AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880043533.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043533.01.T01 MTR_8g037810 98.701 77 1 0 49 125 1 77 1.47e-49 161
MsG0880043533.01.T01 MTR_5g004570 72.368 76 21 0 49 124 1 76 2.03e-34 119
MsG0880043533.01.T01 MTR_1g029470 66.234 77 26 0 49 125 1 77 1.36e-27 104
MsG0880043533.01.T01 MTR_1g029460 62.338 77 29 0 49 125 1 77 4.97e-24 95.1
MsG0880043533.01.T01 MTR_4g023470 55.072 69 31 0 54 122 86 154 2.09e-18 79.7
MsG0880043533.01.T01 MTR_3g027580 52.308 65 31 0 55 119 90 154 4.68e-17 76.3
MsG0880043533.01.T01 MTR_8g006430 56.164 73 28 2 53 125 13 81 4.93e-16 73.2
MsG0880043533.01.T01 MTR_7g092380 43.820 89 45 1 31 119 4 87 2.22e-15 70.5
MsG0880043533.01.T01 MTR_7g109340 50.000 72 36 0 54 125 26 97 4.38e-14 67.4
MsG0880043533.01.T01 MTR_3g087030 50.725 69 33 1 55 123 83 150 7.48e-14 67.0
MsG0880043533.01.T01 MTR_4g023490 52.941 68 31 1 55 122 17 83 3.34e-13 65.1
MsG0880043533.01.T01 MTR_5g035770 48.529 68 35 0 56 123 27 94 4.93e-13 64.7
MsG0880043533.01.T01 MTR_5g065160 46.970 66 35 0 52 117 81 146 8.54e-13 63.9
MsG0880043533.01.T01 MTR_5g065160 46.970 66 35 0 52 117 80 145 8.60e-13 63.9
MsG0880043533.01.T01 MTR_5g065160 46.970 66 35 0 52 117 81 146 8.86e-13 63.9
MsG0880043533.01.T01 MTR_5g065160 46.970 66 35 0 52 117 74 139 9.94e-13 63.9
MsG0880043533.01.T01 MTR_2g087660 54.795 73 29 2 53 125 12 80 1.04e-12 63.5
MsG0880043533.01.T01 MTR_2g087660 54.795 73 29 2 53 125 12 80 1.08e-12 63.5
MsG0880043533.01.T01 MTR_1g110310 47.059 68 36 0 56 123 18 85 1.39e-12 63.2
MsG0880043533.01.T01 MTR_3g108020 45.833 72 38 1 55 125 5 76 1.65e-12 62.8
MsG0880043533.01.T01 MTR_1g052110 46.970 66 35 0 54 119 38 103 2.31e-12 62.4
MsG0880043533.01.T01 MTR_2g104030 47.826 69 35 1 55 123 71 138 2.60e-12 62.8
MsG0880043533.01.T01 MTR_2g014480 48.529 68 34 1 55 121 5 72 4.22e-12 62.0
MsG0880043533.01.T01 MTR_4g050420 54.795 73 29 2 53 125 12 80 5.60e-12 61.6
MsG0880043533.01.T01 MTR_4g015840 47.143 70 36 1 55 123 5 74 6.02e-12 61.2
MsG0880043533.01.T01 MTR_5g065860 44.000 75 42 0 49 123 43 117 1.29e-11 58.2
MsG0880043533.01.T01 MTR_7g112360 46.269 67 32 1 54 116 16 82 1.61e-11 57.4
MsG0880043533.01.T01 MTR_2g033460 40.000 80 46 1 39 116 409 488 1.67e-11 60.5
MsG0880043533.01.T01 MTR_7g112360 46.269 67 32 1 54 116 16 82 1.92e-11 58.2
MsG0880043533.01.T01 MTR_2g064910 44.444 72 38 1 48 117 286 357 2.13e-11 60.1
MsG0880043533.01.T01 MTR_2g014470 45.714 70 37 1 55 123 5 74 3.27e-11 59.3
MsG0880043533.01.T01 MTR_5g022210 45.455 66 34 1 55 118 73 138 9.29e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043533.01.T01 AT4G39150 76.623 77 18 0 49 125 1 77 3.26e-37 129
MsG0880043533.01.T01 AT4G39150 76.623 77 18 0 49 125 1 77 3.26e-37 129
MsG0880043533.01.T01 AT4G39150 76.623 77 18 0 49 125 1 77 3.26e-37 129
MsG0880043533.01.T01 AT2G21510 75.325 77 19 0 49 125 1 77 2.17e-35 124
MsG0880043533.01.T01 AT2G21510 75.325 77 19 0 49 125 1 77 3.12e-35 124
MsG0880043533.01.T01 AT2G21510 75.325 77 19 0 49 125 1 77 3.12e-35 124
MsG0880043533.01.T01 AT2G21510 75.325 77 19 0 49 125 1 77 3.36e-35 124
MsG0880043533.01.T01 AT2G21510 75.325 77 19 0 49 125 1 77 3.36e-35 124
MsG0880043533.01.T01 AT1G21080 71.053 76 22 0 49 124 1 76 4.56e-33 119
MsG0880043533.01.T01 AT1G21080 71.053 76 22 0 49 124 1 76 4.82e-33 119
MsG0880043533.01.T01 AT1G76700 69.737 76 23 0 49 124 1 76 2.03e-31 115
MsG0880043533.01.T01 AT1G77020 73.611 72 19 0 49 120 1 72 2.05e-31 114
MsG0880043533.01.T01 AT5G48030 49.296 71 36 0 55 125 95 165 1.30e-16 75.1
MsG0880043533.01.T01 AT1G71000 47.297 74 34 2 47 116 2 74 5.14e-16 70.1
MsG0880043533.01.T01 AT1G71000 47.297 74 34 2 47 116 2 74 2.38e-15 68.6
MsG0880043533.01.T01 AT1G59980 50.000 68 34 0 56 123 25 92 2.95e-14 68.2
MsG0880043533.01.T01 AT1G59980 50.000 68 34 0 56 123 25 92 4.31e-14 67.8
MsG0880043533.01.T01 AT3G12170 37.736 106 65 1 15 119 7 112 4.46e-14 67.0
MsG0880043533.01.T01 AT2G22360 50.725 69 33 1 55 123 87 154 9.36e-14 66.6
MsG0880043533.01.T01 AT1G28210 47.619 63 33 0 55 117 49 111 1.24e-13 66.2
MsG0880043533.01.T01 AT1G28210 47.619 63 33 0 55 117 49 111 1.47e-13 66.2
MsG0880043533.01.T01 AT1G28210 47.619 63 33 0 55 117 49 111 1.49e-13 66.2
MsG0880043533.01.T01 AT4G39960 47.222 72 37 1 52 123 83 153 2.14e-13 65.9
MsG0880043533.01.T01 AT4G39960 47.222 72 37 1 52 123 83 153 2.14e-13 65.9
MsG0880043533.01.T01 AT1G80030 50.725 69 33 1 55 123 76 143 6.32e-13 64.3
MsG0880043533.01.T01 AT1G80030 50.725 69 33 1 55 123 76 143 6.32e-13 64.3
MsG0880043533.01.T01 AT1G80030 50.725 69 33 1 55 123 76 143 6.32e-13 64.3
MsG0880043533.01.T01 AT5G06910 41.026 78 46 0 42 119 17 94 6.54e-13 63.9
MsG0880043533.01.T01 AT1G80030 50.725 69 33 1 55 123 76 143 6.60e-13 64.3
MsG0880043533.01.T01 AT1G16680 42.857 84 44 2 36 117 275 356 8.84e-13 63.9
MsG0880043533.01.T01 AT3G62600 47.222 72 38 0 54 125 26 97 9.03e-13 63.9
MsG0880043533.01.T01 AT5G25530 47.887 71 36 1 55 124 5 75 1.12e-12 63.5
MsG0880043533.01.T01 AT1G79030 35.714 126 63 4 9 117 235 359 2.57e-12 62.8
MsG0880043533.01.T01 AT3G12170 42.105 76 44 0 44 119 1 76 3.04e-12 62.0
MsG0880043533.01.T01 AT3G17830 44.000 75 41 1 49 123 58 131 3.43e-12 62.4
MsG0880043533.01.T01 AT1G10350 45.714 70 37 1 55 123 5 74 4.64e-12 61.6
MsG0880043533.01.T01 AT3G47940 46.479 71 36 1 55 123 5 75 7.23e-12 61.2
MsG0880043533.01.T01 AT2G20560 48.571 70 35 1 55 123 5 74 7.52e-12 61.2
MsG0880043533.01.T01 AT3G08910 47.887 71 36 1 55 124 5 75 8.97e-12 60.8
MsG0880043533.01.T01 AT4G28480 48.571 70 35 1 55 123 5 74 1.26e-11 60.5
MsG0880043533.01.T01 AT1G79030 34.921 126 64 3 9 117 100 224 1.37e-11 60.5
MsG0880043533.01.T01 AT4G28480 48.571 70 35 1 55 123 5 74 1.45e-11 60.1
MsG0880043533.01.T01 AT5G03160 45.070 71 38 1 48 117 364 434 1.46e-11 60.5
MsG0880043533.01.T01 AT1G68370 47.059 68 36 0 56 123 19 86 1.68e-11 60.5
MsG0880043533.01.T01 AT3G44110 52.055 73 31 2 53 125 13 81 2.18e-11 59.7
MsG0880043533.01.T01 AT5G01390 44.444 72 39 1 55 125 5 76 4.97e-11 58.2
MsG0880043533.01.T01 AT2G17880 37.838 74 44 1 47 118 61 134 5.27e-11 57.0
MsG0880043533.01.T01 AT5G01390 44.444 72 39 1 55 125 5 76 6.18e-11 58.2
MsG0880043533.01.T01 AT5G01390 44.444 72 39 1 55 125 5 76 6.65e-11 57.8
MsG0880043533.01.T01 AT3G44110 50.000 78 35 2 48 125 8 81 6.65e-11 58.5
MsG0880043533.01.T01 AT5G16650 47.692 65 34 0 55 119 12 76 7.30e-11 55.8
MsG0880043533.01.T01 AT1G56300 44.928 69 34 2 52 116 11 79 8.44e-11 55.5
MsG0880043533.01.T01 AT1G24120 44.118 68 38 0 56 123 22 89 9.69e-11 58.2
MsG0880043533.01.T01 AT5G01390 44.444 72 39 1 55 125 5 76 9.96e-11 58.2

Find 19 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTTAATTTCAACCATTT+TGG 0.135197 8:+26243420 None:intergenic
TCGTAGACATGTTCATGTTC+AGG 0.324562 8:+26243471 None:intergenic
CATGAATTATCTATGAAGTA+TGG 0.337418 8:-26243509 MsG0880043533.01.T01:CDS
TCATGATTGATTGGTCTCAT+TGG 0.361897 8:+26243527 None:intergenic
ATAGATAATTCATGATTGAT+TGG 0.363747 8:+26243518 None:intergenic
GTTGCGTTAGAGATCCAAAA+TGG 0.417404 8:-26243434 MsG0880043533.01.T01:intron
TCATATGCTTCACGCTTCTC+AGG 0.426988 8:+26240177 None:intergenic
TCTCATTGGAGTATAATTAT+CGG 0.434510 8:+26243541 None:intergenic
ACTGCTTACTATGATACATT+AGG 0.437505 8:-26242328 MsG0880043533.01.T01:CDS
GCTGCTTGGTGAGGCCTACC+AGG 0.462884 8:-26240211 MsG0880043533.01.T01:CDS
TCTGCAGCCTTGGGATCCCC+AGG 0.481072 8:+26240450 None:intergenic
CGTAGACATGTTCATGTTCA+GGG 0.485055 8:+26243472 None:intergenic
TTGTATCTATACCAGCTGCT+TGG 0.561249 8:-26240225 MsG0880043533.01.T01:intron
TCTCAGGATCGCTTAAAACC+TGG 0.564099 8:+26240193 None:intergenic
GGAGTATAATTATCGGTGGA+TGG 0.573162 8:+26243548 None:intergenic
TCTATACCAGCTGCTTGGTG+AGG 0.596878 8:-26240220 MsG0880043533.01.T01:intron
CATTGGAGTATAATTATCGG+TGG 0.624481 8:+26243544 None:intergenic
TAGTGTTGATGCTTCTGCTG+CGG 0.636211 8:-26242302 MsG0880043533.01.T01:CDS
AGGATCGCTTAAAACCTGGT+AGG 0.657593 8:+26240197 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTATTTTATTTTTTTA+GGG + Chr8:26241027-26241046 None:intergenic 0.0%
!!! TTATTTTATTTTATTTTTTT+AGG + Chr8:26241028-26241047 None:intergenic 0.0%
!! GAAATTCAAATTATAAATAT+TGG - Chr8:26240735-26240754 MsG0880043533.01.T01:intron 10.0%
!! TTAATAAAATCTAGTAATAT+TGG + Chr8:26243323-26243342 None:intergenic 10.0%
!!! CATCAATTTTTTTTTTTTTT+AGG - Chr8:26241838-26241857 MsG0880043533.01.T01:intron 10.0%
!!! GAATTTATATTAGATTTTAA+AGG + Chr8:26240712-26240731 None:intergenic 10.0%
!! ACTTGATAAATAATTCAAAT+AGG + Chr8:26242441-26242460 None:intergenic 15.0%
!! ATATTCACTCATTAAATAAA+TGG + Chr8:26240889-26240908 None:intergenic 15.0%
!! CAATTTATGACAAAATTAAA+GGG + Chr8:26241473-26241492 None:intergenic 15.0%
!! CTTGATAAATAATTCAAATA+GGG + Chr8:26242440-26242459 None:intergenic 15.0%
!! TATTAACCATAAATTTACAT+GGG - Chr8:26241641-26241660 MsG0880043533.01.T01:intron 15.0%
!! TATTTATGATTTACTATGAT+TGG + Chr8:26240981-26241000 None:intergenic 15.0%
!! TCAATTTATGACAAAATTAA+AGG + Chr8:26241474-26241493 None:intergenic 15.0%
!! TTATTAACCATAAATTTACA+TGG - Chr8:26241640-26241659 MsG0880043533.01.T01:intron 15.0%
!! TTGATAAATAATTCAAATAG+GGG + Chr8:26242439-26242458 None:intergenic 15.0%
!!! AATTGAAGATTTTCAATTTT+AGG + Chr8:26242842-26242861 None:intergenic 15.0%
!!! ATTTTTTTGCATAATTTTAG+AGG - Chr8:26241306-26241325 MsG0880043533.01.T01:intron 15.0%
!!! TAGTCTTTAAAAATCTTAAA+AGG - Chr8:26240758-26240777 MsG0880043533.01.T01:intron 15.0%
!!! TGAATATGTGATTAATTTTT+GGG - Chr8:26242651-26242670 MsG0880043533.01.T01:intron 15.0%
!!! TTTATATTTTATAAGCAATC+AGG - Chr8:26242297-26242316 MsG0880043533.01.T01:CDS 15.0%
!! AAAAAAAAATTGATGCTTCT+AGG + Chr8:26241833-26241852 None:intergenic 20.0%
!! ATAGATAATTCATGATTGAT+TGG + Chr8:26240182-26240201 None:intergenic 20.0%
!! CAAAAAAGCTTATTATGTTA+AGG - Chr8:26241422-26241441 MsG0880043533.01.T01:intron 20.0%
!! CACATATTCACATTATTAAA+GGG + Chr8:26242641-26242660 None:intergenic 20.0%
!! CGATATATATCATATATGAA+TGG + Chr8:26241269-26241288 None:intergenic 20.0%
!! GTTGAAATTAAGAAAGTAAA+CGG - Chr8:26240285-26240304 MsG0880043533.01.T01:intron 20.0%
!! TCACATATTCACATTATTAA+AGG + Chr8:26242642-26242661 None:intergenic 20.0%
!! TGATAAATAATTCAAATAGG+GGG + Chr8:26242438-26242457 None:intergenic 20.0%
!! TGATTTGATATCAGAAAAAA+TGG - Chr8:26241338-26241357 MsG0880043533.01.T01:intron 20.0%
!! TTAATGCCTATATTAAAGAT+TGG + Chr8:26241909-26241928 None:intergenic 20.0%
!!! AAACATGTTTTTGAAAGTTT+TGG - Chr8:26240493-26240512 MsG0880043533.01.T01:intron 20.0%
!!! AAGTTATAAAGTGTTAGATT+TGG - Chr8:26241526-26241545 MsG0880043533.01.T01:intron 20.0%
!!! GTGAATATGTGATTAATTTT+TGG - Chr8:26242650-26242669 MsG0880043533.01.T01:intron 20.0%
!!! TACAATTTTAACAACTGAAT+TGG + Chr8:26242771-26242790 None:intergenic 20.0%
!!! TTAATATGAAGTGTTAGATT+TGG - Chr8:26241574-26241593 MsG0880043533.01.T01:intron 20.0%
!!! TTACATTAGTTTTTTTGCAA+TGG - Chr8:26242860-26242879 MsG0880043533.01.T01:intron 20.0%
!!! TTTCTTAATTTCAACCATTT+TGG + Chr8:26240280-26240299 None:intergenic 20.0%
!!! TTTTATTATACCCTCATTTT+AGG + Chr8:26240850-26240869 None:intergenic 20.0%
!!! TTTTTTCATTTTTACCTTCT+GGG - Chr8:26241193-26241212 MsG0880043533.01.T01:intron 20.0%
! AAAAGAACAAAAGAAGTCTT+TGG - Chr8:26240930-26240949 MsG0880043533.01.T01:intron 25.0%
! AAAGAACAAAAGAAGTCTTT+GGG - Chr8:26240931-26240950 MsG0880043533.01.T01:intron 25.0%
! AAATGTTATTGATGAGTGTT+AGG + Chr8:26242257-26242276 None:intergenic 25.0%
! AATTAAGAAAGTAAACGGAT+TGG - Chr8:26240290-26240309 MsG0880043533.01.T01:intron 25.0%
! ACTACACAATTCATATAACT+CGG - Chr8:26242384-26242403 MsG0880043533.01.T01:intron 25.0%
! ACTGTAATCTTCTAAATAGT+TGG + Chr8:26243004-26243023 None:intergenic 25.0%
! ATTGATCCCATGTAAATTTA+TGG + Chr8:26241650-26241669 None:intergenic 25.0%
! ATTGTATGTGTCATACAATT+TGG - Chr8:26242785-26242804 MsG0880043533.01.T01:intron 25.0%
! CAGAAACAGTATTAAATGTA+GGG - Chr8:26243378-26243397 MsG0880043533.01.T01:intron 25.0%
! CATGAATTATCTATGAAGTA+TGG - Chr8:26240188-26240207 MsG0880043533.01.T01:CDS 25.0%
! GGTTATCCAATCTTTAATAT+AGG - Chr8:26241900-26241919 MsG0880043533.01.T01:intron 25.0%
! GTTAATAATGTTCAAATTCG+TGG - Chr8:26241699-26241718 MsG0880043533.01.T01:intron 25.0%
! TATACTTTCCTATACTATCA+TGG + Chr8:26240569-26240588 None:intergenic 25.0%
! TCAGAAACAGTATTAAATGT+AGG - Chr8:26243377-26243396 MsG0880043533.01.T01:intron 25.0%
! TCTCATTGGAGTATAATTAT+CGG + Chr8:26240159-26240178 None:intergenic 25.0%
! TTCAATAAGCCCTTAAAAAA+TGG - Chr8:26242467-26242486 MsG0880043533.01.T01:intron 25.0%
! TTGATGTTCAAAAAACATTG+AGG - Chr8:26241997-26242016 MsG0880043533.01.T01:intron 25.0%
! TTGTCATAAATTGAGATTTG+AGG - Chr8:26241480-26241499 MsG0880043533.01.T01:intron 25.0%
!! AACTTTTAAATGGGTATACT+TGG - Chr8:26241551-26241570 MsG0880043533.01.T01:intron 25.0%
!! AGATTTGGAGAACTTTTAAA+TGG - Chr8:26241541-26241560 MsG0880043533.01.T01:intron 25.0%
!! CAGGATACTTTTGTAAAATA+TGG - Chr8:26242316-26242335 MsG0880043533.01.T01:CDS 25.0%
!! GATTTGGAGAACTTTTAAAT+GGG - Chr8:26241542-26241561 MsG0880043533.01.T01:intron 25.0%
!! TAGAATTTCGTTAGTTTCAA+GGG - Chr8:26242955-26242974 MsG0880043533.01.T01:intron 25.0%
!! TCTTCTACATACTTTTAGAT+TGG - Chr8:26242727-26242746 MsG0880043533.01.T01:intron 25.0%
!! TTATTCGGTGAAATTAATGT+AGG + Chr8:26242203-26242222 None:intergenic 25.0%
!!! AACATCCACTTTTTCATATT+GGG - Chr8:26242122-26242141 MsG0880043533.01.T01:intron 25.0%
!!! ATATGTGATTAATTTTTGGG+TGG - Chr8:26242654-26242673 MsG0880043533.01.T01:intron 25.0%
!!! ATGTTTTTTGAACATCAAGT+TGG + Chr8:26241995-26242014 None:intergenic 25.0%
!!! CTTTTTTCATTTTTACCTTC+TGG - Chr8:26241192-26241211 MsG0880043533.01.T01:intron 25.0%
!!! GAGAATGTTGTTATTTTCAA+GGG + Chr8:26242811-26242830 None:intergenic 25.0%
!!! TAACATCCACTTTTTCATAT+TGG - Chr8:26242121-26242140 MsG0880043533.01.T01:intron 25.0%
!!! TGAGAATGTTGTTATTTTCA+AGG + Chr8:26242812-26242831 None:intergenic 25.0%
!!! TGTTTTTTGAACATCAAGTT+GGG + Chr8:26241994-26242013 None:intergenic 25.0%
!!! TTCAAGAGTCCATTTTTTAA+GGG + Chr8:26242479-26242498 None:intergenic 25.0%
AAAATGGAAGAAGGTTAGAA+GGG + Chr8:26243196-26243215 None:intergenic 30.0%
AAACTAACGAAATTCTACAG+TGG + Chr8:26242952-26242971 None:intergenic 30.0%
AACAATTCTTGCCTGTAAAA+TGG + Chr8:26243212-26243231 None:intergenic 30.0%
ACTGCTTACTATGATACATT+AGG - Chr8:26241369-26241388 MsG0880043533.01.T01:intron 30.0%
AGCATATGACAAAAATGGAA+AGG - Chr8:26243534-26243553 MsG0880043533.01.T01:CDS 30.0%
AGCTAACATAGTTCAATGAA+TGG + Chr8:26241932-26241951 None:intergenic 30.0%
AGTATTATGAAGCCAAAACA+TGG + Chr8:26243298-26243317 None:intergenic 30.0%
CATACATTCACTCTCTTATT+CGG + Chr8:26242218-26242237 None:intergenic 30.0%
GAAAGTGAAAAAGATGATGA+AGG + Chr8:26241247-26241266 None:intergenic 30.0%
GATATCAGAAAAAATGGTGA+AGG - Chr8:26241344-26241363 MsG0880043533.01.T01:intron 30.0%
GCAGACTAGATCAATAATTA+TGG + Chr8:26242587-26242606 None:intergenic 30.0%
GGTTAATAAAGTTCAGTTGA+TGG + Chr8:26241629-26241648 None:intergenic 30.0%
GGTTAATGAGTTATGAAGTA+GGG - Chr8:26241741-26241760 MsG0880043533.01.T01:intron 30.0%
GTAAGTTAGGTTAACGAAAT+GGG - Chr8:26242699-26242718 MsG0880043533.01.T01:intron 30.0%
TAAAATGGAAGAAGGTTAGA+AGG + Chr8:26243197-26243216 None:intergenic 30.0%
TATCTCCCCAATAAAACTAA+TGG + Chr8:26240641-26240660 None:intergenic 30.0%
TCCTCTCAATTTCTTAAAGT+TGG - Chr8:26241166-26241185 MsG0880043533.01.T01:intron 30.0%
TGAGAATTGTTCTTAAAGCA+AGG - Chr8:26240445-26240464 MsG0880043533.01.T01:CDS 30.0%
TGGTTAATGAGTTATGAAGT+AGG - Chr8:26241740-26241759 MsG0880043533.01.T01:intron 30.0%
TTGTGTAGTAATACCAATCT+CGG + Chr8:26242373-26242392 None:intergenic 30.0%
TTTCACCCAATATGAAAAAG+TGG + Chr8:26242130-26242149 None:intergenic 30.0%
! AATCATTTTCAGCACTTCTA+TGG + Chr8:26240381-26240400 None:intergenic 30.0%
! AGTATAGGAAAGTATAGAGA+TGG - Chr8:26240573-26240592 MsG0880043533.01.T01:intron 30.0%
! GTAGAATTTCGTTAGTTTCA+AGG - Chr8:26242954-26242973 MsG0880043533.01.T01:intron 30.0%
! TATTATACCCTCATTTTAGG+AGG + Chr8:26240847-26240866 None:intergenic 30.0%
! TCCAACTTTAAGAAATTGAG+AGG + Chr8:26241170-26241189 None:intergenic 30.0%
!! CAGTTGATGGTTAATAAGTT+GGG + Chr8:26241616-26241635 None:intergenic 30.0%
!! TCAGTTGATGGTTAATAAGT+TGG + Chr8:26241617-26241636 None:intergenic 30.0%
!! TTAACATCCACTTTTCTACT+GGG - Chr8:26242053-26242072 MsG0880043533.01.T01:intron 30.0%
!! TTCAAAAAAGCGTTCAATCA+TGG - Chr8:26241677-26241696 MsG0880043533.01.T01:intron 30.0%
!! TTTAACATCCACTTTTCTAC+TGG - Chr8:26242052-26242071 MsG0880043533.01.T01:intron 30.0%
!!! AGAGAGCCATTAGTTTTATT+GGG - Chr8:26240632-26240651 MsG0880043533.01.T01:intron 30.0%
!!! CTTCAAGAGTCCATTTTTTA+AGG + Chr8:26242480-26242499 None:intergenic 30.0%
!!! TTTTGAAAGTTTTGGTTCAC+TGG - Chr8:26240501-26240520 MsG0880043533.01.T01:intron 30.0%
AAAACGGATCCCACATAAAA+TGG + Chr8:26242168-26242187 None:intergenic 35.0%
AAATGCACCTCCTAAAATGA+GGG - Chr8:26240837-26240856 MsG0880043533.01.T01:intron 35.0%
AATTTCACCCAGTAGAAAAG+TGG + Chr8:26242063-26242082 None:intergenic 35.0%
AGAACCTTGTAAAGTGGTTA+AGG - Chr8:26240315-26240334 MsG0880043533.01.T01:intron 35.0%
AGTTCATCCAAGATAAGTTC+AGG + Chr8:26242897-26242916 None:intergenic 35.0%
ATCACCTTAACCACTTTACA+AGG + Chr8:26240322-26240341 None:intergenic 35.0%
ATTGGATGTGAATAGACGAA+TGG - Chr8:26242745-26242764 MsG0880043533.01.T01:intron 35.0%
ATTTGGGTGAATCGTAAGTT+AGG - Chr8:26242686-26242705 MsG0880043533.01.T01:intron 35.0%
ATTTGTACTCATTCCGAGAT+TGG - Chr8:26242357-26242376 MsG0880043533.01.T01:intron 35.0%
CATTGGAGTATAATTATCGG+TGG + Chr8:26240156-26240175 None:intergenic 35.0%
CGTAAGTTAGGTTAACGAAA+TGG - Chr8:26242698-26242717 MsG0880043533.01.T01:intron 35.0%
CGTGAAGCATATGACAAAAA+TGG - Chr8:26243529-26243548 MsG0880043533.01.T01:CDS 35.0%
CGTGGTTAAGTAAATTCAGT+TGG - Chr8:26241717-26241736 MsG0880043533.01.T01:intron 35.0%
GACTCTATCCATGATAGTAT+AGG - Chr8:26240558-26240577 MsG0880043533.01.T01:intron 35.0%
GATTTGAGGATGTGAGTATT+TGG - Chr8:26241494-26241513 MsG0880043533.01.T01:intron 35.0%
GGTTAAGTAAATTCAGTTGG+TGG - Chr8:26241720-26241739 MsG0880043533.01.T01:intron 35.0%
GTTCATCCAAGATAAGTTCA+GGG + Chr8:26242896-26242915 None:intergenic 35.0%
TATCAGATATCAATGCTCTG+CGG - Chr8:26241790-26241809 MsG0880043533.01.T01:intron 35.0%
TGAACAAACTTTCAGTCACA+GGG + Chr8:26242523-26242542 None:intergenic 35.0%
TGGGCAATTGAATCCATAAT+GGG + Chr8:26240355-26240374 None:intergenic 35.0%
TTCACCCTGATAAAAATCCT+GGG - Chr8:26243230-26243249 MsG0880043533.01.T01:intron 35.0%
TTCATATAACTCGGCTTCTT+TGG - Chr8:26242393-26242412 MsG0880043533.01.T01:intron 35.0%
TTGGGCAATTGAATCCATAA+TGG + Chr8:26240356-26240375 None:intergenic 35.0%
TTTAGTCCCTGAACTTATCT+TGG - Chr8:26242887-26242906 MsG0880043533.01.T01:intron 35.0%
! ACGACAACGTTTTTGTCATA+CGG - Chr8:26241120-26241139 MsG0880043533.01.T01:intron 35.0%
! CTAACCTTCTTCCATTTTAC+AGG - Chr8:26243198-26243217 MsG0880043533.01.T01:intron 35.0%
! TAGGTCCCAAACTTTGAAAA+CGG + Chr8:26242184-26242203 None:intergenic 35.0%
! TGAAAATTTTCTGCAGCCTT+GGG + Chr8:26243259-26243278 None:intergenic 35.0%
! TTTAGGAGGTGCATTTGATT+AGG + Chr8:26240833-26240852 None:intergenic 35.0%
!! AGTAGGGAGACTCTAAAATT+CGG - Chr8:26241757-26241776 MsG0880043533.01.T01:intron 35.0%
!! GATTTCTTTGAAGCCCATTA+TGG - Chr8:26240339-26240358 MsG0880043533.01.T01:intron 35.0%
!! TCATGATTGATTGGTCTCAT+TGG + Chr8:26240173-26240192 None:intergenic 35.0%
!!! GAGAGAGCCATTAGTTTTAT+TGG - Chr8:26240631-26240650 MsG0880043533.01.T01:intron 35.0%
!!! GAGAGCCATTAGTTTTATTG+GGG - Chr8:26240633-26240652 MsG0880043533.01.T01:intron 35.0%
ACAGGGATGACAAGATCATT+AGG + Chr8:26242506-26242525 None:intergenic 40.0%
ACCTGTTGCAGATCTATTAC+AGG + Chr8:26243074-26243093 None:intergenic 40.0%
ATACGGATCCACAAGAAATC+TGG - Chr8:26241137-26241156 MsG0880043533.01.T01:intron 40.0%
CAAATGCACCTCCTAAAATG+AGG - Chr8:26240836-26240855 MsG0880043533.01.T01:intron 40.0%
CAATCAGTGTTGCAATGTGT+GGG - Chr8:26240534-26240553 MsG0880043533.01.T01:intron 40.0%
CGTAGACATGTTCATGTTCA+GGG + Chr8:26240228-26240247 None:intergenic 40.0%
CTTGCCTGTAAAATGGAAGA+AGG + Chr8:26243205-26243224 None:intergenic 40.0%
GAAATTCTACAGTGGTCACT+TGG + Chr8:26242944-26242963 None:intergenic 40.0%
GAAGATTGCCAGATTTCTTG+TGG + Chr8:26241148-26241167 None:intergenic 40.0%
GAATAGATAGAGAACCCCAA+AGG + Chr8:26243413-26243432 None:intergenic 40.0%
GGAGTATAATTATCGGTGGA+TGG + Chr8:26240152-26240171 None:intergenic 40.0%
GTAGGGATATCCATACCTTT+GGG - Chr8:26243395-26243414 MsG0880043533.01.T01:intron 40.0%
GTGAACAAACTTTCAGTCAC+AGG + Chr8:26242524-26242543 None:intergenic 40.0%
GTTCACCCTGATAAAAATCC+TGG - Chr8:26243229-26243248 MsG0880043533.01.T01:intron 40.0%
GTTGCGTTAGAGATCCAAAA+TGG - Chr8:26240263-26240282 MsG0880043533.01.T01:intron 40.0%
TAGGGATATCCATACCTTTG+GGG - Chr8:26243396-26243415 MsG0880043533.01.T01:intron 40.0%
TAGGTAGCTGTCTGAACATA+AGG + Chr8:26241090-26241109 None:intergenic 40.0%
TCACCCTGATAAAAATCCTG+GGG - Chr8:26243231-26243250 MsG0880043533.01.T01:intron 40.0%
TCGTAGACATGTTCATGTTC+AGG + Chr8:26240229-26240248 None:intergenic 40.0%
TGACAAAAATGGAAAGGCAG+CGG - Chr8:26243540-26243559 MsG0880043533.01.T01:CDS 40.0%
TGTAGGGATATCCATACCTT+TGG - Chr8:26243394-26243413 MsG0880043533.01.T01:intron 40.0%
TTCAGCACTTCTATGGCATT+GGG + Chr8:26240374-26240393 None:intergenic 40.0%
TTGGCTAGAACCTTGTAAAG+TGG - Chr8:26240309-26240328 MsG0880043533.01.T01:intron 40.0%
TTGTATCTATACCAGCTGCT+TGG - Chr8:26243472-26243491 MsG0880043533.01.T01:CDS 40.0%
TTTCAGCACTTCTATGGCAT+TGG + Chr8:26240375-26240394 None:intergenic 40.0%
! CAAGGCTGCAGAAAATTTTC+AGG - Chr8:26243258-26243277 MsG0880043533.01.T01:intron 40.0%
! CTGAAAATTTTCTGCAGCCT+TGG + Chr8:26243260-26243279 None:intergenic 40.0%
! GATCCCCAGGATTTTTATCA+GGG + Chr8:26243237-26243256 None:intergenic 40.0%
! GATGAAGGAGTATACTAACC+AGG + Chr8:26241232-26241251 None:intergenic 40.0%
! GGGATCCGTTTTCAAAGTTT+GGG - Chr8:26242176-26242195 MsG0880043533.01.T01:intron 40.0%
! TGCACTAAGAGTCCATGTTT+TGG - Chr8:26243283-26243302 MsG0880043533.01.T01:intron 40.0%
! TGGGATCCGTTTTCAAAGTT+TGG - Chr8:26242175-26242194 MsG0880043533.01.T01:intron 40.0%
!! CGTTGTCGTTTGAAAGTACT+AGG + Chr8:26241109-26241128 None:intergenic 40.0%
!! TGAGTCTCGCCATTTTATGT+GGG - Chr8:26242156-26242175 MsG0880043533.01.T01:intron 40.0%
!!! TAATTTTTGGGTGGTGAGCT+GGG - Chr8:26242663-26242682 MsG0880043533.01.T01:intron 40.0%
!!! TTAATTTTTGGGTGGTGAGC+TGG - Chr8:26242662-26242681 MsG0880043533.01.T01:intron 40.0%
AGGATCGCTTAAAACCTGGT+AGG + Chr8:26243503-26243522 None:intergenic 45.0%
ATGGAAGAAGGTTAGAAGGG+AGG + Chr8:26243193-26243212 None:intergenic 45.0%
CAAGGAATGCTGCGAAGAAT+TGG - Chr8:26240463-26240482 MsG0880043533.01.T01:CDS 45.0%
CAGTGTCCCTAGAATTCATG+TGG + Chr8:26242099-26242118 None:intergenic 45.0%
CTACTGGGTGAAATTCACGT+GGG - Chr8:26242068-26242087 MsG0880043533.01.T01:intron 45.0%
GATAGAGAACCCCAAAGGTA+TGG + Chr8:26243408-26243427 None:intergenic 45.0%
GCAATCAGTGTTGCAATGTG+TGG - Chr8:26240533-26240552 MsG0880043533.01.T01:intron 45.0%
GCCTGTAATAGATCTGCAAC+AGG - Chr8:26243070-26243089 MsG0880043533.01.T01:intron 45.0%
TAAAAATCCTGGGGATCCCA+AGG - Chr8:26243240-26243259 MsG0880043533.01.T01:intron 45.0%
TCATATGCTTCACGCTTCTC+AGG + Chr8:26243523-26243542 None:intergenic 45.0%
TCTACTGGGTGAAATTCACG+TGG - Chr8:26242067-26242086 MsG0880043533.01.T01:intron 45.0%
TCTCAGGATCGCTTAAAACC+TGG + Chr8:26243507-26243526 None:intergenic 45.0%
TGGAAGAAGGTTAGAAGGGA+GGG + Chr8:26243192-26243211 None:intergenic 45.0%
TGTCCCTAGAATTCATGTGG+CGG + Chr8:26242096-26242115 None:intergenic 45.0%
! GATTTTCGAAGCAACCCAGA+AGG + Chr8:26241210-26241229 None:intergenic 45.0%
! GGATCCCCAGGATTTTTATC+AGG + Chr8:26243238-26243257 None:intergenic 45.0%
!! GTGAGTCTCGCCATTTTATG+TGG - Chr8:26242155-26242174 MsG0880043533.01.T01:intron 45.0%
!! TAGTGTTGATGCTTCTGCTG+CGG - Chr8:26241395-26241414 MsG0880043533.01.T01:intron 45.0%
!!! ATCAATTTTTTTTTTTTTTA+GGG - Chr8:26241839-26241858 MsG0880043533.01.T01:intron 5.0%
!!! ATTATATTAACTTTTTATAA+TGG - Chr8:26241878-26241897 MsG0880043533.01.T01:intron 5.0%
!!! ATTTTATTTTATTTTTTTAG+GGG + Chr8:26241026-26241045 None:intergenic 5.0%
!!! TTATATTAACTTTTTATAAT+GGG - Chr8:26241879-26241898 MsG0880043533.01.T01:intron 5.0%
ACCTCCAGAGAACACCTAAC+TGG - Chr8:26242542-26242561 MsG0880043533.01.T01:intron 50.0%
CTGGGTTGCTTCGAAAATCC+TGG - Chr8:26241211-26241230 MsG0880043533.01.T01:intron 50.0%
GTCCCGCCACATGAATTCTA+GGG - Chr8:26242090-26242109 MsG0880043533.01.T01:intron 50.0%
GTCCCTAGAATTCATGTGGC+GGG + Chr8:26242095-26242114 None:intergenic 50.0%
! TCTATACCAGCTGCTTGGTG+AGG - Chr8:26243477-26243496 MsG0880043533.01.T01:CDS 50.0%
GCCAGTTAGGTGTTCTCTGG+AGG + Chr8:26242546-26242565 None:intergenic 55.0%
GGTCCCGCCACATGAATTCT+AGG - Chr8:26242089-26242108 MsG0880043533.01.T01:intron 55.0%
GTCGCCAGTTAGGTGTTCTC+TGG + Chr8:26242549-26242568 None:intergenic 55.0%
TGGGTGGTGAGCTGGGATTT+GGG - Chr8:26242670-26242689 MsG0880043533.01.T01:intron 55.0%
TTGGGTGGTGAGCTGGGATT+TGG - Chr8:26242669-26242688 MsG0880043533.01.T01:intron 55.0%
CCTAACTGGCGACACAGTGC+AGG - Chr8:26242556-26242575 MsG0880043533.01.T01:intron 60.0%
CCTGCACTGTGTCGCCAGTT+AGG + Chr8:26242559-26242578 None:intergenic 60.0%
CTGGCGACACAGTGCAGGAT+TGG - Chr8:26242561-26242580 MsG0880043533.01.T01:intron 60.0%
GGTAGGCCTCACCAAGCAGC+TGG + Chr8:26243486-26243505 None:intergenic 65.0%
TCTGCAGCCTTGGGATCCCC+AGG + Chr8:26243250-26243269 None:intergenic 65.0%
! GCTGCTTGGTGAGGCCTACC+AGG - Chr8:26243486-26243505 MsG0880043533.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 26240146 26243573 26240146 ID=MsG0880043533.01;Name=MsG0880043533.01
Chr8 mRNA 26240146 26243573 26240146 ID=MsG0880043533.01.T01;Parent=MsG0880043533.01;Name=MsG0880043533.01.T01;_AED=0.50;_eAED=0.69;_QI=0|0.66|0.25|1|1|1|4|0|125
Chr8 exon 26243435 26243573 26243435 ID=MsG0880043533.01.T01:exon:1432;Parent=MsG0880043533.01.T01
Chr8 exon 26242276 26242367 26242276 ID=MsG0880043533.01.T01:exon:1431;Parent=MsG0880043533.01.T01
Chr8 exon 26240440 26240499 26240440 ID=MsG0880043533.01.T01:exon:1430;Parent=MsG0880043533.01.T01
Chr8 exon 26240146 26240232 26240146 ID=MsG0880043533.01.T01:exon:1429;Parent=MsG0880043533.01.T01
Chr8 CDS 26243435 26243573 26243435 ID=MsG0880043533.01.T01:cds;Parent=MsG0880043533.01.T01
Chr8 CDS 26242276 26242367 26242276 ID=MsG0880043533.01.T01:cds;Parent=MsG0880043533.01.T01
Chr8 CDS 26240440 26240499 26240440 ID=MsG0880043533.01.T01:cds;Parent=MsG0880043533.01.T01
Chr8 CDS 26240146 26240232 26240146 ID=MsG0880043533.01.T01:cds;Parent=MsG0880043533.01.T01
Gene Sequence

>MsG0880043533.01.T01

ATGCCATCCACCGATAATTATACTCCAATGAGACCAATCAATCATGAATTATCTATGAAGTATGGACACAAAAACATGACCCTGAACATGAACATGTCTACGATGATAAGTGTTGACGTTGCGTTAGAGATCCAAAATGAAAAAATGGTGAAGGAAACTGCTTACTATGATACATTAGGTGTTAGTGTTGATGCTTCTGCTGCGGATATCAAAAAAGCTTATTATGTTAAGGCAAGAATTGTTCACCCTGATAAAAATCCTGGGGATCCCAAGGCTGCAGAAAATTTTCAGCTGCTTGGTGAGGCCTACCAGGTTTTAAGCGATCCTGAGAAGCGTGAAGCATATGACAAAAATGGAAAGGCAGCGGTGTCACAGTAA

Protein sequence

>MsG0880043533.01.T01

MPSTDNYTPMRPINHELSMKYGHKNMTLNMNMSTMISVDVALEIQNEKMVKETAYYDTLGVSVDASAADIKKAYYVKARIVHPDKNPGDPKAAENFQLLGEAYQVLSDPEKREAYDKNGKAAVSQ*