AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880042886.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042886.01.T01 MTR_7g118300 60.519 347 126 4 11 355 38 375 6.63e-145 415
MsG0880042886.01.T01 MTR_8g024160 58.551 345 96 3 11 355 31 328 8.11e-138 395
MsG0880042886.01.T01 MTR_7g118320 52.161 347 158 3 11 355 22 362 2.43e-131 380
MsG0880042886.01.T01 MTR_8g068690 53.314 347 154 3 11 355 36 376 2.23e-129 375
MsG0880042886.01.T01 MTR_8g068750 51.873 347 159 3 11 355 37 377 5.34e-129 374
MsG0880042886.01.T01 MTR_0591s0010 52.907 344 154 3 14 355 40 377 2.98e-126 367
MsG0880042886.01.T01 MTR_8g068870 51.312 343 159 3 15 355 27 363 1.77e-124 362
MsG0880042886.01.T01 MTR_6g078850 50.287 348 163 4 11 354 41 382 3.04e-117 348
MsG0880042886.01.T01 MTR_3g092900 48.851 348 166 6 11 355 25 363 7.97e-113 333
MsG0880042886.01.T01 MTR_5g098170 47.647 340 167 4 19 355 32 363 2.45e-105 314
MsG0880042886.01.T01 MTR_8g068730 44.957 347 151 4 11 355 37 345 7.13e-101 301
MsG0880042886.01.T01 MTR_8g068570 49.038 312 124 5 14 323 40 318 9.09e-96 288
MsG0880042886.01.T01 MTR_8g068690 51.190 252 115 3 11 260 36 281 1.79e-85 260
MsG0880042886.01.T01 MTR_3g021430 43.642 346 177 9 16 355 24 357 2.15e-82 255
MsG0880042886.01.T01 MTR_1g036510 43.466 352 176 11 15 355 45 384 1.77e-81 253
MsG0880042886.01.T01 MTR_7g011990 42.466 365 185 11 2 355 17 367 2.35e-80 250
MsG0880042886.01.T01 MTR_7g011900 41.954 348 186 7 14 355 33 370 3.48e-80 249
MsG0880042886.01.T01 MTR_7g012070 43.343 353 183 8 12 355 31 375 3.57e-79 247
MsG0880042886.01.T01 MTR_7g012020 41.209 364 194 8 2 355 16 369 4.61e-79 246
MsG0880042886.01.T01 MTR_1g036490 43.220 354 174 12 15 355 31 370 5.17e-79 246
MsG0880042886.01.T01 MTR_7g012090 43.020 351 183 7 14 355 33 375 1.09e-76 241
MsG0880042886.01.T01 MTR_1g036460 40.909 352 185 11 15 355 31 370 9.50e-76 238
MsG0880042886.01.T01 MTR_3g021440 41.954 348 180 10 16 355 37 370 5.80e-75 236
MsG0880042886.01.T01 MTR_1g096310 41.525 354 185 10 12 355 31 372 7.07e-75 236
MsG0880042886.01.T01 MTR_7g012040 40.385 364 196 9 2 355 16 368 1.09e-73 233
MsG0880042886.01.T01 MTR_8g068600 47.863 234 114 3 27 258 27 254 8.30e-71 223
MsG0880042886.01.T01 MTR_2g055940 39.714 350 190 10 14 355 27 363 1.98e-68 219
MsG0880042886.01.T01 MTR_8g068740 42.586 263 111 4 11 271 37 261 2.29e-67 214
MsG0880042886.01.T01 MTR_0017s0100 36.533 323 184 9 20 336 42 349 5.29e-58 192
MsG0880042886.01.T01 MTR_2g072790 32.754 345 214 7 16 355 23 354 4.08e-56 187
MsG0880042886.01.T01 MTR_0079s0070 34.897 341 201 8 20 354 8 333 1.55e-55 185
MsG0880042886.01.T01 MTR_4g038440 34.897 341 201 8 20 354 42 367 3.85e-55 185
MsG0880042886.01.T01 MTR_1g050220 35.905 337 155 10 15 346 14 294 6.58e-53 177
MsG0880042886.01.T01 MTR_7g012020 40.755 265 139 6 2 257 16 271 4.84e-52 175
MsG0880042886.01.T01 MTR_1g036510 41.600 250 130 7 15 257 45 285 1.89e-50 171
MsG0880042886.01.T01 MTR_3g096050 33.526 346 205 10 19 355 29 358 2.61e-50 172
MsG0880042886.01.T01 MTR_3g083620 32.919 322 196 9 22 339 40 345 1.26e-48 167
MsG0880042886.01.T01 MTR_3g096070 33.333 300 158 8 43 336 53 316 4.92e-45 157
MsG0880042886.01.T01 MTR_5g074680 31.339 351 222 11 10 354 22 359 5.02e-45 158
MsG0880042886.01.T01 MTR_7g012020 39.749 239 131 5 2 231 16 250 8.53e-45 154
MsG0880042886.01.T01 MTR_5g074580 33.239 355 200 14 8 340 6 345 2.47e-44 156
MsG0880042886.01.T01 MTR_1g076940 30.792 341 219 8 20 354 31 360 5.26e-44 155
MsG0880042886.01.T01 MTR_5g074600 32.249 338 210 11 10 341 21 345 4.60e-43 153
MsG0880042886.01.T01 MTR_7g024520 31.268 339 212 8 10 345 20 340 9.66e-43 152
MsG0880042886.01.T01 MTR_1g036510 39.111 225 126 6 15 232 45 265 3.10e-41 145
MsG0880042886.01.T01 MTR_4g079160 32.486 354 217 10 7 354 17 354 4.53e-41 147
MsG0880042886.01.T01 MTR_7g014570 32.132 333 198 11 17 340 24 337 8.55e-41 147
MsG0880042886.01.T01 MTR_7g024500 29.499 339 218 8 10 345 20 340 1.63e-40 146
MsG0880042886.01.T01 MTR_5g074540 29.326 341 202 9 21 354 32 340 1.74e-38 140
MsG0880042886.01.T01 MTR_7g014510 32.229 332 209 9 20 346 31 351 4.92e-38 139
MsG0880042886.01.T01 MTR_8g068760 58.586 99 41 0 257 355 135 233 2.77e-37 134
MsG0880042886.01.T01 MTR_8g068760 40.336 119 68 2 11 127 24 141 2.24e-21 91.7
MsG0880042886.01.T01 MTR_8g068620 54.701 117 48 1 144 260 2 113 4.06e-37 130
MsG0880042886.01.T01 MTR_4g033015 33.432 338 208 8 10 340 21 348 1.61e-36 135
MsG0880042886.01.T01 MTR_4g088340 29.310 348 220 10 15 354 3 332 3.30e-36 134
MsG0880042886.01.T01 MTR_4g033200 31.953 338 213 8 10 340 21 348 8.66e-36 134
MsG0880042886.01.T01 MTR_5g074610 28.940 349 204 9 10 354 17 325 1.77e-35 132
MsG0880042886.01.T01 MTR_4g088345 27.731 357 230 8 7 354 18 355 3.14e-35 132
MsG0880042886.01.T01 MTR_4g033150 31.420 331 210 8 17 340 28 348 9.66e-35 131
MsG0880042886.01.T01 MTR_4g088200 31.065 338 210 10 10 340 25 346 2.42e-34 130
MsG0880042886.01.T01 MTR_4g038440 33.884 242 143 5 20 257 42 270 9.26e-34 126
MsG0880042886.01.T01 MTR_4g088190 32.249 338 209 8 10 340 25 349 1.69e-32 125
MsG0880042886.01.T01 MTR_8g068580 54.717 106 41 1 257 355 28 133 4.89e-31 114
MsG0880042886.01.T01 MTR_4g033170 29.275 345 207 9 10 340 21 342 4.00e-30 118
MsG0880042886.01.T01 MTR_3g096050 31.967 244 148 7 19 257 29 259 2.66e-29 114
MsG0880042886.01.T01 MTR_4g033085 29.412 323 192 8 10 318 21 321 2.18e-28 113
MsG0880042886.01.T01 MTR_1g076930 28.926 242 158 7 19 257 7 237 4.26e-26 105
MsG0880042886.01.T01 MTR_8g068590 41.739 115 64 2 15 127 20 133 5.07e-20 85.9
MsG0880042886.01.T01 MTR_7g118310 42.991 107 45 2 147 237 1 107 3.69e-16 73.9
MsG0880042886.01.T01 MTR_0794s0020 27.570 214 147 5 16 225 27 236 7.92e-13 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042886.01.T01 AT5G54160 50.148 337 150 6 11 342 25 348 1.04e-109 325
MsG0880042886.01.T01 AT1G77520 43.182 352 188 4 11 355 35 381 3.34e-91 278
MsG0880042886.01.T01 AT1G33030 40.741 351 188 8 12 355 13 350 2.51e-89 272
MsG0880042886.01.T01 AT1G77530 44.034 352 185 4 11 355 35 381 4.78e-85 262
MsG0880042886.01.T01 AT1G51990 40.762 341 189 7 19 354 29 361 1.92e-80 250
MsG0880042886.01.T01 AT1G51990 40.469 341 190 7 19 354 29 361 9.08e-79 246
MsG0880042886.01.T01 AT1G63140 41.389 360 197 7 4 355 28 381 2.58e-78 245
MsG0880042886.01.T01 AT1G63140 42.210 353 190 7 11 355 55 401 3.10e-78 246
MsG0880042886.01.T01 AT5G53810 41.908 346 186 7 19 355 39 378 1.31e-77 243
MsG0880042886.01.T01 AT1G21100 39.266 354 195 8 11 355 31 373 4.75e-71 226
MsG0880042886.01.T01 AT1G21130 39.437 355 193 10 11 355 31 373 2.74e-70 224
MsG0880042886.01.T01 AT1G21110 39.437 355 193 10 11 355 31 373 4.21e-70 224
MsG0880042886.01.T01 AT1G76790 39.377 353 184 9 18 355 28 365 1.90e-69 222
MsG0880042886.01.T01 AT1G21120 38.701 354 197 9 11 355 31 373 2.03e-68 219
MsG0880042886.01.T01 AT1G21120 38.701 354 197 9 11 355 79 421 9.21e-68 219
MsG0880042886.01.T01 AT1G33030 40.800 250 134 5 12 257 13 252 2.13e-58 190
MsG0880042886.01.T01 AT1G33030 40.800 250 134 5 12 257 13 252 2.75e-58 190
MsG0880042886.01.T01 AT3G53140 34.181 354 202 10 16 355 23 359 6.35e-58 192
MsG0880042886.01.T01 AT5G37170 37.346 324 159 8 40 355 47 334 9.29e-58 191
MsG0880042886.01.T01 AT1G62900 47.143 210 105 3 147 355 1 205 4.22e-55 179
MsG0880042886.01.T01 AT1G63140 42.520 254 133 6 11 257 55 302 5.22e-52 175
MsG0880042886.01.T01 AT5G37170 44.335 203 106 3 155 355 37 234 9.78e-51 169
MsG0880042886.01.T01 AT5G37170 44.503 191 99 3 167 355 1 186 9.65e-48 160
MsG0880042886.01.T01 AT1G77530 41.739 230 128 2 11 234 35 264 1.02e-46 160
MsG0880042886.01.T01 AT1G63140 41.553 219 120 4 15 226 59 276 5.69e-41 145
MsG0880042886.01.T01 AT1G21130 37.891 256 138 9 11 257 31 274 1.07e-39 142
MsG0880042886.01.T01 AT4G35160 30.211 331 205 8 21 337 45 363 5.43e-39 142
MsG0880042886.01.T01 AT4G35150 37.198 207 114 5 141 337 106 306 3.32e-37 136

Find 76 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCGAACCTGCTTTAAAAT+TGG 0.120021 8:-15430829 MsG0880042886.01.T01:CDS
AATTATAGGTATTGTATTAA+AGG 0.192913 8:-15429955 MsG0880042886.01.T01:intron
AGATGTGACGTTATAGTTAT+TGG 0.225558 8:+15431139 None:intergenic
AGCAATAACTTTGCCATCAT+TGG 0.228961 8:+15429276 None:intergenic
GGGTTTGGACAAGGTCTTAA+TGG 0.265671 8:-15430808 MsG0880042886.01.T01:CDS
TCGGTTGTTTCTCTAGCAAT+TGG 0.296784 8:-15429090 MsG0880042886.01.T01:CDS
TCAAAATGAATTTATAGAAT+TGG 0.314750 8:-15429146 MsG0880042886.01.T01:CDS
TTGTATTAAAGGAGCAATAT+TGG 0.322289 8:-15429944 MsG0880042886.01.T01:CDS
GCAAGACTATATAGTATCTT+AGG 0.324150 8:+15430897 None:intergenic
TTTCTCTAGCAATTGGGTTA+TGG 0.333123 8:-15429083 MsG0880042886.01.T01:CDS
ACCTGCTTTAAAATTGGGTT+TGG 0.337495 8:-15430823 MsG0880042886.01.T01:CDS
AAGAACTCTCTTCATGATAA+TGG 0.347670 8:+15429813 None:intergenic
TGTTAAGGTAATAATGTTGT+AGG 0.349213 8:-15429542 MsG0880042886.01.T01:intron
CTGCTGAATACTTTGTCCTT+GGG 0.352987 8:-15430869 MsG0880042886.01.T01:CDS
ATACCATTCAATAGGGCTTA+TGG 0.354562 8:-15429913 MsG0880042886.01.T01:CDS
TTCAGTGGATACTTCACAAT+TGG 0.358152 8:-15429348 MsG0880042886.01.T01:intron
TTCGAACCTGCTTTAAAATT+GGG 0.360905 8:-15430828 MsG0880042886.01.T01:CDS
TTTGATACCTTTCTCTACTT+TGG 0.368939 8:+15431055 None:intergenic
TGATGGCAAAGTTATTGCTT+TGG 0.371752 8:-15429272 MsG0880042886.01.T01:CDS
GAATTTATAGAATTGGCATT+AGG 0.380239 8:-15429139 MsG0880042886.01.T01:CDS
GCTGCTGAATACTTTGTCCT+TGG 0.382354 8:-15430870 MsG0880042886.01.T01:CDS
ATTGTATTCTCTGGCAAAAC+AGG 0.383773 8:+15429238 None:intergenic
AAGGAGGTATACCATTCAAT+AGG 0.389368 8:-15429921 MsG0880042886.01.T01:CDS
GAGGACATAGCTGTTAAGAT+AGG 0.390836 8:-15431023 MsG0880042886.01.T01:CDS
GTGGATGTTGGTGGCGGTCT+TGG 0.401729 8:-15429754 MsG0880042886.01.T01:CDS
ACACCTGCATACTCATATAT+AGG 0.405213 8:+15429886 None:intergenic
TTGGAAATCATTGTATTCTC+TGG 0.412295 8:+15429229 None:intergenic
CGGTTGTTTCTCTAGCAATT+GGG 0.419996 8:-15429089 MsG0880042886.01.T01:CDS
TGAGCACATCAACACATTAG+TGG 0.423438 8:-15429773 MsG0880042886.01.T01:CDS
TAGTTATTGGTATCAATAGA+AGG 0.434918 8:+15431152 None:intergenic
GCATTAGGATCTGGATTTAG+TGG 0.441483 8:-15429124 MsG0880042886.01.T01:CDS
ATAGAATTGGCATTAGGATC+TGG 0.442605 8:-15429133 MsG0880042886.01.T01:CDS
GTTAAATTAGCAATAGAGCT+TGG 0.451999 8:-15431095 MsG0880042886.01.T01:CDS
ATTGCTAATTTAACTGCGAA+AGG 0.466394 8:+15431104 None:intergenic
GCAATAACTTTGCCATCATT+GGG 0.468216 8:+15429277 None:intergenic
AGGACAAAGTATTCAGCAGC+TGG 0.472859 8:+15430873 None:intergenic
TTCCAAGCTTGGTTCTAAAG+AGG 0.478752 8:-15429212 MsG0880042886.01.T01:CDS
AGTATGCAGGTGTGAATCCC+AGG 0.481568 8:-15429876 MsG0880042886.01.T01:CDS
AATACAATGATTTCCAAGCT+TGG 0.485049 8:-15429223 MsG0880042886.01.T01:CDS
GAAAATGCTCAAACCTATCC+AGG 0.489130 8:-15429658 MsG0880042886.01.T01:intron
ACAAGGTCTTAATGGAATCA+TGG 0.498121 8:-15430800 MsG0880042886.01.T01:intron
GTCCTCTTTAGAACCAAGCT+TGG 0.498922 8:+15429210 None:intergenic
ATTGAAAATATCATTGAACC+TGG 0.505485 8:+15429858 None:intergenic
TTGCTAATTTAACTGCGAAA+GGG 0.512293 8:+15431105 None:intergenic
AGGAGGTATACCATTCAATA+GGG 0.513090 8:-15429920 MsG0880042886.01.T01:CDS
TTTAGTGGCATCAAATTCAT+CGG 0.533709 8:-15429109 MsG0880042886.01.T01:CDS
TTTAAAATTGGGTTTGGACA+AGG 0.533722 8:-15430817 MsG0880042886.01.T01:CDS
ACAAAAGTATATACCTGGAT+AGG 0.539624 8:+15429645 None:intergenic
ATGCCATAAGCCCTATTGAA+TGG 0.545575 8:+15429910 None:intergenic
ATCTTAGCCAAAGTAGAGAA+AGG 0.553976 8:-15431062 MsG0880042886.01.T01:CDS
TATAAAGCTACTCCCAATGA+TGG 0.555558 8:-15429289 MsG0880042886.01.T01:CDS
AGAGTTCTTGAATGCTACAA+TGG 0.561133 8:-15429799 MsG0880042886.01.T01:CDS
ATTAAAGGAGCAATATTGGA+AGG 0.569274 8:-15429940 MsG0880042886.01.T01:CDS
GGACAAAGTATTCAGCAGCT+GGG 0.570612 8:+15430874 None:intergenic
TGCTGAATACTTTGTCCTTG+GGG 0.572681 8:-15430868 MsG0880042886.01.T01:CDS
ATGTTTGAGAGTGTTCCTAA+AGG 0.578784 8:-15429497 MsG0880042886.01.T01:CDS
TCCAGAAGGACACAAAATGT+TGG 0.579378 8:-15430997 MsG0880042886.01.T01:CDS
TTGAAAATATCATTGAACCT+GGG 0.582063 8:+15429859 None:intergenic
ATCAACACATTAGTGGATGT+TGG 0.583422 8:-15429766 MsG0880042886.01.T01:CDS
AGGACATAGCTGTTAAGATA+GGG 0.586881 8:-15431022 MsG0880042886.01.T01:CDS
GTAGGTATCACACACGTGGA+AGG 0.615717 8:-15429524 MsG0880042886.01.T01:CDS
ATGATGACTCTACAAGGAGG+AGG 0.617647 8:-15429181 MsG0880042886.01.T01:CDS
TTCTACATGATGACTCTACA+AGG 0.622076 8:-15429187 MsG0880042886.01.T01:CDS
TCAAAACATTCTCATATACA+TGG 0.624418 8:-15429709 MsG0880042886.01.T01:CDS
ACATTAGTGGATGTTGGTGG+CGG 0.625301 8:-15429760 MsG0880042886.01.T01:CDS
AAAGGAGCAATATTGGAAGG+AGG 0.627685 8:-15429937 MsG0880042886.01.T01:CDS
AACACATTAGTGGATGTTGG+TGG 0.628365 8:-15429763 MsG0880042886.01.T01:CDS
AACTCTCTTCATGATAATGG+TGG 0.630189 8:+15429816 None:intergenic
TAACCAACAACCTCAAAAGA+CGG 0.635221 8:+15430973 None:intergenic
AGGTATCAAACTTTCAGCAG+AGG 0.636174 8:-15431042 MsG0880042886.01.T01:CDS
GACAAAGTATTCAGCAGCTG+GGG 0.637683 8:+15430875 None:intergenic
ATGCCTATATATGAGTATGC+AGG 0.643840 8:-15429889 MsG0880042886.01.T01:CDS
ACAAATCATCATTATCCCCA+AGG 0.646018 8:+15430853 None:intergenic
GTTAAGATAGGGTCTCCAGA+AGG 0.671995 8:-15431011 MsG0880042886.01.T01:CDS
TGTTGTAGGTATCACACACG+TGG 0.711280 8:-15429528 MsG0880042886.01.T01:CDS
TACATGATGACTCTACAAGG+AGG 0.759954 8:-15429184 MsG0880042886.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAGAAAAAAAAATACTT+CGG + Chr8:15429767-15429786 None:intergenic 10.0%
!!! TACAATATTGATTAAATTAT+AGG - Chr8:15430258-15430277 MsG0880042886.01.T01:intron 10.0%
!! AAAAATTGAAAAGTAAAGTA+TGG + Chr8:15430044-15430063 None:intergenic 15.0%
!! TCAAAATGAATTTATAGAAT+TGG - Chr8:15431081-15431100 MsG0880042886.01.T01:CDS 15.0%
!!! AATTATAGGTATTGTATTAA+AGG - Chr8:15430272-15430291 MsG0880042886.01.T01:intron 15.0%
!! GTTCATCATAATAATAGAAA+TGG + Chr8:15429915-15429934 None:intergenic 20.0%
!! TCTATTATTATGATGAACTA+GGG - Chr8:15429917-15429936 MsG0880042886.01.T01:CDS 20.0%
!! TTCAATCCTATAAATATGTA+GGG + Chr8:15429582-15429601 None:intergenic 20.0%
!! TTCTATTATTATGATGAACT+AGG - Chr8:15429916-15429935 MsG0880042886.01.T01:CDS 20.0%
!! TTTCAATCCTATAAATATGT+AGG + Chr8:15429583-15429602 None:intergenic 20.0%
!!! AATATAATTCATGCATTTTC+AGG - Chr8:15430775-15430794 MsG0880042886.01.T01:intron 20.0%
!!! GATATTTTCAATAAAGCTAT+GGG - Chr8:15430380-15430399 MsG0880042886.01.T01:intron 20.0%
!!! GATTTTTTTTTTCTTCATAC+AGG - Chr8:15429475-15429494 MsG0880042886.01.T01:intron 20.0%
!!! TGATATTTTCAATAAAGCTA+TGG - Chr8:15430379-15430398 MsG0880042886.01.T01:intron 20.0%
! ATTGAAAATATCATTGAACC+TGG + Chr8:15430372-15430391 None:intergenic 25.0%
! GAATTTATAGAATTGGCATT+AGG - Chr8:15431088-15431107 MsG0880042886.01.T01:CDS 25.0%
! GGTAATATTGTAAACTGAAT+TGG + Chr8:15429978-15429997 None:intergenic 25.0%
! TAGTTATTGGTATCAATAGA+AGG + Chr8:15429078-15429097 None:intergenic 25.0%
! TATATTCACCTTCAGAAAAA+TGG + Chr8:15430761-15430780 None:intergenic 25.0%
! TCAAAACATTCTCATATACA+TGG - Chr8:15430518-15430537 MsG0880042886.01.T01:intron 25.0%
! TGTTAAGGTAATAATGTTGT+AGG - Chr8:15430685-15430704 MsG0880042886.01.T01:intron 25.0%
! TTGAAAATATCATTGAACCT+GGG + Chr8:15430371-15430390 None:intergenic 25.0%
! TTGTATTAAAGGAGCAATAT+TGG - Chr8:15430283-15430302 MsG0880042886.01.T01:intron 25.0%
!! TTAGTAGGTATAATTTGTGA+TGG + Chr8:15430091-15430110 None:intergenic 25.0%
!!! AAGCTACGAATAATTTGTTA+AGG - Chr8:15430670-15430689 MsG0880042886.01.T01:intron 25.0%
!!! AGATACTTCTTTTAAAACCA+TGG - Chr8:15430630-15430649 MsG0880042886.01.T01:intron 25.0%
AAGAACTCTCTTCATGATAA+TGG + Chr8:15430417-15430436 None:intergenic 30.0%
AATACAATGATTTCCAAGCT+TGG - Chr8:15431004-15431023 MsG0880042886.01.T01:CDS 30.0%
AGATGTGACGTTATAGTTAT+TGG + Chr8:15429091-15429110 None:intergenic 30.0%
ATTAAAGGAGCAATATTGGA+AGG - Chr8:15430287-15430306 MsG0880042886.01.T01:intron 30.0%
ATTGCTAATTTAACTGCGAA+AGG + Chr8:15429126-15429145 None:intergenic 30.0%
CAAACTCCCTACATATTTAT+AGG - Chr8:15429573-15429592 MsG0880042886.01.T01:intron 30.0%
CACTATAAATGAGCAAAACT+TGG + Chr8:15429606-15429625 None:intergenic 30.0%
CCACACATAATAAATATCCA+TGG + Chr8:15430650-15430669 None:intergenic 30.0%
CCATGGATATTTATTATGTG+TGG - Chr8:15430647-15430666 MsG0880042886.01.T01:intron 30.0%
GCAAGACTATATAGTATCTT+AGG + Chr8:15429333-15429352 None:intergenic 30.0%
GTTAAATTAGCAATAGAGCT+TGG - Chr8:15429132-15429151 MsG0880042886.01.T01:CDS 30.0%
GTTAGAACAATAAGTAACAC+AGG - Chr8:15429787-15429806 MsG0880042886.01.T01:CDS 30.0%
TAACTCTCGTTCAAAACATT+AGG - Chr8:15429643-15429662 MsG0880042886.01.T01:intron 30.0%
TATATGCAAGACACTAAAGA+AGG + Chr8:15430017-15430036 None:intergenic 30.0%
TTGCTAATTTAACTGCGAAA+GGG + Chr8:15429125-15429144 None:intergenic 30.0%
TTGGAAATCATTGTATTCTC+TGG + Chr8:15431001-15431020 None:intergenic 30.0%
TTTAGTGGCATCAAATTCAT+CGG - Chr8:15431118-15431137 MsG0880042886.01.T01:CDS 30.0%
TTTGATACCTTTCTCTACTT+TGG + Chr8:15429175-15429194 None:intergenic 30.0%
! ACAAAAGTATATACCTGGAT+AGG + Chr8:15430585-15430604 None:intergenic 30.0%
! ATAGCACAAAAGTATATACC+TGG + Chr8:15430590-15430609 None:intergenic 30.0%
! CAATATTTGTTAACGCAGTT+CGG - Chr8:15429848-15429867 MsG0880042886.01.T01:CDS 30.0%
! TTTAAAATTGGGTTTGGACA+AGG - Chr8:15429410-15429429 MsG0880042886.01.T01:intron 30.0%
!! TTCGAACCTGCTTTAAAATT+GGG - Chr8:15429399-15429418 MsG0880042886.01.T01:intron 30.0%
ACAAATCATCATTATCCCCA+AGG + Chr8:15429377-15429396 None:intergenic 35.0%
ACAAGGTCTTAATGGAATCA+TGG - Chr8:15429427-15429446 MsG0880042886.01.T01:intron 35.0%
ACACCTGCATACTCATATAT+AGG + Chr8:15430344-15430363 None:intergenic 35.0%
AGAAAAATGGCATCTCCTTT+AGG + Chr8:15430748-15430767 None:intergenic 35.0%
AGAGTTCTTGAATGCTACAA+TGG - Chr8:15430428-15430447 MsG0880042886.01.T01:intron 35.0%
AGCAATAACTTTGCCATCAT+TGG + Chr8:15430954-15430973 None:intergenic 35.0%
AGGACATAGCTGTTAAGATA+GGG - Chr8:15429205-15429224 MsG0880042886.01.T01:CDS 35.0%
ATACCATTCAATAGGGCTTA+TGG - Chr8:15430314-15430333 MsG0880042886.01.T01:intron 35.0%
ATAGAATTGGCATTAGGATC+TGG - Chr8:15431094-15431113 MsG0880042886.01.T01:CDS 35.0%
ATCTTAGCCAAAGTAGAGAA+AGG - Chr8:15429165-15429184 MsG0880042886.01.T01:CDS 35.0%
ATGCCTATATATGAGTATGC+AGG - Chr8:15430338-15430357 MsG0880042886.01.T01:intron 35.0%
ATTGTATTCTCTGGCAAAAC+AGG + Chr8:15430992-15431011 None:intergenic 35.0%
GCAATAACTTTGCCATCATT+GGG + Chr8:15430953-15430972 None:intergenic 35.0%
TAACCAACAACCTCAAAAGA+CGG + Chr8:15429257-15429276 None:intergenic 35.0%
TATAAAGCTACTCCCAATGA+TGG - Chr8:15430938-15430957 MsG0880042886.01.T01:CDS 35.0%
TGATGGCAAAGTTATTGCTT+TGG - Chr8:15430955-15430974 MsG0880042886.01.T01:CDS 35.0%
TTCAGTGGATACTTCACAAT+TGG - Chr8:15430879-15430898 MsG0880042886.01.T01:CDS 35.0%
TTCTACATGATGACTCTACA+AGG - Chr8:15431040-15431059 MsG0880042886.01.T01:CDS 35.0%
TTTCTCTAGCAATTGGGTTA+TGG - Chr8:15431144-15431163 MsG0880042886.01.T01:CDS 35.0%
! AAGGAGGTATACCATTCAAT+AGG - Chr8:15430306-15430325 MsG0880042886.01.T01:intron 35.0%
! AGGAGGTATACCATTCAATA+GGG - Chr8:15430307-15430326 MsG0880042886.01.T01:intron 35.0%
! ATCAACACATTAGTGGATGT+TGG - Chr8:15430461-15430480 MsG0880042886.01.T01:intron 35.0%
! ATGATGAACTAGGGTTTTCA+GGG - Chr8:15429926-15429945 MsG0880042886.01.T01:CDS 35.0%
! CATTTTCTATGACATGAGGT+AGG + Chr8:15430556-15430575 None:intergenic 35.0%
! TATGATGAACTAGGGTTTTC+AGG - Chr8:15429925-15429944 MsG0880042886.01.T01:CDS 35.0%
! TGAGCATTTTCTATGACATG+AGG + Chr8:15430560-15430579 None:intergenic 35.0%
! TTTTGTGCCAAAACTTTCAG+TGG - Chr8:15430864-15430883 MsG0880042886.01.T01:CDS 35.0%
!! AACTCTCTTCATGATAATGG+TGG + Chr8:15430414-15430433 None:intergenic 35.0%
!! ACCTGCTTTAAAATTGGGTT+TGG - Chr8:15429404-15429423 MsG0880042886.01.T01:intron 35.0%
!! ATGTTTGAGAGTGTTCCTAA+AGG - Chr8:15430730-15430749 MsG0880042886.01.T01:intron 35.0%
!! GAAGTATCCACTGAAAGTTT+TGG + Chr8:15430874-15430893 None:intergenic 35.0%
!! GTTCGAACCTGCTTTAAAAT+TGG - Chr8:15429398-15429417 MsG0880042886.01.T01:intron 35.0%
!!! TCCAAACCCAATTTTAAAGC+AGG + Chr8:15429408-15429427 None:intergenic 35.0%
AAAGGAGCAATATTGGAAGG+AGG - Chr8:15430290-15430309 MsG0880042886.01.T01:intron 40.0%
AAGACACTAAAGAAGGCAAG+GGG + Chr8:15430010-15430029 None:intergenic 40.0%
AGGTATCAAACTTTCAGCAG+AGG - Chr8:15429185-15429204 MsG0880042886.01.T01:CDS 40.0%
ATGCCATAAGCCCTATTGAA+TGG + Chr8:15430320-15430339 None:intergenic 40.0%
CAAGACACTAAAGAAGGCAA+GGG + Chr8:15430011-15430030 None:intergenic 40.0%
CTGCTGAATACTTTGTCCTT+GGG - Chr8:15429358-15429377 MsG0880042886.01.T01:intron 40.0%
GAAAATGCTCAAACCTATCC+AGG - Chr8:15430569-15430588 MsG0880042886.01.T01:intron 40.0%
GAGGACATAGCTGTTAAGAT+AGG - Chr8:15429204-15429223 MsG0880042886.01.T01:CDS 40.0%
GCATTAGGATCTGGATTTAG+TGG - Chr8:15431103-15431122 MsG0880042886.01.T01:CDS 40.0%
TACATGATGACTCTACAAGG+AGG - Chr8:15431043-15431062 MsG0880042886.01.T01:CDS 40.0%
TCCAGAAGGACACAAAATGT+TGG - Chr8:15429230-15429249 MsG0880042886.01.T01:CDS 40.0%
TGAGCACATCAACACATTAG+TGG - Chr8:15430454-15430473 MsG0880042886.01.T01:intron 40.0%
TGCTGAATACTTTGTCCTTG+GGG - Chr8:15429359-15429378 MsG0880042886.01.T01:intron 40.0%
! AAATGTTGGACCGTCTTTTG+AGG - Chr8:15429244-15429263 MsG0880042886.01.T01:CDS 40.0%
! AACACATTAGTGGATGTTGG+TGG - Chr8:15430464-15430483 MsG0880042886.01.T01:intron 40.0%
! TCCAACATTTTGTGTCCTTC+TGG + Chr8:15429234-15429253 None:intergenic 40.0%
!! CGGTTGTTTCTCTAGCAATT+GGG - Chr8:15431138-15431157 MsG0880042886.01.T01:CDS 40.0%
!! TCGGTTGTTTCTCTAGCAAT+TGG - Chr8:15431137-15431156 MsG0880042886.01.T01:CDS 40.0%
!! TTCCAAGCTTGGTTCTAAAG+AGG - Chr8:15431015-15431034 MsG0880042886.01.T01:CDS 40.0%
!!! AGGAGATGCCATTTTTCTGA+AGG - Chr8:15430750-15430769 MsG0880042886.01.T01:intron 40.0%
AAGAAGGCAAGGGGCAATTT+AGG + Chr8:15430001-15430020 None:intergenic 45.0%
AGAAGGCAAGGGGCAATTTA+GGG + Chr8:15430000-15430019 None:intergenic 45.0%
ATGATGACTCTACAAGGAGG+AGG - Chr8:15431046-15431065 MsG0880042886.01.T01:CDS 45.0%
GCAAGACACTAAAGAAGGCA+AGG + Chr8:15430012-15430031 None:intergenic 45.0%
GCTGCTGAATACTTTGTCCT+TGG - Chr8:15429357-15429376 MsG0880042886.01.T01:intron 45.0%
GGGTTTGGACAAGGTCTTAA+TGG - Chr8:15429419-15429438 MsG0880042886.01.T01:intron 45.0%
GTTAAGATAGGGTCTCCAGA+AGG - Chr8:15429216-15429235 MsG0880042886.01.T01:CDS 45.0%
TAACTGCTCTATAGTCGCAG+AGG + Chr8:15429887-15429906 None:intergenic 45.0%
TGTTGTAGGTATCACACACG+TGG - Chr8:15430699-15430718 MsG0880042886.01.T01:intron 45.0%
! ACATTAGTGGATGTTGGTGG+CGG - Chr8:15430467-15430486 MsG0880042886.01.T01:intron 45.0%
! AGGACAAAGTATTCAGCAGC+TGG + Chr8:15429357-15429376 None:intergenic 45.0%
! GACAAAGTATTCAGCAGCTG+GGG + Chr8:15429355-15429374 None:intergenic 45.0%
! GGACAAAGTATTCAGCAGCT+GGG + Chr8:15429356-15429375 None:intergenic 45.0%
!! GTCCTCTTTAGAACCAAGCT+TGG + Chr8:15431020-15431039 None:intergenic 45.0%
!! ATATATATATATATATTAGT+AGG + Chr8:15430106-15430125 None:intergenic 5.0%
!! ATTAATATGATTTATTAATT+AGG - Chr8:15430832-15430851 MsG0880042886.01.T01:CDS 5.0%
AGTATGCAGGTGTGAATCCC+AGG - Chr8:15430351-15430370 MsG0880042886.01.T01:intron 50.0%
GAAGGCAAGGGGCAATTTAG+GGG + Chr8:15429999-15430018 None:intergenic 50.0%
GTAGGTATCACACACGTGGA+AGG - Chr8:15430703-15430722 MsG0880042886.01.T01:intron 50.0%
TGCTCTATAGTCGCAGAGGT+AGG + Chr8:15429883-15429902 None:intergenic 50.0%
!!! GGACCGTCTTTTGAGGTTGT+TGG - Chr8:15429251-15429270 MsG0880042886.01.T01:CDS 50.0%
GTCGCAGAGGTAGGCACAAT+TGG + Chr8:15429874-15429893 None:intergenic 55.0%
!! GTGGATGTTGGTGGCGGTCT+TGG - Chr8:15430473-15430492 MsG0880042886.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 15429069 15431180 15429069 ID=MsG0880042886.01;Name=MsG0880042886.01
Chr8 mRNA 15429069 15431180 15429069 ID=MsG0880042886.01.T01;Parent=MsG0880042886.01;Name=MsG0880042886.01.T01;_AED=0.17;_eAED=0.18;_QI=0|0|0|1|1|1|4|0|355
Chr8 exon 15430801 15431180 15430801 ID=MsG0880042886.01.T01:exon:572;Parent=MsG0880042886.01.T01
Chr8 exon 15429659 15429969 15429659 ID=MsG0880042886.01.T01:exon:571;Parent=MsG0880042886.01.T01
Chr8 exon 15429478 15429557 15429478 ID=MsG0880042886.01.T01:exon:570;Parent=MsG0880042886.01.T01
Chr8 exon 15429069 15429365 15429069 ID=MsG0880042886.01.T01:exon:569;Parent=MsG0880042886.01.T01
Chr8 CDS 15430801 15431180 15430801 ID=MsG0880042886.01.T01:cds;Parent=MsG0880042886.01.T01
Chr8 CDS 15429659 15429969 15429659 ID=MsG0880042886.01.T01:cds;Parent=MsG0880042886.01.T01
Chr8 CDS 15429478 15429557 15429478 ID=MsG0880042886.01.T01:cds;Parent=MsG0880042886.01.T01
Chr8 CDS 15429069 15429365 15429069 ID=MsG0880042886.01.T01:cds;Parent=MsG0880042886.01.T01
Gene Sequence

>MsG0880042886.01.T01

ATGGCTCCTTCTATTGATACCAATAACTATAACGTCACATCTTCTATCATTTTCCCTTTCGCAGTTAAATTAGCAATAGAGCTTGGAATCTTCGACATCTTAGCCAAAGTAGAGAAAGGTATCAAACTTTCAGCAGAGGACATAGCTGTTAAGATAGGGTCTCCAGAAGGACACAAAATGTTGGACCGTCTTTTGAGGTTGTTGGTTAGTCACTCAATGTTGTATTGCTCTCTTTCTGAAGATCAACAACAACATGCTTCTCCTAAGATACTATATAGTCTTGCCCCAGCTGCTGAATACTTTGTCCTTGGGGATAATGATGATTTGTCGTTCGAACCTGCTTTAAAATTGGGTTTGGACAAGGTCTTAATGGAATCATGGTATTGTATTAAAGGAGCAATATTGGAAGGAGGTATACCATTCAATAGGGCTTATGGCATGCCTATATATGAGTATGCAGGTGTGAATCCCAGGTTCAATGATATTTTCAATAAAGCTATGGGCAGCATTACCACCATTATCATGAAGAGAGTTCTTGAATGCTACAATGGTTTTGAGCACATCAACACATTAGTGGATGTTGGTGGCGGTCTTGGAATCACTCTCAAGCTAATCACATCAAAACATTCTCATATACATGGTGTTAATTTTGACCTACCTCATGTCATAGAAAATGCTCAAACCTATCCAGGTAATAATGTTGTAGGTATCACACACGTGGAAGGAGATATGTTTGAGAGTGTTCCTAAAGGAGATGCCATTTTTCTGAAGTGGATACTTCACAATTGGAATGATGAACGTTGTTTGAAGTTGTTGAAAAATTGCTATAAAGCTACTCCCAATGATGGCAAAGTTATTGCTTTGGAATCTATTCTTCCTGTTTTGCCAGAGAATACAATGATTTCCAAGCTTGGTTCTAAAGAGGACTTCTACATGATGACTCTACAAGGAGGAGGAAAAGAGAGAACTCAAAATGAATTTATAGAATTGGCATTAGGATCTGGATTTAGTGGCATCAAATTCATCGGTTGTTTCTCTAGCAATTGGGTTATGGAATTTTTCAAGTGA

Protein sequence

>MsG0880042886.01.T01

MAPSIDTNNYNVTSSIIFPFAVKLAIELGIFDILAKVEKGIKLSAEDIAVKIGSPEGHKMLDRLLRLLVSHSMLYCSLSEDQQQHASPKILYSLAPAAEYFVLGDNDDLSFEPALKLGLDKVLMESWYCIKGAILEGGIPFNRAYGMPIYEYAGVNPRFNDIFNKAMGSITTIIMKRVLECYNGFEHINTLVDVGGGLGITLKLITSKHSHIHGVNFDLPHVIENAQTYPGNNVVGITHVEGDMFESVPKGDAIFLKWILHNWNDERCLKLLKNCYKATPNDGKVIALESILPVLPENTMISKLGSKEDFYMMTLQGGGKERTQNEFIELALGSGFSGIKFIGCFSSNWVMEFFK*