AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017866.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017866.01.T01 MTR_3g114070 80.833 360 18 4 1 347 1 322 0.0 577
MsG0380017866.01.T01 MTR_6g069420 60.440 273 65 2 81 347 90 325 2.07e-113 332
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017866.01.T01 AT5G42150 53.803 355 112 7 1 345 1 313 5.97e-120 349

Find 87 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTTCTGCAACAAGGTTAA+AGG 0.172768 3:+101648219 MsG0380017866.01.T01:CDS
TTGAAACAAAACAACTTCTT+TGG 0.175581 3:-101648184 None:intergenic
TTCTACTTATGCACTCATTC+TGG 0.244607 3:-101650336 None:intergenic
TCTAAGCGAGTTTCAACTTA+TGG 0.245710 3:+101650363 MsG0380017866.01.T01:three_prime_UTR
GCAGCGACGTCATCGGATTT+AGG 0.257070 3:+101648106 MsG0380017866.01.T01:CDS
CGCAGTTGAGTTGGCTCTTA+AGG 0.280389 3:-101647980 None:intergenic
TTAGCAGATCTTGCTGTCTT+TGG 0.282368 3:+101650209 MsG0380017866.01.T01:CDS
ACAGCAAGATCTGCTAAATT+AGG 0.304403 3:-101650203 None:intergenic
GAACAATTGGTTGATTCTTC+AGG 0.311379 3:+101648465 MsG0380017866.01.T01:CDS
TGAACAAGAAAGAGATTAAT+TGG 0.326433 3:+101648403 MsG0380017866.01.T01:CDS
GGGTTAGTTGAAGTCAAATA+TGG 0.327626 3:-101648036 None:intergenic
TGAAACAAAACAACTTCTTT+GGG 0.331117 3:-101648183 None:intergenic
TTGAAGGGCCGAAAATTTCT+TGG 0.349657 3:+101650055 MsG0380017866.01.T01:CDS
CGAGTTTCAACTTATGGATA+AGG 0.368526 3:+101650369 MsG0380017866.01.T01:three_prime_UTR
AAAACAGTTCGATATATGTT+TGG 0.371801 3:-101649170 None:intergenic
TGTTCTATTATTCATTATCA+TGG 0.386374 3:+101650470 MsG0380017866.01.T01:three_prime_UTR
AGCACACAAGGATTGGGAAT+TGG 0.394438 3:+101650279 MsG0380017866.01.T01:CDS
CACTGTTGATGGTGAACAAT+TGG 0.398212 3:+101648452 MsG0380017866.01.T01:CDS
GTTAGACATAATTGATAAGT+TGG 0.398968 3:+101648580 MsG0380017866.01.T01:intron
TCTGCATTCAAGTCATAATC+TGG 0.405560 3:-101648617 None:intergenic
GAGAGGTTAGTGGCTAAGTA+TGG 0.414660 3:+101649926 MsG0380017866.01.T01:CDS
AGTAACGTTTAATCGTGTTA+AGG 0.414836 3:-101648266 None:intergenic
GTCATCGGATTTAGGTATTA+CGG 0.419523 3:+101648114 MsG0380017866.01.T01:CDS
CCTCAAGTCAGGTCAAGATA+TGG 0.432018 3:+101650253 MsG0380017866.01.T01:CDS
ATGGTAGAGCACACAAGGAT+TGG 0.432114 3:+101650272 MsG0380017866.01.T01:CDS
GATGAGCGTCAGGCTTTGTA+TGG 0.434040 3:+101650007 MsG0380017866.01.T01:CDS
CCCATTCGCCACCTCAAGTC+AGG 0.439804 3:+101650242 MsG0380017866.01.T01:CDS
TTAATCTCTTTCTTGTTCAT+CGG 0.452851 3:-101648399 None:intergenic
ACAGTGGGTTGAAGCTTTGA+AGG 0.454177 3:+101650039 MsG0380017866.01.T01:CDS
CAGTTTGTATGAGAGGTTAG+TGG 0.456133 3:+101649916 MsG0380017866.01.T01:CDS
TGAGTTGGCTCTTAAGGCTC+TGG 0.456245 3:-101647974 None:intergenic
TGGTAGAGCACACAAGGATT+GGG 0.466759 3:+101650273 MsG0380017866.01.T01:CDS
GTGCCTATTGTCACTGTTGA+TGG 0.471196 3:+101648441 MsG0380017866.01.T01:CDS
ATCATGGTTGTATAATGTAT+TGG 0.471908 3:+101650486 MsG0380017866.01.T01:three_prime_UTR
TTCGATTATATCACTACTAA+AGG 0.473403 3:+101649209 MsG0380017866.01.T01:CDS
ACCTGACTTGAGGTGGCGAA+TGG 0.476175 3:-101650243 None:intergenic
TCACCATCAACAGTGACAAT+AGG 0.477717 3:-101648444 None:intergenic
TGCCGCCACTGCCACATCTC+CGG 0.480271 3:+101648140 MsG0380017866.01.T01:CDS
CAATATAACTGATGAGCGTC+AGG 0.488149 3:+101649997 MsG0380017866.01.T01:CDS
GAACAACAGAGGGAGTTGAT+TGG 0.494915 3:-101648083 None:intergenic
TGCTCGAGGCGGTCGGAGGA+AGG 0.495234 3:-101648010 None:intergenic
ACCTTTAACCTTGTTGCAGA+AGG 0.501255 3:-101648220 None:intergenic
CGCCGGAGATGTGGCAGTGG+CGG 0.501678 3:-101648142 None:intergenic
CCAGCGTTTCTAGATTATCA+TGG 0.503632 3:+101648348 MsG0380017866.01.T01:CDS
TAATTGATAAGTTGGTCAAA+AGG 0.506338 3:+101648588 MsG0380017866.01.T01:CDS
CATAATGTTCTGTAAAATCC+AGG 0.510746 3:+101650522 MsG0380017866.01.T01:three_prime_UTR
GCAATTTCAGTTTGTATGAG+AGG 0.510811 3:+101649909 MsG0380017866.01.T01:CDS
CCTGACTTGAGGTGGCGAAT+GGG 0.516805 3:-101650242 None:intergenic
TCTGAGATGGAAAATGCAGT+TGG 0.518885 3:+101650305 MsG0380017866.01.T01:CDS
TATTGTTGTTTATACATACC+TGG 0.521408 3:-101650540 None:intergenic
GATGGAAAATGCAGTTGGAC+AGG 0.523361 3:+101650310 MsG0380017866.01.T01:CDS
GGCTCTTAAGGCTCTGGCAA+TGG 0.525688 3:-101647968 None:intergenic
AGAAGCAAACTTATTTAATG+TGG 0.530184 3:-101650410 None:intergenic
GTTGTTCGCAGCGACGTCAT+CGG 0.536710 3:+101648099 MsG0380017866.01.T01:CDS
GGTGGAAGCCGCAGTTGAGT+TGG 0.538953 3:-101647989 None:intergenic
GTATGGAGCTGCTGAACAGT+GGG 0.539220 3:+101650024 MsG0380017866.01.T01:CDS
AACAGAGGGAGTTGATTGGT+TGG 0.543179 3:-101648079 None:intergenic
GGTTAGTGGCTAAGTATGGT+GGG 0.551859 3:+101649930 MsG0380017866.01.T01:CDS
TGTATGGAGCTGCTGAACAG+TGG 0.557881 3:+101650023 MsG0380017866.01.T01:CDS
CCTTTAACCTTGTTGCAGAA+GGG 0.563167 3:-101648219 None:intergenic
CCATGATAATCTAGAAACGC+TGG 0.563828 3:-101648348 None:intergenic
GAGCTGCTCGAGGCGGTCGG+AGG 0.571364 3:-101648014 None:intergenic
AGCTTGTCCCTTCTGCAACA+AGG 0.579776 3:+101648212 MsG0380017866.01.T01:CDS
AGGTTAGTGGCTAAGTATGG+TGG 0.582553 3:+101649929 MsG0380017866.01.T01:CDS
TAATTGGTCTCATTACAAGA+AGG 0.583029 3:+101648419 MsG0380017866.01.T01:CDS
CCATATCTTGACCTGACTTG+AGG 0.583256 3:-101650253 None:intergenic
TCTCTTAGACACGAAATACA+TGG 0.584697 3:-101649960 None:intergenic
ATGGAGCTGCTCGAGGCGGT+CGG 0.588493 3:-101648017 None:intergenic
TCGAGGCGGTCGGAGGAAGG+TGG 0.590975 3:-101648007 None:intergenic
GTCAAATATGGAGCTGCTCG+AGG 0.596084 3:-101648024 None:intergenic
CAGTGGGTTGAAGCTTTGAA+GGG 0.598125 3:+101650040 MsG0380017866.01.T01:CDS
AAGATATGGTAGAGCACACA+AGG 0.602564 3:+101650267 MsG0380017866.01.T01:CDS
ATGCAGATGAAGAAAAGAAG+TGG 0.611944 3:+101648633 MsG0380017866.01.T01:CDS
TTGCGCCGGAGATGTGGCAG+TGG 0.613004 3:-101648145 None:intergenic
ACGTCGCTGCGAACAACAGA+GGG 0.620026 3:-101648093 None:intergenic
TGGTATTCAGTACAAAGTGG+TGG 0.629118 3:+101648368 MsG0380017866.01.T01:CDS
ACTGAGCTAGCAAGAATGAG+AGG 0.632041 3:+101647928 None:intergenic
GTTAGTGGCTAAGTATGGTG+GGG 0.646752 3:+101649931 MsG0380017866.01.T01:CDS
TATAATGTATTGGTGATCTG+TGG 0.657602 3:+101650496 MsG0380017866.01.T01:three_prime_UTR
TATCTTGACCTGACTTGAGG+TGG 0.659112 3:-101650250 None:intergenic
GCAAGAATGAGAGGACTCAA+CGG 0.662333 3:+101647937 None:intergenic
GACGTCGCTGCGAACAACAG+AGG 0.662716 3:-101648094 None:intergenic
CTTAAGAGCCAACTCAACTG+CGG 0.672048 3:+101647981 MsG0380017866.01.T01:CDS
TCATGGTATTCAGTACAAAG+TGG 0.680108 3:+101648365 MsG0380017866.01.T01:CDS
TGATAATCTAGAAACGCTGG+AGG 0.683447 3:-101648345 None:intergenic
TAGGTGGGTAGATAATCACT+TGG 0.683522 3:+101649133 MsG0380017866.01.T01:intron
AAATATGGAGCTGCTCGAGG+CGG 0.687546 3:-101648021 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATCTTTTTTAGTTAAAATA+CGG + Chr3:101648722-101648741 MsG0380017866.01.T01:intron 10.0%
!!! TTTTTTCTTTCTTTTTATAT+TGG + Chr3:101649041-101649060 MsG0380017866.01.T01:intron 10.0%
!! TTTGTTGATATTATAACAAT+GGG + Chr3:101649413-101649432 MsG0380017866.01.T01:intron 15.0%
!!! AATAATCATTTGTTAAATCA+AGG - Chr3:101649095-101649114 None:intergenic 15.0%
!!! ATTTGTTGATATTATAACAA+TGG + Chr3:101649412-101649431 MsG0380017866.01.T01:intron 15.0%
!!! GTTATCAGATTATTTTTTTT+TGG - Chr3:101649366-101649385 None:intergenic 15.0%
!! AAGTTATCAGATCTTAAAAA+AGG - Chr3:101649337-101649356 None:intergenic 20.0%
!! AATATACAATAAACCACAAA+TGG - Chr3:101648515-101648534 None:intergenic 20.0%
!! AATATTTATCAACCATTACA+AGG + Chr3:101649794-101649813 MsG0380017866.01.T01:intron 20.0%
!! ATATTTATCAACCATTACAA+GGG + Chr3:101649795-101649814 MsG0380017866.01.T01:intron 20.0%
!! ATCAATTATGTCTAACAAAA+GGG - Chr3:101648576-101648595 None:intergenic 20.0%
!! GATAAATATTGCTTCATAAA+AGG - Chr3:101649784-101649803 None:intergenic 20.0%
!! TATCAATTATGTCTAACAAA+AGG - Chr3:101648577-101648596 None:intergenic 20.0%
!! TGTTCTATTATTCATTATCA+TGG + Chr3:101650470-101650489 MsG0380017866.01.T01:three_prime_UTR 20.0%
!!! AGATTAAGTAGATATGATTT+TGG + Chr3:101649069-101649088 MsG0380017866.01.T01:intron 20.0%
!!! TGTTACATTCAGTTATTTTA+TGG + Chr3:101649387-101649406 MsG0380017866.01.T01:intron 20.0%
! AAAACAGTTCGATATATGTT+TGG - Chr3:101649173-101649192 None:intergenic 25.0%
! ACTACTAAAAATTCTCTACT+TGG - Chr3:101648933-101648952 None:intergenic 25.0%
! AGAAGCAAACTTATTTAATG+TGG - Chr3:101650413-101650432 None:intergenic 25.0%
! AGCTTAATATTTGATGAATC+AGG - Chr3:101649483-101649502 None:intergenic 25.0%
! ATAAAGAGCAGAAATAGAAA+AGG - Chr3:101649860-101649879 None:intergenic 25.0%
! ATCATGGTTGTATAATGTAT+TGG + Chr3:101650486-101650505 MsG0380017866.01.T01:three_prime_UTR 25.0%
! GGAAAAAATGCAAAAACAAT+AGG - Chr3:101648327-101648346 None:intergenic 25.0%
! GTATCATATCTCAGTTATTA+TGG - Chr3:101650099-101650118 None:intergenic 25.0%
! GTTAGACATAATTGATAAGT+TGG + Chr3:101648580-101648599 MsG0380017866.01.T01:intron 25.0%
! GTTCAAATAAACAAGAAGAA+AGG - Chr3:101648684-101648703 None:intergenic 25.0%
! TAACTAAAAAAGATAGCTAG+AGG - Chr3:101648717-101648736 None:intergenic 25.0%
! TCAATTATGTCTAACAAAAG+GGG - Chr3:101648575-101648594 None:intergenic 25.0%
! TCACAAATATAAGCACTTAA+GGG - Chr3:101650162-101650181 None:intergenic 25.0%
! TGAAACAAAACAACTTCTTT+GGG - Chr3:101648186-101648205 None:intergenic 25.0%
! TGAACAAGAAAGAGATTAAT+TGG + Chr3:101648403-101648422 MsG0380017866.01.T01:CDS 25.0%
! TTAATATTTGATGAATCAGG+AGG - Chr3:101649480-101649499 None:intergenic 25.0%
! TTAATCTCTTTCTTGTTCAT+CGG - Chr3:101648402-101648421 None:intergenic 25.0%
! TTATATCACTACTAAAGGTA+AGG + Chr3:101649214-101649233 MsG0380017866.01.T01:intron 25.0%
! TTCACAAATATAAGCACTTA+AGG - Chr3:101650163-101650182 None:intergenic 25.0%
! TTCGATTATATCACTACTAA+AGG + Chr3:101649209-101649228 MsG0380017866.01.T01:CDS 25.0%
! TTGAAACAAAACAACTTCTT+TGG - Chr3:101648187-101648206 None:intergenic 25.0%
!! GTGCTTATATTTGTGAATTT+TGG + Chr3:101650166-101650185 MsG0380017866.01.T01:intron 25.0%
!! TGAACATACCAAGAAATTTT+CGG - Chr3:101650066-101650085 None:intergenic 25.0%
!!! AACATACAGCTTTAAAAAGA+TGG - Chr3:101649550-101649569 None:intergenic 25.0%
!!! TAATTGATAAGTTGGTCAAA+AGG + Chr3:101648588-101648607 MsG0380017866.01.T01:CDS 25.0%
!!! TAGAGTTATTTTTCAAACTG+AGG - Chr3:101649697-101649716 None:intergenic 25.0%
!!! TATTGTTGTTTATACATACC+TGG - Chr3:101650543-101650562 None:intergenic 25.0%
!!! TTAAAGCTGTATGTTTTGAA+AGG + Chr3:101649555-101649574 MsG0380017866.01.T01:intron 25.0%
!!! TTATATTTGTGAATTTTGGC+AGG + Chr3:101650170-101650189 MsG0380017866.01.T01:intron 25.0%
!!! TTTGTAATGGATCTCTAAAT+CGG - Chr3:101648875-101648894 None:intergenic 25.0%
AAAAGTAATCACCCTTGTAA+TGG - Chr3:101649809-101649828 None:intergenic 30.0%
AAAGGAATTATCTTCGCATT+TGG - Chr3:101649319-101649338 None:intergenic 30.0%
AATAATCTCATAAATGCCCA+TGG - Chr3:101648994-101649013 None:intergenic 30.0%
AGTAACGTTTAATCGTGTTA+AGG - Chr3:101648269-101648288 None:intergenic 30.0%
CAATTATGTCTAACAAAAGG+GGG - Chr3:101648574-101648593 None:intergenic 30.0%
CATAATGTTCTGTAAAATCC+AGG + Chr3:101650522-101650541 MsG0380017866.01.T01:three_prime_UTR 30.0%
CATCAAATATTAAGCTGTCT+TGG + Chr3:101649487-101649506 MsG0380017866.01.T01:intron 30.0%
CCATGTTGTCGAAAAAAAAA+AGG - Chr3:101650569-101650588 None:intergenic 30.0%
CTACATAGACTGAAATATTC+CGG + Chr3:101648904-101648923 MsG0380017866.01.T01:intron 30.0%
CTTGTTCATATTTCCATTTG+TGG + Chr3:101648499-101648518 MsG0380017866.01.T01:intron 30.0%
TGGGCATTTATGAGATTATT+AGG + Chr3:101648994-101649013 MsG0380017866.01.T01:intron 30.0%
TTATGAGATTATTAGGAGTC+TGG + Chr3:101649001-101649020 MsG0380017866.01.T01:intron 30.0%
! CAATTGCAATCTAAAACCAT+GGG + Chr3:101648975-101648994 MsG0380017866.01.T01:intron 30.0%
! GTAGTGACTGAATTTTGTAA+TGG - Chr3:101648888-101648907 None:intergenic 30.0%
! TAATTGGTCTCATTACAAGA+AGG + Chr3:101648419-101648438 MsG0380017866.01.T01:CDS 30.0%
! TATAATGTATTGGTGATCTG+TGG + Chr3:101650496-101650515 MsG0380017866.01.T01:three_prime_UTR 30.0%
!! TTTGCTGTGACTTGTTATAT+AGG + Chr3:101649114-101649133 MsG0380017866.01.T01:intron 30.0%
!!! CCTTTTTTTTTTCGACAACA+TGG + Chr3:101650566-101650585 MsG0380017866.01.T01:three_prime_UTR 30.0%
!!! TTTTTTTTCGACAACATGGT+TGG + Chr3:101650570-101650589 MsG0380017866.01.T01:three_prime_UTR 30.0%
AAAGATGGCTCAGTTGAATA+TGG - Chr3:101649535-101649554 None:intergenic 35.0%
ACAGCAAGATCTGCTAAATT+AGG - Chr3:101650206-101650225 None:intergenic 35.0%
AGAGCAGAAATAGAAAAGGA+AGG - Chr3:101649856-101649875 None:intergenic 35.0%
ATGCAGATGAAGAAAAGAAG+TGG + Chr3:101648633-101648652 MsG0380017866.01.T01:CDS 35.0%
CGAGTTTCAACTTATGGATA+AGG + Chr3:101650369-101650388 MsG0380017866.01.T01:three_prime_UTR 35.0%
GCAATTTCAGTTTGTATGAG+AGG + Chr3:101649909-101649928 MsG0380017866.01.T01:CDS 35.0%
GTCATCGGATTTAGGTATTA+CGG + Chr3:101648114-101648133 MsG0380017866.01.T01:CDS 35.0%
TATAAGCACTTAAGGGTTAC+AGG - Chr3:101650155-101650174 None:intergenic 35.0%
TCATGGTATTCAGTACAAAG+TGG + Chr3:101648365-101648384 MsG0380017866.01.T01:CDS 35.0%
TCTAAGCGAGTTTCAACTTA+TGG + Chr3:101650363-101650382 MsG0380017866.01.T01:three_prime_UTR 35.0%
TCTCTTAGACACGAAATACA+TGG - Chr3:101649963-101649982 None:intergenic 35.0%
TCTGCATTCAAGTCATAATC+TGG - Chr3:101648620-101648639 None:intergenic 35.0%
TGTATATTAAGCTGTCTCTG+TGG + Chr3:101649437-101649456 MsG0380017866.01.T01:intron 35.0%
TTAAAACCTTAGAAGAGCAG+TGG - Chr3:101648759-101648778 None:intergenic 35.0%
TTCTACTTATGCACTCATTC+TGG - Chr3:101650339-101650358 None:intergenic 35.0%
! AAAATTCTCTACTTGGTGAC+CGG - Chr3:101648926-101648945 None:intergenic 35.0%
! GAACAATTGGTTGATTCTTC+AGG + Chr3:101648465-101648484 MsG0380017866.01.T01:CDS 35.0%
! GCAATTGCAATCTAAAACCA+TGG + Chr3:101648974-101648993 MsG0380017866.01.T01:intron 35.0%
!! CTGTGACTTGTTATATAGGT+GGG + Chr3:101649118-101649137 MsG0380017866.01.T01:intron 35.0%
!! GGGTTAGTTGAAGTCAAATA+TGG - Chr3:101648039-101648058 None:intergenic 35.0%
AAAAGCAAGAACTTGGAGTG+AGG - Chr3:101649671-101649690 None:intergenic 40.0%
AACTGAGTACGAAAAGCAAG+AGG - Chr3:101649733-101649752 None:intergenic 40.0%
AAGATATGGTAGAGCACACA+AGG + Chr3:101650267-101650286 MsG0380017866.01.T01:CDS 40.0%
ACCTTTAACCTTGTTGCAGA+AGG - Chr3:101648223-101648242 None:intergenic 40.0%
CAATATAACTGATGAGCGTC+AGG + Chr3:101649997-101650016 MsG0380017866.01.T01:CDS 40.0%
CAGTTTGTATGAGAGGTTAG+TGG + Chr3:101649916-101649935 MsG0380017866.01.T01:CDS 40.0%
CCATGATAATCTAGAAACGC+TGG - Chr3:101648351-101648370 None:intergenic 40.0%
CCTTTAACCTTGTTGCAGAA+GGG - Chr3:101648222-101648241 None:intergenic 40.0%
GAGGATGAAAAGCAAGAACT+TGG - Chr3:101649678-101649697 None:intergenic 40.0%
GATGTTGTAGAGAGTAGTTG+TGG + Chr3:101648788-101648807 MsG0380017866.01.T01:intron 40.0%
TAGGTGGGTAGATAATCACT+TGG + Chr3:101649133-101649152 MsG0380017866.01.T01:intron 40.0%
TCACCATCAACAGTGACAAT+AGG - Chr3:101648447-101648466 None:intergenic 40.0%
TCCATAGCATGATAGACTTC+AGG - Chr3:101649883-101649902 None:intergenic 40.0%
TCCTGAAGTCTATCATGCTA+TGG + Chr3:101649879-101649898 MsG0380017866.01.T01:intron 40.0%
TCGCATTTGGAAAATGACAG+AGG - Chr3:101649306-101649325 None:intergenic 40.0%
TCTATCATGCTATGGAGTGT+AGG + Chr3:101649887-101649906 MsG0380017866.01.T01:intron 40.0%
TGATAATCTAGAAACGCTGG+AGG - Chr3:101648348-101648367 None:intergenic 40.0%
TGGTATTCAGTACAAAGTGG+TGG + Chr3:101648368-101648387 MsG0380017866.01.T01:CDS 40.0%
TTGAAGGGCCGAAAATTTCT+TGG + Chr3:101650055-101650074 MsG0380017866.01.T01:CDS 40.0%
TTTGAAAGGATACCAGTCGA+GGG + Chr3:101649569-101649588 MsG0380017866.01.T01:intron 40.0%
! AGCGATCAACGAGATTTTGA+GGG - Chr3:101648059-101648078 None:intergenic 40.0%
! CCAGCGTTTCTAGATTATCA+TGG + Chr3:101648348-101648367 MsG0380017866.01.T01:CDS 40.0%
! TCTGAGATGGAAAATGCAGT+TGG + Chr3:101650305-101650324 MsG0380017866.01.T01:CDS 40.0%
! TTAGCAGATCTTGCTGTCTT+TGG + Chr3:101650209-101650228 MsG0380017866.01.T01:CDS 40.0%
!! CACTGTTGATGGTGAACAAT+TGG + Chr3:101648452-101648471 MsG0380017866.01.T01:CDS 40.0%
!! GCTGTGACTTGTTATATAGG+TGG + Chr3:101649117-101649136 MsG0380017866.01.T01:intron 40.0%
!! GTGAATTTTGGCAGGTGATT+TGG + Chr3:101650178-101650197 MsG0380017866.01.T01:intron 40.0%
!! TTGAAGCTATTTTGTTGCGC+CGG - Chr3:101648162-101648181 None:intergenic 40.0%
!! TTTTGAAAGGATACCAGTCG+AGG + Chr3:101649568-101649587 MsG0380017866.01.T01:intron 40.0%
!!! TGGGAATTGGTTTTCTGAGA+TGG + Chr3:101650292-101650311 MsG0380017866.01.T01:CDS 40.0%
AAGGAAGGCAGCAGACAATA+AGG - Chr3:101649841-101649860 None:intergenic 45.0%
AGCACACAAGGATTGGGAAT+TGG + Chr3:101650279-101650298 MsG0380017866.01.T01:CDS 45.0%
AGGAAGGCAGCAGACAATAA+GGG - Chr3:101649840-101649859 None:intergenic 45.0%
AGGTTAGTGGCTAAGTATGG+TGG + Chr3:101649929-101649948 MsG0380017866.01.T01:CDS 45.0%
ATGGTAGAGCACACAAGGAT+TGG + Chr3:101650272-101650291 MsG0380017866.01.T01:CDS 45.0%
CCCTTCTGCAACAAGGTTAA+AGG + Chr3:101648219-101648238 MsG0380017866.01.T01:CDS 45.0%
CCTCAAGTCAGGTCAAGATA+TGG + Chr3:101650253-101650272 MsG0380017866.01.T01:CDS 45.0%
CTTAAGAGCCAACTCAACTG+CGG + Chr3:101647981-101648000 MsG0380017866.01.T01:CDS 45.0%
CTTGTACCACTGCTCTTCTA+AGG + Chr3:101648750-101648769 MsG0380017866.01.T01:intron 45.0%
GAGAGGTTAGTGGCTAAGTA+TGG + Chr3:101649926-101649945 MsG0380017866.01.T01:CDS 45.0%
GATGGAAAATGCAGTTGGAC+AGG + Chr3:101650310-101650329 MsG0380017866.01.T01:CDS 45.0%
GGTTAGTGGCTAAGTATGGT+GGG + Chr3:101649930-101649949 MsG0380017866.01.T01:CDS 45.0%
GTGCCTATTGTCACTGTTGA+TGG + Chr3:101648441-101648460 MsG0380017866.01.T01:CDS 45.0%
GTTAGTGGCTAAGTATGGTG+GGG + Chr3:101649931-101649950 MsG0380017866.01.T01:CDS 45.0%
TGGTAGAGCACACAAGGATT+GGG + Chr3:101650273-101650292 MsG0380017866.01.T01:CDS 45.0%
TTAAGGGTTACAGGTCTTCG+AGG - Chr3:101650146-101650165 None:intergenic 45.0%
! AACAGAGGGAGTTGATTGGT+TGG - Chr3:101648082-101648101 None:intergenic 45.0%
! CCATATCTTGACCTGACTTG+AGG - Chr3:101650256-101650275 None:intergenic 45.0%
! GAACAACAGAGGGAGTTGAT+TGG - Chr3:101648086-101648105 None:intergenic 45.0%
! GAGCGATCAACGAGATTTTG+AGG - Chr3:101648060-101648079 None:intergenic 45.0%
! TATCTTGACCTGACTTGAGG+TGG - Chr3:101650253-101650272 None:intergenic 45.0%
!! ACAGTGGGTTGAAGCTTTGA+AGG + Chr3:101650039-101650058 MsG0380017866.01.T01:CDS 45.0%
!! CAGTGGGTTGAAGCTTTGAA+GGG + Chr3:101650040-101650059 MsG0380017866.01.T01:CDS 45.0%
AAATACCTCTCTCCCTCGAC+TGG - Chr3:101649584-101649603 None:intergenic 50.0%
AAATATGGAGCTGCTCGAGG+CGG - Chr3:101648024-101648043 None:intergenic 50.0%
AGAAAAGAAGTGGCGCGAGT+AGG + Chr3:101648643-101648662 MsG0380017866.01.T01:intron 50.0%
AGCTTGTCCCTTCTGCAACA+AGG + Chr3:101648212-101648231 MsG0380017866.01.T01:CDS 50.0%
GTATGGAGCTGCTGAACAGT+GGG + Chr3:101650024-101650043 MsG0380017866.01.T01:CDS 50.0%
GTCAAATATGGAGCTGCTCG+AGG - Chr3:101648027-101648046 None:intergenic 50.0%
TGTATGGAGCTGCTGAACAG+TGG + Chr3:101650023-101650042 MsG0380017866.01.T01:CDS 50.0%
! ATTTTGTTGCGCCGGAGATG+TGG - Chr3:101648154-101648173 None:intergenic 50.0%
! GATGAGCGTCAGGCTTTGTA+TGG + Chr3:101650007-101650026 MsG0380017866.01.T01:CDS 50.0%
! TGAGTTGGCTCTTAAGGCTC+TGG - Chr3:101647977-101647996 None:intergenic 50.0%
!! CGCAGTTGAGTTGGCTCTTA+AGG - Chr3:101647983-101648002 None:intergenic 50.0%
ACGTCGCTGCGAACAACAGA+GGG - Chr3:101648096-101648115 None:intergenic 55.0%
GCAGCGACGTCATCGGATTT+AGG + Chr3:101648106-101648125 MsG0380017866.01.T01:CDS 55.0%
GTTGTTCGCAGCGACGTCAT+CGG + Chr3:101648099-101648118 MsG0380017866.01.T01:CDS 55.0%
! ACCTGACTTGAGGTGGCGAA+TGG - Chr3:101650246-101650265 None:intergenic 55.0%
! CCTGACTTGAGGTGGCGAAT+GGG - Chr3:101650245-101650264 None:intergenic 55.0%
! GGCTCTTAAGGCTCTGGCAA+TGG - Chr3:101647971-101647990 None:intergenic 55.0%
CCCATTCGCCACCTCAAGTC+AGG + Chr3:101650242-101650261 MsG0380017866.01.T01:CDS 60.0%
GACGTCGCTGCGAACAACAG+AGG - Chr3:101648097-101648116 None:intergenic 60.0%
GGATACCAGTCGAGGGAGAG+AGG + Chr3:101649576-101649595 MsG0380017866.01.T01:intron 60.0%
GGTGGAAGCCGCAGTTGAGT+TGG - Chr3:101647992-101648011 None:intergenic 60.0%
ATGGAGCTGCTCGAGGCGGT+CGG - Chr3:101648020-101648039 None:intergenic 65.0%
TGCCGCCACTGCCACATCTC+CGG + Chr3:101648140-101648159 MsG0380017866.01.T01:CDS 65.0%
TTGCGCCGGAGATGTGGCAG+TGG - Chr3:101648148-101648167 None:intergenic 65.0%
CGCCGGAGATGTGGCAGTGG+CGG - Chr3:101648145-101648164 None:intergenic 70.0%
TCGAGGCGGTCGGAGGAAGG+TGG - Chr3:101648010-101648029 None:intergenic 70.0%
TGCTCGAGGCGGTCGGAGGA+AGG - Chr3:101648013-101648032 None:intergenic 70.0%
GAGCTGCTCGAGGCGGTCGG+AGG - Chr3:101648017-101648036 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr3 gene 101647943 101650596 101647943 ID=MsG0380017866.01;Name=MsG0380017866.01
Chr3 mRNA 101647943 101650596 101647943 ID=MsG0380017866.01.T01;Parent=MsG0380017866.01;Name=MsG0380017866.01.T01;_AED=0.49;_eAED=0.54;_QI=0|1|0.8|1|1|1|5|244|347
Chr3 exon 101647943 101648486 101647943 ID=MsG0380017866.01.T01:exon:2929;Parent=MsG0380017866.01.T01
Chr3 exon 101648585 101648660 101648585 ID=MsG0380017866.01.T01:exon:2930;Parent=MsG0380017866.01.T01
Chr3 exon 101649136 101649230 101649136 ID=MsG0380017866.01.T01:exon:2931;Parent=MsG0380017866.01.T01
Chr3 exon 101649909 101650076 101649909 ID=MsG0380017866.01.T01:exon:2932;Parent=MsG0380017866.01.T01
Chr3 exon 101650192 101650596 101650192 ID=MsG0380017866.01.T01:exon:2933;Parent=MsG0380017866.01.T01
Chr3 CDS 101647943 101648486 101647943 ID=MsG0380017866.01.T01:cds;Parent=MsG0380017866.01.T01
Chr3 CDS 101648585 101648660 101648585 ID=MsG0380017866.01.T01:cds;Parent=MsG0380017866.01.T01
Chr3 CDS 101649136 101649230 101649136 ID=MsG0380017866.01.T01:cds;Parent=MsG0380017866.01.T01
Chr3 CDS 101649909 101650076 101649909 ID=MsG0380017866.01.T01:cds;Parent=MsG0380017866.01.T01
Chr3 CDS 101650192 101650352 101650192 ID=MsG0380017866.01.T01:cds;Parent=MsG0380017866.01.T01
Chr3 three_prime_UTR 101650353 101650596 101650353 ID=MsG0380017866.01.T01:three_prime_utr;Parent=MsG0380017866.01.T01
Gene Sequence

>MsG0380017866.01.T01

ATGAGAGGACTCAACGGAACAATATCCATTGCCAGAGCCTTAAGAGCCAACTCAACTGCGGCTTCCACCTTCCTCCGACCGCCTCGAGCAGCTCCATATTTGACTTCAACTAACCCTCAAAATCTCGTTGATCGCTCCAACCAATCAACTCCCTCTGTTGTTCGCAGCGACGTCATCGGATTTAGGTATTACGGTTCTGCCGCCACTGCCACATCTCCGGCGCAACAAAATAGCTTCAATCCCAAAGAAGTTGTTTTGTTTCAATATGAAGCTTGTCCCTTCTGCAACAAGGTTAAAGGTAAAATTTTATTCAAATTAGTAATCCTTAACACGATTAAACGTTACTTGTTTGTTAATTTAGATGAGTATTGCTTTGAATTTCCTATTGTTTTTGCATTTTTTCCTCCAGCGTTTCTAGATTATCATGGTATTCAGTACAAAGTGGTGGAAGTAAATCCGATGAACAAGAAAGAGATTAATTGGTCTCATTACAAGAAGGTGCCTATTGTCACTGTTGATGGTGAACAATTGGTTGATTCTTCAGACATAATTGATAAGTTGGTCAAAAGGATACATCCAGATTATGACTTGAATGCAGATGAAGAAAAGAAGTGGCGCGAGTGGGTAGATAATCACTTGGTGCATGTTTTGTCGCCAAACATATATCGAACTGTTTTAGAAGCTCTTGAATCATTCGATTATATCACTACTAAAGGCAATTTCAGTTTGTATGAGAGGTTAGTGGCTAAGTATGGTGGGGCTGCTGCCATGTATTTCGTGTCTAAGAGATTGAAGAAGAAACACAATATAACTGATGAGCGTCAGGCTTTGTATGGAGCTGCTGAACAGTGGGTTGAAGCTTTGAAGGGCCGAAAATTTCTTGGTGATTTGGAACCTAATTTAGCAGATCTTGCTGTCTTTGGTGTTCTAAGACCCATTCGCCACCTCAAGTCAGGTCAAGATATGGTAGAGCACACAAGGATTGGGAATTGGTTTTCTGAGATGGAAAATGCAGTTGGACAGGCTTCCAGAATGAGTGCATAA

Protein sequence

>MsG0380017866.01.T01

MRGLNGTISIARALRANSTAASTFLRPPRAAPYLTSTNPQNLVDRSNQSTPSVVRSDVIGFRYYGSAATATSPAQQNSFNPKEVVLFQYEACPFCNKVKGKILFKLVILNTIKRYLFVNLDEYCFEFPIVFAFFPPAFLDYHGIQYKVVEVNPMNKKEINWSHYKKVPIVTVDGEQLVDSSDIIDKLVKRIHPDYDLNADEEKKWREWVDNHLVHVLSPNIYRTVLEALESFDYITTKGNFSLYERLVAKYGGAAAMYFVSKRLKKKHNITDERQALYGAAEQWVEALKGRKFLGDLEPNLADLAVFGVLRPIRHLKSGQDMVEHTRIGNWFSEMENAVGQASRMSA*