Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880042557.01.T01 | XP_013444327.1 | 96.903 | 226 | 7 | 0 | 1 | 226 | 1 | 226 | 1.17E-162 | 458 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880042557.01.T01 | Q9ZVD2 | 30.256 | 195 | 106 | 8 | 31 | 196 | 43 | 236 | 1.03E-16 | 79.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880042557.01.T01 | I3S7U3 | 96.903 | 226 | 7 | 0 | 1 | 226 | 1 | 226 | 5.57e-163 | 458 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0780040592.01 | MsG0880042557.01 | 0.804623 | 1.976693e-49 | 1.024022e-46 |
| MsG0880042557.01 | MsG0880045339.01 | 0.828580 | 8.305891e-55 | 8.289935e-52 |
| MsG0880042557.01 | MsG0880047773.01 | 0.844370 | 7.885323e-59 | 1.270220e-55 |
| MsG0280010891.01 | MsG0880042557.01 | 0.833883 | 4.129502e-56 | 4.819781e-53 |
| MsG0480020552.01 | MsG0880042557.01 | 0.868189 | 7.856647e-66 | 2.816788e-62 |
| MsG0480020817.01 | MsG0880042557.01 | 0.831627 | 1.499495e-55 | 1.636417e-52 |
| MsG0480020818.01 | MsG0880042557.01 | 0.834946 | 2.233488e-56 | 2.691335e-53 |
| MsG0480023114.01 | MsG0880042557.01 | 0.842044 | 3.288664e-58 | 4.924460e-55 |
| MsG0480023115.01 | MsG0880042557.01 | 0.849810 | 2.546157e-60 | 4.885694e-57 |
| MsG0480023116.01 | MsG0880042557.01 | 0.825262 | 5.158973e-54 | 4.678977e-51 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880042557.01.T01 | MTR_8g016370 | 96.903 | 226 | 7 | 0 | 1 | 226 | 1 | 226 | 1.41e-166 | 458 |
| MsG0880042557.01.T01 | MTR_2g100060 | 48.319 | 238 | 90 | 5 | 21 | 225 | 23 | 260 | 5.06e-62 | 194 |
| MsG0880042557.01.T01 | MTR_3g104460 | 32.016 | 253 | 136 | 6 | 9 | 225 | 8 | 260 | 3.75e-41 | 141 |
| MsG0880042557.01.T01 | MTR_5g087760 | 25.556 | 180 | 106 | 3 | 45 | 196 | 52 | 231 | 3.51e-20 | 86.3 |
| MsG0880042557.01.T01 | MTR_2g012550 | 25.714 | 245 | 141 | 7 | 4 | 216 | 29 | 264 | 1.11e-15 | 74.3 |
| MsG0880042557.01.T01 | MTR_5g076170 | 24.051 | 237 | 138 | 5 | 1 | 195 | 1 | 237 | 3.61e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880042557.01.T01 | AT1G17620 | 36.226 | 265 | 128 | 9 | 1 | 225 | 1 | 264 | 3.99e-37 | 131 |
| MsG0880042557.01.T01 | AT5G11890 | 29.339 | 242 | 124 | 7 | 31 | 225 | 46 | 287 | 2.64e-23 | 95.5 |
| MsG0880042557.01.T01 | AT2G27080 | 30.256 | 195 | 106 | 8 | 31 | 196 | 43 | 236 | 1.05e-17 | 79.7 |
| MsG0880042557.01.T01 | AT2G27080 | 30.256 | 195 | 106 | 8 | 31 | 196 | 43 | 236 | 1.05e-17 | 79.7 |
| MsG0880042557.01.T01 | AT1G54540 | 33.537 | 164 | 92 | 4 | 1 | 153 | 1 | 158 | 1.68e-14 | 70.5 |
| MsG0880042557.01.T01 | AT3G11650 | 25.118 | 211 | 117 | 6 | 28 | 198 | 6 | 215 | 3.84e-14 | 69.7 |
Find 88 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCAGAGGAGGTGAGTTTA+AGG | 0.186474 | 8:-10520102 | None:intergenic |
| CTCATCCTCCTCGGCGTTGC+TGG | 0.199706 | 8:+10520025 | MsG0880042557.01.T01:CDS |
| GTTACGGTGACGGTGGGTTT+GGG | 0.243109 | 8:-10519945 | None:intergenic |
| ACCGCCATTGACGGTGGTTT+TGG | 0.254728 | 8:-10519846 | None:intergenic |
| TGTTACGGTGACGGTGGGTT+TGG | 0.287856 | 8:-10519946 | None:intergenic |
| GGTGTTGCACCATTTGTTGC+TGG | 0.350170 | 8:+10519978 | MsG0880042557.01.T01:CDS |
| CGCTTTAGTCGCCGGGAATG+AGG | 0.365127 | 8:-10519888 | None:intergenic |
| GACGGAGAAGGATGGACGTT+GGG | 0.368677 | 8:-10520074 | None:intergenic |
| TACTACGATGTTGAAAGCTT+TGG | 0.370165 | 8:+10520261 | MsG0880042557.01.T01:CDS |
| CGCCGTTAAACCCTCATTCC+CGG | 0.373613 | 8:+10519877 | MsG0880042557.01.T01:CDS |
| TGCGGTGGATGTGAGGTTTA+AGG | 0.385840 | 8:+10520450 | MsG0880042557.01.T01:CDS |
| TGGGTTTGGGGACGGTAGGT+TGG | 0.391445 | 8:-10519932 | None:intergenic |
| GGTTTGTGGTGGAAAGAGTT+AGG | 0.396994 | 8:-10520129 | None:intergenic |
| TTTGGGGACGGTAGGTTGGG+CGG | 0.402155 | 8:-10519928 | None:intergenic |
| GTCACCGTAACAACCGTAAC+TGG | 0.402280 | 8:+10519957 | MsG0880042557.01.T01:CDS |
| TTCAGAGGAGGTGAGTTTAA+GGG | 0.415535 | 8:-10520101 | None:intergenic |
| GGGTTTGGGGACGGTAGGTT+GGG | 0.418926 | 8:-10519931 | None:intergenic |
| TTGGGGACGGTAGGTTGGGC+GGG | 0.430225 | 8:-10519927 | None:intergenic |
| GAAGATGAAGATGGAGACTA+AGG | 0.432100 | 8:+10520321 | MsG0880042557.01.T01:CDS |
| GGGACGGTAGGTTGGGCGGG+TGG | 0.443464 | 8:-10519924 | None:intergenic |
| TGAGGATGAAGATGAGGATG+AGG | 0.445740 | 8:-10520006 | None:intergenic |
| CGCCGGGAATGAGGGTTTAA+CGG | 0.448169 | 8:-10519879 | None:intergenic |
| CAAGCCAAAACCACCGTCAA+TGG | 0.463207 | 8:+10519842 | MsG0880042557.01.T01:CDS |
| GTTATTCCGTCGTTTGAGCA+TGG | 0.466093 | 8:+10520229 | MsG0880042557.01.T01:CDS |
| TTACGGTGACGGTGGGTTTG+GGG | 0.473961 | 8:-10519944 | None:intergenic |
| AAGGTCTGGAAATGGACTCT+TGG | 0.474218 | 8:+10520469 | MsG0880042557.01.T01:CDS |
| ATCTTCATCCTCATCCTCCT+CGG | 0.474648 | 8:+10520016 | MsG0880042557.01.T01:CDS |
| TAGATTTGCGCTTTAGTCGC+CGG | 0.478482 | 8:-10519896 | None:intergenic |
| GGTGGCTGCACCGCCATTGA+CGG | 0.481225 | 8:-10519855 | None:intergenic |
| ATGGACGTTGGGGATGGTAG+AGG | 0.483408 | 8:-10520063 | None:intergenic |
| TGAGGTTTAAGGTCTGGAAA+TGG | 0.484863 | 8:+10520461 | MsG0880042557.01.T01:CDS |
| GGTGAGTTTAAGGGAGGTGA+CGG | 0.488150 | 8:-10520092 | None:intergenic |
| AAATGGTGCAACACCAGTTA+CGG | 0.495306 | 8:-10519970 | None:intergenic |
| CAGCAACGCCGAGGAGGATG+AGG | 0.496198 | 8:-10520024 | None:intergenic |
| ACGGTGGGTTTGGGGACGGT+AGG | 0.500514 | 8:-10519936 | None:intergenic |
| AACACCAGTTACGGTTGTTA+CGG | 0.502064 | 8:-10519961 | None:intergenic |
| TTTGGCTTGAGGGTGGATGG+TGG | 0.502570 | 8:-10519828 | None:intergenic |
| TTTAAGGGAGGTGACGGAGA+AGG | 0.504292 | 8:-10520086 | None:intergenic |
| TGGATGTGAGGTTTAAGGTC+TGG | 0.504389 | 8:+10520455 | MsG0880042557.01.T01:CDS |
| GCGACTAAAGCGCAAATCTA+CGG | 0.504894 | 8:+10519899 | MsG0880042557.01.T01:CDS |
| GAGTGTGAAGAGGAAGTCAC+TGG | 0.510730 | 8:+10520294 | MsG0880042557.01.T01:CDS |
| GAGGAGAAGCCAGCAACAAA+TGG | 0.511415 | 8:-10519987 | None:intergenic |
| GAATGAGGGTTTAACGGCGG+TGG | 0.512431 | 8:-10519873 | None:intergenic |
| AGATTTGCGCTTTAGTCGCC+GGG | 0.512436 | 8:-10519895 | None:intergenic |
| ATCTCAGTTTCTCTTCTAGC+CGG | 0.515541 | 8:+10520184 | MsG0880042557.01.T01:CDS |
| CGCCGTCGCCACTTTCTCGC+CGG | 0.516341 | 8:-10520416 | None:intergenic |
| CAATTTCGCCGGCGAGAAAG+TGG | 0.522034 | 8:+10520408 | MsG0880042557.01.T01:CDS |
| GAAGAGAAACTGAGATGGGT+TGG | 0.525295 | 8:-10520177 | None:intergenic |
| GCTTTAGTCGCCGGGAATGA+GGG | 0.530563 | 8:-10519887 | None:intergenic |
| GTCACCAACGTCGAGTTCAC+CGG | 0.537636 | 8:-10520203 | None:intergenic |
| AGAGGAGGTGAGTTTAAGGG+AGG | 0.550506 | 8:-10520098 | None:intergenic |
| GATGAAGATGGAGACTAAGG+TGG | 0.558917 | 8:+10520324 | MsG0880042557.01.T01:CDS |
| TTGAGAGAAAGAGTGTGAAG+AGG | 0.560336 | 8:+10520284 | MsG0880042557.01.T01:CDS |
| TTTGTTCCATGCTCAAACGA+CGG | 0.562750 | 8:-10520235 | None:intergenic |
| ACTGGAGTTGAAGATGAAGA+TGG | 0.562868 | 8:+10520312 | MsG0880042557.01.T01:CDS |
| AGAAGGATGGACGTTGGGGA+TGG | 0.570668 | 8:-10520069 | None:intergenic |
| TGACGGAGAAGGATGGACGT+TGG | 0.574539 | 8:-10520075 | None:intergenic |
| CGGCGAGAAAGTGGCGACGG+CGG | 0.577095 | 8:+10520417 | MsG0880042557.01.T01:CDS |
| AAGAGTTAGGTCAAATTCAG+AGG | 0.577789 | 8:-10520116 | None:intergenic |
| TACGGTTGTTACGGTGACGG+TGG | 0.580484 | 8:-10519952 | None:intergenic |
| TTTCTCGTTAGGGTTTGTGG+TGG | 0.581837 | 8:-10520140 | None:intergenic |
| CGCCGGCGAGAAAGTGGCGA+CGG | 0.585041 | 8:+10520414 | MsG0880042557.01.T01:CDS |
| GGTGACGGTGGGTTTGGGGA+CGG | 0.585401 | 8:-10519940 | None:intergenic |
| GAAGATGGAGACTAAGGTGG+AGG | 0.586406 | 8:+10520327 | MsG0880042557.01.T01:CDS |
| ACGGAGAAGGATGGACGTTG+GGG | 0.586510 | 8:-10520073 | None:intergenic |
| ACGGTTGTTACGGTGACGGT+GGG | 0.590553 | 8:-10519951 | None:intergenic |
| TGTGACGGTATCAATTTCGC+CGG | 0.593516 | 8:+10520397 | MsG0880042557.01.T01:CDS |
| GGCTGCACCGCCATTGACGG+TGG | 0.595509 | 8:-10519852 | None:intergenic |
| AGGGAGGTGACGGAGAAGGA+TGG | 0.595716 | 8:-10520082 | None:intergenic |
| GCCAAAACCACCGTCAATGG+CGG | 0.599203 | 8:+10519845 | MsG0880042557.01.T01:CDS |
| AGAAGTGTGCGGTGGATGTG+AGG | 0.600574 | 8:+10520443 | MsG0880042557.01.T01:CDS |
| GGTGAACTCGACGTTGGTGA+CGG | 0.602573 | 8:+10520205 | MsG0880042557.01.T01:CDS |
| GGAATCAATGTGCTTTGTGA+CGG | 0.612451 | 8:+10520382 | MsG0880042557.01.T01:CDS |
| CTAAGGTGGAGGCTAAGATG+TGG | 0.616499 | 8:+10520338 | MsG0880042557.01.T01:CDS |
| GGCTAGAAGAGAAACTGAGA+TGG | 0.617312 | 8:-10520182 | None:intergenic |
| GGAGGATGAGGATGAAGATG+AGG | 0.618493 | 8:-10520012 | None:intergenic |
| TAAGGTGGAGGCTAAGATGT+GGG | 0.622193 | 8:+10520339 | MsG0880042557.01.T01:CDS |
| CGGTGCCAGCAACGCCGAGG+AGG | 0.624514 | 8:-10520030 | None:intergenic |
| GCTAGAAGAGAAACTGAGAT+GGG | 0.631161 | 8:-10520181 | None:intergenic |
| AGTTAGGTCAAATTCAGAGG+AGG | 0.644891 | 8:-10520113 | None:intergenic |
| AGTTACGGTTGTTACGGTGA+CGG | 0.650043 | 8:-10519955 | None:intergenic |
| AGCACATTGATTCCAACACG+TGG | 0.665256 | 8:-10520373 | None:intergenic |
| GGCGGATGAGAAGTGTGCGG+TGG | 0.666226 | 8:+10520435 | MsG0880042557.01.T01:CDS |
| CGACGGTGCCAGCAACGCCG+AGG | 0.685847 | 8:-10520033 | None:intergenic |
| CTAGCCGGTGAACTCGACGT+TGG | 0.697976 | 8:+10520199 | MsG0880042557.01.T01:CDS |
| CGGGAATGAGGGTTTAACGG+CGG | 0.731842 | 8:-10519876 | None:intergenic |
| ATGGTAGAGGAAGTAGACGA+CGG | 0.747680 | 8:-10520050 | None:intergenic |
| GACGGCGGATGAGAAGTGTG+CGG | 0.772571 | 8:+10520432 | MsG0880042557.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATGTTATTTTCTCGTTA+GGG | - | Chr8:10520153-10520172 | None:intergenic | 20.0% |
| !!! | GAAAATGTTATTTTCTCGTT+AGG | - | Chr8:10520154-10520173 | None:intergenic | 25.0% |
| AAGAGTTAGGTCAAATTCAG+AGG | - | Chr8:10520119-10520138 | None:intergenic | 35.0% | |
| TACTACGATGTTGAAAGCTT+TGG | + | Chr8:10520261-10520280 | MsG0880042557.01.T01:CDS | 35.0% | |
| ! | TATTTTCTCGTTAGGGTTTG+TGG | - | Chr8:10520146-10520165 | None:intergenic | 35.0% |
| AAATGGTGCAACACCAGTTA+CGG | - | Chr8:10519973-10519992 | None:intergenic | 40.0% | |
| AACACCAGTTACGGTTGTTA+CGG | - | Chr8:10519964-10519983 | None:intergenic | 40.0% | |
| ACTGGAGTTGAAGATGAAGA+TGG | + | Chr8:10520312-10520331 | MsG0880042557.01.T01:CDS | 40.0% | |
| AGTTAGGTCAAATTCAGAGG+AGG | - | Chr8:10520116-10520135 | None:intergenic | 40.0% | |
| ATCTCAGTTTCTCTTCTAGC+CGG | + | Chr8:10520184-10520203 | MsG0880042557.01.T01:CDS | 40.0% | |
| ATTCAGAGGAGGTGAGTTTA+AGG | - | Chr8:10520105-10520124 | None:intergenic | 40.0% | |
| GAAGATGAAGATGGAGACTA+AGG | + | Chr8:10520321-10520340 | MsG0880042557.01.T01:CDS | 40.0% | |
| GCTAGAAGAGAAACTGAGAT+GGG | - | Chr8:10520184-10520203 | None:intergenic | 40.0% | |
| GGAATCAATGTGCTTTGTGA+CGG | + | Chr8:10520382-10520401 | MsG0880042557.01.T01:CDS | 40.0% | |
| TTCAGAGGAGGTGAGTTTAA+GGG | - | Chr8:10520104-10520123 | None:intergenic | 40.0% | |
| TTTGTTCCATGCTCAAACGA+CGG | - | Chr8:10520238-10520257 | None:intergenic | 40.0% | |
| ! | TGAGGTTTAAGGTCTGGAAA+TGG | + | Chr8:10520461-10520480 | MsG0880042557.01.T01:CDS | 40.0% |
| ! | TTGAGAGAAAGAGTGTGAAG+AGG | + | Chr8:10520284-10520303 | MsG0880042557.01.T01:CDS | 40.0% |
| AGTTACGGTTGTTACGGTGA+CGG | - | Chr8:10519958-10519977 | None:intergenic | 45.0% | |
| ATCTTCATCCTCATCCTCCT+CGG | + | Chr8:10520016-10520035 | MsG0880042557.01.T01:CDS | 45.0% | |
| ATGGTAGAGGAAGTAGACGA+CGG | - | Chr8:10520053-10520072 | None:intergenic | 45.0% | |
| GAAGAGAAACTGAGATGGGT+TGG | - | Chr8:10520180-10520199 | None:intergenic | 45.0% | |
| GATGAAGATGGAGACTAAGG+TGG | + | Chr8:10520324-10520343 | MsG0880042557.01.T01:CDS | 45.0% | |
| GCGACTAAAGCGCAAATCTA+CGG | + | Chr8:10519899-10519918 | MsG0880042557.01.T01:CDS | 45.0% | |
| GGCTAGAAGAGAAACTGAGA+TGG | - | Chr8:10520185-10520204 | None:intergenic | 45.0% | |
| GTTATTCCGTCGTTTGAGCA+TGG | + | Chr8:10520229-10520248 | MsG0880042557.01.T01:CDS | 45.0% | |
| TAAGGTGGAGGCTAAGATGT+GGG | + | Chr8:10520339-10520358 | MsG0880042557.01.T01:CDS | 45.0% | |
| TAGATTTGCGCTTTAGTCGC+CGG | - | Chr8:10519899-10519918 | None:intergenic | 45.0% | |
| TGAGGATGAAGATGAGGATG+AGG | - | Chr8:10520009-10520028 | None:intergenic | 45.0% | |
| TGTGACGGTATCAATTTCGC+CGG | + | Chr8:10520397-10520416 | MsG0880042557.01.T01:CDS | 45.0% | |
| TTTCTCGTTAGGGTTTGTGG+TGG | - | Chr8:10520143-10520162 | None:intergenic | 45.0% | |
| ! | AAGGTCTGGAAATGGACTCT+TGG | + | Chr8:10520469-10520488 | MsG0880042557.01.T01:CDS | 45.0% |
| ! | GGTTTGTGGTGGAAAGAGTT+AGG | - | Chr8:10520132-10520151 | None:intergenic | 45.0% |
| ! | TGGATGTGAGGTTTAAGGTC+TGG | + | Chr8:10520455-10520474 | MsG0880042557.01.T01:CDS | 45.0% |
| !! | AGCACATTGATTCCAACACG+TGG | - | Chr8:10520376-10520395 | None:intergenic | 45.0% |
| !! | GTTTTCAAGACTCCACGTGT+TGG | + | Chr8:10520361-10520380 | MsG0880042557.01.T01:CDS | 45.0% |
| AGAGGAGGTGAGTTTAAGGG+AGG | - | Chr8:10520101-10520120 | None:intergenic | 50.0% | |
| AGATTTGCGCTTTAGTCGCC+GGG | - | Chr8:10519898-10519917 | None:intergenic | 50.0% | |
| CAAGCCAAAACCACCGTCAA+TGG | + | Chr8:10519842-10519861 | MsG0880042557.01.T01:CDS | 50.0% | |
| CTAAGGTGGAGGCTAAGATG+TGG | + | Chr8:10520338-10520357 | MsG0880042557.01.T01:CDS | 50.0% | |
| GAAGATGGAGACTAAGGTGG+AGG | + | Chr8:10520327-10520346 | MsG0880042557.01.T01:CDS | 50.0% | |
| GAGGAGAAGCCAGCAACAAA+TGG | - | Chr8:10519990-10520009 | None:intergenic | 50.0% | |
| GAGTGTGAAGAGGAAGTCAC+TGG | + | Chr8:10520294-10520313 | MsG0880042557.01.T01:CDS | 50.0% | |
| GGAGGATGAGGATGAAGATG+AGG | - | Chr8:10520015-10520034 | None:intergenic | 50.0% | |
| GGTGAGTTTAAGGGAGGTGA+CGG | - | Chr8:10520095-10520114 | None:intergenic | 50.0% | |
| GTCACCGTAACAACCGTAAC+TGG | + | Chr8:10519957-10519976 | MsG0880042557.01.T01:CDS | 50.0% | |
| TGCGGTGGATGTGAGGTTTA+AGG | + | Chr8:10520450-10520469 | MsG0880042557.01.T01:CDS | 50.0% | |
| ! | GGTGTTGCACCATTTGTTGC+TGG | + | Chr8:10519978-10519997 | MsG0880042557.01.T01:CDS | 50.0% |
| !! | TTTAAGGGAGGTGACGGAGA+AGG | - | Chr8:10520089-10520108 | None:intergenic | 50.0% |
| !!! | TGACGGTGGTTTTGGCTTGA+GGG | - | Chr8:10519841-10519860 | None:intergenic | 50.0% |
| !!! | TTGACGGTGGTTTTGGCTTG+AGG | - | Chr8:10519842-10519861 | None:intergenic | 50.0% |
| ACGGAGAAGGATGGACGTTG+GGG | - | Chr8:10520076-10520095 | None:intergenic | 55.0% | |
| AGAAGGATGGACGTTGGGGA+TGG | - | Chr8:10520072-10520091 | None:intergenic | 55.0% | |
| ATGGACGTTGGGGATGGTAG+AGG | - | Chr8:10520066-10520085 | None:intergenic | 55.0% | |
| CAATTTCGCCGGCGAGAAAG+TGG | + | Chr8:10520408-10520427 | MsG0880042557.01.T01:CDS | 55.0% | |
| CGCCGGGAATGAGGGTTTAA+CGG | - | Chr8:10519882-10519901 | None:intergenic | 55.0% | |
| CGCCGTTAAACCCTCATTCC+CGG | + | Chr8:10519877-10519896 | MsG0880042557.01.T01:CDS | 55.0% | |
| CGGGAATGAGGGTTTAACGG+CGG | - | Chr8:10519879-10519898 | None:intergenic | 55.0% | |
| GAATGAGGGTTTAACGGCGG+TGG | - | Chr8:10519876-10519895 | None:intergenic | 55.0% | |
| GACGGAGAAGGATGGACGTT+GGG | - | Chr8:10520077-10520096 | None:intergenic | 55.0% | |
| GCCAAAACCACCGTCAATGG+CGG | + | Chr8:10519845-10519864 | MsG0880042557.01.T01:CDS | 55.0% | |
| GCTTTAGTCGCCGGGAATGA+GGG | - | Chr8:10519890-10519909 | None:intergenic | 55.0% | |
| GTCACCAACGTCGAGTTCAC+CGG | - | Chr8:10520206-10520225 | None:intergenic | 55.0% | |
| TGACGGAGAAGGATGGACGT+TGG | - | Chr8:10520078-10520097 | None:intergenic | 55.0% | |
| ! | ACCGCCATTGACGGTGGTTT+TGG | - | Chr8:10519849-10519868 | None:intergenic | 55.0% |
| ! | ACGGTTGTTACGGTGACGGT+GGG | - | Chr8:10519954-10519973 | None:intergenic | 55.0% |
| ! | AGAAGTGTGCGGTGGATGTG+AGG | + | Chr8:10520443-10520462 | MsG0880042557.01.T01:CDS | 55.0% |
| ! | GGTGAACTCGACGTTGGTGA+CGG | + | Chr8:10520205-10520224 | MsG0880042557.01.T01:CDS | 55.0% |
| ! | GTTACGGTGACGGTGGGTTT+GGG | - | Chr8:10519948-10519967 | None:intergenic | 55.0% |
| ! | TACGGTTGTTACGGTGACGG+TGG | - | Chr8:10519955-10519974 | None:intergenic | 55.0% |
| ! | TGTTACGGTGACGGTGGGTT+TGG | - | Chr8:10519949-10519968 | None:intergenic | 55.0% |
| ! | TTACGGTGACGGTGGGTTTG+GGG | - | Chr8:10519947-10519966 | None:intergenic | 55.0% |
| !! | TTTGGCTTGAGGGTGGATGG+TGG | - | Chr8:10519831-10519850 | None:intergenic | 55.0% |
| !!! | GGTTTTGGCTTGAGGGTGGA+TGG | - | Chr8:10519834-10519853 | None:intergenic | 55.0% |
| CGCTTTAGTCGCCGGGAATG+AGG | - | Chr8:10519891-10519910 | None:intergenic | 60.0% | |
| CTAGCCGGTGAACTCGACGT+TGG | + | Chr8:10520199-10520218 | MsG0880042557.01.T01:CDS | 60.0% | |
| GGGTTTGGGGACGGTAGGTT+GGG | - | Chr8:10519934-10519953 | None:intergenic | 60.0% | |
| TGGGTTTGGGGACGGTAGGT+TGG | - | Chr8:10519935-10519954 | None:intergenic | 60.0% | |
| ! | GACGGCGGATGAGAAGTGTG+CGG | + | Chr8:10520432-10520451 | MsG0880042557.01.T01:CDS | 60.0% |
| ! | TTTGGGGACGGTAGGTTGGG+CGG | - | Chr8:10519931-10519950 | None:intergenic | 60.0% |
| !! | AGGGAGGTGACGGAGAAGGA+TGG | - | Chr8:10520085-10520104 | None:intergenic | 60.0% |
| !!! | CGGTGGTTTTGGCTTGAGGG+TGG | - | Chr8:10519838-10519857 | None:intergenic | 60.0% |
| CAGCAACGCCGAGGAGGATG+AGG | - | Chr8:10520027-10520046 | None:intergenic | 65.0% | |
| CTCATCCTCCTCGGCGTTGC+TGG | + | Chr8:10520025-10520044 | MsG0880042557.01.T01:CDS | 65.0% | |
| GGTGGCTGCACCGCCATTGA+CGG | - | Chr8:10519858-10519877 | None:intergenic | 65.0% | |
| ! | ACGGTGGGTTTGGGGACGGT+AGG | - | Chr8:10519939-10519958 | None:intergenic | 65.0% |
| ! | GGCGGATGAGAAGTGTGCGG+TGG | + | Chr8:10520435-10520454 | MsG0880042557.01.T01:CDS | 65.0% |
| ! | GGTGACGGTGGGTTTGGGGA+CGG | - | Chr8:10519943-10519962 | None:intergenic | 65.0% |
| ! | TTGGGGACGGTAGGTTGGGC+GGG | - | Chr8:10519930-10519949 | None:intergenic | 65.0% |
| CGCCGGCGAGAAAGTGGCGA+CGG | + | Chr8:10520414-10520433 | MsG0880042557.01.T01:CDS | 70.0% | |
| CGGCGAGAAAGTGGCGACGG+CGG | + | Chr8:10520417-10520436 | MsG0880042557.01.T01:CDS | 70.0% | |
| GGCTGCACCGCCATTGACGG+TGG | - | Chr8:10519855-10519874 | None:intergenic | 70.0% | |
| ! | CGCCGTCGCCACTTTCTCGC+CGG | - | Chr8:10520419-10520438 | None:intergenic | 70.0% |
| ! | CGACGGTGCCAGCAACGCCG+AGG | - | Chr8:10520036-10520055 | None:intergenic | 75.0% |
| ! | CGGTGCCAGCAACGCCGAGG+AGG | - | Chr8:10520033-10520052 | None:intergenic | 75.0% |
| ! | GGGACGGTAGGTTGGGCGGG+TGG | - | Chr8:10519927-10519946 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 10519815 | 10520495 | 10519815 | ID=MsG0880042557.01;Name=MsG0880042557.01 |
| Chr8 | mRNA | 10519815 | 10520495 | 10519815 | ID=MsG0880042557.01.T01;Parent=MsG0880042557.01;Name=MsG0880042557.01.T01;_AED=0.46;_eAED=0.46;_QI=0|-1|0|1|-1|1|1|0|226 |
| Chr8 | exon | 10519815 | 10520495 | 10519815 | ID=MsG0880042557.01.T01:exon:4361;Parent=MsG0880042557.01.T01 |
| Chr8 | CDS | 10519815 | 10520495 | 10519815 | ID=MsG0880042557.01.T01:cds;Parent=MsG0880042557.01.T01 |
| Gene Sequence |
| Protein sequence |
