Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380017866.01.T01 | XP_003603775.1 | 80.833 | 360 | 18 | 4 | 1 | 347 | 1 | 322 | 0 | 577 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380017866.01.T01 | Q7ZUC7 | 41.1 | 309 | 97 | 8 | 83 | 343 | 106 | 377 | 1.05E-64 | 212 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380017866.01.T01 | G7J598 | 80.833 | 360 | 18 | 4 | 1 | 347 | 1 | 322 | 0.0 | 577 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0180000152.01 | MsG0380017866.01 | 0.807456 | 5.011005e-50 | 2.792432e-47 |
MsG0180000614.01 | MsG0380017866.01 | 0.805746 | 1.150080e-49 | 6.133348e-47 |
MsG0180001131.01 | MsG0380017866.01 | 0.806131 | 9.549024e-50 | 5.142486e-47 |
MsG0180001141.01 | MsG0380017866.01 | 0.823240 | 1.540508e-53 | 1.319030e-50 |
MsG0180001213.01 | MsG0380017866.01 | 0.880747 | 4.254307e-70 | 2.427316e-66 |
MsG0180001795.01 | MsG0380017866.01 | 0.819438 | 1.161630e-52 | 8.938863e-50 |
MsG0180002458.01 | MsG0380017866.01 | 0.881479 | 2.320759e-70 | 1.361931e-66 |
MsG0180003073.01 | MsG0380017866.01 | 0.808259 | 3.381579e-50 | 1.924526e-47 |
MsG0180003097.01 | MsG0380017866.01 | 0.804365 | 2.237414e-49 | 1.151452e-46 |
MsG0180003854.01 | MsG0380017866.01 | 0.820326 | 7.276870e-53 | 5.739684e-50 |
MsG0180004130.01 | MsG0380017866.01 | 0.808110 | 3.637318e-50 | 2.061839e-47 |
MsG0180004656.01 | MsG0380017866.01 | 0.872545 | 2.928904e-67 | 1.230616e-63 |
MsG0180004780.01 | MsG0380017866.01 | 0.821513 | 3.880008e-53 | 3.163057e-50 |
MsG0180005851.01 | MsG0380017866.01 | 0.830721 | 2.503161e-55 | 2.659441e-52 |
MsG0180005957.01 | MsG0380017866.01 | 0.838697 | 2.464780e-57 | 3.327611e-54 |
MsG0280006406.01 | MsG0380017866.01 | 0.834266 | 3.310914e-56 | 3.909083e-53 |
MsG0280011387.01 | MsG0380017866.01 | 0.837928 | 3.891007e-57 | 5.131146e-54 |
MsG0380011659.01 | MsG0380017866.01 | 0.815890 | 7.331124e-52 | 5.117135e-49 |
MsG0380012108.01 | MsG0380017866.01 | 0.803272 | 3.772398e-49 | 1.887631e-46 |
MsG0380012310.01 | MsG0380017866.01 | 0.852036 | 6.005175e-61 | 1.238847e-57 |
MsG0380012566.01 | MsG0380017866.01 | 0.882339 | 1.131954e-70 | 6.869730e-67 |
MsG0380012661.01 | MsG0380017866.01 | -0.806492 | 8.012930e-50 | 4.355161e-47 |
MsG0380013178.01 | MsG0380017866.01 | 0.805093 | 1.576717e-49 | 8.267947e-47 |
MsG0380014276.01 | MsG0380017866.01 | 0.817371 | 3.413820e-52 | 2.481620e-49 |
MsG0380015027.01 | MsG0380017866.01 | 0.811862 | 5.660832e-51 | 3.543571e-48 |
MsG0380015216.01 | MsG0380017866.01 | 0.824122 | 9.578840e-54 | 8.408212e-51 |
MsG0380015964.01 | MsG0380017866.01 | 0.817235 | 3.663734e-52 | 2.653259e-49 |
MsG0380015965.01 | MsG0380017866.01 | 0.821788 | 3.350747e-53 | 2.753155e-50 |
MsG0380016906.01 | MsG0380017866.01 | 0.834041 | 3.768588e-56 | 4.419319e-53 |
MsG0380017866.01 | MsG0480018906.01 | 0.815957 | 7.082777e-52 | 4.953089e-49 |
MsG0380017866.01 | MsG0480021164.01 | 0.806328 | 8.675855e-50 | 4.695856e-47 |
MsG0380017866.01 | MsG0480021904.01 | 0.800006 | 1.764671e-48 | 8.127007e-46 |
MsG0380017866.01 | MsG0480021994.01 | 0.808046 | 3.753678e-50 | 2.124174e-47 |
MsG0380017866.01 | MsG0480022222.01 | 0.818741 | 1.672894e-52 | 1.262738e-49 |
MsG0380017866.01 | MsG0480023174.01 | 0.859390 | 4.274347e-63 | 1.127116e-59 |
MsG0380017866.01 | MsG0480023747.01 | 0.808115 | 3.629836e-50 | 2.057877e-47 |
MsG0380017866.01 | MsG0480023814.01 | 0.809761 | 1.612714e-50 | 9.550901e-48 |
MsG0380017866.01 | MsG0480023968.01 | 0.827147 | 1.836798e-54 | 1.758211e-51 |
MsG0380017866.01 | MsG0580024390.01 | 0.810973 | 8.830019e-51 | 5.399841e-48 |
MsG0380017866.01 | MsG0580024874.01 | 0.821872 | 3.203862e-53 | 2.638752e-50 |
MsG0380017866.01 | MsG0580025400.01 | 0.857170 | 1.958938e-62 | 4.791671e-59 |
MsG0380017866.01 | MsG0580025421.01 | 0.827054 | 1.933499e-54 | 1.845722e-51 |
MsG0380017866.01 | MsG0580028901.01 | 0.828429 | 9.032855e-55 | 8.976546e-52 |
MsG0380017866.01 | MsG0580029014.01 | 0.804185 | 2.439222e-49 | 1.249470e-46 |
MsG0380017866.01 | MsG0580029355.01 | 0.812271 | 4.611764e-51 | 2.919190e-48 |
MsG0380017866.01 | MsG0580029642.01 | 0.829578 | 4.760064e-55 | 4.891532e-52 |
MsG0380017866.01 | MsG0680030285.01 | 0.824204 | 9.162822e-54 | 8.061948e-51 |
MsG0380017866.01 | MsG0680030414.01 | 0.813288 | 2.761303e-51 | 1.795871e-48 |
MsG0380017866.01 | MsG0680032430.01 | 0.852028 | 6.039904e-61 | 1.245629e-57 |
MsG0380017866.01 | MsG0680035704.01 | 0.814791 | 1.286660e-51 | 8.716016e-49 |
MsG0380017866.01 | MsG0780036546.01 | 0.806322 | 8.702406e-50 | 4.709455e-47 |
MsG0380017866.01 | MsG0780036705.01 | 0.876730 | 1.106484e-68 | 5.422567e-65 |
MsG0380017866.01 | MsG0780036813.01 | 0.838304 | 3.114327e-57 | 4.153892e-54 |
MsG0380017866.01 | MsG0780036964.01 | 0.804582 | 2.016221e-49 | 1.043427e-46 |
MsG0380017866.01 | MsG0780039258.01 | 0.845857 | 3.126760e-59 | 5.282225e-56 |
MsG0380017866.01 | MsG0780040445.01 | 0.802351 | 5.846675e-49 | 2.857768e-46 |
MsG0380017866.01 | MsG0780041294.01 | 0.830065 | 3.622360e-55 | 3.775353e-52 |
MsG0380017866.01 | MsG0780041345.01 | 0.814002 | 1.922889e-51 | 1.275063e-48 |
MsG0380017866.01 | MsG0880042294.01 | 0.807215 | 5.635957e-50 | 3.121016e-47 |
MsG0380017866.01 | MsG0880042314.01 | 0.813180 | 2.915998e-51 | 1.890846e-48 |
MsG0380017866.01 | MsG0880042581.01 | 0.822150 | 2.762315e-53 | 2.293069e-50 |
MsG0380017866.01 | MsG0880042915.01 | 0.830925 | 2.231591e-55 | 2.385200e-52 |
MsG0380017866.01 | MsG0880046285.01 | 0.826656 | 2.406397e-54 | 2.270854e-51 |
MsG0380017866.01 | MsG0880046321.01 | 0.860997 | 1.398116e-63 | 3.895877e-60 |
MsG0380017866.01 | MsG0880046328.01 | 0.810889 | 9.207726e-51 | 5.617869e-48 |
MsG0380017866.01 | MsG0880046575.01 | 0.840944 | 6.408174e-58 | 9.272067e-55 |
MsG0380017866.01 | MsG0880046930.01 | 0.807474 | 4.967167e-50 | 2.769281e-47 |
MsG0380017866.01 | MsG0880047038.01 | 0.806558 | 7.761045e-50 | 4.225467e-47 |
MsG0380017866.01 | MsG0880047286.01 | 0.833186 | 6.162790e-56 | 7.044018e-53 |
MsG0380017866.01 | MsG0880047427.01 | 0.801535 | 8.599777e-49 | 4.117072e-46 |
MsG0380017866.01 | MsG0880047448.01 | 0.857099 | 2.056121e-62 | 5.016951e-59 |
MsG0280007222.01 | MsG0380017866.01 | 0.841088 | 5.874599e-58 | 8.537189e-55 |
MsG0280009230.01 | MsG0380017866.01 | 0.851576 | 8.111263e-61 | 1.649046e-57 |
MsG0280009716.01 | MsG0380017866.01 | 0.808896 | 2.472128e-50 | 1.430507e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380017866.01.T01 | MTR_3g114070 | 80.833 | 360 | 18 | 4 | 1 | 347 | 1 | 322 | 0.0 | 577 |
MsG0380017866.01.T01 | MTR_6g069420 | 60.440 | 273 | 65 | 2 | 81 | 347 | 90 | 325 | 2.07e-113 | 332 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380017866.01.T01 | AT5G42150 | 53.803 | 355 | 112 | 7 | 1 | 345 | 1 | 313 | 5.97e-120 | 349 |
Find 87 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCCTTCTGCAACAAGGTTAA+AGG | 0.172768 | 3:+101648219 | MsG0380017866.01.T01:CDS |
TTGAAACAAAACAACTTCTT+TGG | 0.175581 | 3:-101648184 | None:intergenic |
TTCTACTTATGCACTCATTC+TGG | 0.244607 | 3:-101650336 | None:intergenic |
TCTAAGCGAGTTTCAACTTA+TGG | 0.245710 | 3:+101650363 | MsG0380017866.01.T01:three_prime_UTR |
GCAGCGACGTCATCGGATTT+AGG | 0.257070 | 3:+101648106 | MsG0380017866.01.T01:CDS |
CGCAGTTGAGTTGGCTCTTA+AGG | 0.280389 | 3:-101647980 | None:intergenic |
TTAGCAGATCTTGCTGTCTT+TGG | 0.282368 | 3:+101650209 | MsG0380017866.01.T01:CDS |
ACAGCAAGATCTGCTAAATT+AGG | 0.304403 | 3:-101650203 | None:intergenic |
GAACAATTGGTTGATTCTTC+AGG | 0.311379 | 3:+101648465 | MsG0380017866.01.T01:CDS |
TGAACAAGAAAGAGATTAAT+TGG | 0.326433 | 3:+101648403 | MsG0380017866.01.T01:CDS |
GGGTTAGTTGAAGTCAAATA+TGG | 0.327626 | 3:-101648036 | None:intergenic |
TGAAACAAAACAACTTCTTT+GGG | 0.331117 | 3:-101648183 | None:intergenic |
TTGAAGGGCCGAAAATTTCT+TGG | 0.349657 | 3:+101650055 | MsG0380017866.01.T01:CDS |
CGAGTTTCAACTTATGGATA+AGG | 0.368526 | 3:+101650369 | MsG0380017866.01.T01:three_prime_UTR |
AAAACAGTTCGATATATGTT+TGG | 0.371801 | 3:-101649170 | None:intergenic |
TGTTCTATTATTCATTATCA+TGG | 0.386374 | 3:+101650470 | MsG0380017866.01.T01:three_prime_UTR |
AGCACACAAGGATTGGGAAT+TGG | 0.394438 | 3:+101650279 | MsG0380017866.01.T01:CDS |
CACTGTTGATGGTGAACAAT+TGG | 0.398212 | 3:+101648452 | MsG0380017866.01.T01:CDS |
GTTAGACATAATTGATAAGT+TGG | 0.398968 | 3:+101648580 | MsG0380017866.01.T01:intron |
TCTGCATTCAAGTCATAATC+TGG | 0.405560 | 3:-101648617 | None:intergenic |
GAGAGGTTAGTGGCTAAGTA+TGG | 0.414660 | 3:+101649926 | MsG0380017866.01.T01:CDS |
AGTAACGTTTAATCGTGTTA+AGG | 0.414836 | 3:-101648266 | None:intergenic |
GTCATCGGATTTAGGTATTA+CGG | 0.419523 | 3:+101648114 | MsG0380017866.01.T01:CDS |
CCTCAAGTCAGGTCAAGATA+TGG | 0.432018 | 3:+101650253 | MsG0380017866.01.T01:CDS |
ATGGTAGAGCACACAAGGAT+TGG | 0.432114 | 3:+101650272 | MsG0380017866.01.T01:CDS |
GATGAGCGTCAGGCTTTGTA+TGG | 0.434040 | 3:+101650007 | MsG0380017866.01.T01:CDS |
CCCATTCGCCACCTCAAGTC+AGG | 0.439804 | 3:+101650242 | MsG0380017866.01.T01:CDS |
TTAATCTCTTTCTTGTTCAT+CGG | 0.452851 | 3:-101648399 | None:intergenic |
ACAGTGGGTTGAAGCTTTGA+AGG | 0.454177 | 3:+101650039 | MsG0380017866.01.T01:CDS |
CAGTTTGTATGAGAGGTTAG+TGG | 0.456133 | 3:+101649916 | MsG0380017866.01.T01:CDS |
TGAGTTGGCTCTTAAGGCTC+TGG | 0.456245 | 3:-101647974 | None:intergenic |
TGGTAGAGCACACAAGGATT+GGG | 0.466759 | 3:+101650273 | MsG0380017866.01.T01:CDS |
GTGCCTATTGTCACTGTTGA+TGG | 0.471196 | 3:+101648441 | MsG0380017866.01.T01:CDS |
ATCATGGTTGTATAATGTAT+TGG | 0.471908 | 3:+101650486 | MsG0380017866.01.T01:three_prime_UTR |
TTCGATTATATCACTACTAA+AGG | 0.473403 | 3:+101649209 | MsG0380017866.01.T01:CDS |
ACCTGACTTGAGGTGGCGAA+TGG | 0.476175 | 3:-101650243 | None:intergenic |
TCACCATCAACAGTGACAAT+AGG | 0.477717 | 3:-101648444 | None:intergenic |
TGCCGCCACTGCCACATCTC+CGG | 0.480271 | 3:+101648140 | MsG0380017866.01.T01:CDS |
CAATATAACTGATGAGCGTC+AGG | 0.488149 | 3:+101649997 | MsG0380017866.01.T01:CDS |
GAACAACAGAGGGAGTTGAT+TGG | 0.494915 | 3:-101648083 | None:intergenic |
TGCTCGAGGCGGTCGGAGGA+AGG | 0.495234 | 3:-101648010 | None:intergenic |
ACCTTTAACCTTGTTGCAGA+AGG | 0.501255 | 3:-101648220 | None:intergenic |
CGCCGGAGATGTGGCAGTGG+CGG | 0.501678 | 3:-101648142 | None:intergenic |
CCAGCGTTTCTAGATTATCA+TGG | 0.503632 | 3:+101648348 | MsG0380017866.01.T01:CDS |
TAATTGATAAGTTGGTCAAA+AGG | 0.506338 | 3:+101648588 | MsG0380017866.01.T01:CDS |
CATAATGTTCTGTAAAATCC+AGG | 0.510746 | 3:+101650522 | MsG0380017866.01.T01:three_prime_UTR |
GCAATTTCAGTTTGTATGAG+AGG | 0.510811 | 3:+101649909 | MsG0380017866.01.T01:CDS |
CCTGACTTGAGGTGGCGAAT+GGG | 0.516805 | 3:-101650242 | None:intergenic |
TCTGAGATGGAAAATGCAGT+TGG | 0.518885 | 3:+101650305 | MsG0380017866.01.T01:CDS |
TATTGTTGTTTATACATACC+TGG | 0.521408 | 3:-101650540 | None:intergenic |
GATGGAAAATGCAGTTGGAC+AGG | 0.523361 | 3:+101650310 | MsG0380017866.01.T01:CDS |
GGCTCTTAAGGCTCTGGCAA+TGG | 0.525688 | 3:-101647968 | None:intergenic |
AGAAGCAAACTTATTTAATG+TGG | 0.530184 | 3:-101650410 | None:intergenic |
GTTGTTCGCAGCGACGTCAT+CGG | 0.536710 | 3:+101648099 | MsG0380017866.01.T01:CDS |
GGTGGAAGCCGCAGTTGAGT+TGG | 0.538953 | 3:-101647989 | None:intergenic |
GTATGGAGCTGCTGAACAGT+GGG | 0.539220 | 3:+101650024 | MsG0380017866.01.T01:CDS |
AACAGAGGGAGTTGATTGGT+TGG | 0.543179 | 3:-101648079 | None:intergenic |
GGTTAGTGGCTAAGTATGGT+GGG | 0.551859 | 3:+101649930 | MsG0380017866.01.T01:CDS |
TGTATGGAGCTGCTGAACAG+TGG | 0.557881 | 3:+101650023 | MsG0380017866.01.T01:CDS |
CCTTTAACCTTGTTGCAGAA+GGG | 0.563167 | 3:-101648219 | None:intergenic |
CCATGATAATCTAGAAACGC+TGG | 0.563828 | 3:-101648348 | None:intergenic |
GAGCTGCTCGAGGCGGTCGG+AGG | 0.571364 | 3:-101648014 | None:intergenic |
AGCTTGTCCCTTCTGCAACA+AGG | 0.579776 | 3:+101648212 | MsG0380017866.01.T01:CDS |
AGGTTAGTGGCTAAGTATGG+TGG | 0.582553 | 3:+101649929 | MsG0380017866.01.T01:CDS |
TAATTGGTCTCATTACAAGA+AGG | 0.583029 | 3:+101648419 | MsG0380017866.01.T01:CDS |
CCATATCTTGACCTGACTTG+AGG | 0.583256 | 3:-101650253 | None:intergenic |
TCTCTTAGACACGAAATACA+TGG | 0.584697 | 3:-101649960 | None:intergenic |
ATGGAGCTGCTCGAGGCGGT+CGG | 0.588493 | 3:-101648017 | None:intergenic |
TCGAGGCGGTCGGAGGAAGG+TGG | 0.590975 | 3:-101648007 | None:intergenic |
GTCAAATATGGAGCTGCTCG+AGG | 0.596084 | 3:-101648024 | None:intergenic |
CAGTGGGTTGAAGCTTTGAA+GGG | 0.598125 | 3:+101650040 | MsG0380017866.01.T01:CDS |
AAGATATGGTAGAGCACACA+AGG | 0.602564 | 3:+101650267 | MsG0380017866.01.T01:CDS |
ATGCAGATGAAGAAAAGAAG+TGG | 0.611944 | 3:+101648633 | MsG0380017866.01.T01:CDS |
TTGCGCCGGAGATGTGGCAG+TGG | 0.613004 | 3:-101648145 | None:intergenic |
ACGTCGCTGCGAACAACAGA+GGG | 0.620026 | 3:-101648093 | None:intergenic |
TGGTATTCAGTACAAAGTGG+TGG | 0.629118 | 3:+101648368 | MsG0380017866.01.T01:CDS |
ACTGAGCTAGCAAGAATGAG+AGG | 0.632041 | 3:+101647928 | None:intergenic |
GTTAGTGGCTAAGTATGGTG+GGG | 0.646752 | 3:+101649931 | MsG0380017866.01.T01:CDS |
TATAATGTATTGGTGATCTG+TGG | 0.657602 | 3:+101650496 | MsG0380017866.01.T01:three_prime_UTR |
TATCTTGACCTGACTTGAGG+TGG | 0.659112 | 3:-101650250 | None:intergenic |
GCAAGAATGAGAGGACTCAA+CGG | 0.662333 | 3:+101647937 | None:intergenic |
GACGTCGCTGCGAACAACAG+AGG | 0.662716 | 3:-101648094 | None:intergenic |
CTTAAGAGCCAACTCAACTG+CGG | 0.672048 | 3:+101647981 | MsG0380017866.01.T01:CDS |
TCATGGTATTCAGTACAAAG+TGG | 0.680108 | 3:+101648365 | MsG0380017866.01.T01:CDS |
TGATAATCTAGAAACGCTGG+AGG | 0.683447 | 3:-101648345 | None:intergenic |
TAGGTGGGTAGATAATCACT+TGG | 0.683522 | 3:+101649133 | MsG0380017866.01.T01:intron |
AAATATGGAGCTGCTCGAGG+CGG | 0.687546 | 3:-101648021 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATCTTTTTTAGTTAAAATA+CGG | + | Chr3:101648722-101648741 | MsG0380017866.01.T01:intron | 10.0% |
!!! | TTTTTTCTTTCTTTTTATAT+TGG | + | Chr3:101649041-101649060 | MsG0380017866.01.T01:intron | 10.0% |
!! | TTTGTTGATATTATAACAAT+GGG | + | Chr3:101649413-101649432 | MsG0380017866.01.T01:intron | 15.0% |
!!! | AATAATCATTTGTTAAATCA+AGG | - | Chr3:101649095-101649114 | None:intergenic | 15.0% |
!!! | ATTTGTTGATATTATAACAA+TGG | + | Chr3:101649412-101649431 | MsG0380017866.01.T01:intron | 15.0% |
!!! | GTTATCAGATTATTTTTTTT+TGG | - | Chr3:101649366-101649385 | None:intergenic | 15.0% |
!! | AAGTTATCAGATCTTAAAAA+AGG | - | Chr3:101649337-101649356 | None:intergenic | 20.0% |
!! | AATATACAATAAACCACAAA+TGG | - | Chr3:101648515-101648534 | None:intergenic | 20.0% |
!! | AATATTTATCAACCATTACA+AGG | + | Chr3:101649794-101649813 | MsG0380017866.01.T01:intron | 20.0% |
!! | ATATTTATCAACCATTACAA+GGG | + | Chr3:101649795-101649814 | MsG0380017866.01.T01:intron | 20.0% |
!! | ATCAATTATGTCTAACAAAA+GGG | - | Chr3:101648576-101648595 | None:intergenic | 20.0% |
!! | GATAAATATTGCTTCATAAA+AGG | - | Chr3:101649784-101649803 | None:intergenic | 20.0% |
!! | TATCAATTATGTCTAACAAA+AGG | - | Chr3:101648577-101648596 | None:intergenic | 20.0% |
!! | TGTTCTATTATTCATTATCA+TGG | + | Chr3:101650470-101650489 | MsG0380017866.01.T01:three_prime_UTR | 20.0% |
!!! | AGATTAAGTAGATATGATTT+TGG | + | Chr3:101649069-101649088 | MsG0380017866.01.T01:intron | 20.0% |
!!! | TGTTACATTCAGTTATTTTA+TGG | + | Chr3:101649387-101649406 | MsG0380017866.01.T01:intron | 20.0% |
! | AAAACAGTTCGATATATGTT+TGG | - | Chr3:101649173-101649192 | None:intergenic | 25.0% |
! | ACTACTAAAAATTCTCTACT+TGG | - | Chr3:101648933-101648952 | None:intergenic | 25.0% |
! | AGAAGCAAACTTATTTAATG+TGG | - | Chr3:101650413-101650432 | None:intergenic | 25.0% |
! | AGCTTAATATTTGATGAATC+AGG | - | Chr3:101649483-101649502 | None:intergenic | 25.0% |
! | ATAAAGAGCAGAAATAGAAA+AGG | - | Chr3:101649860-101649879 | None:intergenic | 25.0% |
! | ATCATGGTTGTATAATGTAT+TGG | + | Chr3:101650486-101650505 | MsG0380017866.01.T01:three_prime_UTR | 25.0% |
! | GGAAAAAATGCAAAAACAAT+AGG | - | Chr3:101648327-101648346 | None:intergenic | 25.0% |
! | GTATCATATCTCAGTTATTA+TGG | - | Chr3:101650099-101650118 | None:intergenic | 25.0% |
! | GTTAGACATAATTGATAAGT+TGG | + | Chr3:101648580-101648599 | MsG0380017866.01.T01:intron | 25.0% |
! | GTTCAAATAAACAAGAAGAA+AGG | - | Chr3:101648684-101648703 | None:intergenic | 25.0% |
! | TAACTAAAAAAGATAGCTAG+AGG | - | Chr3:101648717-101648736 | None:intergenic | 25.0% |
! | TCAATTATGTCTAACAAAAG+GGG | - | Chr3:101648575-101648594 | None:intergenic | 25.0% |
! | TCACAAATATAAGCACTTAA+GGG | - | Chr3:101650162-101650181 | None:intergenic | 25.0% |
! | TGAAACAAAACAACTTCTTT+GGG | - | Chr3:101648186-101648205 | None:intergenic | 25.0% |
! | TGAACAAGAAAGAGATTAAT+TGG | + | Chr3:101648403-101648422 | MsG0380017866.01.T01:CDS | 25.0% |
! | TTAATATTTGATGAATCAGG+AGG | - | Chr3:101649480-101649499 | None:intergenic | 25.0% |
! | TTAATCTCTTTCTTGTTCAT+CGG | - | Chr3:101648402-101648421 | None:intergenic | 25.0% |
! | TTATATCACTACTAAAGGTA+AGG | + | Chr3:101649214-101649233 | MsG0380017866.01.T01:intron | 25.0% |
! | TTCACAAATATAAGCACTTA+AGG | - | Chr3:101650163-101650182 | None:intergenic | 25.0% |
! | TTCGATTATATCACTACTAA+AGG | + | Chr3:101649209-101649228 | MsG0380017866.01.T01:CDS | 25.0% |
! | TTGAAACAAAACAACTTCTT+TGG | - | Chr3:101648187-101648206 | None:intergenic | 25.0% |
!! | GTGCTTATATTTGTGAATTT+TGG | + | Chr3:101650166-101650185 | MsG0380017866.01.T01:intron | 25.0% |
!! | TGAACATACCAAGAAATTTT+CGG | - | Chr3:101650066-101650085 | None:intergenic | 25.0% |
!!! | AACATACAGCTTTAAAAAGA+TGG | - | Chr3:101649550-101649569 | None:intergenic | 25.0% |
!!! | TAATTGATAAGTTGGTCAAA+AGG | + | Chr3:101648588-101648607 | MsG0380017866.01.T01:CDS | 25.0% |
!!! | TAGAGTTATTTTTCAAACTG+AGG | - | Chr3:101649697-101649716 | None:intergenic | 25.0% |
!!! | TATTGTTGTTTATACATACC+TGG | - | Chr3:101650543-101650562 | None:intergenic | 25.0% |
!!! | TTAAAGCTGTATGTTTTGAA+AGG | + | Chr3:101649555-101649574 | MsG0380017866.01.T01:intron | 25.0% |
!!! | TTATATTTGTGAATTTTGGC+AGG | + | Chr3:101650170-101650189 | MsG0380017866.01.T01:intron | 25.0% |
!!! | TTTGTAATGGATCTCTAAAT+CGG | - | Chr3:101648875-101648894 | None:intergenic | 25.0% |
AAAAGTAATCACCCTTGTAA+TGG | - | Chr3:101649809-101649828 | None:intergenic | 30.0% | |
AAAGGAATTATCTTCGCATT+TGG | - | Chr3:101649319-101649338 | None:intergenic | 30.0% | |
AATAATCTCATAAATGCCCA+TGG | - | Chr3:101648994-101649013 | None:intergenic | 30.0% | |
AGTAACGTTTAATCGTGTTA+AGG | - | Chr3:101648269-101648288 | None:intergenic | 30.0% | |
CAATTATGTCTAACAAAAGG+GGG | - | Chr3:101648574-101648593 | None:intergenic | 30.0% | |
CATAATGTTCTGTAAAATCC+AGG | + | Chr3:101650522-101650541 | MsG0380017866.01.T01:three_prime_UTR | 30.0% | |
CATCAAATATTAAGCTGTCT+TGG | + | Chr3:101649487-101649506 | MsG0380017866.01.T01:intron | 30.0% | |
CCATGTTGTCGAAAAAAAAA+AGG | - | Chr3:101650569-101650588 | None:intergenic | 30.0% | |
CTACATAGACTGAAATATTC+CGG | + | Chr3:101648904-101648923 | MsG0380017866.01.T01:intron | 30.0% | |
CTTGTTCATATTTCCATTTG+TGG | + | Chr3:101648499-101648518 | MsG0380017866.01.T01:intron | 30.0% | |
TGGGCATTTATGAGATTATT+AGG | + | Chr3:101648994-101649013 | MsG0380017866.01.T01:intron | 30.0% | |
TTATGAGATTATTAGGAGTC+TGG | + | Chr3:101649001-101649020 | MsG0380017866.01.T01:intron | 30.0% | |
! | CAATTGCAATCTAAAACCAT+GGG | + | Chr3:101648975-101648994 | MsG0380017866.01.T01:intron | 30.0% |
! | GTAGTGACTGAATTTTGTAA+TGG | - | Chr3:101648888-101648907 | None:intergenic | 30.0% |
! | TAATTGGTCTCATTACAAGA+AGG | + | Chr3:101648419-101648438 | MsG0380017866.01.T01:CDS | 30.0% |
! | TATAATGTATTGGTGATCTG+TGG | + | Chr3:101650496-101650515 | MsG0380017866.01.T01:three_prime_UTR | 30.0% |
!! | TTTGCTGTGACTTGTTATAT+AGG | + | Chr3:101649114-101649133 | MsG0380017866.01.T01:intron | 30.0% |
!!! | CCTTTTTTTTTTCGACAACA+TGG | + | Chr3:101650566-101650585 | MsG0380017866.01.T01:three_prime_UTR | 30.0% |
!!! | TTTTTTTTCGACAACATGGT+TGG | + | Chr3:101650570-101650589 | MsG0380017866.01.T01:three_prime_UTR | 30.0% |
AAAGATGGCTCAGTTGAATA+TGG | - | Chr3:101649535-101649554 | None:intergenic | 35.0% | |
ACAGCAAGATCTGCTAAATT+AGG | - | Chr3:101650206-101650225 | None:intergenic | 35.0% | |
AGAGCAGAAATAGAAAAGGA+AGG | - | Chr3:101649856-101649875 | None:intergenic | 35.0% | |
ATGCAGATGAAGAAAAGAAG+TGG | + | Chr3:101648633-101648652 | MsG0380017866.01.T01:CDS | 35.0% | |
CGAGTTTCAACTTATGGATA+AGG | + | Chr3:101650369-101650388 | MsG0380017866.01.T01:three_prime_UTR | 35.0% | |
GCAATTTCAGTTTGTATGAG+AGG | + | Chr3:101649909-101649928 | MsG0380017866.01.T01:CDS | 35.0% | |
GTCATCGGATTTAGGTATTA+CGG | + | Chr3:101648114-101648133 | MsG0380017866.01.T01:CDS | 35.0% | |
TATAAGCACTTAAGGGTTAC+AGG | - | Chr3:101650155-101650174 | None:intergenic | 35.0% | |
TCATGGTATTCAGTACAAAG+TGG | + | Chr3:101648365-101648384 | MsG0380017866.01.T01:CDS | 35.0% | |
TCTAAGCGAGTTTCAACTTA+TGG | + | Chr3:101650363-101650382 | MsG0380017866.01.T01:three_prime_UTR | 35.0% | |
TCTCTTAGACACGAAATACA+TGG | - | Chr3:101649963-101649982 | None:intergenic | 35.0% | |
TCTGCATTCAAGTCATAATC+TGG | - | Chr3:101648620-101648639 | None:intergenic | 35.0% | |
TGTATATTAAGCTGTCTCTG+TGG | + | Chr3:101649437-101649456 | MsG0380017866.01.T01:intron | 35.0% | |
TTAAAACCTTAGAAGAGCAG+TGG | - | Chr3:101648759-101648778 | None:intergenic | 35.0% | |
TTCTACTTATGCACTCATTC+TGG | - | Chr3:101650339-101650358 | None:intergenic | 35.0% | |
! | AAAATTCTCTACTTGGTGAC+CGG | - | Chr3:101648926-101648945 | None:intergenic | 35.0% |
! | GAACAATTGGTTGATTCTTC+AGG | + | Chr3:101648465-101648484 | MsG0380017866.01.T01:CDS | 35.0% |
! | GCAATTGCAATCTAAAACCA+TGG | + | Chr3:101648974-101648993 | MsG0380017866.01.T01:intron | 35.0% |
!! | CTGTGACTTGTTATATAGGT+GGG | + | Chr3:101649118-101649137 | MsG0380017866.01.T01:intron | 35.0% |
!! | GGGTTAGTTGAAGTCAAATA+TGG | - | Chr3:101648039-101648058 | None:intergenic | 35.0% |
AAAAGCAAGAACTTGGAGTG+AGG | - | Chr3:101649671-101649690 | None:intergenic | 40.0% | |
AACTGAGTACGAAAAGCAAG+AGG | - | Chr3:101649733-101649752 | None:intergenic | 40.0% | |
AAGATATGGTAGAGCACACA+AGG | + | Chr3:101650267-101650286 | MsG0380017866.01.T01:CDS | 40.0% | |
ACCTTTAACCTTGTTGCAGA+AGG | - | Chr3:101648223-101648242 | None:intergenic | 40.0% | |
CAATATAACTGATGAGCGTC+AGG | + | Chr3:101649997-101650016 | MsG0380017866.01.T01:CDS | 40.0% | |
CAGTTTGTATGAGAGGTTAG+TGG | + | Chr3:101649916-101649935 | MsG0380017866.01.T01:CDS | 40.0% | |
CCATGATAATCTAGAAACGC+TGG | - | Chr3:101648351-101648370 | None:intergenic | 40.0% | |
CCTTTAACCTTGTTGCAGAA+GGG | - | Chr3:101648222-101648241 | None:intergenic | 40.0% | |
GAGGATGAAAAGCAAGAACT+TGG | - | Chr3:101649678-101649697 | None:intergenic | 40.0% | |
GATGTTGTAGAGAGTAGTTG+TGG | + | Chr3:101648788-101648807 | MsG0380017866.01.T01:intron | 40.0% | |
TAGGTGGGTAGATAATCACT+TGG | + | Chr3:101649133-101649152 | MsG0380017866.01.T01:intron | 40.0% | |
TCACCATCAACAGTGACAAT+AGG | - | Chr3:101648447-101648466 | None:intergenic | 40.0% | |
TCCATAGCATGATAGACTTC+AGG | - | Chr3:101649883-101649902 | None:intergenic | 40.0% | |
TCCTGAAGTCTATCATGCTA+TGG | + | Chr3:101649879-101649898 | MsG0380017866.01.T01:intron | 40.0% | |
TCGCATTTGGAAAATGACAG+AGG | - | Chr3:101649306-101649325 | None:intergenic | 40.0% | |
TCTATCATGCTATGGAGTGT+AGG | + | Chr3:101649887-101649906 | MsG0380017866.01.T01:intron | 40.0% | |
TGATAATCTAGAAACGCTGG+AGG | - | Chr3:101648348-101648367 | None:intergenic | 40.0% | |
TGGTATTCAGTACAAAGTGG+TGG | + | Chr3:101648368-101648387 | MsG0380017866.01.T01:CDS | 40.0% | |
TTGAAGGGCCGAAAATTTCT+TGG | + | Chr3:101650055-101650074 | MsG0380017866.01.T01:CDS | 40.0% | |
TTTGAAAGGATACCAGTCGA+GGG | + | Chr3:101649569-101649588 | MsG0380017866.01.T01:intron | 40.0% | |
! | AGCGATCAACGAGATTTTGA+GGG | - | Chr3:101648059-101648078 | None:intergenic | 40.0% |
! | CCAGCGTTTCTAGATTATCA+TGG | + | Chr3:101648348-101648367 | MsG0380017866.01.T01:CDS | 40.0% |
! | TCTGAGATGGAAAATGCAGT+TGG | + | Chr3:101650305-101650324 | MsG0380017866.01.T01:CDS | 40.0% |
! | TTAGCAGATCTTGCTGTCTT+TGG | + | Chr3:101650209-101650228 | MsG0380017866.01.T01:CDS | 40.0% |
!! | CACTGTTGATGGTGAACAAT+TGG | + | Chr3:101648452-101648471 | MsG0380017866.01.T01:CDS | 40.0% |
!! | GCTGTGACTTGTTATATAGG+TGG | + | Chr3:101649117-101649136 | MsG0380017866.01.T01:intron | 40.0% |
!! | GTGAATTTTGGCAGGTGATT+TGG | + | Chr3:101650178-101650197 | MsG0380017866.01.T01:intron | 40.0% |
!! | TTGAAGCTATTTTGTTGCGC+CGG | - | Chr3:101648162-101648181 | None:intergenic | 40.0% |
!! | TTTTGAAAGGATACCAGTCG+AGG | + | Chr3:101649568-101649587 | MsG0380017866.01.T01:intron | 40.0% |
!!! | TGGGAATTGGTTTTCTGAGA+TGG | + | Chr3:101650292-101650311 | MsG0380017866.01.T01:CDS | 40.0% |
AAGGAAGGCAGCAGACAATA+AGG | - | Chr3:101649841-101649860 | None:intergenic | 45.0% | |
AGCACACAAGGATTGGGAAT+TGG | + | Chr3:101650279-101650298 | MsG0380017866.01.T01:CDS | 45.0% | |
AGGAAGGCAGCAGACAATAA+GGG | - | Chr3:101649840-101649859 | None:intergenic | 45.0% | |
AGGTTAGTGGCTAAGTATGG+TGG | + | Chr3:101649929-101649948 | MsG0380017866.01.T01:CDS | 45.0% | |
ATGGTAGAGCACACAAGGAT+TGG | + | Chr3:101650272-101650291 | MsG0380017866.01.T01:CDS | 45.0% | |
CCCTTCTGCAACAAGGTTAA+AGG | + | Chr3:101648219-101648238 | MsG0380017866.01.T01:CDS | 45.0% | |
CCTCAAGTCAGGTCAAGATA+TGG | + | Chr3:101650253-101650272 | MsG0380017866.01.T01:CDS | 45.0% | |
CTTAAGAGCCAACTCAACTG+CGG | + | Chr3:101647981-101648000 | MsG0380017866.01.T01:CDS | 45.0% | |
CTTGTACCACTGCTCTTCTA+AGG | + | Chr3:101648750-101648769 | MsG0380017866.01.T01:intron | 45.0% | |
GAGAGGTTAGTGGCTAAGTA+TGG | + | Chr3:101649926-101649945 | MsG0380017866.01.T01:CDS | 45.0% | |
GATGGAAAATGCAGTTGGAC+AGG | + | Chr3:101650310-101650329 | MsG0380017866.01.T01:CDS | 45.0% | |
GGTTAGTGGCTAAGTATGGT+GGG | + | Chr3:101649930-101649949 | MsG0380017866.01.T01:CDS | 45.0% | |
GTGCCTATTGTCACTGTTGA+TGG | + | Chr3:101648441-101648460 | MsG0380017866.01.T01:CDS | 45.0% | |
GTTAGTGGCTAAGTATGGTG+GGG | + | Chr3:101649931-101649950 | MsG0380017866.01.T01:CDS | 45.0% | |
TGGTAGAGCACACAAGGATT+GGG | + | Chr3:101650273-101650292 | MsG0380017866.01.T01:CDS | 45.0% | |
TTAAGGGTTACAGGTCTTCG+AGG | - | Chr3:101650146-101650165 | None:intergenic | 45.0% | |
! | AACAGAGGGAGTTGATTGGT+TGG | - | Chr3:101648082-101648101 | None:intergenic | 45.0% |
! | CCATATCTTGACCTGACTTG+AGG | - | Chr3:101650256-101650275 | None:intergenic | 45.0% |
! | GAACAACAGAGGGAGTTGAT+TGG | - | Chr3:101648086-101648105 | None:intergenic | 45.0% |
! | GAGCGATCAACGAGATTTTG+AGG | - | Chr3:101648060-101648079 | None:intergenic | 45.0% |
! | TATCTTGACCTGACTTGAGG+TGG | - | Chr3:101650253-101650272 | None:intergenic | 45.0% |
!! | ACAGTGGGTTGAAGCTTTGA+AGG | + | Chr3:101650039-101650058 | MsG0380017866.01.T01:CDS | 45.0% |
!! | CAGTGGGTTGAAGCTTTGAA+GGG | + | Chr3:101650040-101650059 | MsG0380017866.01.T01:CDS | 45.0% |
AAATACCTCTCTCCCTCGAC+TGG | - | Chr3:101649584-101649603 | None:intergenic | 50.0% | |
AAATATGGAGCTGCTCGAGG+CGG | - | Chr3:101648024-101648043 | None:intergenic | 50.0% | |
AGAAAAGAAGTGGCGCGAGT+AGG | + | Chr3:101648643-101648662 | MsG0380017866.01.T01:intron | 50.0% | |
AGCTTGTCCCTTCTGCAACA+AGG | + | Chr3:101648212-101648231 | MsG0380017866.01.T01:CDS | 50.0% | |
GTATGGAGCTGCTGAACAGT+GGG | + | Chr3:101650024-101650043 | MsG0380017866.01.T01:CDS | 50.0% | |
GTCAAATATGGAGCTGCTCG+AGG | - | Chr3:101648027-101648046 | None:intergenic | 50.0% | |
TGTATGGAGCTGCTGAACAG+TGG | + | Chr3:101650023-101650042 | MsG0380017866.01.T01:CDS | 50.0% | |
! | ATTTTGTTGCGCCGGAGATG+TGG | - | Chr3:101648154-101648173 | None:intergenic | 50.0% |
! | GATGAGCGTCAGGCTTTGTA+TGG | + | Chr3:101650007-101650026 | MsG0380017866.01.T01:CDS | 50.0% |
! | TGAGTTGGCTCTTAAGGCTC+TGG | - | Chr3:101647977-101647996 | None:intergenic | 50.0% |
!! | CGCAGTTGAGTTGGCTCTTA+AGG | - | Chr3:101647983-101648002 | None:intergenic | 50.0% |
ACGTCGCTGCGAACAACAGA+GGG | - | Chr3:101648096-101648115 | None:intergenic | 55.0% | |
GCAGCGACGTCATCGGATTT+AGG | + | Chr3:101648106-101648125 | MsG0380017866.01.T01:CDS | 55.0% | |
GTTGTTCGCAGCGACGTCAT+CGG | + | Chr3:101648099-101648118 | MsG0380017866.01.T01:CDS | 55.0% | |
! | ACCTGACTTGAGGTGGCGAA+TGG | - | Chr3:101650246-101650265 | None:intergenic | 55.0% |
! | CCTGACTTGAGGTGGCGAAT+GGG | - | Chr3:101650245-101650264 | None:intergenic | 55.0% |
! | GGCTCTTAAGGCTCTGGCAA+TGG | - | Chr3:101647971-101647990 | None:intergenic | 55.0% |
CCCATTCGCCACCTCAAGTC+AGG | + | Chr3:101650242-101650261 | MsG0380017866.01.T01:CDS | 60.0% | |
GACGTCGCTGCGAACAACAG+AGG | - | Chr3:101648097-101648116 | None:intergenic | 60.0% | |
GGATACCAGTCGAGGGAGAG+AGG | + | Chr3:101649576-101649595 | MsG0380017866.01.T01:intron | 60.0% | |
GGTGGAAGCCGCAGTTGAGT+TGG | - | Chr3:101647992-101648011 | None:intergenic | 60.0% | |
ATGGAGCTGCTCGAGGCGGT+CGG | - | Chr3:101648020-101648039 | None:intergenic | 65.0% | |
TGCCGCCACTGCCACATCTC+CGG | + | Chr3:101648140-101648159 | MsG0380017866.01.T01:CDS | 65.0% | |
TTGCGCCGGAGATGTGGCAG+TGG | - | Chr3:101648148-101648167 | None:intergenic | 65.0% | |
CGCCGGAGATGTGGCAGTGG+CGG | - | Chr3:101648145-101648164 | None:intergenic | 70.0% | |
TCGAGGCGGTCGGAGGAAGG+TGG | - | Chr3:101648010-101648029 | None:intergenic | 70.0% | |
TGCTCGAGGCGGTCGGAGGA+AGG | - | Chr3:101648013-101648032 | None:intergenic | 70.0% | |
GAGCTGCTCGAGGCGGTCGG+AGG | - | Chr3:101648017-101648036 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr3 | gene | 101647943 | 101650596 | 101647943 | ID=MsG0380017866.01;Name=MsG0380017866.01 |
Chr3 | mRNA | 101647943 | 101650596 | 101647943 | ID=MsG0380017866.01.T01;Parent=MsG0380017866.01;Name=MsG0380017866.01.T01;_AED=0.49;_eAED=0.54;_QI=0|1|0.8|1|1|1|5|244|347 |
Chr3 | exon | 101647943 | 101648486 | 101647943 | ID=MsG0380017866.01.T01:exon:2929;Parent=MsG0380017866.01.T01 |
Chr3 | exon | 101648585 | 101648660 | 101648585 | ID=MsG0380017866.01.T01:exon:2930;Parent=MsG0380017866.01.T01 |
Chr3 | exon | 101649136 | 101649230 | 101649136 | ID=MsG0380017866.01.T01:exon:2931;Parent=MsG0380017866.01.T01 |
Chr3 | exon | 101649909 | 101650076 | 101649909 | ID=MsG0380017866.01.T01:exon:2932;Parent=MsG0380017866.01.T01 |
Chr3 | exon | 101650192 | 101650596 | 101650192 | ID=MsG0380017866.01.T01:exon:2933;Parent=MsG0380017866.01.T01 |
Chr3 | CDS | 101647943 | 101648486 | 101647943 | ID=MsG0380017866.01.T01:cds;Parent=MsG0380017866.01.T01 |
Chr3 | CDS | 101648585 | 101648660 | 101648585 | ID=MsG0380017866.01.T01:cds;Parent=MsG0380017866.01.T01 |
Chr3 | CDS | 101649136 | 101649230 | 101649136 | ID=MsG0380017866.01.T01:cds;Parent=MsG0380017866.01.T01 |
Chr3 | CDS | 101649909 | 101650076 | 101649909 | ID=MsG0380017866.01.T01:cds;Parent=MsG0380017866.01.T01 |
Chr3 | CDS | 101650192 | 101650352 | 101650192 | ID=MsG0380017866.01.T01:cds;Parent=MsG0380017866.01.T01 |
Chr3 | three_prime_UTR | 101650353 | 101650596 | 101650353 | ID=MsG0380017866.01.T01:three_prime_utr;Parent=MsG0380017866.01.T01 |
Gene Sequence |
Protein sequence |