AlfalfaGEDB | MsG0880043533.01

M. sativa cultivar ZhongmuNo.1 / MsG0880043533.01

KEGG: -
GO: -
PFAM: PF00226

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043533.01.T01	XP_003627750.1	98.701	77	1	0	49	125	1	77	1.21E-45	161

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043533.01.T01	Q8GYX8	69.737	76	23	0	49	124	1	76	1.99E-30	115

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043533.01.T01	G7LEJ1	98.701	77	1	0	49	125	1	77	5.78e-46	161

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048058.01	MsG0880043533.01	0.844717	6.361343e-59	1.036042e-55
MsG0080048178.01	MsG0880043533.01	0.823366	1.439735e-53	1.237005e-50
MsG0080048602.01	MsG0880043533.01	0.841994	3.390543e-58	5.069242e-55
MsG0080048765.01	MsG0880043533.01	0.847184	1.357952e-59	2.394127e-56
MsG0180000001.01	MsG0880043533.01	0.815206	1.041138e-51	7.132084e-49
MsG0180000101.01	MsG0880043533.01	0.844980	5.402023e-59	8.872094e-56
MsG0180000144.01	MsG0880043533.01	0.817892	2.605637e-52	1.921265e-49
MsG0180000146.01	MsG0880043533.01	0.832083	1.157299e-55	1.280010e-52
MsG0180000235.01	MsG0880043533.01	0.831999	1.214224e-55	1.339784e-52
MsG0180000300.01	MsG0880043533.01	0.811354	7.303023e-51	4.510277e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043533.01.T01	MTR_8g037810	98.701	77	1	0	49	125	1	77	1.47e-49	161
MsG0880043533.01.T01	MTR_5g004570	72.368	76	21	0	49	124	1	76	2.03e-34	119
MsG0880043533.01.T01	MTR_1g029470	66.234	77	26	0	49	125	1	77	1.36e-27	104
MsG0880043533.01.T01	MTR_1g029460	62.338	77	29	0	49	125	1	77	4.97e-24	95.1
MsG0880043533.01.T01	MTR_4g023470	55.072	69	31	0	54	122	86	154	2.09e-18	79.7
MsG0880043533.01.T01	MTR_3g027580	52.308	65	31	0	55	119	90	154	4.68e-17	76.3
MsG0880043533.01.T01	MTR_8g006430	56.164	73	28	2	53	125	13	81	4.93e-16	73.2
MsG0880043533.01.T01	MTR_7g092380	43.820	89	45	1	31	119	4	87	2.22e-15	70.5
MsG0880043533.01.T01	MTR_7g109340	50.000	72	36	0	54	125	26	97	4.38e-14	67.4
MsG0880043533.01.T01	MTR_3g087030	50.725	69	33	1	55	123	83	150	7.48e-14	67.0

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043533.01.T01	AT4G39150	76.623	77	18	49	125	1	77	3.26e-37	129
MsG0880043533.01.T01	AT4G39150	76.623	77	18	49	125	1	77	3.26e-37	129
MsG0880043533.01.T01	AT4G39150	76.623	77	18	49	125	1	77	3.26e-37	129
MsG0880043533.01.T01	AT2G21510	75.325	77	19	49	125	1	77	2.17e-35	124
MsG0880043533.01.T01	AT2G21510	75.325	77	19	49	125	1	77	3.12e-35	124
MsG0880043533.01.T01	AT2G21510	75.325	77	19	49	125	1	77	3.12e-35	124
MsG0880043533.01.T01	AT2G21510	75.325	77	19	49	125	1	77	3.36e-35	124
MsG0880043533.01.T01	AT2G21510	75.325	77	19	49	125	1	77	3.36e-35	124
MsG0880043533.01.T01	AT1G21080	71.053	76	22	49	124	1	76	4.56e-33	119
MsG0880043533.01.T01	AT1G21080	71.053	76	22	49	124	1	76	4.82e-33	119

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Find 19 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACTGCTTACTATGATACATT+AGG	0.437505	8:-26242328	MsG0880043533.01.T01:CDS
AGGATCGCTTAAAACCTGGT+AGG	0.657593	8:+26240197	None:intergenic
ATAGATAATTCATGATTGAT+TGG	0.363747	8:+26243518	None:intergenic
CATGAATTATCTATGAAGTA+TGG	0.337418	8:-26243509	MsG0880043533.01.T01:CDS
CATTGGAGTATAATTATCGG+TGG	0.624481	8:+26243544	None:intergenic
CGTAGACATGTTCATGTTCA+GGG	0.485055	8:+26243472	None:intergenic
GCTGCTTGGTGAGGCCTACC+AGG	0.462884	8:-26240211	MsG0880043533.01.T01:CDS
GGAGTATAATTATCGGTGGA+TGG	0.573162	8:+26243548	None:intergenic
GTTGCGTTAGAGATCCAAAA+TGG	0.417404	8:-26243434	MsG0880043533.01.T01:intron
TAGTGTTGATGCTTCTGCTG+CGG	0.636211	8:-26242302	MsG0880043533.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATGGAAGAAGGTTAGAA+GGG	+	Chr8:26243196-26243215	None:intergenic	30.0%
AAACTAACGAAATTCTACAG+TGG	+	Chr8:26242952-26242971	None:intergenic	30.0%
AACAATTCTTGCCTGTAAAA+TGG	+	Chr8:26243212-26243231	None:intergenic	30.0%
ACTGCTTACTATGATACATT+AGG	-	Chr8:26241369-26241388	MsG0880043533.01.T01:intron	30.0%
AGCATATGACAAAAATGGAA+AGG	-	Chr8:26243534-26243553	MsG0880043533.01.T01:CDS	30.0%
AGCTAACATAGTTCAATGAA+TGG	+	Chr8:26241932-26241951	None:intergenic	30.0%
AGTATTATGAAGCCAAAACA+TGG	+	Chr8:26243298-26243317	None:intergenic	30.0%
CATACATTCACTCTCTTATT+CGG	+	Chr8:26242218-26242237	None:intergenic	30.0%
GAAAGTGAAAAAGATGATGA+AGG	+	Chr8:26241247-26241266	None:intergenic	30.0%
GATATCAGAAAAAATGGTGA+AGG	-	Chr8:26241344-26241363	MsG0880043533.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	26240146	26243573	26240146	ID=MsG0880043533.01;Name=MsG0880043533.01
Chr8	mRNA	26240146	26243573	26240146	ID=MsG0880043533.01.T01;Parent=MsG0880043533.01;Name=MsG0880043533.01.T01;_AED=0.50;_eAED=0.69;_QI=0\|0.66\|0.25\|1\|1\|1\|4\|0\|125
Chr8	exon	26243435	26243573	26243435	ID=MsG0880043533.01.T01:exon:1432;Parent=MsG0880043533.01.T01
Chr8	exon	26242276	26242367	26242276	ID=MsG0880043533.01.T01:exon:1431;Parent=MsG0880043533.01.T01
Chr8	exon	26240440	26240499	26240440	ID=MsG0880043533.01.T01:exon:1430;Parent=MsG0880043533.01.T01
Chr8	exon	26240146	26240232	26240146	ID=MsG0880043533.01.T01:exon:1429;Parent=MsG0880043533.01.T01
Chr8	CDS	26243435	26243573	26243435	ID=MsG0880043533.01.T01:cds;Parent=MsG0880043533.01.T01
Chr8	CDS	26242276	26242367	26242276	ID=MsG0880043533.01.T01:cds;Parent=MsG0880043533.01.T01
Chr8	CDS	26240440	26240499	26240440	ID=MsG0880043533.01.T01:cds;Parent=MsG0880043533.01.T01
Chr8	CDS	26240146	26240232	26240146	ID=MsG0880043533.01.T01:cds;Parent=MsG0880043533.01.T01

Gene Sequence

>MsG0880043533.01.T01

ATGCCATCCACCGATAATTATACTCCAATGAGACCAATCAATCATGAATTATCTATGAAGTATGGACACAAAAACATGACCCTGAACATGAACATGTCTACGATGATAAGTGTTGACGTTGCGTTAGAGATCCAAAATGAAAAAATGGTGAAGGAAACTGCTTACTATGATACATTAGGTGTTAGTGTTGATGCTTCTGCTGCGGATATCAAAAAAGCTTATTATGTTAAGGCAAGAATTGTTCACCCTGATAAAAATCCTGGGGATCCCAAGGCTGCAGAAAATTTTCAGCTGCTTGGTGAGGCCTACCAGGTTTTAAGCGATCCTGAGAAGCGTGAAGCATATGACAAAAATGGAAAGGCAGCGGTGTCACAGTAA

Protein sequence

>MsG0880043533.01.T01

MPSTDNYTPMRPINHELSMKYGHKNMTLNMNMSTMISVDVALEIQNEKMVKETAYYDTLGVSVDASAADIKKAYYVKARIVHPDKNPGDPKAAENFQLLGEAYQVLSDPEKREAYDKNGKAAVSQ*