCCTGAT+GGG + Chr6:113318232-113318251 None:intergenic 55.0%
TAGCCCATTTCCACCCCTAC+AGG - Chr6:113318626-113318645 MsG0680035844.01.T01:intron 55.0%
! GAGTCGGCTTTGCAGGAACA+GGG + Chr6:113321953-113321972 None:intergenic 55.0%
! GGCTTTGTAAGGCCTAAGCC+TGG + Chr6:113318596-113318615 None:intergenic 55.0%
! TGTAGGGGTGGAAATGGGCT+AGG + Chr6:113318627-113318646 None:intergenic 55.0%
!! CCTATGACGGGTAATAGGCC+AGG - Chr6:113318546-113318565 MsG0680035844.01.T01:intron 55.0%
!! TCATTTTCGAGGCCTGAGCC+TGG + Chr6:113318525-113318544 None:intergenic 55.0%
AGCCAATCGAAACGGGCCCT+TGG + Chr6:113318670-113318689 None:intergenic 60.0%
AGGCCTTACAAAGCCCAGCC+CGG - Chr6:113318601-113318620 MsG0680035844.01.T01:intron 60.0%
CCACAGTGCATGTCCCAGCT+GGG - Chr6:113321913-113321932 MsG0680035844.01.T01:five_prime_UTR 60.0%
CCAGCTGGGACATGCACTGT+GGG + Chr6:113321915-113321934 None:intergenic 60.0%
CGCATCTACCGTTTCCGTGG+TGG + Chr6:113321040-113321059 None:intergenic 60.0%
GACGGGTAATAGGCCAGGTC+AGG - Chr6:113318551-113318570 MsG0680035844.01.T01:intron 60.0%
GGAGCAGGAGCTGTAGTTGC+TGG + Chr6:113321894-113321913 None:intergenic 60.0%
GGCAGCTTTGCAGGCTGAGA+TGG - Chr6:113321989-113322008 MsG0680035844.01.T01:five_prime_UTR 60.0%
TTTGCAGGAACAGGGCGTGC+AGG + Chr6:113321945-113321964 None:intergenic 60.0%
! GGAGTCGGCTTTGCAGGAAC+AGG + Chr6:113321954-113321973 None:intergenic 60.0%
! TCCTCAGGAGTCGGCTTTGC+AGG + Chr6:113321960-113321979 None:intergenic 60.0%
! TCCTGCAAAGCCGACTCCTG+AGG - Chr6:113321956-113321975 MsG0680035844.01.T01:five_prime_UTR 60.0%
AGTAGGGGTGGGAACAGGCC+AGG - Chr6:113318068-113318087 MsG0680035844.01.T01:intron 65.0%
CAGTGCATGTCCCAGCTGGG+AGG - Chr6:113321916-113321935 MsG0680035844.01.T01:five_prime_UTR 65.0%
CCCACAGTGCATGTCCCAGC+TGG - Chr6:113321912-113321931 MsG0680035844.01.T01:five_prime_UTR 65.0%
CCCAGCTGGGACATGCACTG+TGG + Chr6:113321916-113321935 None:intergenic 65.0%
GGGACATGCACTGTGGGAGC+AGG + Chr6:113321909-113321928 None:intergenic 65.0%
GTGCAGGTTGCCTCCCAGCT+GGG + Chr6:113321929-113321948 None:intergenic 65.0%
! AGGCCGGGCTGGGCTTTGTA+AGG + Chr6:113318607-113318626 None:intergenic 65.0%
! GGGTGGTGAGATTGGTCCCC+TGG - Chr6:113319089-113319108 MsG0680035844.01.T01:intron 65.0%
!! GAAATGGGCTAGGCCGGGCT+GGG + Chr6:113318617-113318636 None:intergenic 65.0%
!! GGGGTGGAAATGGGCTAGGC+CGG + Chr6:113318623-113318642 None:intergenic 65.0%
!! GGGTGGAAATGGGCTAGGCC+GGG + Chr6:113318622-113318641 None:intergenic 65.0%
AACAGGCCAGGCCGTCCGAC+AGG - Chr6:113318080-113318099 MsG0680035844.01.T01:intron 70.0%
ACAGGCCAGGCCGTCCGACA+GGG - Chr6:113318081-113318100 MsG0680035844.01.T01:intron 70.0%
AGGCCGTAGCCCCTGTCGGA+CGG + Chr6:113318094-113318113 None:intergenic 70.0%
AGGCCGTCCGACAGGGGCTA+CGG - Chr6:113318088-113318107 MsG0680035844.01.T01:intron 70.0%
CGTGCAGGTTGCCTCCCAGC+TGG + Chr6:113321930-113321949 None:intergenic 70.0%
GGCTAGGCCGTAGCCCCTGT+CGG + Chr6:113318098-113318117 None:intergenic 70.0%
!! GGAAATGGGCTAGGCCGGGC+TGG + Chr6:113318618-113318637 None:intergenic 70.0%
CAGGCCAGGCCGTCCGACAG+GGG - Chr6:113318082-113318101 MsG0680035844.01.T01:intron 75.0%
GTAGCCCCTGTCGGACGGCC+TGG + Chr6:113318089-113318108 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr6 gene 113317528 113322019 113317528 ID=MsG0680035844.01;Name=MsG0680035844.01
Chr6 mRNA 113317528 113322019 113317528 ID=MsG0680035844.01.T01;Parent=MsG0680035844.01;Name=MsG0680035844.01.T01;_AED=0.33;_eAED=0.33;_QI=285|0.6|0.66|1|0.8|0.66|6|0|171
Chr6 exon 113317528 113317656 113317528 ID=MsG0680035844.01.T01:exon:15225;Parent=MsG0680035844.01.T01
Chr6 exon 113318222 113318335 113318222 ID=MsG0680035844.01.T01:exon:15224;Parent=MsG0680035844.01.T01
Chr6 exon 113318440 113318535 113318440 ID=MsG0680035844.01.T01:exon:15223;Parent=MsG0680035844.01.T01
Chr6 exon 113318627 113318712 113318627 ID=MsG0680035844.01.T01:exon:15222;Parent=MsG0680035844.01.T01
Chr6 exon 113318819 113318918 113318819 ID=MsG0680035844.01.T01:exon:15221;Parent=MsG0680035844.01.T01
Chr6 exon 113321744 113322019 113321744 ID=MsG0680035844.01.T01:exon:15220;Parent=MsG0680035844.01.T01
Chr6 five_prime_UTR 113321744 113322019 113321744 ID=MsG0680035844.01.T01:five_prime_utr;Parent=MsG0680035844.01.T01
Chr6 five_prime_UTR 113318910 113318918 113318910 ID=MsG0680035844.01.T01:five_prime_utr;Parent=MsG0680035844.01.T01
Chr6 CDS 113318819 113318909 113318819 ID=MsG0680035844.01.T01:cds;Parent=MsG0680035844.01.T01
Chr6 CDS 113318627 113318712 113318627 ID=MsG0680035844.01.T01:cds;Parent=MsG0680035844.01.T01
Chr6 CDS 113318440 113318535 113318440 ID=MsG0680035844.01.T01:cds;Parent=MsG0680035844.01.T01
Chr6 CDS 113318222 113318335 113318222 ID=MsG0680035844.01.T01:cds;Parent=MsG0680035844.01.T01
Chr6 CDS 113317528 113317656 113317528 ID=MsG0680035844.01.T01:cds;Parent=MsG0680035844.01.T01
Gene Sequence

>MsG0680035844.01.T01

ATGCTTGAGAAAAAGGAAAATGTACTCCTTAAAAAGCCACACGCAGAAGTTGAAAAAGCCAAAGAATACACCAAAAGAAAGAACAAAAAGGCGGCAATTCAATGTTTGAAGAGGAAGAGGTTATATGAACAACAAGTTGAGCAGCTTGGTAATTTCCAGTTGCGTATTCATGACCAGATGATAATGTTAGAAGGTGCTAAAGCCACCACGGAAACGGTAGATGCGTTAAGAACAGGAGCAGCTACTATGAAGGCTATGCAGAAAGCAACGTATGATATTGATGACGTTGACAAGACCATGGACGAGATAAATGAACAGACCGAGAACATGAAGCAGATTCAAGAAGCATTGTCGGCTCCAATTGGTGCAGCTGCTGATTTTGACGAGCCAGCAACTACAGCTCCTGCTCCCACAGTGCATGTCCCAGCTGGGAGGCAACCTGCACGCCCTGTTCCTGCAAAGCCGACTCCTGAGGAAGATGAATTGGCAGCTTTGCAGGCTGAGATGGCACTTTGA

Protein sequence

>MsG0680035844.01.T01

MLEKKENVLLKKPHAEVEKAKEYTKRKNKKAAIQCLKRKRLYEQQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGAATMKAMQKATYDIDDVDKTMDEINEQTENMKQIQEALSAPIGAAADFDEPATTAPAPTVHVPAGRQPARPVPAKPTPEEDELAALQAEMAL*