Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880047773.01.T01 | XP_013458702.2 | 96.748 | 369 | 12 | 0 | 3 | 371 | 5 | 373 | 0 | 748 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880047773.01.T01 | O65780 | 81.87 | 353 | 62 | 1 | 12 | 364 | 1 | 351 | 0 | 619 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880047773.01.T01 | A0A396IKG9 | 96.748 | 369 | 12 | 0 | 3 | 371 | 5 | 373 | 0.0 | 748 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0880045339.01 | MsG0880047773.01 | 0.896189 | 4.684536e-76 | 5.013028e-72 |
| MsG0780040592.01 | MsG0880047773.01 | 0.802756 | 4.823897e-49 | 2.382250e-46 |
| MsG0880042557.01 | MsG0880047773.01 | 0.844370 | 7.885323e-59 | 1.270220e-55 |
| MsG0280010891.01 | MsG0880047773.01 | 0.876019 | 1.946459e-68 | 9.289203e-65 |
| MsG0480020552.01 | MsG0880047773.01 | 0.921980 | 1.780413e-88 | 6.554605e-84 |
| MsG0480020815.01 | MsG0880047773.01 | 0.828393 | 9.217152e-55 | 9.149863e-52 |
| MsG0480020816.01 | MsG0880047773.01 | 0.818613 | 1.788898e-52 | 1.345467e-49 |
| MsG0480020817.01 | MsG0880047773.01 | 0.859019 | 5.525521e-63 | 1.438286e-59 |
| MsG0480020818.01 | MsG0880047773.01 | 0.883656 | 3.729855e-71 | 2.386434e-67 |
| MsG0480023113.01 | MsG0880047773.01 | 0.836747 | 7.804704e-57 | 9.927744e-54 |
| MsG0480023114.01 | MsG0880047773.01 | 0.844166 | 8.947148e-59 | 1.432171e-55 |
| MsG0480023115.01 | MsG0880047773.01 | 0.893228 | 7.641623e-75 | 7.219970e-71 |
| MsG0480023116.01 | MsG0880047773.01 | 0.878335 | 3.051995e-69 | 1.587402e-65 |
| MsG0280006934.01 | MsG0880047773.01 | 0.806329 | 8.674324e-50 | 4.695106e-47 |
| MsG0280009327.01 | MsG0880047773.01 | 0.815647 | 8.304962e-52 | 5.759126e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0280010769.01 | MsG0880047773.01 | PPI |
| MsG0880047773.01 | MsG0580024333.01 | PPI |
| MsG0880047773.01 | MsG0580024334.01 | PPI |
| MsG0880047773.01 | MsG0280010770.01 | PPI |
| MsG0880047773.01 | MsG0480020932.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880047773.01.T01 | MTR_4g134490 | 96.477 | 369 | 13 | 0 | 3 | 371 | 5 | 373 | 0.0 | 746 |
| MsG0880047773.01.T01 | MTR_4g134490 | 94.933 | 375 | 13 | 1 | 3 | 371 | 5 | 379 | 0.0 | 739 |
| MsG0880047773.01.T01 | MTR_8g096880 | 79.130 | 345 | 72 | 0 | 20 | 364 | 3 | 347 | 0.0 | 590 |
| MsG0880047773.01.T01 | MTR_8g096880 | 78.505 | 321 | 69 | 0 | 20 | 340 | 3 | 323 | 0.0 | 539 |
| MsG0880047773.01.T01 | MTR_8g096880 | 78.425 | 292 | 63 | 0 | 20 | 311 | 3 | 294 | 5.56e-173 | 484 |
| MsG0880047773.01.T01 | MTR_5g009170 | 66.860 | 344 | 112 | 2 | 20 | 363 | 44 | 385 | 1.35e-172 | 486 |
| MsG0880047773.01.T01 | MTR_8g099535 | 67.155 | 341 | 110 | 2 | 23 | 363 | 4 | 342 | 3.55e-170 | 478 |
| MsG0880047773.01.T01 | MTR_5g009160 | 65.689 | 341 | 115 | 2 | 23 | 363 | 4 | 342 | 5.18e-168 | 473 |
| MsG0880047773.01.T01 | MTR_5g009160 | 67.658 | 269 | 86 | 1 | 95 | 363 | 12 | 279 | 3.22e-136 | 390 |
| MsG0880047773.01.T01 | MTR_5g009160 | 66.359 | 217 | 72 | 1 | 95 | 311 | 12 | 227 | 1.79e-103 | 305 |
| MsG0880047773.01.T01 | MTR_2g032100 | 41.311 | 351 | 180 | 10 | 25 | 363 | 73 | 409 | 3.66e-82 | 256 |
| MsG0880047773.01.T01 | MTR_8g089180 | 40.510 | 353 | 184 | 10 | 25 | 365 | 73 | 411 | 2.86e-78 | 247 |
| MsG0880047773.01.T01 | MTR_8g089180 | 40.510 | 353 | 184 | 10 | 25 | 365 | 73 | 411 | 2.86e-78 | 247 |
| MsG0880047773.01.T01 | MTR_2g032100 | 42.857 | 196 | 107 | 5 | 25 | 219 | 73 | 264 | 3.15e-46 | 160 |
| MsG0880047773.01.T01 | MTR_8g099285 | 74.545 | 55 | 13 | 1 | 255 | 309 | 3 | 56 | 7.17e-21 | 85.5 |
| MsG0880047773.01.T01 | MTR_1g009600 | 25.212 | 353 | 223 | 13 | 21 | 362 | 3 | 325 | 1.66e-19 | 90.5 |
| MsG0880047773.01.T01 | MTR_2g073240 | 24.786 | 351 | 223 | 14 | 23 | 362 | 19 | 339 | 6.36e-19 | 89.0 |
| MsG0880047773.01.T01 | MTR_4g102270 | 25.197 | 381 | 235 | 11 | 1 | 355 | 63 | 419 | 3.23e-17 | 83.2 |
| MsG0880047773.01.T01 | MTR_0034s0060 | 23.714 | 350 | 228 | 13 | 23 | 362 | 137 | 457 | 4.21e-17 | 83.6 |
| MsG0880047773.01.T01 | MTR_4g120030 | 27.596 | 337 | 194 | 13 | 18 | 347 | 106 | 399 | 2.05e-16 | 80.5 |
| MsG0880047773.01.T01 | MTR_4g129820 | 24.862 | 362 | 238 | 11 | 9 | 355 | 79 | 421 | 1.43e-15 | 78.2 |
| MsG0880047773.01.T01 | MTR_5g011940 | 24.793 | 363 | 241 | 12 | 8 | 355 | 71 | 416 | 3.97e-15 | 76.6 |
| MsG0880047773.01.T01 | MTR_1g088480 | 26.970 | 330 | 191 | 13 | 25 | 347 | 120 | 406 | 1.08e-13 | 72.4 |
| MsG0880047773.01.T01 | MTR_1g067530 | 26.705 | 352 | 207 | 17 | 22 | 347 | 111 | 437 | 6.81e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880047773.01.T01 | AT1G12780 | 78.797 | 349 | 74 | 0 | 19 | 367 | 3 | 351 | 0.0 | 591 |
| MsG0880047773.01.T01 | AT1G63180 | 76.590 | 346 | 81 | 0 | 19 | 364 | 3 | 348 | 0.0 | 579 |
| MsG0880047773.01.T01 | AT4G10960 | 66.959 | 342 | 111 | 2 | 23 | 364 | 4 | 343 | 2.15e-174 | 489 |
| MsG0880047773.01.T01 | AT4G23920 | 67.160 | 338 | 109 | 2 | 23 | 360 | 3 | 338 | 2.08e-170 | 479 |
| MsG0880047773.01.T01 | AT1G64440 | 66.372 | 339 | 112 | 2 | 25 | 363 | 5 | 341 | 1.51e-169 | 477 |
| MsG0880047773.01.T01 | AT1G63180 | 75.601 | 291 | 71 | 0 | 19 | 309 | 3 | 293 | 6.18e-169 | 474 |
| MsG0880047773.01.T01 | AT5G44480 | 38.857 | 350 | 190 | 8 | 25 | 363 | 73 | 409 | 3.92e-78 | 246 |
| MsG0880047773.01.T01 | AT5G44480 | 38.857 | 350 | 190 | 8 | 25 | 363 | 73 | 409 | 3.92e-78 | 246 |
| MsG0880047773.01.T01 | AT5G44480 | 38.857 | 350 | 190 | 8 | 25 | 363 | 73 | 409 | 3.92e-78 | 246 |
| MsG0880047773.01.T01 | AT5G44480 | 38.857 | 350 | 190 | 8 | 25 | 363 | 97 | 433 | 1.03e-77 | 246 |
| MsG0880047773.01.T01 | AT4G20460 | 38.000 | 350 | 193 | 7 | 25 | 363 | 72 | 408 | 3.23e-76 | 241 |
| MsG0880047773.01.T01 | AT1G30620 | 38.352 | 352 | 193 | 8 | 25 | 365 | 72 | 410 | 3.06e-74 | 236 |
| MsG0880047773.01.T01 | AT1G30620 | 38.352 | 352 | 193 | 8 | 25 | 365 | 73 | 411 | 3.07e-74 | 236 |
| MsG0880047773.01.T01 | AT1G30620 | 38.352 | 352 | 193 | 8 | 25 | 365 | 73 | 411 | 3.07e-74 | 236 |
| MsG0880047773.01.T01 | AT1G30620 | 38.352 | 352 | 193 | 8 | 25 | 365 | 73 | 411 | 3.07e-74 | 236 |
| MsG0880047773.01.T01 | AT1G30620 | 38.352 | 352 | 193 | 8 | 25 | 365 | 73 | 411 | 3.07e-74 | 236 |
| MsG0880047773.01.T01 | AT2G34850 | 36.134 | 238 | 130 | 6 | 137 | 363 | 1 | 227 | 4.80e-42 | 147 |
| MsG0880047773.01.T01 | AT2G34850 | 36.134 | 238 | 130 | 6 | 137 | 363 | 1 | 227 | 4.80e-42 | 147 |
| MsG0880047773.01.T01 | AT2G34850 | 36.134 | 238 | 130 | 6 | 137 | 363 | 1 | 227 | 4.80e-42 | 147 |
| MsG0880047773.01.T01 | AT2G34850 | 36.134 | 238 | 130 | 6 | 137 | 363 | 1 | 227 | 4.80e-42 | 147 |
| MsG0880047773.01.T01 | AT1G30620 | 38.974 | 195 | 116 | 3 | 25 | 219 | 73 | 264 | 2.24e-41 | 147 |
| MsG0880047773.01.T01 | AT3G14790 | 24.370 | 357 | 231 | 12 | 16 | 362 | 3 | 330 | 6.28e-19 | 89.0 |
| MsG0880047773.01.T01 | AT1G53500 | 24.571 | 350 | 225 | 13 | 23 | 362 | 9 | 329 | 6.94e-19 | 89.0 |
| MsG0880047773.01.T01 | AT3G14790 | 24.571 | 350 | 225 | 12 | 23 | 362 | 7 | 327 | 1.10e-18 | 88.2 |
| MsG0880047773.01.T01 | AT3G62830 | 28.182 | 330 | 192 | 15 | 25 | 347 | 121 | 412 | 1.09e-17 | 84.7 |
| MsG0880047773.01.T01 | AT3G62830 | 28.182 | 330 | 192 | 15 | 25 | 347 | 121 | 412 | 1.09e-17 | 84.7 |
| MsG0880047773.01.T01 | AT3G53520 | 27.809 | 356 | 208 | 16 | 21 | 365 | 118 | 435 | 3.50e-17 | 83.2 |
| MsG0880047773.01.T01 | AT2G47650 | 27.879 | 330 | 193 | 15 | 25 | 347 | 123 | 414 | 4.60e-17 | 82.8 |
| MsG0880047773.01.T01 | AT1G78570 | 24.786 | 351 | 223 | 14 | 23 | 362 | 7 | 327 | 6.56e-17 | 82.8 |
| MsG0880047773.01.T01 | AT3G53520 | 27.528 | 356 | 207 | 16 | 21 | 365 | 118 | 433 | 1.55e-15 | 78.2 |
| MsG0880047773.01.T01 | AT4G12250 | 25.474 | 369 | 243 | 12 | 1 | 355 | 72 | 422 | 2.86e-15 | 77.4 |
| MsG0880047773.01.T01 | AT2G47650 | 27.381 | 336 | 193 | 16 | 25 | 347 | 123 | 420 | 4.85e-15 | 76.6 |
| MsG0880047773.01.T01 | AT4G30440 | 25.337 | 371 | 225 | 15 | 9 | 355 | 72 | 414 | 8.22e-15 | 75.9 |
| MsG0880047773.01.T01 | AT3G53520 | 27.473 | 364 | 182 | 20 | 21 | 347 | 118 | 436 | 1.22e-13 | 72.4 |
| MsG0880047773.01.T01 | AT3G53520 | 29.762 | 252 | 138 | 13 | 21 | 265 | 118 | 337 | 8.34e-11 | 63.2 |
Find 145 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCAAATGACACTGAGAATT+TGG | 0.099568 | 8:-90643958 | None:intergenic |
| TCATCCTCTGCAGCAGTTTA+TGG | 0.176720 | 8:+90642567 | MsG0880047773.01.T01:CDS |
| TTGCCCGAGCTCAACGTTTA+TGG | 0.230700 | 8:+90642907 | MsG0880047773.01.T01:CDS |
| CCCAAATTCTCAGTGTCATT+TGG | 0.232642 | 8:+90643957 | MsG0880047773.01.T01:three_prime_UTR |
| CCAAATTCTCAGTGTCATTT+GGG | 0.252905 | 8:+90643958 | MsG0880047773.01.T01:three_prime_UTR |
| TAAGTAAGGCATCAGATTAT+TGG | 0.264960 | 8:-90642863 | None:intergenic |
| CATAAGGATTCATGGCTTGC+AGG | 0.302019 | 8:-90642626 | None:intergenic |
| GCTGCATTTGAAAAGGCTTC+TGG | 0.308975 | 8:+90643264 | MsG0880047773.01.T01:CDS |
| AAGACCATGTGCCTAGAAAA+AGG | 0.326070 | 8:+90643863 | MsG0880047773.01.T01:three_prime_UTR |
| GGTTCTTCCATAAGGATTCA+TGG | 0.337426 | 8:-90642634 | None:intergenic |
| TACCAGCTTGAGCTTGGGTT+TGG | 0.340617 | 8:+90643662 | MsG0880047773.01.T01:CDS |
| AAGTAAGGCATCAGATTATT+GGG | 0.352747 | 8:-90642862 | None:intergenic |
| GGTCGTTCAGCTTCTAAAAC+AGG | 0.355343 | 8:+90642239 | MsG0880047773.01.T01:CDS |
| CTGCAAGCCATGAATCCTTA+TGG | 0.360608 | 8:+90642627 | MsG0880047773.01.T01:CDS |
| TGTCCACAGGGTTCGCCATT+TGG | 0.362347 | 8:+90642311 | MsG0880047773.01.T01:CDS |
| TATATCTTAAGATGGTAGTA+TGG | 0.362827 | 8:-90643787 | None:intergenic |
| GTCGGAAAGGAAAACGATAA+TGG | 0.375088 | 8:+90642182 | MsG0880047773.01.T01:CDS |
| ACCAGCTTGAGCTTGGGTTT+GGG | 0.376831 | 8:+90643663 | MsG0880047773.01.T01:CDS |
| GTGCATGCAGAGACGGAATT+GGG | 0.379121 | 8:+90642124 | None:intergenic |
| TGTGCAGAGACCAATGGAAT+TGG | 0.380858 | 8:+90643618 | MsG0880047773.01.T01:CDS |
| GCAATCTTCCAACTGCTACT+TGG | 0.382864 | 8:-90642888 | None:intergenic |
| ACGGGTGGGGCGGGGTTCAT+TGG | 0.384071 | 8:+90642207 | MsG0880047773.01.T01:CDS |
| CAAGAGAATGAGAGGATAGT+AGG | 0.395463 | 8:-90643746 | None:intergenic |
| CCAAATGACACTGAGAATTT+GGG | 0.400208 | 8:-90643957 | None:intergenic |
| ACTCACCGCAGTGCCATCTT+TGG | 0.403250 | 8:-90642944 | None:intergenic |
| AGTACCTTGGTTCTTCCATA+AGG | 0.405042 | 8:-90642642 | None:intergenic |
| TGGGGATACCAGCTTGAGCT+TGG | 0.405772 | 8:+90643656 | MsG0880047773.01.T01:CDS |
| ATTGTAGAGATTGTCGATAA+TGG | 0.413237 | 8:-90642274 | None:intergenic |
| TAATGGTAACGGGTGGGGCG+GGG | 0.417054 | 8:+90642199 | MsG0880047773.01.T01:CDS |
| CAATCTTCCAACTGCTACTT+GGG | 0.419596 | 8:-90642887 | None:intergenic |
| GGTGCATGCAGAGACGGAAT+TGG | 0.423829 | 8:+90642123 | None:intergenic |
| GGGGATACCAGCTTGAGCTT+GGG | 0.426150 | 8:+90643657 | MsG0880047773.01.T01:CDS |
| TGAGATACTTCAATCCGGTT+GGG | 0.434754 | 8:+90642797 | MsG0880047773.01.T01:CDS |
| GCACATGAGAGCGGTGAGAT+TGG | 0.438760 | 8:+90642820 | MsG0880047773.01.T01:CDS |
| TGTTGCTTGCCCAATTCCAT+TGG | 0.442181 | 8:-90643628 | None:intergenic |
| CCGCTCTCATGTGCCCCAAC+CGG | 0.449340 | 8:-90642811 | None:intergenic |
| GATAATGGTAACGGGTGGGG+CGG | 0.450585 | 8:+90642197 | MsG0880047773.01.T01:CDS |
| TCAAAATTTATATCTTAAGA+TGG | 0.453720 | 8:-90643795 | None:intergenic |
| TCAACGCAGGGAATTTCATC+TGG | 0.454641 | 8:-90642594 | None:intergenic |
| CACCGCAGTGCCATCTTTGG+TGG | 0.455579 | 8:-90642941 | None:intergenic |
| ATAATGGTAACGGGTGGGGC+GGG | 0.455901 | 8:+90642198 | MsG0880047773.01.T01:CDS |
| CACAGGGTTCGCCATTTGGT+TGG | 0.459853 | 8:+90642315 | MsG0880047773.01.T01:CDS |
| AATGGTTGCTGCATTTGAAA+AGG | 0.465118 | 8:+90643257 | MsG0880047773.01.T01:CDS |
| TACAACTTGGGAACTGGCCG+CGG | 0.465961 | 8:+90643219 | MsG0880047773.01.T01:CDS |
| ATAGATAGCAGTAGCATCTC+CGG | 0.466954 | 8:-90643430 | None:intergenic |
| AGATTATTGGGTATGCCCCT+TGG | 0.469183 | 8:-90642850 | None:intergenic |
| GTGCAGAGACCAATGGAATT+GGG | 0.470949 | 8:+90643619 | MsG0880047773.01.T01:CDS |
| AGTGCCTACAACTTGGGAAC+TGG | 0.472400 | 8:+90643213 | MsG0880047773.01.T01:CDS |
| TACTTAACCCAAGTAGCAGT+TGG | 0.476959 | 8:+90642880 | MsG0880047773.01.T01:CDS |
| AACGATAATGGTAACGGGTG+GGG | 0.478155 | 8:+90642194 | MsG0880047773.01.T01:CDS |
| TTTCTTTAGATATATAGATC+AGG | 0.479719 | 8:+90643930 | MsG0880047773.01.T01:three_prime_UTR |
| CATAAGGCTGAAAATGAACT+TGG | 0.482154 | 8:+90643462 | MsG0880047773.01.T01:CDS |
| CATGATTATCCCACCAAAGA+TGG | 0.483974 | 8:+90642931 | MsG0880047773.01.T01:CDS |
| GCTTAAGTATATTTAAAGAG+AGG | 0.486117 | 8:-90644053 | None:intergenic |
| TGAACTGCATGTATAACAAA+AGG | 0.488211 | 8:-90643822 | None:intergenic |
| CATCTGCCAGGTCCATTACA+TGG | 0.489946 | 8:-90643059 | None:intergenic |
| GGTTGTAGTGCCTACAACTT+GGG | 0.490332 | 8:+90643207 | MsG0880047773.01.T01:intron |
| ATTGGGCAAGCAACAATCCA+TGG | 0.492922 | 8:+90643636 | MsG0880047773.01.T01:CDS |
| CCGTCATGGAAGCTGTCCAC+AGG | 0.495003 | 8:+90642298 | MsG0880047773.01.T01:CDS |
| CGGTACATCAGTGCTTCAAA+TGG | 0.497630 | 8:+90643239 | MsG0880047773.01.T01:CDS |
| CTGAGATACTTCAATCCGGT+TGG | 0.503362 | 8:+90642796 | MsG0880047773.01.T01:CDS |
| TATCTATGCATCTACGCATA+AGG | 0.505409 | 8:+90643446 | MsG0880047773.01.T01:CDS |
| GTGAGATTGGCGAAGATCCA+AGG | 0.505565 | 8:+90642833 | MsG0880047773.01.T01:CDS |
| GTGGATCACAGCGTCAAACT+TGG | 0.505767 | 8:-90642418 | None:intergenic |
| AGGCTGAAAATGAACTTGGT+TGG | 0.510946 | 8:+90643466 | MsG0880047773.01.T01:CDS |
| TGACCATAAACGTTGAGCTC+GGG | 0.516024 | 8:-90642910 | None:intergenic |
| GTAGCATCTCCGGGCCTCCT+CGG | 0.516501 | 8:-90643420 | None:intergenic |
| ACGGGACTTTATCCATGTAA+TGG | 0.518510 | 8:+90643047 | MsG0880047773.01.T01:CDS |
| GCAGAGACGGAATTGGGGAT+TGG | 0.519500 | 8:+90642130 | MsG0880047773.01.T01:CDS |
| GATGGTAGTATGGTAGAAGA+AGG | 0.521298 | 8:-90643777 | None:intergenic |
| AGGTTGTAGTGCCTACAACT+TGG | 0.522897 | 8:+90643206 | MsG0880047773.01.T01:intron |
| GCGGCCAGTTCCCAAGTTGT+AGG | 0.524177 | 8:-90643217 | None:intergenic |
| CAGCAATGTGACCATCTGCC+AGG | 0.524516 | 8:-90643071 | None:intergenic |
| CTCTGCGACACTTTCTCCCA+CGG | 0.527424 | 8:-90642457 | None:intergenic |
| ACTGCTACTTGGGTTAAGTA+AGG | 0.528316 | 8:-90642877 | None:intergenic |
| GAGATACTTCAATCCGGTTG+GGG | 0.536252 | 8:+90642798 | MsG0880047773.01.T01:CDS |
| AAAATGTGTCCGAGGAGGCC+CGG | 0.536292 | 8:+90643411 | MsG0880047773.01.T01:CDS |
| GACGCTGTGATCCACTTTGG+TGG | 0.540445 | 8:+90642426 | MsG0880047773.01.T01:CDS |
| ACAAAATACAAGAGAATGAG+AGG | 0.545453 | 8:-90643754 | None:intergenic |
| AGGAAAACGATAATGGTAAC+GGG | 0.546669 | 8:+90642189 | MsG0880047773.01.T01:CDS |
| TTGATTGACAGGGCAAAATA+CGG | 0.547401 | 8:+90643584 | MsG0880047773.01.T01:intron |
| ATGGTGAAAGCGGAGGTAGT+TGG | 0.547626 | 8:-90642349 | None:intergenic |
| TCTCCAACTCTTGCTTGTTG+CGG | 0.553361 | 8:-90642380 | None:intergenic |
| ATTGGAAAGAGATGGTGAGT+GGG | 0.558504 | 8:+90642148 | MsG0880047773.01.T01:CDS |
| AAAGTTGAGGACCAACCAAA+TGG | 0.558547 | 8:-90642326 | None:intergenic |
| GGCAATACCAATCGTCGGAA+AGG | 0.560434 | 8:+90642169 | MsG0880047773.01.T01:CDS |
| CTTTGGTGGTCTGAAAGCCG+TGG | 0.561091 | 8:+90642440 | MsG0880047773.01.T01:CDS |
| TGAGATTGGCGAAGATCCAA+GGG | 0.561571 | 8:+90642834 | MsG0880047773.01.T01:CDS |
| TCTCCGCAACAAGCAAGAGT+TGG | 0.561707 | 8:+90642377 | MsG0880047773.01.T01:CDS |
| TTGGGCAAGCAACAATCCAT+GGG | 0.563515 | 8:+90643637 | MsG0880047773.01.T01:CDS |
| CAGGGCAAAATACGGTATAG+AGG | 0.565533 | 8:+90643592 | MsG0880047773.01.T01:intron |
| ATTTGAAAAGGCTTCTGGCA+AGG | 0.566930 | 8:+90643269 | MsG0880047773.01.T01:CDS |
| TCCCAAACCCAAGCTCAAGC+TGG | 0.567837 | 8:-90643664 | None:intergenic |
| AAATGAGGTGCATGCAGAGA+CGG | 0.568533 | 8:+90642117 | None:intergenic |
| ATTGCTGAGATACTTCAATC+CGG | 0.576619 | 8:+90642792 | MsG0880047773.01.T01:CDS |
| ATGACCATAAACGTTGAGCT+CGG | 0.577684 | 8:-90642911 | None:intergenic |
| GATTGCACGAGATATTCAAA+AGG | 0.578799 | 8:+90642747 | MsG0880047773.01.T01:CDS |
| CTTTATCCATGTAATGGACC+TGG | 0.579239 | 8:+90643053 | MsG0880047773.01.T01:CDS |
| CAAATTCTCAGTGTCATTTG+GGG | 0.580901 | 8:+90643959 | MsG0880047773.01.T01:three_prime_UTR |
| CATGTAATGGACCTGGCAGA+TGG | 0.583826 | 8:+90643060 | MsG0880047773.01.T01:CDS |
| AGCAATATTATCCTCCACTC+TGG | 0.589937 | 8:-90642775 | None:intergenic |
| TTCAAAAGGCAGAGCCAGAG+TGG | 0.592430 | 8:+90642761 | MsG0880047773.01.T01:CDS |
| ATGAAGTGTATATGTGTGGA+AGG | 0.593615 | 8:-90643723 | None:intergenic |
| AGCTCAAGCTGGTATCCCCA+TGG | 0.594214 | 8:-90643653 | None:intergenic |
| TTTGACGCTGTGATCCACTT+TGG | 0.595864 | 8:+90642423 | MsG0880047773.01.T01:CDS |
| CGGAGGTAGTTGGAAAGTTG+AGG | 0.595990 | 8:-90642339 | None:intergenic |
| AATTGGGGATTGGAAAGAGA+TGG | 0.602272 | 8:+90642140 | MsG0880047773.01.T01:CDS |
| TAGATAGCAGTAGCATCTCC+GGG | 0.603256 | 8:-90643429 | None:intergenic |
| AAACGATAATGGTAACGGGT+GGG | 0.605066 | 8:+90642193 | MsG0880047773.01.T01:CDS |
| CAGGTGGAAGTCCTCAACGC+AGG | 0.605927 | 8:-90642607 | None:intergenic |
| GATTGGAAAGAGATGGTGAG+TGG | 0.608418 | 8:+90642147 | MsG0880047773.01.T01:CDS |
| AGGAGATGTGCAGAGACCAA+TGG | 0.609293 | 8:+90643612 | MsG0880047773.01.T01:CDS |
| ACCGCAGTGCCATCTTTGGT+GGG | 0.615427 | 8:-90642940 | None:intergenic |
| AAGGAAAACGATAATGGTAA+CGG | 0.616022 | 8:+90642188 | MsG0880047773.01.T01:CDS |
| CGTCATGGAAGCTGTCCACA+GGG | 0.616430 | 8:+90642299 | MsG0880047773.01.T01:CDS |
| AAGGATTCATGGCTTGCAGG+TGG | 0.618135 | 8:-90642623 | None:intergenic |
| CGGCTTTCAGACCACCAAAG+TGG | 0.621055 | 8:-90642437 | None:intergenic |
| TTGTGATCAAAATATTTGAG+TGG | 0.621926 | 8:-90642480 | None:intergenic |
| TTTGGTGGTCTGAAAGCCGT+GGG | 0.624204 | 8:+90642441 | MsG0880047773.01.T01:CDS |
| TGCATGCAGAGACGGAATTG+GGG | 0.625546 | 8:+90642125 | None:intergenic |
| AGGTGGAAGTCCTCAACGCA+GGG | 0.631756 | 8:-90642606 | None:intergenic |
| AGATGAAATTCCCTGCGTTG+AGG | 0.633891 | 8:+90642596 | MsG0880047773.01.T01:CDS |
| GAAGGTGAAAGTGAAGATGA+AGG | 0.634248 | 8:-90643705 | None:intergenic |
| CAATCTCTACAATTCCGTCA+TGG | 0.635522 | 8:+90642284 | MsG0880047773.01.T01:CDS |
| AAAACGATAATGGTAACGGG+TGG | 0.639831 | 8:+90642192 | MsG0880047773.01.T01:CDS |
| CCGGTTGGGGCACATGAGAG+CGG | 0.640769 | 8:+90642811 | MsG0880047773.01.T01:CDS |
| TTCCTATTAAAATGTGTCCG+AGG | 0.642928 | 8:+90643403 | MsG0880047773.01.T01:CDS |
| GAGTGGGCAATACCAATCGT+CGG | 0.643532 | 8:+90642164 | MsG0880047773.01.T01:CDS |
| GTCGTTCAGCTTCTAAAACA+GGG | 0.648315 | 8:+90642240 | MsG0880047773.01.T01:CDS |
| AAAAGGCAGAGCCAGAGTGG+AGG | 0.653042 | 8:+90642764 | MsG0880047773.01.T01:CDS |
| GGAGATCGACATGGTGAAAG+CGG | 0.655928 | 8:-90642359 | None:intergenic |
| CTATTAAAATGTGTCCGAGG+AGG | 0.658139 | 8:+90643406 | MsG0880047773.01.T01:CDS |
| GCTTGTTGCGGAGATCGACA+TGG | 0.660195 | 8:-90642368 | None:intergenic |
| TAGGATGAAGTGTATATGTG+TGG | 0.662538 | 8:-90643727 | None:intergenic |
| TTGACCATAAACTGCTGCAG+AGG | 0.664691 | 8:-90642571 | None:intergenic |
| CAACCAAATGGCGAACCCTG+TGG | 0.665060 | 8:-90642314 | None:intergenic |
| GATCGACATGGTGAAAGCGG+AGG | 0.669740 | 8:-90642356 | None:intergenic |
| CCTGTGGACAGCTTCCATGA+CGG | 0.679733 | 8:-90642298 | None:intergenic |
| GTAGTCTGTGTATAAAACGT+AGG | 0.684022 | 8:-90643996 | None:intergenic |
| GAATCCTTATGGAAGAACCA+AGG | 0.701863 | 8:+90642638 | MsG0880047773.01.T01:CDS |
| GGGGTTCATTGGATCACACA+CGG | 0.730801 | 8:+90642218 | MsG0880047773.01.T01:CDS |
| TTTGAAGCACTGATGTACCG+CGG | 0.744540 | 8:-90643236 | None:intergenic |
| TGGGCAAGCAACAATCCATG+GGG | 0.753069 | 8:+90643638 | MsG0880047773.01.T01:CDS |
| GAGATTGGCGAAGATCCAAG+GGG | 0.771146 | 8:+90642835 | MsG0880047773.01.T01:CDS |
| TCCCACCAAAGATGGCACTG+CGG | 0.774633 | 8:+90642939 | MsG0880047773.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAATACTGTTATTATT+AGG | + | Chr8:90643186-90643205 | MsG0880047773.01.T01:intron | 10.0% |
| !!! | ATCATTATTCATTATTTTAA+TGG | - | Chr8:90642683-90642702 | None:intergenic | 10.0% |
| !! | TCAAAATTTATATCTTAAGA+TGG | - | Chr8:90643798-90643817 | None:intergenic | 15.0% |
| !! | AGAATACAATACAATACATT+CGG | - | Chr8:90643340-90643359 | None:intergenic | 20.0% |
| !! | AGTACTTTACTATATTTCAT+TGG | + | Chr8:90643494-90643513 | MsG0880047773.01.T01:intron | 20.0% |
| !! | ATAAACAGTTAAATGTAAGT+AGG | - | Chr8:90643137-90643156 | None:intergenic | 20.0% |
| !! | TAAATTTCAGTGTAAAAAGA+TGG | + | Chr8:90642539-90642558 | MsG0880047773.01.T01:CDS | 20.0% |
| !! | TTTCTTTAGATATATAGATC+AGG | + | Chr8:90643930-90643949 | MsG0880047773.01.T01:three_prime_UTR | 20.0% |
| !!! | ACATTTTAATAGGAATTTTC+TGG | - | Chr8:90643398-90643417 | None:intergenic | 20.0% |
| ! | AACAGTATTTAATTAAGTCC+TGG | - | Chr8:90643180-90643199 | None:intergenic | 25.0% |
| ! | ACAATATATGAATCAGATAC+GGG | + | Chr8:90643029-90643048 | MsG0880047773.01.T01:intron | 25.0% |
| ! | ACTTTACTATATTTCATTGG+AGG | + | Chr8:90643497-90643516 | MsG0880047773.01.T01:intron | 25.0% |
| ! | ATGAATAATGATACTTAAGC+TGG | + | Chr8:90642691-90642710 | MsG0880047773.01.T01:intron | 25.0% |
| ! | GACAATATATGAATCAGATA+CGG | + | Chr8:90643028-90643047 | MsG0880047773.01.T01:intron | 25.0% |
| ! | GCTTAAGTATATTTAAAGAG+AGG | - | Chr8:90644056-90644075 | None:intergenic | 25.0% |
| ! | TATATCTTAAGATGGTAGTA+TGG | - | Chr8:90643790-90643809 | None:intergenic | 25.0% |
| ! | TCAGTATCAGAATATATGTT+GGG | - | Chr8:90643010-90643029 | None:intergenic | 25.0% |
| ! | TTATTTACGATTGATTGACA+GGG | + | Chr8:90643574-90643593 | MsG0880047773.01.T01:intron | 25.0% |
| ! | TTGTGATCAAAATATTTGAG+TGG | - | Chr8:90642483-90642502 | None:intergenic | 25.0% |
| ! | TTTATTTACGATTGATTGAC+AGG | + | Chr8:90643573-90643592 | MsG0880047773.01.T01:intron | 25.0% |
| !!! | CAAATATTTTGATCACAACT+TGG | + | Chr8:90642485-90642504 | MsG0880047773.01.T01:CDS | 25.0% |
| ACAAAATACAAGAGAATGAG+AGG | - | Chr8:90643757-90643776 | None:intergenic | 30.0% | |
| AGTCATCACTTGAAAAAGAT+TGG | - | Chr8:90642520-90642539 | None:intergenic | 30.0% | |
| ATATACTGAGTTAAGTACCT+TGG | - | Chr8:90642658-90642677 | None:intergenic | 30.0% | |
| ATTGTAGAGATTGTCGATAA+TGG | - | Chr8:90642277-90642296 | None:intergenic | 30.0% | |
| GTCAGTATCAGAATATATGT+TGG | - | Chr8:90643011-90643030 | None:intergenic | 30.0% | |
| TACTATATTTCATTGGAGGA+GGG | + | Chr8:90643501-90643520 | MsG0880047773.01.T01:intron | 30.0% | |
| TGAACTGCATGTATAACAAA+AGG | - | Chr8:90643825-90643844 | None:intergenic | 30.0% | |
| TTACTATATTTCATTGGAGG+AGG | + | Chr8:90643500-90643519 | MsG0880047773.01.T01:intron | 30.0% | |
| ! | AAGGAAAACGATAATGGTAA+CGG | + | Chr8:90642188-90642207 | MsG0880047773.01.T01:CDS | 30.0% |
| ! | AAGTAAGGCATCAGATTATT+GGG | - | Chr8:90642865-90642884 | None:intergenic | 30.0% |
| ! | GACTACTGTAAAAATCGTTT+TGG | + | Chr8:90644013-90644032 | MsG0880047773.01.T01:three_prime_UTR | 30.0% |
| ! | TAAGTAAGGCATCAGATTAT+TGG | - | Chr8:90642866-90642885 | None:intergenic | 30.0% |
| ! | TAATCAAAGAGCCTTTTTCT+AGG | - | Chr8:90643877-90643896 | None:intergenic | 30.0% |
| !!! | TATTTTGATCACAACTTGGT+TGG | + | Chr8:90642489-90642508 | MsG0880047773.01.T01:CDS | 30.0% |
| AATATATGTTGGGTGCTAAC+TGG | - | Chr8:90643000-90643019 | None:intergenic | 35.0% | |
| AATGGTTGCTGCATTTGAAA+AGG | + | Chr8:90643257-90643276 | MsG0880047773.01.T01:CDS | 35.0% | |
| ATGAAGTGTATATGTGTGGA+AGG | - | Chr8:90643726-90643745 | None:intergenic | 35.0% | |
| ATTGCTGAGATACTTCAATC+CGG | + | Chr8:90642792-90642811 | MsG0880047773.01.T01:CDS | 35.0% | |
| CATAAGGCTGAAAATGAACT+TGG | + | Chr8:90643462-90643481 | MsG0880047773.01.T01:CDS | 35.0% | |
| CCAAATGACACTGAGAATTT+GGG | - | Chr8:90643960-90643979 | None:intergenic | 35.0% | |
| GATTGCACGAGATATTCAAA+AGG | + | Chr8:90642747-90642766 | MsG0880047773.01.T01:CDS | 35.0% | |
| GTAGTCTGTGTATAAAACGT+AGG | - | Chr8:90643999-90644018 | None:intergenic | 35.0% | |
| TAGGATGAAGTGTATATGTG+TGG | - | Chr8:90643730-90643749 | None:intergenic | 35.0% | |
| TATCTATGCATCTACGCATA+AGG | + | Chr8:90643446-90643465 | MsG0880047773.01.T01:CDS | 35.0% | |
| TGTATTCTTGATCCTTCGTT+TGG | + | Chr8:90643352-90643371 | MsG0880047773.01.T01:intron | 35.0% | |
| TTCCTATTAAAATGTGTCCG+AGG | + | Chr8:90643403-90643422 | MsG0880047773.01.T01:CDS | 35.0% | |
| TTGATTGACAGGGCAAAATA+CGG | + | Chr8:90643584-90643603 | MsG0880047773.01.T01:intron | 35.0% | |
| ! | AGGAAAACGATAATGGTAAC+GGG | + | Chr8:90642189-90642208 | MsG0880047773.01.T01:CDS | 35.0% |
| ! | CTTTTTGCGACAGACAAAAT+CGG | + | Chr8:90643105-90643124 | MsG0880047773.01.T01:CDS | 35.0% |
| ! | GAATTGTAGATTAGCTAACC+AGG | + | Chr8:90643159-90643178 | MsG0880047773.01.T01:intron | 35.0% |
| ! | TGATATATGACAGCTTTTCG+CGG | + | Chr8:90642720-90642739 | MsG0880047773.01.T01:intron | 35.0% |
| !! | CAAATTCTCAGTGTCATTTG+GGG | + | Chr8:90643959-90643978 | MsG0880047773.01.T01:three_prime_UTR | 35.0% |
| !! | CCAAATTCTCAGTGTCATTT+GGG | + | Chr8:90643958-90643977 | MsG0880047773.01.T01:three_prime_UTR | 35.0% |
| !!! | GTAAAAATCGTTTTGGTTCG+AGG | + | Chr8:90644020-90644039 | MsG0880047773.01.T01:three_prime_UTR | 35.0% |
| AAAGTTGAGGACCAACCAAA+TGG | - | Chr8:90642329-90642348 | None:intergenic | 40.0% | |
| AAGACCATGTGCCTAGAAAA+AGG | + | Chr8:90643863-90643882 | MsG0880047773.01.T01:three_prime_UTR | 40.0% | |
| AATTGGGGATTGGAAAGAGA+TGG | + | Chr8:90642140-90642159 | MsG0880047773.01.T01:CDS | 40.0% | |
| ACGGGACTTTATCCATGTAA+TGG | + | Chr8:90643047-90643066 | MsG0880047773.01.T01:CDS | 40.0% | |
| AGCAATATTATCCTCCACTC+TGG | - | Chr8:90642778-90642797 | None:intergenic | 40.0% | |
| AGGCTGAAAATGAACTTGGT+TGG | + | Chr8:90643466-90643485 | MsG0880047773.01.T01:CDS | 40.0% | |
| ATAGATAGCAGTAGCATCTC+CGG | - | Chr8:90643433-90643452 | None:intergenic | 40.0% | |
| ATGACCATAAACGTTGAGCT+CGG | - | Chr8:90642914-90642933 | None:intergenic | 40.0% | |
| ATTGGAAAGAGATGGTGAGT+GGG | + | Chr8:90642148-90642167 | MsG0880047773.01.T01:CDS | 40.0% | |
| ATTTGAAAAGGCTTCTGGCA+AGG | + | Chr8:90643269-90643288 | MsG0880047773.01.T01:CDS | 40.0% | |
| CAAGAGAATGAGAGGATAGT+AGG | - | Chr8:90643749-90643768 | None:intergenic | 40.0% | |
| CAATCTCTACAATTCCGTCA+TGG | + | Chr8:90642284-90642303 | MsG0880047773.01.T01:CDS | 40.0% | |
| CATGATTATCCCACCAAAGA+TGG | + | Chr8:90642931-90642950 | MsG0880047773.01.T01:CDS | 40.0% | |
| CCCAAATGACACTGAGAATT+TGG | - | Chr8:90643961-90643980 | None:intergenic | 40.0% | |
| CTATTAAAATGTGTCCGAGG+AGG | + | Chr8:90643406-90643425 | MsG0880047773.01.T01:CDS | 40.0% | |
| GAAGGTGAAAGTGAAGATGA+AGG | - | Chr8:90643708-90643727 | None:intergenic | 40.0% | |
| GAATCCTTATGGAAGAACCA+AGG | + | Chr8:90642638-90642657 | MsG0880047773.01.T01:CDS | 40.0% | |
| GATGGTAGTATGGTAGAAGA+AGG | - | Chr8:90643780-90643799 | None:intergenic | 40.0% | |
| GGTTCTTCCATAAGGATTCA+TGG | - | Chr8:90642637-90642656 | None:intergenic | 40.0% | |
| GTCGGAAAGGAAAACGATAA+TGG | + | Chr8:90642182-90642201 | MsG0880047773.01.T01:CDS | 40.0% | |
| TACTTAACCCAAGTAGCAGT+TGG | + | Chr8:90642880-90642899 | MsG0880047773.01.T01:CDS | 40.0% | |
| TATATTTCATTGGAGGAGGG+AGG | + | Chr8:90643504-90643523 | MsG0880047773.01.T01:intron | 40.0% | |
| TCTGGAAAACAGATCCAAGA+AGG | - | Chr8:90643380-90643399 | None:intergenic | 40.0% | |
| TGAGATACTTCAATCCGGTT+GGG | + | Chr8:90642797-90642816 | MsG0880047773.01.T01:CDS | 40.0% | |
| ! | ACTGCTACTTGGGTTAAGTA+AGG | - | Chr8:90642880-90642899 | None:intergenic | 40.0% |
| ! | AGTACCTTGGTTCTTCCATA+AGG | - | Chr8:90642645-90642664 | None:intergenic | 40.0% |
| ! | CAATCTTCCAACTGCTACTT+GGG | - | Chr8:90642890-90642909 | None:intergenic | 40.0% |
| ! | CCCAAATTCTCAGTGTCATT+TGG | + | Chr8:90643957-90643976 | MsG0880047773.01.T01:three_prime_UTR | 40.0% |
| !! | AAAACGATAATGGTAACGGG+TGG | + | Chr8:90642192-90642211 | MsG0880047773.01.T01:CDS | 40.0% |
| !! | AAACGATAATGGTAACGGGT+GGG | + | Chr8:90642193-90642212 | MsG0880047773.01.T01:CDS | 40.0% |
| !! | CTCCTCGGACACATTTTAAT+AGG | - | Chr8:90643408-90643427 | None:intergenic | 40.0% |
| !! | CTTTATCCATGTAATGGACC+TGG | + | Chr8:90643053-90643072 | MsG0880047773.01.T01:CDS | 40.0% |
| !! | GTCGTTCAGCTTCTAAAACA+GGG | + | Chr8:90642240-90642259 | MsG0880047773.01.T01:CDS | 40.0% |
| AGATGAAATTCCCTGCGTTG+AGG | + | Chr8:90642596-90642615 | MsG0880047773.01.T01:CDS | 45.0% | |
| AGATTATTGGGTATGCCCCT+TGG | - | Chr8:90642853-90642872 | None:intergenic | 45.0% | |
| AGGTTGTAGTGCCTACAACT+TGG | + | Chr8:90643206-90643225 | MsG0880047773.01.T01:intron | 45.0% | |
| ATTGGGCAAGCAACAATCCA+TGG | + | Chr8:90643636-90643655 | MsG0880047773.01.T01:CDS | 45.0% | |
| CAGGGCAAAATACGGTATAG+AGG | + | Chr8:90643592-90643611 | MsG0880047773.01.T01:intron | 45.0% | |
| CGGTACATCAGTGCTTCAAA+TGG | + | Chr8:90643239-90643258 | MsG0880047773.01.T01:CDS | 45.0% | |
| CTGAGATACTTCAATCCGGT+TGG | + | Chr8:90642796-90642815 | MsG0880047773.01.T01:CDS | 45.0% | |
| CTGCAAGCCATGAATCCTTA+TGG | + | Chr8:90642627-90642646 | MsG0880047773.01.T01:CDS | 45.0% | |
| GAGATACTTCAATCCGGTTG+GGG | + | Chr8:90642798-90642817 | MsG0880047773.01.T01:CDS | 45.0% | |
| GATTGGAAAGAGATGGTGAG+TGG | + | Chr8:90642147-90642166 | MsG0880047773.01.T01:CDS | 45.0% | |
| GCAATCTTCCAACTGCTACT+TGG | - | Chr8:90642891-90642910 | None:intergenic | 45.0% | |
| GCTGCATTTGAAAAGGCTTC+TGG | + | Chr8:90643264-90643283 | MsG0880047773.01.T01:CDS | 45.0% | |
| GGTTGTAGTGCCTACAACTT+GGG | + | Chr8:90643207-90643226 | MsG0880047773.01.T01:intron | 45.0% | |
| GTGCAGAGACCAATGGAATT+GGG | + | Chr8:90643619-90643638 | MsG0880047773.01.T01:CDS | 45.0% | |
| TAGATAGCAGTAGCATCTCC+GGG | - | Chr8:90643432-90643451 | None:intergenic | 45.0% | |
| TCAACGCAGGGAATTTCATC+TGG | - | Chr8:90642597-90642616 | None:intergenic | 45.0% | |
| TCATCCTCTGCAGCAGTTTA+TGG | + | Chr8:90642567-90642586 | MsG0880047773.01.T01:CDS | 45.0% | |
| TGACCATAAACGTTGAGCTC+GGG | - | Chr8:90642913-90642932 | None:intergenic | 45.0% | |
| TGAGATTGGCGAAGATCCAA+GGG | + | Chr8:90642834-90642853 | MsG0880047773.01.T01:CDS | 45.0% | |
| TGTGCAGAGACCAATGGAAT+TGG | + | Chr8:90643618-90643637 | MsG0880047773.01.T01:CDS | 45.0% | |
| TTGACCATAAACTGCTGCAG+AGG | - | Chr8:90642574-90642593 | None:intergenic | 45.0% | |
| TTGCGACAGACAAAATCGGT+AGG | + | Chr8:90643109-90643128 | MsG0880047773.01.T01:intron | 45.0% | |
| TTGGGCAAGCAACAATCCAT+GGG | + | Chr8:90643637-90643656 | MsG0880047773.01.T01:CDS | 45.0% | |
| TTTGACGCTGTGATCCACTT+TGG | + | Chr8:90642423-90642442 | MsG0880047773.01.T01:CDS | 45.0% | |
| ! | AGAGCCTTTTTCTAGGCACA+TGG | - | Chr8:90643870-90643889 | None:intergenic | 45.0% |
| ! | CATAAGGATTCATGGCTTGC+AGG | - | Chr8:90642629-90642648 | None:intergenic | 45.0% |
| ! | TCGTTTTCCTTTCCGACGAT+TGG | - | Chr8:90642179-90642198 | None:intergenic | 45.0% |
| ! | TCTCCAACTCTTGCTTGTTG+CGG | - | Chr8:90642383-90642402 | None:intergenic | 45.0% |
| ! | TGTTGCTTGCCCAATTCCAT+TGG | - | Chr8:90643631-90643650 | None:intergenic | 45.0% |
| !! | AACGATAATGGTAACGGGTG+GGG | + | Chr8:90642194-90642213 | MsG0880047773.01.T01:CDS | 45.0% |
| !! | GGTCGTTCAGCTTCTAAAAC+AGG | + | Chr8:90642239-90642258 | MsG0880047773.01.T01:CDS | 45.0% |
| !! | TTTGAAGCACTGATGTACCG+CGG | - | Chr8:90643239-90643258 | None:intergenic | 45.0% |
| ACCAGCTTGAGCTTGGGTTT+GGG | + | Chr8:90643663-90643682 | MsG0880047773.01.T01:CDS | 50.0% | |
| AGGAGATGTGCAGAGACCAA+TGG | + | Chr8:90643612-90643631 | MsG0880047773.01.T01:CDS | 50.0% | |
| AGTGCCTACAACTTGGGAAC+TGG | + | Chr8:90643213-90643232 | MsG0880047773.01.T01:CDS | 50.0% | |
| ATGGTGAAAGCGGAGGTAGT+TGG | - | Chr8:90642352-90642371 | None:intergenic | 50.0% | |
| ATTTCATTGGAGGAGGGAGG+AGG | + | Chr8:90643507-90643526 | MsG0880047773.01.T01:intron | 50.0% | |
| CATCTGCCAGGTCCATTACA+TGG | - | Chr8:90643062-90643081 | None:intergenic | 50.0% | |
| CGGAGGTAGTTGGAAAGTTG+AGG | - | Chr8:90642342-90642361 | None:intergenic | 50.0% | |
| GAGATTGGCGAAGATCCAAG+GGG | + | Chr8:90642835-90642854 | MsG0880047773.01.T01:CDS | 50.0% | |
| GAGTGGGCAATACCAATCGT+CGG | + | Chr8:90642164-90642183 | MsG0880047773.01.T01:CDS | 50.0% | |
| GGAGATCGACATGGTGAAAG+CGG | - | Chr8:90642362-90642381 | None:intergenic | 50.0% | |
| GGCAATACCAATCGTCGGAA+AGG | + | Chr8:90642169-90642188 | MsG0880047773.01.T01:CDS | 50.0% | |
| GGGGTTCATTGGATCACACA+CGG | + | Chr8:90642218-90642237 | MsG0880047773.01.T01:CDS | 50.0% | |
| GTGAGATTGGCGAAGATCCA+AGG | + | Chr8:90642833-90642852 | MsG0880047773.01.T01:CDS | 50.0% | |
| GTGGATCACAGCGTCAAACT+TGG | - | Chr8:90642421-90642440 | None:intergenic | 50.0% | |
| TACCAGCTTGAGCTTGGGTT+TGG | + | Chr8:90643662-90643681 | MsG0880047773.01.T01:CDS | 50.0% | |
| TCCAAGAAGGAGCCAAACGA+AGG | - | Chr8:90643367-90643386 | None:intergenic | 50.0% | |
| TCTCCGCAACAAGCAAGAGT+TGG | + | Chr8:90642377-90642396 | MsG0880047773.01.T01:CDS | 50.0% | |
| TGGGCAAGCAACAATCCATG+GGG | + | Chr8:90643638-90643657 | MsG0880047773.01.T01:CDS | 50.0% | |
| TTCAAAAGGCAGAGCCAGAG+TGG | + | Chr8:90642761-90642780 | MsG0880047773.01.T01:CDS | 50.0% | |
| TTGCCCGAGCTCAACGTTTA+TGG | + | Chr8:90642907-90642926 | MsG0880047773.01.T01:CDS | 50.0% | |
| ! | AAGGATTCATGGCTTGCAGG+TGG | - | Chr8:90642626-90642645 | None:intergenic | 50.0% |
| ! | TCCTTCGTTTGGCTCCTTCT+TGG | + | Chr8:90643363-90643382 | MsG0880047773.01.T01:intron | 50.0% |
| ! | TTTGGTGGTCTGAAAGCCGT+GGG | + | Chr8:90642441-90642460 | MsG0880047773.01.T01:CDS | 50.0% |
| !! | CATGTAATGGACCTGGCAGA+TGG | + | Chr8:90643060-90643079 | MsG0880047773.01.T01:CDS | 50.0% |
| AAAAGGCAGAGCCAGAGTGG+AGG | + | Chr8:90642764-90642783 | MsG0880047773.01.T01:CDS | 55.0% | |
| AAAATGTGTCCGAGGAGGCC+CGG | + | Chr8:90643411-90643430 | MsG0880047773.01.T01:CDS | 55.0% | |
| ACCGCAGTGCCATCTTTGGT+GGG | - | Chr8:90642943-90642962 | None:intergenic | 55.0% | |
| ACTCACCGCAGTGCCATCTT+TGG | - | Chr8:90642947-90642966 | None:intergenic | 55.0% | |
| AGCTCAAGCTGGTATCCCCA+TGG | - | Chr8:90643656-90643675 | None:intergenic | 55.0% | |
| AGGTGGAAGTCCTCAACGCA+GGG | - | Chr8:90642609-90642628 | None:intergenic | 55.0% | |
| CAACCAAATGGCGAACCCTG+TGG | - | Chr8:90642317-90642336 | None:intergenic | 55.0% | |
| CACAGGGTTCGCCATTTGGT+TGG | + | Chr8:90642315-90642334 | MsG0880047773.01.T01:CDS | 55.0% | |
| CAGCAATGTGACCATCTGCC+AGG | - | Chr8:90643074-90643093 | None:intergenic | 55.0% | |
| CCTGTGGACAGCTTCCATGA+CGG | - | Chr8:90642301-90642320 | None:intergenic | 55.0% | |
| CGGCTTTCAGACCACCAAAG+TGG | - | Chr8:90642440-90642459 | None:intergenic | 55.0% | |
| CGTCATGGAAGCTGTCCACA+GGG | + | Chr8:90642299-90642318 | MsG0880047773.01.T01:CDS | 55.0% | |
| CTCTGCGACACTTTCTCCCA+CGG | - | Chr8:90642460-90642479 | None:intergenic | 55.0% | |
| GACGCTGTGATCCACTTTGG+TGG | + | Chr8:90642426-90642445 | MsG0880047773.01.T01:CDS | 55.0% | |
| GATCGACATGGTGAAAGCGG+AGG | - | Chr8:90642359-90642378 | None:intergenic | 55.0% | |
| GCACATGAGAGCGGTGAGAT+TGG | + | Chr8:90642820-90642839 | MsG0880047773.01.T01:CDS | 55.0% | |
| GCAGAGACGGAATTGGGGAT+TGG | + | Chr8:90642130-90642149 | MsG0880047773.01.T01:CDS | 55.0% | |
| GGGGATACCAGCTTGAGCTT+GGG | + | Chr8:90643657-90643676 | MsG0880047773.01.T01:CDS | 55.0% | |
| TACAACTTGGGAACTGGCCG+CGG | + | Chr8:90643219-90643238 | MsG0880047773.01.T01:CDS | 55.0% | |
| TCCCAAACCCAAGCTCAAGC+TGG | - | Chr8:90643667-90643686 | None:intergenic | 55.0% | |
| TCCCACCAAAGATGGCACTG+CGG | + | Chr8:90642939-90642958 | MsG0880047773.01.T01:CDS | 55.0% | |
| TGGGGATACCAGCTTGAGCT+TGG | + | Chr8:90643656-90643675 | MsG0880047773.01.T01:CDS | 55.0% | |
| TGTCCACAGGGTTCGCCATT+TGG | + | Chr8:90642311-90642330 | MsG0880047773.01.T01:CDS | 55.0% | |
| ! | CTTTGGTGGTCTGAAAGCCG+TGG | + | Chr8:90642440-90642459 | MsG0880047773.01.T01:CDS | 55.0% |
| ! | GCTTGTTGCGGAGATCGACA+TGG | - | Chr8:90642371-90642390 | None:intergenic | 55.0% |
| !! | ATAATGGTAACGGGTGGGGC+GGG | + | Chr8:90642198-90642217 | MsG0880047773.01.T01:CDS | 55.0% |
| !! | GATAATGGTAACGGGTGGGG+CGG | + | Chr8:90642197-90642216 | MsG0880047773.01.T01:CDS | 55.0% |
| CACCGCAGTGCCATCTTTGG+TGG | - | Chr8:90642944-90642963 | None:intergenic | 60.0% | |
| CAGGTGGAAGTCCTCAACGC+AGG | - | Chr8:90642610-90642629 | None:intergenic | 60.0% | |
| CCGTCATGGAAGCTGTCCAC+AGG | + | Chr8:90642298-90642317 | MsG0880047773.01.T01:CDS | 60.0% | |
| GCGGCCAGTTCCCAAGTTGT+AGG | - | Chr8:90643220-90643239 | None:intergenic | 60.0% | |
| !! | TAATGGTAACGGGTGGGGCG+GGG | + | Chr8:90642199-90642218 | MsG0880047773.01.T01:CDS | 60.0% |
| CCGCTCTCATGTGCCCCAAC+CGG | - | Chr8:90642814-90642833 | None:intergenic | 65.0% | |
| CCGGTTGGGGCACATGAGAG+CGG | + | Chr8:90642811-90642830 | MsG0880047773.01.T01:CDS | 65.0% | |
| GTAGCATCTCCGGGCCTCCT+CGG | - | Chr8:90643423-90643442 | None:intergenic | 65.0% | |
| ACGGGTGGGGCGGGGTTCAT+TGG | + | Chr8:90642207-90642226 | MsG0880047773.01.T01:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 90642126 | 90644079 | 90642126 | ID=MsG0880047773.01;Name=MsG0880047773.01 |
| Chr8 | mRNA | 90642126 | 90644079 | 90642126 | ID=MsG0880047773.01.T01;Parent=MsG0880047773.01;Name=MsG0880047773.01.T01;_AED=0.12;_eAED=0.12;_QI=0|1|0.83|1|1|1|6|385|372 |
| Chr8 | exon | 90642126 | 90642659 | 90642126 | ID=MsG0880047773.01.T01:exon:16169;Parent=MsG0880047773.01.T01 |
| Chr8 | exon | 90642733 | 90642960 | 90642733 | ID=MsG0880047773.01.T01:exon:16170;Parent=MsG0880047773.01.T01 |
| Chr8 | exon | 90643045 | 90643126 | 90643045 | ID=MsG0880047773.01.T01:exon:16171;Parent=MsG0880047773.01.T01 |
| Chr8 | exon | 90643208 | 90643290 | 90643208 | ID=MsG0880047773.01.T01:exon:16172;Parent=MsG0880047773.01.T01 |
| Chr8 | exon | 90643399 | 90643490 | 90643399 | ID=MsG0880047773.01.T01:exon:16173;Parent=MsG0880047773.01.T01 |
| Chr8 | exon | 90643595 | 90644079 | 90643595 | ID=MsG0880047773.01.T01:exon:16174;Parent=MsG0880047773.01.T01 |
| Chr8 | CDS | 90642126 | 90642659 | 90642126 | ID=MsG0880047773.01.T01:cds;Parent=MsG0880047773.01.T01 |
| Chr8 | CDS | 90642733 | 90642960 | 90642733 | ID=MsG0880047773.01.T01:cds;Parent=MsG0880047773.01.T01 |
| Chr8 | CDS | 90643045 | 90643126 | 90643045 | ID=MsG0880047773.01.T01:cds;Parent=MsG0880047773.01.T01 |
| Chr8 | CDS | 90643208 | 90643290 | 90643208 | ID=MsG0880047773.01.T01:cds;Parent=MsG0880047773.01.T01 |
| Chr8 | CDS | 90643399 | 90643490 | 90643399 | ID=MsG0880047773.01.T01:cds;Parent=MsG0880047773.01.T01 |
| Chr8 | CDS | 90643595 | 90643694 | 90643595 | ID=MsG0880047773.01.T01:cds;Parent=MsG0880047773.01.T01 |
| Chr8 | three_prime_UTR | 90643695 | 90644079 | 90643695 | ID=MsG0880047773.01.T01:three_prime_utr;Parent=MsG0880047773.01.T01 |
| Gene Sequence |
| Protein sequence |
