AlfalfaGEDB | MsG0380014770.01

M. sativa cultivar ZhongmuNo.1 / MsG0380014770.01

KEGG: -
GO: -
PFAM: PF01713

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014770.01.T01	KEH34260.1	91.935	372	15	2	1	371	1	358	0	583
MsG0380014770.01.T01	KEH34260.1	96.875	96	3	0	372	467	423	518	7.48E-55	202

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014770.01.T01	O65573	72.115	104	28	1	372	474	415	518	1.04E-43	164

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014770.01.T01	A0A072V7V2	91.935	372	15	2	1	371	1	358	0.0	583

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047825.01	MsG0380014770.01	0.826937	2.062409e-54	1.962145e-51
MsG0080047869.01	MsG0380014770.01	0.829027	6.477230e-55	6.549061e-52
MsG0080047912.01	MsG0380014770.01	0.820455	6.797885e-53	5.381587e-50
MsG0080047944.01	MsG0380014770.01	0.804839	1.781999e-49	9.284144e-47
MsG0080047957.01	MsG0380014770.01	0.833575	4.929327e-56	5.699825e-53
MsG0080047959.01	MsG0380014770.01	0.858331	8.863459e-63	2.254010e-59
MsG0080048683.01	MsG0380014770.01	0.807557	4.770256e-50	2.665069e-47
MsG0080048764.01	MsG0380014770.01	0.831595	1.526812e-55	1.664714e-52
MsG0080048785.01	MsG0380014770.01	0.813539	2.431838e-51	1.592513e-48
MsG0080048809.01	MsG0380014770.01	-0.837321	5.569195e-57	7.207774e-54

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014770.01.T01	MTR_3g463770	91.935	372	15	2	1	371	1	358	0.0	583
MsG0380014770.01.T01	MTR_3g463770	96.875	96	3	0	372	467	423	518	9.06e-59	202

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014770.01.T01	AT5G58720	72.115	104	28	1	372	474	415	518	1.06e-44	164
MsG0380014770.01.T01	AT5G58720	36.740	362	150	11	14	354	31	334	9.07e-43	159
MsG0380014770.01.T01	AT5G58720	36.740	362	150	11	14	354	31	334	4.57e-43	159
MsG0380014770.01.T01	AT5G58720	84.615	39	6	0	372	410	415	453	1.47e-15	79.3
MsG0380014770.01.T01	AT5G58720	36.740	362	150	11	14	354	31	334	7.36e-43	159
MsG0380014770.01.T01	AT5G58720	80.000	65	13	0	372	436	415	479	3.55e-29	120

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Find 140 sgRNAs with CRISPR-Local

Find 618 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAAGAATCTTCAAAA+GGG	0.462735	3:+59700773	MsG0380014770.01.T01:CDS
AAAAGCTCTGAACATGACAA+AGG	0.701144	3:+59705852	MsG0380014770.01.T01:CDS
AAAATGCAGTCATTGGGACC+TGG	0.589424	3:+59705903	MsG0380014770.01.T01:CDS
AAACAAAGAATCTTCAAAAG+GGG	0.619043	3:+59700774	MsG0380014770.01.T01:CDS
AAAGTTAGAACTTCCTCAGA+AGG	0.608871	3:+59705803	MsG0380014770.01.T01:CDS
AAGAAGATTGTTGCGGTGAC+AGG	0.401846	3:+59701141	MsG0380014770.01.T01:CDS
AAGATCTCAGAAGCTTTATT+TGG	0.160611	3:-59700910	None:intergenic
AAGCAGAGGTTTGGGTATGG+TGG	0.570465	3:+59700933	MsG0380014770.01.T01:CDS
AAGGACTCTAACACCTTCTG+AGG	0.578651	3:-59705816	None:intergenic
AAGGATGAATCAGATGAAAA+CGG	0.467812	3:-59700654	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTGAAAATCACACCTTA+AGG	+	Chr3:59706814-59706833	MsG0380014770.01.T01:intron	30.0%
AAGACATTGATACTAGTTCA+TGG	+	Chr3:59702393-59702412	MsG0380014770.01.T01:intron	30.0%
AAGGATGAATCAGATGAAAA+CGG	-	Chr3:59700657-59700676	None:intergenic	30.0%
AATAACCTCAAACAAAAGCA+AGG	-	Chr3:59703600-59703619	None:intergenic	30.0%
AATTAATACCATGTACTGTG+AGG	-	Chr3:59705207-59705226	None:intergenic	30.0%
ACACCTTCATAAAAGTAAGT+TGG	-	Chr3:59706772-59706791	None:intergenic	30.0%
ACAGTCAACTGAATGTAAAA+GGG	-	Chr3:59703101-59703120	None:intergenic	30.0%
ACGGTTTATAAACACTACAA+AGG	-	Chr3:59707955-59707974	None:intergenic	30.0%
ATAAAAGACACCTTCACAAA+AGG	-	Chr3:59706717-59706736	None:intergenic	30.0%
ATACGAGGATAGTCAATTAA+TGG	-	Chr3:59705633-59705652	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	59700567	59708892	59700567	ID=MsG0380014770.01;Name=MsG0380014770.01
Chr3	mRNA	59700567	59708892	59700567	ID=MsG0380014770.01.T01;Parent=MsG0380014770.01;Name=MsG0380014770.01.T01;_AED=0.39;_eAED=0.41;_QI=154\|0.71\|0.62\|1\|1\|1\|8\|342\|476
Chr3	exon	59700567	59701327	59700567	ID=MsG0380014770.01.T01:exon:18569;Parent=MsG0380014770.01.T01
Chr3	exon	59702491	59702516	59702491	ID=MsG0380014770.01.T01:exon:18570;Parent=MsG0380014770.01.T01
Chr3	exon	59704919	59705051	59704919	ID=MsG0380014770.01.T01:exon:18571;Parent=MsG0380014770.01.T01
Chr3	exon	59705212	59705329	59705212	ID=MsG0380014770.01.T01:exon:18572;Parent=MsG0380014770.01.T01
Chr3	exon	59705743	59705972	59705743	ID=MsG0380014770.01.T01:exon:18573;Parent=MsG0380014770.01.T01
Chr3	exon	59707331	59707447	59707331	ID=MsG0380014770.01.T01:exon:18574;Parent=MsG0380014770.01.T01
Chr3	exon	59707579	59707649	59707579	ID=MsG0380014770.01.T01:exon:18575;Parent=MsG0380014770.01.T01
Chr3	exon	59708422	59708892	59708422	ID=MsG0380014770.01.T01:exon:18576;Parent=MsG0380014770.01.T01
Chr3	five_prime_UTR	59700567	59700720	59700567	ID=MsG0380014770.01.T01:five_prime_utr;Parent=MsG0380014770.01.T01
Chr3	CDS	59700721	59701327	59700721	ID=MsG0380014770.01.T01:cds;Parent=MsG0380014770.01.T01
Chr3	CDS	59702491	59702516	59702491	ID=MsG0380014770.01.T01:cds;Parent=MsG0380014770.01.T01
Chr3	CDS	59704919	59705051	59704919	ID=MsG0380014770.01.T01:cds;Parent=MsG0380014770.01.T01
Chr3	CDS	59705212	59705329	59705212	ID=MsG0380014770.01.T01:cds;Parent=MsG0380014770.01.T01
Chr3	CDS	59705743	59705972	59705743	ID=MsG0380014770.01.T01:cds;Parent=MsG0380014770.01.T01
Chr3	CDS	59707331	59707447	59707331	ID=MsG0380014770.01.T01:cds;Parent=MsG0380014770.01.T01
Chr3	CDS	59707579	59707649	59707579	ID=MsG0380014770.01.T01:cds;Parent=MsG0380014770.01.T01
Chr3	CDS	59708422	59708550	59708422	ID=MsG0380014770.01.T01:cds;Parent=MsG0380014770.01.T01
Chr3	three_prime_UTR	59708551	59708892	59708551	ID=MsG0380014770.01.T01:three_prime_utr;Parent=MsG0380014770.01.T01

Gene Sequence

>MsG0380014770.01.T01

ATGAAGAATTCTCGAAAAAAGAAGAAGCAAAAACCTCCAAAAAAAATGGAAGAAAACAAAGAATCTTCAAAAGGGGTTATCGAAAAACAACAAGAGACAAAAAACCAGGTTTTAGCATCATTGGTTGAAGCTTTTTCATTGTCTTCAATGGAAGAAGCAGTTGCAGCATATGATGTTGCAAAGGGTGATCCAAATAAAGCTTCTGAGATCTTAAGCAGAGGTTTGGGTATGGTGGAGAACGTTGAATACCCTTTTTCTTCGTCTTCTTCGTGTAGTGGTGGTAGCACTAGCAATGGTTTTTCTTCTGGTTTGGATTTGGCTTCGACTTCGGGTTCTTCGGGTTCTTCAGATGGGTTTGTGGAGCAGGTTTGTGGGGAGGGTGTGGTTGGGTTTAAAGGGGGGAAGTTGCAGAAGCAGAAGAAGAAGATTGTTGCGGTGACAGGGACTGTTTCGTTGATTTTGGGGAATGAATATGTGAGGAGGGATGGTGGGAGGAAGAAGAAGTTTGGAAATGAGGTTGTTGATCATGAAGAAGCTGAACAGTTTCTGTATTCCATGCTTGGGAATGATTGTGATCTTAACTTGGCTGTTGTTAGAGATGTTCTTTGTCAATGCGGATATGATGTTGAAAAGGCCTCGGATGTATTGCTTGACTTGGCTGCGAATGAGCGATCCAGTAATGATAGAAATTCTGATTACAGTGTAGACAACATGGACGGTACGAGATTCCTTGTTGATTATGATCATAATGATAGTGTAAGTGTCGTACATGGTATTAATTGTCAAAATTTGTCACAGTTGATAGATAGAAGATCAGAGTGCACATCTCTTTCATCGGAAGGTGACTTTTCTGATAATATATGGGGTCTGGGATCTTTTGGCAGGAATTATGCGGAGGTCCTCACTAGTTCTAAAGCTAATTCTCATATTAGCCCAGGATGCACAAAGTTAGAACTTCCTCAGAAGGTGTTAGAGTCCTTGTTTAACATTCCCAAAAGCTCTGAACATGACAAAGGTACCATGGATTGGAGAAAAATAGCAAAGAAAATGCAGTCATTGGGACCTGGTTTTGATGGTCGTCCAAATGTTGCAGAACCTCAGCAGCGTCCTCGCATGGTATGCAGAAACAAGGATATAGAAAACGTGATAACTATTGATTTGCATGGGCAGCATGTGAAACCAGCAATGAGAATGCTGAAACTTCACCTTCTGTTTGGATCATATGTTCCCTCTGTTCAGATGATAAGGGTTATCACAGGATGTGGATCACATGGTTTTGGGAAATCCAAGCTGAAACAATCGGTTACTAACCTTTTAGATAAGGAGTCAATTGAATGGAGAGAAGAGAACCGAGGAACTGTGTTGATCAAACTCGACGGATGGAGAGAGTATAACTTTCTGGAAGCTGATAGTGATAGCGATAGTGATTGA

Protein sequence

>MsG0380014770.01.T01

MKNSRKKKKQKPPKKMEENKESSKGVIEKQQETKNQVLASLVEAFSLSSMEEAVAAYDVAKGDPNKASEILSRGLGMVENVEYPFSSSSSCSGGSTSNGFSSGLDLASTSGSSGSSDGFVEQVCGEGVVGFKGGKLQKQKKKIVAVTGTVSLILGNEYVRRDGGRKKKFGNEVVDHEEAEQFLYSMLGNDCDLNLAVVRDVLCQCGYDVEKASDVLLDLAANERSSNDRNSDYSVDNMDGTRFLVDYDHNDSVSVVHGINCQNLSQLIDRRSECTSLSSEGDFSDNIWGLGSFGRNYAEVLTSSKANSHISPGCTKLELPQKVLESLFNIPKSSEHDKGTMDWRKIAKKMQSLGPGFDGRPNVAEPQQRPRMVCRNKDIENVITIDLHGQHVKPAMRMLKLHLLFGSYVPSVQMIRVITGCGSHGFGKSKLKQSVTNLLDKESIEWREENRGTVLIKLDGWREYNFLEADSDSDSD*