Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020818.01.T01 | PNX73545.1 | 88.276 | 290 | 34 | 0 | 1 | 290 | 1 | 290 | 0 | 514 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020818.01.T01 | Q8LEJ6 | 47.305 | 167 | 87 | 1 | 66 | 231 | 29 | 195 | 2.45E-46 | 159 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020818.01.T01 | A0A2K3L4T8 | 88.276 | 290 | 34 | 0 | 1 | 290 | 1 | 290 | 0.0 | 514 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0280010891.01 | MsG0480020818.01 | 0.815230 | 1.028223e-51 | 7.048513e-49 |
| MsG0280010892.01 | MsG0480020818.01 | 0.853977 | 1.671910e-61 | 3.677970e-58 |
| MsG0280010893.01 | MsG0480020818.01 | 0.823156 | 1.612079e-53 | 1.377042e-50 |
| MsG0480020552.01 | MsG0480020818.01 | 0.948026 | 2.130054e-106 | 3.867706e-101 |
| MsG0480020815.01 | MsG0480020818.01 | 0.888063 | 8.231227e-73 | 6.278896e-69 |
| MsG0480020816.01 | MsG0480020818.01 | 0.891486 | 3.803558e-74 | 3.341600e-70 |
| MsG0480020817.01 | MsG0480020818.01 | 0.922146 | 1.436119e-88 | 5.341175e-84 |
| MsG0480020818.01 | MsG0480023113.01 | 0.873498 | 1.403644e-67 | 6.105782e-64 |
| MsG0480020818.01 | MsG0480023114.01 | 0.904232 | 1.521019e-79 | 2.330998e-75 |
| MsG0480020818.01 | MsG0480023115.01 | 0.923468 | 2.553448e-89 | 1.023710e-84 |
| MsG0480020818.01 | MsG0480023116.01 | 0.945146 | 5.266787e-104 | 7.898757e-99 |
| MsG0480020818.01 | MsG0880042557.01 | 0.834946 | 2.233488e-56 | 2.691335e-53 |
| MsG0480020818.01 | MsG0880044994.01 | 0.872159 | 3.939954e-67 | 1.631564e-63 |
| MsG0480020818.01 | MsG0880045339.01 | 0.926054 | 7.932150e-91 | 3.662384e-86 |
| MsG0480020818.01 | MsG0880047773.01 | 0.883656 | 3.729855e-71 | 2.386434e-67 |
| MsG0280006934.01 | MsG0480020818.01 | 0.885280 | 9.313250e-72 | 6.353960e-68 |
| MsG0280009327.01 | MsG0480020818.01 | 0.825643 | 4.192144e-54 | 3.843452e-51 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020818.01.T01 | MTR_4g059840 | 92.042 | 289 | 23 | 0 | 1 | 289 | 1 | 289 | 0.0 | 500 |
| MsG0480020818.01.T01 | MTR_4g059790 | 94.502 | 291 | 16 | 0 | 1 | 291 | 1 | 291 | 7.38e-175 | 484 |
| MsG0480020818.01.T01 | MTR_4g053380 | 80.277 | 289 | 51 | 4 | 1 | 283 | 2 | 290 | 2.02e-145 | 410 |
| MsG0480020818.01.T01 | MTR_2g093970 | 57.394 | 284 | 106 | 7 | 9 | 283 | 8 | 285 | 1.18e-95 | 284 |
| MsG0480020818.01.T01 | MTR_2g017970 | 55.455 | 220 | 88 | 3 | 73 | 291 | 68 | 278 | 1.68e-74 | 229 |
| MsG0480020818.01.T01 | MTR_8g087450 | 56.667 | 210 | 78 | 3 | 22 | 220 | 17 | 224 | 1.95e-74 | 230 |
| MsG0480020818.01.T01 | MTR_2g017960 | 58.000 | 200 | 75 | 2 | 73 | 272 | 68 | 258 | 2.28e-72 | 224 |
| MsG0480020818.01.T01 | MTR_2g093980 | 45.051 | 293 | 140 | 6 | 5 | 289 | 3 | 282 | 2.06e-71 | 222 |
| MsG0480020818.01.T01 | MTR_2g017950 | 44.089 | 313 | 133 | 11 | 1 | 289 | 1 | 295 | 2.27e-69 | 217 |
| MsG0480020818.01.T01 | MTR_8g087460 | 51.883 | 239 | 89 | 8 | 5 | 220 | 7 | 242 | 1.32e-66 | 211 |
| MsG0480020818.01.T01 | MTR_4g059780 | 55.838 | 197 | 78 | 3 | 30 | 222 | 48 | 239 | 1.80e-66 | 210 |
| MsG0480020818.01.T01 | MTR_8g087470 | 51.883 | 239 | 89 | 8 | 5 | 220 | 7 | 242 | 1.05e-65 | 208 |
| MsG0480020818.01.T01 | MTR_4g059720 | 50.698 | 215 | 74 | 5 | 11 | 225 | 10 | 192 | 1.91e-58 | 187 |
| MsG0480020818.01.T01 | MTR_2g093990 | 44.811 | 212 | 111 | 4 | 73 | 283 | 41 | 247 | 4.10e-51 | 169 |
| MsG0480020818.01.T01 | MTR_7g101080 | 44.937 | 158 | 85 | 2 | 65 | 221 | 32 | 188 | 7.64e-39 | 137 |
| MsG0480020818.01.T01 | MTR_2g090765 | 39.394 | 198 | 112 | 2 | 66 | 256 | 31 | 227 | 1.11e-30 | 115 |
| MsG0480020818.01.T01 | MTR_7g075453 | 32.222 | 180 | 117 | 2 | 66 | 245 | 177 | 351 | 4.57e-19 | 87.0 |
| MsG0480020818.01.T01 | MTR_5g098060 | 29.778 | 225 | 142 | 7 | 72 | 291 | 47 | 260 | 1.78e-16 | 77.8 |
| MsG0480020818.01.T01 | MTR_5g098420 | 29.949 | 197 | 123 | 7 | 40 | 235 | 167 | 349 | 1.84e-13 | 70.5 |
| MsG0480020818.01.T01 | MTR_2g437700 | 30.519 | 154 | 100 | 4 | 72 | 221 | 194 | 344 | 8.30e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020818.01.T01 | AT5G03170 | 47.305 | 167 | 87 | 1 | 66 | 231 | 29 | 195 | 2.50e-47 | 159 |
| MsG0480020818.01.T01 | AT5G60490 | 54.000 | 150 | 67 | 2 | 73 | 221 | 39 | 187 | 2.60e-47 | 159 |
| MsG0480020818.01.T01 | AT5G44130 | 36.816 | 201 | 113 | 6 | 72 | 268 | 35 | 225 | 1.41e-28 | 110 |
| MsG0480020818.01.T01 | AT2G20520 | 35.714 | 238 | 131 | 7 | 52 | 286 | 19 | 237 | 3.12e-28 | 109 |
| MsG0480020818.01.T01 | AT1G03870 | 33.636 | 220 | 134 | 6 | 72 | 289 | 38 | 247 | 5.52e-26 | 103 |
| MsG0480020818.01.T01 | AT3G60900 | 29.121 | 182 | 124 | 2 | 66 | 247 | 183 | 359 | 2.96e-16 | 79.0 |
| MsG0480020818.01.T01 | AT3G46550 | 31.183 | 186 | 114 | 7 | 58 | 233 | 193 | 374 | 3.40e-14 | 72.8 |
| MsG0480020818.01.T01 | AT2G04780 | 30.263 | 152 | 100 | 3 | 72 | 221 | 45 | 192 | 5.75e-13 | 67.8 |
| MsG0480020818.01.T01 | AT2G04780 | 30.263 | 152 | 100 | 3 | 72 | 221 | 45 | 192 | 5.75e-13 | 67.8 |
Find 84 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACATTCAGTTCCACCTTTC+CGG | 0.262448 | 4:+48834469 | None:intergenic |
| TCAACAGTGCCTGCGGTGTC+AGG | 0.281291 | 4:+48834785 | None:intergenic |
| GCTGTATCGGTTGAAGGTTC+TGG | 0.299723 | 4:+48834278 | None:intergenic |
| ATCTGATGATGTATCTTTAT+CGG | 0.306273 | 4:+48834241 | None:intergenic |
| ACCGGGGAAGGCACCATCTT+TGG | 0.311761 | 4:-48834303 | MsG0480020818.01.T01:CDS |
| GTAAATAGCAAGACGTTTAT+CGG | 0.328237 | 4:+48834376 | None:intergenic |
| GGAGCTGCAGCTGGGGTGAT+TGG | 0.335710 | 4:+48834854 | None:intergenic |
| CCAACTCAATTCACAACTAT+TGG | 0.336498 | 4:-48834687 | MsG0480020818.01.T01:CDS |
| CGTCTTGCTATTTACAAAGT+TGG | 0.358413 | 4:-48834368 | MsG0480020818.01.T01:CDS |
| ACATTCAGTTCCACCTTTCC+GGG | 0.360231 | 4:+48834470 | None:intergenic |
| TAGTGGTGGTTGAATACAAT+AGG | 0.367638 | 4:+48834930 | None:intergenic |
| AATGAAGGTACCAATGGTTT+AGG | 0.368336 | 4:+48834833 | None:intergenic |
| GCCTTTGCTGTATCGGTTGA+AGG | 0.385363 | 4:+48834272 | None:intergenic |
| TGGCAAAGTGCTTCTTCCTA+TGG | 0.388422 | 4:-48834348 | MsG0480020818.01.T01:CDS |
| GATGTATCTTTATCGGGTTT+AGG | 0.388759 | 4:+48834248 | None:intergenic |
| CACCTTTCCGGGTTTAGCTC+CGG | 0.406609 | 4:+48834481 | None:intergenic |
| ACTTGGAGTTGTATTAGCTT+TGG | 0.415071 | 4:-48834147 | MsG0480020818.01.T01:CDS |
| TCTGATGATGTATCTTTATC+GGG | 0.424899 | 4:+48834242 | None:intergenic |
| TTTAGGTGCCTTTGCTGTAT+CGG | 0.426276 | 4:+48834265 | None:intergenic |
| AATCCAACTGAAGACAAATC+TGG | 0.437545 | 4:-48834203 | MsG0480020818.01.T01:CDS |
| GCCCATCGGAAAGAGAGTTT+AGG | 0.440037 | 4:+48834594 | None:intergenic |
| TGTATGCCTTCGCCTTTCTC+AGG | 0.442653 | 4:+48834750 | None:intergenic |
| AATGGTTTAGGAGCTGCAGC+TGG | 0.446421 | 4:+48834845 | None:intergenic |
| CCGGATGACAGTGCCTTCTC+AGG | 0.460688 | 4:-48834632 | MsG0480020818.01.T01:CDS |
| GAGCCAGATTTGTCTTCAGT+TGG | 0.465037 | 4:+48834200 | None:intergenic |
| GTGATTGGAGCTGGTAGTGT+AGG | 0.468538 | 4:+48834869 | None:intergenic |
| TGGAGTTGTATTAGCTTTGG+CGG | 0.475137 | 4:-48834144 | MsG0480020818.01.T01:CDS |
| GGCTCTATGAAGATTGTGTA+TGG | 0.477473 | 4:-48834182 | MsG0480020818.01.T01:CDS |
| CCTGAGAAGGCACTGTCATC+CGG | 0.484418 | 4:+48834632 | None:intergenic |
| CGTTGCTAAGGCACCGGGGA+AGG | 0.485444 | 4:-48834315 | MsG0480020818.01.T01:CDS |
| GCTGGTAGTGTAGGTTGTAC+AGG | 0.487178 | 4:+48834878 | None:intergenic |
| GCCAAAGATGGTGCCTTCCC+CGG | 0.494928 | 4:+48834302 | None:intergenic |
| AGTGGTGGTTGAATACAATA+GGG | 0.497408 | 4:+48834931 | None:intergenic |
| GCTCCGGCCAGCGTTCTCAC+AGG | 0.497948 | 4:+48834497 | None:intergenic |
| CCAATAGTTGTGAATTGAGT+TGG | 0.499317 | 4:+48834687 | None:intergenic |
| TTCCTAAACTCTCTTTCCGA+TGG | 0.502985 | 4:-48834596 | MsG0480020818.01.T01:CDS |
| CAACAGTGCCTGCGGTGTCA+GGG | 0.508035 | 4:+48834786 | None:intergenic |
| GGTTGTACAGGAGCAGTAGC+AGG | 0.514138 | 4:+48834890 | None:intergenic |
| GCAGCTGGGGTGATTGGAGC+TGG | 0.517181 | 4:+48834860 | None:intergenic |
| GGAAGTGTGAACATATCGAC+AGG | 0.521296 | 4:-48834434 | MsG0480020818.01.T01:CDS |
| GAAGTGAACACGACAATCAA+TGG | 0.521491 | 4:-48834410 | MsG0480020818.01.T01:CDS |
| ATGGTTTAGGAGCTGCAGCT+GGG | 0.530979 | 4:+48834846 | None:intergenic |
| CTAGGTGACTCTGGTAATGA+AGG | 0.531327 | 4:+48834818 | None:intergenic |
| AGTGCCTGCGGTGTCAGGGG+TGG | 0.531927 | 4:+48834790 | None:intergenic |
| AACCCTGTGAGAACGCTGGC+CGG | 0.532314 | 4:-48834500 | MsG0480020818.01.T01:CDS |
| AGCTGCAGCTCCTAAACCAT+TGG | 0.535597 | 4:-48834843 | MsG0480020818.01.T01:CDS |
| GAAGGTTCTGGTGCCAAAGA+TGG | 0.536850 | 4:+48834290 | None:intergenic |
| GCCTTCTCAGGACTCAAGGC+GGG | 0.537555 | 4:-48834620 | MsG0480020818.01.T01:CDS |
| CTCCGGCCAGCGTTCTCACA+GGG | 0.540068 | 4:+48834498 | None:intergenic |
| GGCCAGCGTTCTCACAGGGT+TGG | 0.540193 | 4:+48834502 | None:intergenic |
| TGGATTAACAATTCTTGCAC+CGG | 0.540856 | 4:-48834651 | MsG0480020818.01.T01:CDS |
| TGAAGATTGTGTATGGAAAG+TGG | 0.544324 | 4:-48834175 | MsG0480020818.01.T01:CDS |
| TCCTAAACTCTCTTTCCGAT+GGG | 0.544697 | 4:-48834595 | MsG0480020818.01.T01:CDS |
| GTGGAATCACTAGGTGACTC+TGG | 0.548332 | 4:+48834809 | None:intergenic |
| GAACTGAATGTTGTGAGTTA+CGG | 0.560113 | 4:-48834458 | MsG0480020818.01.T01:CDS |
| CATCGTCGGAATCCTGAGAA+AGG | 0.569747 | 4:-48834762 | MsG0480020818.01.T01:CDS |
| GCAACGGAAAAGAAATCCAT+AGG | 0.570178 | 4:+48834332 | None:intergenic |
| ACGCTGGCCGGAGCTAAACC+CGG | 0.577289 | 4:-48834488 | MsG0480020818.01.T01:CDS |
| GATTCCACCCCTGACACCGC+AGG | 0.578533 | 4:-48834794 | MsG0480020818.01.T01:CDS |
| TACATCATCAGATTCGTCGC+AGG | 0.582113 | 4:-48834231 | MsG0480020818.01.T01:CDS |
| GTGTCAGGGGTGGAATCACT+AGG | 0.582776 | 4:+48834800 | None:intergenic |
| TCTGGTAATGAAGGTACCAA+TGG | 0.585762 | 4:+48834827 | None:intergenic |
| AACAGTGCCTGCGGTGTCAG+GGG | 0.587591 | 4:+48834787 | None:intergenic |
| CTTCCCCGGTGCCTTAGCAA+CGG | 0.588968 | 4:+48834316 | None:intergenic |
| TATGGAAAGTGGATGTCACT+TGG | 0.591338 | 4:-48834164 | MsG0480020818.01.T01:CDS |
| GGCCGGAGCTAAACCCGGAA+AGG | 0.591999 | 4:-48834483 | MsG0480020818.01.T01:CDS |
| AACTAGTATTGTAACTGAGA+AGG | 0.595775 | 4:+48834955 | None:intergenic |
| CAGTGCCTTCTCAGGACTCA+AGG | 0.598053 | 4:-48834624 | MsG0480020818.01.T01:CDS |
| TGGTTTAGGAGCTGCAGCTG+GGG | 0.604848 | 4:+48834847 | None:intergenic |
| TCCCGCCTTGAGTCCTGAGA+AGG | 0.611208 | 4:+48834619 | None:intergenic |
| ACCTTCAACCGATACAGCAA+AGG | 0.611839 | 4:-48834273 | MsG0480020818.01.T01:CDS |
| GACGATGTCAACAGTGCCTG+CGG | 0.612466 | 4:+48834778 | None:intergenic |
| CGGAATCCTGAGAAAGGCGA+AGG | 0.622312 | 4:-48834756 | MsG0480020818.01.T01:CDS |
| CGGAGCTAAACCCGGAAAGG+TGG | 0.630972 | 4:-48834480 | MsG0480020818.01.T01:CDS |
| GCAGGCACTGTTGACATCGT+CGG | 0.636937 | 4:-48834776 | MsG0480020818.01.T01:CDS |
| AACCAACCCTGTGAGAACGC+TGG | 0.641203 | 4:-48834504 | MsG0480020818.01.T01:CDS |
| ATACATAGTCTGAAATAACA+TGG | 0.642288 | 4:+48834549 | None:intergenic |
| TAATTCAGATAAAGTAGTGG+TGG | 0.645296 | 4:+48834916 | None:intergenic |
| TGCCTTCTCAGGACTCAAGG+CGG | 0.646819 | 4:-48834621 | MsG0480020818.01.T01:CDS |
| CTGAATGTTGTGAGTTACGG+TGG | 0.651196 | 4:-48834455 | MsG0480020818.01.T01:CDS |
| TGATAATTCAGATAAAGTAG+TGG | 0.674305 | 4:+48834913 | None:intergenic |
| GAAGTGTGAACATATCGACA+GGG | 0.702439 | 4:-48834433 | MsG0480020818.01.T01:CDS |
| AAGTGTGAACATATCGACAG+GGG | 0.748121 | 4:-48834432 | MsG0480020818.01.T01:CDS |
| TTTCCGTTGCTAAGGCACCG+GGG | 0.751333 | 4:-48834319 | MsG0480020818.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TGATAATTCAGATAAAGTAG+TGG | + | Chr4:48834197-48834216 | None:intergenic | 25.0% |
| !! | ATACATAGTCTGAAATAACA+TGG | + | Chr4:48834561-48834580 | None:intergenic | 25.0% |
| !! | ATCTGATGATGTATCTTTAT+CGG | + | Chr4:48834869-48834888 | None:intergenic | 25.0% |
| AACTAGTATTGTAACTGAGA+AGG | + | Chr4:48834155-48834174 | None:intergenic | 30.0% | |
| GTAAATAGCAAGACGTTTAT+CGG | + | Chr4:48834734-48834753 | None:intergenic | 30.0% | |
| TAATTCAGATAAAGTAGTGG+TGG | + | Chr4:48834194-48834213 | None:intergenic | 30.0% | |
| ! | TCTGATGATGTATCTTTATC+GGG | + | Chr4:48834868-48834887 | None:intergenic | 30.0% |
| AATCCAACTGAAGACAAATC+TGG | - | Chr4:48834904-48834923 | MsG0480020818.01.T01:CDS | 35.0% | |
| AGTGGTGGTTGAATACAATA+GGG | + | Chr4:48834179-48834198 | None:intergenic | 35.0% | |
| CAACTATTGGCAACAAAAAC+AGG | - | Chr4:48834433-48834452 | MsG0480020818.01.T01:CDS | 35.0% | |
| CCAACTCAATTCACAACTAT+TGG | - | Chr4:48834420-48834439 | MsG0480020818.01.T01:CDS | 35.0% | |
| CCAATAGTTGTGAATTGAGT+TGG | + | Chr4:48834423-48834442 | None:intergenic | 35.0% | |
| GAACTGAATGTTGTGAGTTA+CGG | - | Chr4:48834649-48834668 | MsG0480020818.01.T01:CDS | 35.0% | |
| GATGTATCTTTATCGGGTTT+AGG | + | Chr4:48834862-48834881 | None:intergenic | 35.0% | |
| TAGTGGTGGTTGAATACAAT+AGG | + | Chr4:48834180-48834199 | None:intergenic | 35.0% | |
| TGAAGATTGTGTATGGAAAG+TGG | - | Chr4:48834932-48834951 | MsG0480020818.01.T01:CDS | 35.0% | |
| TGGATTAACAATTCTTGCAC+CGG | - | Chr4:48834456-48834475 | MsG0480020818.01.T01:CDS | 35.0% | |
| ! | ACTTGGAGTTGTATTAGCTT+TGG | - | Chr4:48834960-48834979 | MsG0480020818.01.T01:CDS | 35.0% |
| !! | AATGAAGGTACCAATGGTTT+AGG | + | Chr4:48834277-48834296 | None:intergenic | 35.0% |
| !! | CGTCTTGCTATTTACAAAGT+TGG | - | Chr4:48834739-48834758 | MsG0480020818.01.T01:CDS | 35.0% |
| AACATTCAGTTCCACCTTTC+CGG | + | Chr4:48834641-48834660 | None:intergenic | 40.0% | |
| AAGTGTGAACATATCGACAG+GGG | - | Chr4:48834675-48834694 | MsG0480020818.01.T01:CDS | 40.0% | |
| CTATTGGCAACAAAAACAGG+TGG | - | Chr4:48834436-48834455 | MsG0480020818.01.T01:CDS | 40.0% | |
| GAAGTGAACACGACAATCAA+TGG | - | Chr4:48834697-48834716 | MsG0480020818.01.T01:CDS | 40.0% | |
| GAAGTGTGAACATATCGACA+GGG | - | Chr4:48834674-48834693 | MsG0480020818.01.T01:CDS | 40.0% | |
| GCAACGGAAAAGAAATCCAT+AGG | + | Chr4:48834778-48834797 | None:intergenic | 40.0% | |
| GGCTCTATGAAGATTGTGTA+TGG | - | Chr4:48834925-48834944 | MsG0480020818.01.T01:CDS | 40.0% | |
| TATGGAAAGTGGATGTCACT+TGG | - | Chr4:48834943-48834962 | MsG0480020818.01.T01:CDS | 40.0% | |
| TCCTAAACTCTCTTTCCGAT+GGG | - | Chr4:48834512-48834531 | MsG0480020818.01.T01:CDS | 40.0% | |
| TTCCTAAACTCTCTTTCCGA+TGG | - | Chr4:48834511-48834530 | MsG0480020818.01.T01:CDS | 40.0% | |
| ! | GGATTTCTTTTCCGTTGCTA+AGG | - | Chr4:48834780-48834799 | MsG0480020818.01.T01:CDS | 40.0% |
| ! | TTTAGGTGCCTTTGCTGTAT+CGG | + | Chr4:48834845-48834864 | None:intergenic | 40.0% |
| !! | TCTGGTAATGAAGGTACCAA+TGG | + | Chr4:48834283-48834302 | None:intergenic | 40.0% |
| !! | TGGAGTTGTATTAGCTTTGG+CGG | - | Chr4:48834963-48834982 | MsG0480020818.01.T01:CDS | 40.0% |
| ACATTCAGTTCCACCTTTCC+GGG | + | Chr4:48834640-48834659 | None:intergenic | 45.0% | |
| ACCTTCAACCGATACAGCAA+AGG | - | Chr4:48834834-48834853 | MsG0480020818.01.T01:CDS | 45.0% | |
| CTGAATGTTGTGAGTTACGG+TGG | - | Chr4:48834652-48834671 | MsG0480020818.01.T01:CDS | 45.0% | |
| GAGCCAGATTTGTCTTCAGT+TGG | + | Chr4:48834910-48834929 | None:intergenic | 45.0% | |
| TACATCATCAGATTCGTCGC+AGG | - | Chr4:48834876-48834895 | MsG0480020818.01.T01:CDS | 45.0% | |
| ! | CTAGGTGACTCTGGTAATGA+AGG | + | Chr4:48834292-48834311 | None:intergenic | 45.0% |
| ! | GGAAGTGTGAACATATCGAC+AGG | - | Chr4:48834673-48834692 | MsG0480020818.01.T01:CDS | 45.0% |
| ! | TGGCAAAGTGCTTCTTCCTA+TGG | - | Chr4:48834759-48834778 | MsG0480020818.01.T01:CDS | 45.0% |
| AATGGTTTAGGAGCTGCAGC+TGG | + | Chr4:48834265-48834284 | None:intergenic | 50.0% | |
| AGCTGCAGCTCCTAAACCAT+TGG | - | Chr4:48834264-48834283 | MsG0480020818.01.T01:CDS | 50.0% | |
| ATGGTTTAGGAGCTGCAGCT+GGG | + | Chr4:48834264-48834283 | None:intergenic | 50.0% | |
| CATCGTCGGAATCCTGAGAA+AGG | - | Chr4:48834345-48834364 | MsG0480020818.01.T01:CDS | 50.0% | |
| GCCCATCGGAAAGAGAGTTT+AGG | + | Chr4:48834516-48834535 | None:intergenic | 50.0% | |
| GTGGAATCACTAGGTGACTC+TGG | + | Chr4:48834301-48834320 | None:intergenic | 50.0% | |
| TGTATGCCTTCGCCTTTCTC+AGG | + | Chr4:48834360-48834379 | None:intergenic | 50.0% | |
| ! | CAACTCGAGCTTTTGCCCAT+CGG | + | Chr4:48834530-48834549 | None:intergenic | 50.0% |
| ! | CTTTTCCGTTGCTAAGGCAC+CGG | - | Chr4:48834786-48834805 | MsG0480020818.01.T01:CDS | 50.0% |
| ! | GAAGGTTCTGGTGCCAAAGA+TGG | + | Chr4:48834820-48834839 | None:intergenic | 50.0% |
| ! | GCTGGTAGTGTAGGTTGTAC+AGG | + | Chr4:48834232-48834251 | None:intergenic | 50.0% |
| ! | GTGATTGGAGCTGGTAGTGT+AGG | + | Chr4:48834241-48834260 | None:intergenic | 50.0% |
| !! | GCCTTTGCTGTATCGGTTGA+AGG | + | Chr4:48834838-48834857 | None:intergenic | 50.0% |
| !! | GCTGTATCGGTTGAAGGTTC+TGG | + | Chr4:48834832-48834851 | None:intergenic | 50.0% |
| !! | TTTTCCGTTGCTAAGGCACC+GGG | - | Chr4:48834787-48834806 | MsG0480020818.01.T01:CDS | 50.0% |
| AACCAACCCTGTGAGAACGC+TGG | - | Chr4:48834603-48834622 | MsG0480020818.01.T01:CDS | 55.0% | |
| CAGTGCCTTCTCAGGACTCA+AGG | - | Chr4:48834483-48834502 | MsG0480020818.01.T01:CDS | 55.0% | |
| CGGAATCCTGAGAAAGGCGA+AGG | - | Chr4:48834351-48834370 | MsG0480020818.01.T01:CDS | 55.0% | |
| GACGATGTCAACAGTGCCTG+CGG | + | Chr4:48834332-48834351 | None:intergenic | 55.0% | |
| GGTTGTACAGGAGCAGTAGC+AGG | + | Chr4:48834220-48834239 | None:intergenic | 55.0% | |
| GTGTCAGGGGTGGAATCACT+AGG | + | Chr4:48834310-48834329 | None:intergenic | 55.0% | |
| TGCCTTCTCAGGACTCAAGG+CGG | - | Chr4:48834486-48834505 | MsG0480020818.01.T01:CDS | 55.0% | |
| TGGTTTAGGAGCTGCAGCTG+GGG | + | Chr4:48834263-48834282 | None:intergenic | 55.0% | |
| ! | CACCTTTCCGGGTTTAGCTC+CGG | + | Chr4:48834629-48834648 | None:intergenic | 55.0% |
| ! | GCAGGCACTGTTGACATCGT+CGG | - | Chr4:48834331-48834350 | MsG0480020818.01.T01:CDS | 55.0% |
| !! | CCTGAGAAGGCACTGTCATC+CGG | + | Chr4:48834478-48834497 | None:intergenic | 55.0% |
| !! | TTTCCGTTGCTAAGGCACCG+GGG | - | Chr4:48834788-48834807 | MsG0480020818.01.T01:CDS | 55.0% |
| AACCCTGTGAGAACGCTGGC+CGG | - | Chr4:48834607-48834626 | MsG0480020818.01.T01:CDS | 60.0% | |
| CCGGATGACAGTGCCTTCTC+AGG | - | Chr4:48834475-48834494 | MsG0480020818.01.T01:CDS | 60.0% | |
| CGGAGCTAAACCCGGAAAGG+TGG | - | Chr4:48834627-48834646 | MsG0480020818.01.T01:CDS | 60.0% | |
| CTTCCCCGGTGCCTTAGCAA+CGG | + | Chr4:48834794-48834813 | None:intergenic | 60.0% | |
| GCCAAAGATGGTGCCTTCCC+CGG | + | Chr4:48834808-48834827 | None:intergenic | 60.0% | |
| GCCTTCTCAGGACTCAAGGC+GGG | - | Chr4:48834487-48834506 | MsG0480020818.01.T01:CDS | 60.0% | |
| TCAACAGTGCCTGCGGTGTC+AGG | + | Chr4:48834325-48834344 | None:intergenic | 60.0% | |
| TCCCGCCTTGAGTCCTGAGA+AGG | + | Chr4:48834491-48834510 | None:intergenic | 60.0% | |
| ! | AACAGTGCCTGCGGTGTCAG+GGG | + | Chr4:48834323-48834342 | None:intergenic | 60.0% |
| ! | CAACAGTGCCTGCGGTGTCA+GGG | + | Chr4:48834324-48834343 | None:intergenic | 60.0% |
| !! | ACCGGGGAAGGCACCATCTT+TGG | - | Chr4:48834804-48834823 | MsG0480020818.01.T01:CDS | 60.0% |
| ACGCTGGCCGGAGCTAAACC+CGG | - | Chr4:48834619-48834638 | MsG0480020818.01.T01:CDS | 65.0% | |
| CTCCGGCCAGCGTTCTCACA+GGG | + | Chr4:48834612-48834631 | None:intergenic | 65.0% | |
| GATTCCACCCCTGACACCGC+AGG | - | Chr4:48834313-48834332 | MsG0480020818.01.T01:CDS | 65.0% | |
| GCAGCTGGGGTGATTGGAGC+TGG | + | Chr4:48834250-48834269 | None:intergenic | 65.0% | |
| GGAGCTGCAGCTGGGGTGAT+TGG | + | Chr4:48834256-48834275 | None:intergenic | 65.0% | |
| GGCCAGCGTTCTCACAGGGT+TGG | + | Chr4:48834608-48834627 | None:intergenic | 65.0% | |
| GGCCGGAGCTAAACCCGGAA+AGG | - | Chr4:48834624-48834643 | MsG0480020818.01.T01:CDS | 65.0% | |
| !! | CGTTGCTAAGGCACCGGGGA+AGG | - | Chr4:48834792-48834811 | MsG0480020818.01.T01:CDS | 65.0% |
| GCTCCGGCCAGCGTTCTCAC+AGG | + | Chr4:48834613-48834632 | None:intergenic | 70.0% | |
| ! | AGTGCCTGCGGTGTCAGGGG+TGG | + | Chr4:48834320-48834339 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 48834127 | 48835002 | 48834127 | ID=MsG0480020818.01;Name=MsG0480020818.01 |
| Chr4 | mRNA | 48834127 | 48835002 | 48834127 | ID=MsG0480020818.01.T01;Parent=MsG0480020818.01;Name=MsG0480020818.01.T01;_AED=0.19;_eAED=0.19;_QI=0|-1|0|1|-1|1|1|0|291 |
| Chr4 | exon | 48834127 | 48835002 | 48834127 | ID=MsG0480020818.01.T01:exon:678;Parent=MsG0480020818.01.T01 |
| Chr4 | CDS | 48834127 | 48835002 | 48834127 | ID=MsG0480020818.01.T01:cds;Parent=MsG0480020818.01.T01 |
| Gene Sequence |
| Protein sequence |
