Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043979.01.T01 | XP_003628200.1 | 75 | 156 | 21 | 2 | 1 | 139 | 1 | 155 | 1.05E-75 | 232 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043979.01.T01 | Q9SSK5 | 30.201 | 149 | 86 | 3 | 3 | 133 | 7 | 155 | 1.18E-15 | 72.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043979.01.T01 | G7L7T5 | 75.000 | 156 | 21 | 2 | 1 | 139 | 1 | 155 | 5.01e-76 | 232 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0880043979.01 | MsG0880044782.01 | 0.807320 | 5.353060e-50 | 2.972563e-47 |
| MsG0880043979.01 | MsG0880046012.01 | 0.814096 | 1.833318e-51 | 1.218765e-48 |
| MsG0180005153.01 | MsG0880043979.01 | 0.803275 | 3.768657e-49 | 1.885877e-46 |
| MsG0280010778.01 | MsG0880043979.01 | 0.804975 | 1.668881e-49 | 8.725077e-47 |
| MsG0280011014.01 | MsG0880043979.01 | 0.822058 | 2.902476e-53 | 2.403003e-50 |
| MsG0680031431.01 | MsG0880043979.01 | 0.801279 | 9.705719e-49 | 4.616602e-46 |
| MsG0480018909.01 | MsG0880043979.01 | 0.800791 | 1.221008e-48 | 5.736240e-46 |
| MsG0480019710.01 | MsG0880043979.01 | 0.824059 | 9.910281e-54 | 8.683362e-51 |
| MsG0480020739.01 | MsG0880043979.01 | 0.810451 | 1.145456e-50 | 6.906834e-48 |
| MsG0480023636.01 | MsG0880043979.01 | 0.800815 | 1.207583e-48 | 5.676654e-46 |
| MsG0280007547.01 | MsG0880043979.01 | 0.811546 | 6.632370e-51 | 4.117247e-48 |
| MsG0280008391.01 | MsG0880043979.01 | 0.817863 | 2.644733e-52 | 1.948618e-49 |
| MsG0280008392.01 | MsG0880043979.01 | 0.807814 | 4.205053e-50 | 2.365182e-47 |
| MsG0280008395.01 | MsG0880043979.01 | 0.809623 | 1.727018e-50 | 1.019044e-47 |
| MsG0280010489.01 | MsG0880043979.01 | 0.817779 | 2.762207e-52 | 2.030541e-49 |
| MsG0680035658.01 | MsG0880043979.01 | 0.843854 | 1.084679e-58 | 1.719529e-55 |
| MsG0780038401.01 | MsG0880043979.01 | 0.826241 | 3.022212e-54 | 2.818474e-51 |
| MsG0780039443.01 | MsG0880043979.01 | 0.803268 | 3.781244e-49 | 1.891835e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043979.01.T01 | MTR_8g045490 | 75.000 | 156 | 21 | 2 | 1 | 139 | 1 | 155 | 1.27e-79 | 232 |
| MsG0880043979.01.T01 | MTR_8g045400 | 70.513 | 156 | 28 | 2 | 1 | 139 | 1 | 155 | 6.93e-74 | 218 |
| MsG0880043979.01.T01 | MTR_8g045520 | 67.308 | 156 | 34 | 1 | 1 | 139 | 1 | 156 | 2.91e-72 | 213 |
| MsG0880043979.01.T01 | MTR_8g045570 | 63.816 | 152 | 38 | 1 | 1 | 135 | 1 | 152 | 2.68e-67 | 201 |
| MsG0880043979.01.T01 | MTR_8g045300 | 61.538 | 156 | 43 | 1 | 1 | 139 | 1 | 156 | 2.11e-65 | 196 |
| MsG0880043979.01.T01 | MTR_8g045695 | 60.256 | 156 | 44 | 2 | 1 | 139 | 1 | 155 | 6.10e-64 | 192 |
| MsG0880043979.01.T01 | MTR_8g045555 | 62.500 | 152 | 40 | 1 | 1 | 135 | 1 | 152 | 4.90e-63 | 190 |
| MsG0880043979.01.T01 | MTR_8g045735 | 59.355 | 155 | 45 | 2 | 1 | 138 | 1 | 154 | 3.66e-62 | 188 |
| MsG0880043979.01.T01 | MTR_8g045665 | 58.333 | 156 | 47 | 2 | 1 | 139 | 1 | 155 | 4.15e-60 | 182 |
| MsG0880043979.01.T01 | MTR_8g045640 | 58.974 | 156 | 46 | 2 | 1 | 139 | 1 | 155 | 6.79e-60 | 182 |
| MsG0880043979.01.T01 | MTR_8g045560 | 57.692 | 156 | 48 | 2 | 1 | 139 | 1 | 155 | 2.69e-58 | 178 |
| MsG0880043979.01.T01 | MTR_1g030810 | 38.158 | 152 | 76 | 2 | 1 | 134 | 1 | 152 | 3.45e-29 | 104 |
| MsG0880043979.01.T01 | MTR_1g030820 | 36.184 | 152 | 79 | 2 | 1 | 134 | 1 | 152 | 4.02e-29 | 103 |
| MsG0880043979.01.T01 | MTR_1g030840 | 34.839 | 155 | 78 | 5 | 1 | 132 | 1 | 155 | 5.75e-20 | 80.9 |
| MsG0880043979.01.T01 | MTR_8g012550 | 29.167 | 144 | 84 | 3 | 6 | 132 | 8 | 150 | 3.90e-17 | 73.6 |
| MsG0880043979.01.T01 | MTR_1g031640 | 31.973 | 147 | 76 | 5 | 7 | 135 | 7 | 147 | 6.63e-16 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043979.01.T01 | AT1G70870 | 33.813 | 139 | 86 | 3 | 1 | 134 | 1 | 138 | 3.43e-17 | 73.2 |
| MsG0880043979.01.T01 | AT5G28010 | 28.859 | 149 | 88 | 3 | 3 | 133 | 15 | 163 | 8.27e-17 | 72.8 |
| MsG0880043979.01.T01 | AT5G28010 | 28.859 | 149 | 88 | 3 | 3 | 133 | 15 | 163 | 8.27e-17 | 72.8 |
| MsG0880043979.01.T01 | AT1G70890 | 30.201 | 149 | 86 | 3 | 3 | 133 | 7 | 155 | 1.20e-16 | 72.4 |
| MsG0880043979.01.T01 | AT1G23120 | 36.364 | 88 | 55 | 1 | 46 | 133 | 59 | 145 | 2.75e-14 | 65.9 |
| MsG0880043979.01.T01 | AT1G70840 | 27.517 | 149 | 90 | 3 | 3 | 133 | 20 | 168 | 3.29e-14 | 66.2 |
| MsG0880043979.01.T01 | AT1G70830 | 28.188 | 149 | 89 | 3 | 3 | 133 | 22 | 170 | 4.79e-14 | 65.9 |
| MsG0880043979.01.T01 | AT1G23120 | 36.364 | 88 | 55 | 1 | 46 | 133 | 109 | 195 | 4.94e-14 | 66.2 |
| MsG0880043979.01.T01 | AT1G70830 | 28.188 | 149 | 89 | 3 | 3 | 133 | 22 | 170 | 7.46e-14 | 65.9 |
| MsG0880043979.01.T01 | AT1G70830 | 28.188 | 149 | 89 | 3 | 3 | 133 | 22 | 170 | 2.01e-13 | 65.5 |
| MsG0880043979.01.T01 | AT1G70830 | 28.188 | 149 | 89 | 3 | 3 | 133 | 22 | 170 | 2.75e-13 | 65.9 |
| MsG0880043979.01.T01 | AT1G70830 | 26.846 | 149 | 91 | 3 | 3 | 133 | 184 | 332 | 2.02e-11 | 60.5 |
| MsG0880043979.01.T01 | AT1G70880 | 26.846 | 149 | 91 | 3 | 3 | 133 | 8 | 156 | 5.10e-13 | 62.8 |
| MsG0880043979.01.T01 | AT5G28000 | 26.846 | 149 | 91 | 3 | 3 | 133 | 13 | 161 | 8.62e-13 | 62.4 |
| MsG0880043979.01.T01 | AT1G24020 | 30.921 | 152 | 86 | 4 | 1 | 134 | 1 | 151 | 1.22e-12 | 61.6 |
| MsG0880043979.01.T01 | AT1G24020 | 30.921 | 152 | 86 | 4 | 1 | 134 | 1 | 151 | 1.22e-12 | 61.6 |
| MsG0880043979.01.T01 | AT1G70850 | 26.846 | 149 | 91 | 3 | 3 | 133 | 9 | 157 | 2.80e-12 | 62.0 |
| MsG0880043979.01.T01 | AT1G14940 | 29.286 | 140 | 97 | 2 | 1 | 139 | 1 | 139 | 3.10e-12 | 60.5 |
| MsG0880043979.01.T01 | AT1G23130 | 25.000 | 148 | 94 | 2 | 3 | 133 | 10 | 157 | 3.35e-12 | 60.8 |
| MsG0880043979.01.T01 | AT1G70850 | 26.846 | 149 | 91 | 3 | 3 | 133 | 9 | 157 | 4.60e-12 | 62.4 |
| MsG0880043979.01.T01 | AT1G70850 | 26.846 | 149 | 91 | 3 | 3 | 133 | 9 | 157 | 4.60e-12 | 62.4 |
| MsG0880043979.01.T01 | AT1G70830 | 26.846 | 149 | 91 | 3 | 3 | 133 | 137 | 285 | 1.21e-11 | 60.8 |
| MsG0880043979.01.T01 | AT4G23670 | 28.289 | 152 | 91 | 3 | 1 | 135 | 1 | 151 | 4.52e-11 | 57.4 |
Find 25 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGCATTATAGGGTCTTTA+AGG | 0.251134 | 8:-33725716 | MsG0880043979.01.T01:CDS |
| GAGATATTGATGAGCATTAT+AGG | 0.261538 | 8:-33725726 | MsG0880043979.01.T01:CDS |
| AATGGCTACATGGAACATTT+TGG | 0.264766 | 8:-33725601 | MsG0880043979.01.T01:CDS |
| GGTAAGCTCAGTACTGAAAT+TGG | 0.267652 | 8:-33727192 | MsG0880043979.01.T01:CDS |
| ATCTTCACCTTCATGAAGTT+TGG | 0.293563 | 8:+33727083 | None:intergenic |
| ATGGCACTGCTGCTGCTAAA+TGG | 0.310932 | 8:-33725666 | MsG0880043979.01.T01:CDS |
| CACCCTTATCAATTACTTCA+AGG | 0.382574 | 8:+33725689 | None:intergenic |
| AAATGTTCCATGTAGCCATT+TGG | 0.413070 | 8:+33725604 | None:intergenic |
| CATCCTTGAAGTAATTGATA+AGG | 0.441221 | 8:-33725692 | MsG0880043979.01.T01:CDS |
| AACACTTATAAGCTCTTTGG+TGG | 0.457999 | 8:-33725748 | MsG0880043979.01.T01:CDS |
| TTCTAAGAAATGGTGCTCTC+TGG | 0.461766 | 8:-33727213 | None:intergenic |
| TATTTGCGCCTTTGACAAGA+TGG | 0.487792 | 8:+33725554 | None:intergenic |
| ATCCTTGAAGTAATTGATAA+GGG | 0.489024 | 8:-33725691 | MsG0880043979.01.T01:CDS |
| ATTTGCGCCTTTGACAAGAT+GGG | 0.520852 | 8:+33725555 | None:intergenic |
| TGACCCTCCAAATGGCTACA+TGG | 0.521176 | 8:-33725611 | MsG0880043979.01.T01:CDS |
| GAGCATATTGACCCTCCAAA+TGG | 0.539495 | 8:-33725619 | MsG0880043979.01.T01:CDS |
| TGTTCCATGTAGCCATTTGG+AGG | 0.542543 | 8:+33725607 | None:intergenic |
| GAAGTAATTGATAAGGGTGA+TGG | 0.549119 | 8:-33725685 | MsG0880043979.01.T01:CDS |
| AGATATTGATGAGCATTATA+GGG | 0.551405 | 8:-33725725 | MsG0880043979.01.T01:CDS |
| CATCATACCAAACTTCATGA+AGG | 0.595182 | 8:-33727090 | MsG0880043979.01.T01:intron |
| GTTGATGCCCATCTTGTCAA+AGG | 0.599351 | 8:-33725562 | MsG0880043979.01.T01:CDS |
| ATAATTCACAACAGATGGCA+AGG | 0.621271 | 8:-33725821 | MsG0880043979.01.T01:intron |
| GTTCCATGTAGCCATTTGGA+GGG | 0.622662 | 8:+33725608 | None:intergenic |
| TAGATTGTAGAACTTATCAG+AGG | 0.623153 | 8:+33727158 | None:intergenic |
| AGATTGTAGAACTTATCAGA+GGG | 0.653447 | 8:+33727159 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAAAAATGTTAATTGTT+AGG | + | Chr8:33725708-33725727 | None:intergenic | 10.0% |
| !!! | AGTTTATTTGTTAAAAAAAT+AGG | - | Chr8:33726833-33726852 | MsG0880043979.01.T01:intron | 10.0% |
| !!! | TGCTTTTAATATTTTTTTTA+TGG | + | Chr8:33726502-33726521 | None:intergenic | 10.0% |
| !! | AATCATATAAAGAATATATG+TGG | - | Chr8:33726703-33726722 | MsG0880043979.01.T01:intron | 15.0% |
| !! | ATAAATAAAATTAACAACAC+TGG | - | Chr8:33726248-33726267 | MsG0880043979.01.T01:intron | 15.0% |
| !! | ATGATTACAAACTATTAAAA+TGG | + | Chr8:33726014-33726033 | None:intergenic | 15.0% |
| !! | GTAAGAATTATGAATTATTT+GGG | - | Chr8:33726666-33726685 | MsG0880043979.01.T01:intron | 15.0% |
| !! | TCATAAAATATGTCAATAAT+TGG | - | Chr8:33726211-33726230 | MsG0880043979.01.T01:intron | 15.0% |
| !! | TCATTAGAAAAAATATTCAT+TGG | - | Chr8:33726762-33726781 | MsG0880043979.01.T01:intron | 15.0% |
| !! | TGTAAGAATTATGAATTATT+TGG | - | Chr8:33726665-33726684 | MsG0880043979.01.T01:intron | 15.0% |
| !!! | AATATAGTAGTTTTCTTTTT+AGG | - | Chr8:33726797-33726816 | MsG0880043979.01.T01:intron | 15.0% |
| !!! | AATTTTATTTATGTTGTACT+GGG | + | Chr8:33726240-33726259 | None:intergenic | 15.0% |
| !!! | ATATAGTAGTTTTCTTTTTA+GGG | - | Chr8:33726798-33726817 | MsG0880043979.01.T01:intron | 15.0% |
| !!! | TAATTTTATTTATGTTGTAC+TGG | + | Chr8:33726241-33726260 | None:intergenic | 15.0% |
| !!! | TGTAGTTTTTTTTTTTTTTG+TGG | + | Chr8:33726433-33726452 | None:intergenic | 15.0% |
| !!! | TTATATCGATTATTTATTAC+TGG | + | Chr8:33726297-33726316 | None:intergenic | 15.0% |
| !! | AATAATCCTCTATAGATATA+AGG | - | Chr8:33726075-33726094 | MsG0880043979.01.T01:intron | 20.0% |
| !!! | AGTTTTTTTTTTTTTTGTGG+TGG | + | Chr8:33726430-33726449 | None:intergenic | 20.0% |
| !!! | CTTTTGATCTAAAAGATATA+AGG | - | Chr8:33725786-33725805 | MsG0880043979.01.T01:CDS | 20.0% |
| !!! | TTAAAGAGATTTGATTTTGT+AGG | - | Chr8:33725953-33725972 | MsG0880043979.01.T01:intron | 20.0% |
| ! | AAAAACACTTATAAGCTCTT+TGG | - | Chr8:33726996-33727015 | MsG0880043979.01.T01:intron | 25.0% |
| ! | AAAATGTCGAAAATAATCCT+AGG | - | Chr8:33726142-33726161 | MsG0880043979.01.T01:intron | 25.0% |
| ! | AATATGTTACTGTAGTTGTT+AGG | + | Chr8:33725736-33725755 | None:intergenic | 25.0% |
| ! | AGATATTGATGAGCATTATA+GGG | - | Chr8:33727022-33727041 | MsG0880043979.01.T01:intron | 25.0% |
| ! | ATCCTTGAAGTAATTGATAA+GGG | - | Chr8:33727056-33727075 | MsG0880043979.01.T01:intron | 25.0% |
| ! | TGATCTAAAAGATATAAGGT+TGG | - | Chr8:33725790-33725809 | MsG0880043979.01.T01:CDS | 25.0% |
| !! | TAGTGATATTTTACCATTGT+CGG | + | Chr8:33726459-33726478 | None:intergenic | 25.0% |
| AGATTGTAGAACTTATCAGA+GGG | + | Chr8:33725591-33725610 | None:intergenic | 30.0% | |
| AGTCAACCTTATATCTATAG+AGG | + | Chr8:33726084-33726103 | None:intergenic | 30.0% | |
| CATCCTTGAAGTAATTGATA+AGG | - | Chr8:33727055-33727074 | MsG0880043979.01.T01:intron | 30.0% | |
| CGAAAATAATCCTAGGTATA+AGG | - | Chr8:33726149-33726168 | MsG0880043979.01.T01:intron | 30.0% | |
| CGACATAATAACATTTGCAA+AGG | - | Chr8:33725980-33725999 | MsG0880043979.01.T01:intron | 30.0% | |
| CTTCGTAAACTTATCTAAGT+TGG | - | Chr8:33726358-33726377 | MsG0880043979.01.T01:intron | 30.0% | |
| GAGATATTGATGAGCATTAT+AGG | - | Chr8:33727021-33727040 | MsG0880043979.01.T01:intron | 30.0% | |
| TAGATTGTAGAACTTATCAG+AGG | + | Chr8:33725592-33725611 | None:intergenic | 30.0% | |
| TTCAAAAGAGTCATAAGTGA+AGG | + | Chr8:33725845-33725864 | None:intergenic | 30.0% | |
| ! | GTTTGTTGAATGTTAGTTTG+CGG | + | Chr8:33725922-33725941 | None:intergenic | 30.0% |
| ! | TCACTTATGACTCTTTTGAA+CGG | - | Chr8:33725845-33725864 | MsG0880043979.01.T01:intron | 30.0% |
| !! | AAAATTAACAACACTGGCTT+TGG | - | Chr8:33726254-33726273 | MsG0880043979.01.T01:intron | 30.0% |
| !! | AGAGATTTGATTTTGTAGGA+AGG | - | Chr8:33725957-33725976 | MsG0880043979.01.T01:intron | 30.0% |
| !! | ATAGATATAAGGTTGACTTG+TGG | - | Chr8:33726086-33726105 | MsG0880043979.01.T01:intron | 30.0% |
| !! | TTTGTTGAATGTTAGTTTGC+GGG | + | Chr8:33725921-33725940 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTTTTGTGGTGGC+CGG | + | Chr8:33726426-33726445 | None:intergenic | 30.0% |
| AAAAACTACACAACCGACAA+TGG | - | Chr8:33726443-33726462 | MsG0880043979.01.T01:intron | 35.0% | |
| AAAAGAGTCATAAGTGAAGG+AGG | + | Chr8:33725842-33725861 | None:intergenic | 35.0% | |
| AAATGTTCCATGTAGCCATT+TGG | + | Chr8:33727146-33727165 | None:intergenic | 35.0% | |
| AACACTTATAAGCTCTTTGG+TGG | - | Chr8:33726999-33727018 | MsG0880043979.01.T01:intron | 35.0% | |
| AACTTCATGAAGGTGAAGAT+TGG | - | Chr8:33725667-33725686 | MsG0880043979.01.T01:CDS | 35.0% | |
| ACAAGTCAAACCTTATACCT+AGG | + | Chr8:33726162-33726181 | None:intergenic | 35.0% | |
| ATAATTCACAACAGATGGCA+AGG | - | Chr8:33726926-33726945 | MsG0880043979.01.T01:intron | 35.0% | |
| ATCTTCACCTTCATGAAGTT+TGG | + | Chr8:33725667-33725686 | None:intergenic | 35.0% | |
| CACCCTTATCAATTACTTCA+AGG | + | Chr8:33727061-33727080 | None:intergenic | 35.0% | |
| CATCATACCAAACTTCATGA+AGG | - | Chr8:33725657-33725676 | MsG0880043979.01.T01:CDS | 35.0% | |
| CCATCATAATTCACAACAGA+TGG | - | Chr8:33726921-33726940 | MsG0880043979.01.T01:intron | 35.0% | |
| CCATCTGTTGTGAATTATGA+TGG | + | Chr8:33726924-33726943 | None:intergenic | 35.0% | |
| CTTGAAAATCTCATGCCAAA+TGG | - | Chr8:33725894-33725913 | MsG0880043979.01.T01:intron | 35.0% | |
| GAAGTAATTGATAAGGGTGA+TGG | - | Chr8:33727062-33727081 | MsG0880043979.01.T01:intron | 35.0% | |
| TGAGCATTATAGGGTCTTTA+AGG | - | Chr8:33727031-33727050 | MsG0880043979.01.T01:intron | 35.0% | |
| TGTTGTGAATTATGATGGCA+CGG | + | Chr8:33726919-33726938 | None:intergenic | 35.0% | |
| ! | AATGGCTACATGGAACATTT+TGG | - | Chr8:33727146-33727165 | MsG0880043979.01.T01:CDS | 35.0% |
| !! | ATATAAGGTTGACTTGTGGT+TGG | - | Chr8:33726090-33726109 | MsG0880043979.01.T01:intron | 35.0% |
| !! | TAGGTATAAGGTTTGACTTG+TGG | - | Chr8:33726161-33726180 | MsG0880043979.01.T01:intron | 35.0% |
| !! | TATAAGGTTTGACTTGTGGT+TGG | - | Chr8:33726165-33726184 | MsG0880043979.01.T01:intron | 35.0% |
| !! | TTTGGCATGAGATTTTCAAG+TGG | + | Chr8:33725894-33725913 | None:intergenic | 35.0% |
| !!! | TTTTTTTTTTTGTGGTGGCC+GGG | + | Chr8:33726425-33726444 | None:intergenic | 35.0% |
| ATTTGCGCCTTTGACAAGAT+GGG | + | Chr8:33727195-33727214 | None:intergenic | 40.0% | |
| CATTATACATGCAACGTCCA+GGG | - | Chr8:33726392-33726411 | MsG0880043979.01.T01:intron | 40.0% | |
| GTTGTGAATTATGATGGCAC+GGG | + | Chr8:33726918-33726937 | None:intergenic | 40.0% | |
| TAAGTGAAGGAGGTGATTGA+AGG | + | Chr8:33725832-33725851 | None:intergenic | 40.0% | |
| TATTTGCGCCTTTGACAAGA+TGG | + | Chr8:33727196-33727215 | None:intergenic | 40.0% | |
| ! | GGTAAGCTCAGTACTGAAAT+TGG | - | Chr8:33725555-33725574 | MsG0880043979.01.T01:CDS | 40.0% |
| !!! | GCATGAGATTTTCAAGTGGA+AGG | + | Chr8:33725890-33725909 | None:intergenic | 40.0% |
| !!! | TTTTTTTTTTGTGGTGGCCG+GGG | + | Chr8:33726424-33726443 | None:intergenic | 40.0% |
| GAGCATATTGACCCTCCAAA+TGG | - | Chr8:33727128-33727147 | MsG0880043979.01.T01:CDS | 45.0% | |
| GCATTATACATGCAACGTCC+AGG | - | Chr8:33726391-33726410 | MsG0880043979.01.T01:intron | 45.0% | |
| GTTCCATGTAGCCATTTGGA+GGG | + | Chr8:33727142-33727161 | None:intergenic | 45.0% | |
| GTTGATGCCCATCTTGTCAA+AGG | - | Chr8:33727185-33727204 | MsG0880043979.01.T01:CDS | 45.0% | |
| TGAAGGAGGTGATTGAAGGA+GGG | + | Chr8:33725828-33725847 | None:intergenic | 45.0% | |
| TGTTCCATGTAGCCATTTGG+AGG | + | Chr8:33727143-33727162 | None:intergenic | 45.0% | |
| !! | TGTTAGTTTGCGGGACCATT+TGG | + | Chr8:33725912-33725931 | None:intergenic | 45.0% |
| !!! | ACAATAAATATTTAATTTAT+AGG | + | Chr8:33726733-33726752 | None:intergenic | 5.0% |
| ATGGCACTGCTGCTGCTAAA+TGG | - | Chr8:33727081-33727100 | MsG0880043979.01.T01:intron | 50.0% | |
| GAGGTGATTGAAGGAGGGAT+AGG | + | Chr8:33725823-33725842 | None:intergenic | 50.0% | |
| GTGAAGGAGGTGATTGAAGG+AGG | + | Chr8:33725829-33725848 | None:intergenic | 50.0% | |
| TGACCCTCCAAATGGCTACA+TGG | - | Chr8:33727136-33727155 | MsG0880043979.01.T01:CDS | 50.0% | |
| AACGTCCAGGGTTCAAACCC+CGG | - | Chr8:33726404-33726423 | MsG0880043979.01.T01:intron | 55.0% | |
| GGTGGCCGGGGTTTGAACCC+TGG | + | Chr8:33726412-33726431 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 33725543 | 33727226 | 33725543 | ID=MsG0880043979.01;Name=MsG0880043979.01 |
| Chr8 | mRNA | 33725543 | 33727226 | 33725543 | ID=MsG0880043979.01.T01;Parent=MsG0880043979.01;Name=MsG0880043979.01.T01;_AED=0.50;_eAED=0.51;_QI=0|0|0|1|1|1|2|0|140 |
| Chr8 | exon | 33727091 | 33727226 | 33727091 | ID=MsG0880043979.01.T01:exon:10244;Parent=MsG0880043979.01.T01 |
| Chr8 | exon | 33725543 | 33725829 | 33725543 | ID=MsG0880043979.01.T01:exon:10243;Parent=MsG0880043979.01.T01 |
| Chr8 | CDS | 33727091 | 33727226 | 33727091 | ID=MsG0880043979.01.T01:cds;Parent=MsG0880043979.01.T01 |
| Chr8 | CDS | 33725543 | 33725829 | 33725543 | ID=MsG0880043979.01.T01:cds;Parent=MsG0880043979.01.T01 |
| Gene Sequence |
| Protein sequence |
