AlfalfaGEDB | MsG0880042915.01

M. sativa cultivar ZhongmuNo.1 / MsG0880042915.01

KEGG: -
GO: GO:0003677
PFAM: PF00249

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042915.01.T01	KEH18598.1	87.732	269	14	5	1	266	1	253	3.37E-160	455

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042915.01.T01	A0A072TP21	87.732	269	14	5	1	266	1	253	1.61e-160	455

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TFs/TRs:

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Gene ID	Type	Classification
MsG0880042915.01.T01	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180001043.01	MsG0880042915.01	0.818070	2.374156e-52	1.759150e-49
MsG0180001213.01	MsG0880042915.01	0.802296	6.002227e-49	2.929676e-46
MsG0180001795.01	MsG0880042915.01	0.805796	1.122945e-49	5.995989e-47
MsG0380012310.01	MsG0880042915.01	0.808309	3.299157e-50	1.880040e-47
MsG0380014276.01	MsG0880042915.01	0.817047	4.037586e-52	2.909184e-49
MsG0380017226.01	MsG0880042915.01	0.808405	3.147604e-50	1.798218e-47
MsG0380017866.01	MsG0880042915.01	0.830925	2.231591e-55	2.385200e-52
MsG0580025400.01	MsG0880042915.01	0.811843	5.716690e-51	3.576697e-48
MsG0580025421.01	MsG0880042915.01	0.813814	2.115624e-51	1.395767e-48
MsG0580029256.01	MsG0880042915.01	0.815250	1.017845e-51	6.981042e-49

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042915.01.T01	MTR_8g024690	87.732	269	14	5	1	266	1	253	4.08e-164	455
MsG0880042915.01.T01	MTR_8g024690	87.500	264	14	5	1	261	1	248	1.01e-157	442
MsG0880042915.01.T01	MTR_3g100180	68.321	262	64	6	1	261	1	244	1.55e-109	331
MsG0880042915.01.T01	MTR_3g100180	68.321	262	64	6	1	261	1	244	4.82e-108	334

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042915.01.T01	AT1G09710	42.366	262	119	8	4	261	9	242	8.04e-55	186
MsG0880042915.01.T01	AT1G09710	42.366	262	119	8	4	261	9	242	8.04e-55	186
MsG0880042915.01.T01	AT1G09710	42.366	262	119	8	4	261	9	242	1.65e-54	186
MsG0880042915.01.T01	AT1G58220	42.692	260	119	9	4	261	6	237	3.34e-50	176
MsG0880042915.01.T01	AT1G58220	42.692	260	119	9	4	261	6	237	4.36e-50	176
MsG0880042915.01.T01	AT1G09710	42.917	240	105	8	26	261	2	213	5.00e-49	170
MsG0880042915.01.T01	AT1G09710	42.917	240	105	8	26	261	2	213	5.00e-49	170

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Find 70 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAATGGTCAGAGGAAG+AGG	0.418034	8:-15842866	MsG0880042915.01.T01:CDS
AAGTGCAACAGAATTGTCTC+AGG	0.543345	8:-15842758	MsG0880042915.01.T01:CDS
AATTGGGTAGCCATGGCAAA+AGG	0.538707	8:-15842802	MsG0880042915.01.T01:CDS
ACAAGGGGACGATGAACCTA+TGG	0.553695	8:-15845729	MsG0880042915.01.T01:CDS
ACCCTGATACCAAATTTGAT+TGG	0.413869	8:-15845856	MsG0880042915.01.T01:CDS
ACGCCGCTTCAATCACACAA+CGG	0.764373	8:-15846025	MsG0880042915.01.T01:intron
ACTGGAAAATTTACAGTCAT+TGG	0.296643	8:+15843069	None:intergenic
AGACCGGAGGGAGTATGAGA+CGG	0.641157	8:+15845705	None:intergenic
AGAGATGCGGTGAAGGGAAT+TGG	0.330563	8:-15842819	MsG0880042915.01.T01:CDS
AGGAACAACCATACGCCAAG+CGG	0.617202	8:+15845768	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACAAGTCAATCCAAAC+GGG	-	Chr8:15843427-15843446	MsG0880042915.01.T01:intron	30.0%
ACAGTCAAAATGAAGAAGAA+AGG	+	Chr8:15843865-15843884	None:intergenic	30.0%
ACTGGAAAATTTACAGTCAT+TGG	+	Chr8:15845743-15845762	None:intergenic	30.0%
ATGTTTGTGTCTGTTATTGT+TGG	-	Chr8:15843549-15843568	MsG0880042915.01.T01:intron	30.0%
ATTAATATCTGACAGTGATG+CGG	-	Chr8:15845448-15845467	MsG0880042915.01.T01:intron	30.0%
CAGTCAAAATGAAGAAGAAA+GGG	+	Chr8:15843864-15843883	None:intergenic	30.0%
CATTGAAACCATAAAGAACT+TGG	+	Chr8:15845584-15845603	None:intergenic	30.0%
CCAAAAGGAAAAGAAAAGAA+TGG	-	Chr8:15845930-15845949	MsG0880042915.01.T01:intron	30.0%
CCTTGAATAATTGATGTATC+CGG	-	Chr8:15843162-15843181	MsG0880042915.01.T01:intron	30.0%
GCAAATTTCTTTCTGATTGT+GGG	-	Chr8:15845381-15845400	MsG0880042915.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	15842741	15846090	15842741	ID=MsG0880042915.01;Name=MsG0880042915.01
Chr8	mRNA	15842741	15846090	15842741	ID=MsG0880042915.01.T01;Parent=MsG0880042915.01;Name=MsG0880042915.01.T01;_AED=0.44;_eAED=0.47;_QI=0\|0\|0\|1\|1\|1\|4\|0\|266
Chr8	exon	15846026	15846090	15846026	ID=MsG0880042915.01.T01:exon:4078;Parent=MsG0880042915.01.T01
Chr8	exon	15845709	15845925	15845709	ID=MsG0880042915.01.T01:exon:4077;Parent=MsG0880042915.01.T01
Chr8	exon	15843647	15843725	15843647	ID=MsG0880042915.01.T01:exon:4076;Parent=MsG0880042915.01.T01
Chr8	exon	15842741	15843180	15842741	ID=MsG0880042915.01.T01:exon:4075;Parent=MsG0880042915.01.T01
Chr8	CDS	15846026	15846090	15846026	ID=MsG0880042915.01.T01:cds;Parent=MsG0880042915.01.T01
Chr8	CDS	15845709	15845925	15845709	ID=MsG0880042915.01.T01:cds;Parent=MsG0880042915.01.T01
Chr8	CDS	15843647	15843725	15843647	ID=MsG0880042915.01.T01:cds;Parent=MsG0880042915.01.T01
Chr8	CDS	15842741	15843180	15842741	ID=MsG0880042915.01.T01:cds;Parent=MsG0880042915.01.T01

Gene Sequence

>MsG0880042915.01.T01

ATGCCAGAAAATAATCCCAAGAAGGTTACCTTCTCCGAAAACGACGCCGCTTCAATCACACAACGGTATGACACAAAGACCTTATTGACGTTGTTTCAGGAATTATCAAATTACCCTGATACCAAATTTGATTGGAATGAATTGGTGAACAAAACTTCCACTGGTATTTCTAATGCCAGAGAGTATCAGATGCTATGGCGCCGCTTGGCGTATGGTTGTTCCTCGCCCCAAGATTTCAAACAAGGGGACGATGAACCTATGGTCCGTCTCATACTCCCTCCGGATGATGATAGTGACCTAGATTGCGAGCTGGAATCATTTCCTTCCGTACATGTTGAAGCTACATCAGAGTCCTCAGCATCCTGGTTCTCGGCGTTGTTTAATCATCAGGTGATAATTGCTTCCCGCACGCTAAGTGAATCTTCCCCTAATAGCTCAACAATTGAGGCTCCAATGACTGTAAATTTTCCAGTTTACCGTTCATCTAGAACTTCAAAGGAAATTTCACAGCCCTCTAATTTGACGGAACAGACAAGCATTACGTTTCCAGTTACTGTTCAGAGACAGAAACTGCGAACTGTGTCAGCAACAGATGCTTTAGAAACCAAGAGAATAGTTGGTGGTACCAGTACCACAGCTTCCAAAAGGAAAAGAAAAGAATGGTCAGAGGAAGAGGACAATCAGCTACGGGCTGCTGTTCAGAGATGCGGTGAAGGGAATTGGGTAGCCATGGCAAAAGGAGACAGATTTCCTATTAAGAGAAGTGCAACAGAATTGTCTCAGGTGGTTTTTCAACCCTAA

Protein sequence

>MsG0880042915.01.T01

MPENNPKKVTFSENDAASITQRYDTKTLLTLFQELSNYPDTKFDWNELVNKTSTGISNAREYQMLWRRLAYGCSSPQDFKQGDDEPMVRLILPPDDDSDLDCELESFPSVHVEATSESSASWFSALFNHQVIIASRTLSESSPNSSTIEAPMTVNFPVYRSSRTSKEISQPSNLTEQTSITFPVTVQRQKLRTVSATDALETKRIVGGTSTTASKRKRKEWSEEEDNQLRAAVQRCGEGNWVAMAKGDRFPIKRSATELSQVVFQP*