AlfalfaGEDB | MsG0880044888.01

M. sativa cultivar ZhongmuNo.1 / MsG0880044888.01

KEGG: -
GO: GO:0005515
PFAM: PF00646 PF08387

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044888.01.T01	XP_003628590.2	81.091	275	49	3	1	275	1	272	5.86E-146	436
MsG0880044888.01.T01	XP_003628590.2	89.256	242	23	2	269	510	195	433	3.03E-145	434

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044888.01.T01	Q9SV82	27.345	501	251	18	24	504	1	408	3.25E-21	99.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044888.01.T01	G7LEM1	81.091	275	49	3	1	275	1	272	2.80e-146	436

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
MsG0080048094.01	MsG0880044888.01	PPI
MsG0280006326.01	MsG0880044888.01	PPI
MsG0280006373.01	MsG0880044888.01	PPI
MsG0280006373.01	MsG0880044888.01	PPI
MsG0280006398.01	MsG0880044888.01	PPI
MsG0280010541.01	MsG0880044888.01	PPI
MsG0280011351.01	MsG0880044888.01	PPI
MsG0380016794.01	MsG0880044888.01	PPI
MsG0380017479.01	MsG0880044888.01	PPI
MsG0380017513.01	MsG0880044888.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044888.01.T01	MTR_8g062310	81.091	275	49	3	1	275	1	272	7.10e-150	436
MsG0880044888.01.T01	MTR_8g062310	89.256	242	23	2	269	510	195	433	3.67e-149	434
MsG0880044888.01.T01	MTR_8g070950	49.328	521	163	13	6	510	4	439	2.69e-146	427
MsG0880044888.01.T01	MTR_8g469020	45.490	510	194	10	25	510	7	456	4.42e-131	389
MsG0880044888.01.T01	MTR_8g062080	47.419	523	179	17	1	505	1	445	7.18e-128	380
MsG0880044888.01.T01	MTR_8g062300	43.333	540	216	13	1	509	1	481	1.50e-121	365
MsG0880044888.01.T01	MTR_4g050250	43.532	487	172	17	1	451	1	420	8.28e-106	323
MsG0880044888.01.T01	MTR_8g062010	69.082	207	61	2	302	505	224	430	1.48e-90	284
MsG0880044888.01.T01	MTR_8g062010	50.746	268	113	9	25	275	9	274	1.27e-65	219
MsG0880044888.01.T01	MTR_8g058965	60.965	228	75	3	292	506	231	457	1.75e-79	256

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044888.01.T01	AT4G10400	27.345	501	251	18	24	504	1	408	3.32e-22	99.4
MsG0880044888.01.T01	AT4G10400	27.345	501	251	18	24	504	1	408	3.32e-22	99.4
MsG0880044888.01.T01	AT4G10400	27.345	501	251	18	24	504	1	408	3.32e-22	99.4
MsG0880044888.01.T01	AT5G56370	25.984	508	261	19	24	504	1	420	6.29e-21	95.5
MsG0880044888.01.T01	AT5G56370	25.984	508	261	19	24	504	1	420	6.29e-21	95.5
MsG0880044888.01.T01	AT4G09920	29.730	296	187	9	24	306	1	288	2.61e-20	92.0
MsG0880044888.01.T01	AT4G09920	29.730	296	187	9	24	306	1	288	2.61e-20	92.0
MsG0880044888.01.T01	AT4G09920	30.249	281	180	8	24	291	1	278	4.78e-20	90.9
MsG0880044888.01.T01	AT4G09920	30.249	281	180	8	24	291	1	278	4.78e-20	90.9
MsG0880044888.01.T01	AT4G09920	30.249	281	180	8	24	291	1	278	4.78e-20	90.9

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Find 133 sgRNAs with CRISPR-Local

Find 521 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACATCTTCTTCAGTGA+TGG	0.494181	8:+50952602	None:intergenic
AAAGATTAACAAATATACCG+AGG	0.643261	8:-50951451	MsG0880044888.01.T01:CDS
AACAAATTCACTTTGACAAT+AGG	0.361112	8:+50952118	None:intergenic
AACAAATTCACTTTGACAAT+AGG	0.361112	8:+50952340	None:intergenic
AACCATCATCTTTACCAACA+TGG	0.588791	8:-50951664	MsG0880044888.01.T01:CDS
AACCTTCAAATCTTCTAGCT+TGG	0.392889	8:+50952529	None:intergenic
AACTTAACTTTGACGCAGAT+GGG	0.474068	8:-50951412	MsG0880044888.01.T01:CDS
AAGAAAACGAAAAGCTTGCA+CGG	0.629248	8:-50953263	MsG0880044888.01.T01:CDS
AAGATTAACAAATATACCGA+GGG	0.582923	8:-50951450	MsG0880044888.01.T01:CDS
AAGCTTTCTCCAGCTCCAAG+AGG	0.646864	8:-50952256	MsG0880044888.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATCAGAAGGAAGCTTTA+CGG	-	Chr8:50949896-50949915	MsG0880044888.01.T01:intron	30.0%
AAACATCTAAAGAGAAGTTG+GGG	+	Chr8:50952265-50952284	None:intergenic	30.0%
AACCATAGATTTATGAAGCA+CGG	-	Chr8:50948867-50948886	MsG0880044888.01.T01:intron	30.0%
AAGTCGAATGTATTGAAATG+TGG	-	Chr8:50945558-50945577	MsG0880044888.01.T01:intron	30.0%
AATGACTAGTGTTATGAACT+TGG	-	Chr8:50949575-50949594	MsG0880044888.01.T01:intron	30.0%
ACACCAATGATAATTTCACT+TGG	-	Chr8:50946068-50946087	MsG0880044888.01.T01:intron	30.0%
ACAGATACTAATAGATTTGG+AGG	-	Chr8:50949530-50949549	MsG0880044888.01.T01:intron	30.0%
ACAGTTAGAAACAAACAACA+AGG	+	Chr8:50948232-50948251	None:intergenic	30.0%
ACGACAGATACTAATAGATT+TGG	-	Chr8:50949527-50949546	MsG0880044888.01.T01:intron	30.0%
AGAGCATATATACAATGACA+TGG	+	Chr8:50949253-50949272	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	50945198	50953337	50945198	ID=MsG0880044888.01;Name=MsG0880044888.01
Chr8	mRNA	50945198	50953337	50945198	ID=MsG0880044888.01.T01;Parent=MsG0880044888.01;Name=MsG0880044888.01.T01;_AED=0.28;_eAED=0.28;_QI=29\|1\|0.8\|1\|0.75\|0.6\|5\|251\|510
Chr8	exon	50945198	50945447	50945198	ID=MsG0880044888.01.T01:exon:21629;Parent=MsG0880044888.01.T01
Chr8	exon	50951402	50951690	50951402	ID=MsG0880044888.01.T01:exon:21628;Parent=MsG0880044888.01.T01
Chr8	exon	50951810	50951959	50951810	ID=MsG0880044888.01.T01:exon:21627;Parent=MsG0880044888.01.T01
Chr8	exon	50952046	50952673	50952046	ID=MsG0880044888.01.T01:exon:21626;Parent=MsG0880044888.01.T01
Chr8	exon	50952842	50953337	50952842	ID=MsG0880044888.01.T01:exon:21625;Parent=MsG0880044888.01.T01
Chr8	five_prime_UTR	50953309	50953337	50953309	ID=MsG0880044888.01.T01:five_prime_utr;Parent=MsG0880044888.01.T01
Chr8	CDS	50952842	50953308	50952842	ID=MsG0880044888.01.T01:cds;Parent=MsG0880044888.01.T01
Chr8	CDS	50952046	50952673	50952046	ID=MsG0880044888.01.T01:cds;Parent=MsG0880044888.01.T01
Chr8	CDS	50951810	50951959	50951810	ID=MsG0880044888.01.T01:cds;Parent=MsG0880044888.01.T01
Chr8	CDS	50951403	50951690	50951403	ID=MsG0880044888.01.T01:cds;Parent=MsG0880044888.01.T01
Chr8	three_prime_UTR	50951402	50951402	50951402	ID=MsG0880044888.01.T01:three_prime_utr;Parent=MsG0880044888.01.T01
Chr8	three_prime_UTR	50945198	50945447	50945198	ID=MsG0880044888.01.T01:three_prime_utr;Parent=MsG0880044888.01.T01

Gene Sequence

>MsG0880044888.01.T01

ATGGCGCCCAAGTTAGCCTCTAAAAGAAAACGAAAAGCTTGCACGGCGACGACAAGTGGAGGCACCCAGATGGACAGATTGAGCAGTCTACCGGACTCAGTTCTGTGTCATATCATGTCCTTCCTCCCAACAATAACGTCCGTTACGACCATGAGCCGTTTGTCTTCTAGGTGGCGCCACCTGTGGAAGGATCTTCAGGCCTTCCACTTCGACAACCTTGGCGTCTCAGATAGCTTCAAAAGGTTTGCATTTTTTGTGAACGCTGTGCTTGCCCTCCGCAGATCGCGCCACATTCAAAAGTTCCATTTCACCTGTAAATTTCGTGAATACGAAGTCGAATGTATTGAAATGTGGGTCCGTGCTGCCATTGGCCCCGGCCTTGAAGAACTTGATCTCGACATCTATGAAGCTGACATAAACCTACCTCCTTCCTTCTTCATGAGCTGCAACAACCTCGTTTCCCTCAGTCTATCTGGTGAATTCAAAACGGAGGTTAAACATTCTTTAGTGCAATTTCCATCACTGAAGAAGATGTGTTTAAACAGCACAGTGGATTCAGATTTAATAGTTGCCTTTCTCTCTGGCTGCCCCAAGCTAGAAGATTTGAAGGTTAATTGTGTGGATGGAATCAGTTTGGCTAAAGCTTTCTCCAGCTCCAAGAGGTTGTTGAAATACACCAATGATAATTTCACTTGGACTTTTCTTGGTCCTGGTGGCTACAGATTGGGCATTGCAGGCAACTTTCACACTATGGCGGAAGCATTTCTTGATGTCTTCTCCTATTGTCAAAGTGAATTTGTTGACCCTATTCTCAATGACCTTCAAATGATGATAATGTGTGTGGATGGAATCAGTTTGGCTAAAGCTTTCTCCAGCTCCAAGAGGTTGTTGAAATACACCAATGATAATTTCACTTGGACTTTTCTTGGTCCTGGTGGCTACAGATTGGGCATTGCAGGCAACTTTCACACTATGGCGGAAGCATTTCTTGATGTCTTCTCCTATTGTCAAAGTGAATTTGTTGACCCTATTCTCAATGACCTTCAAAATGATGATAATGAATTATATCTAGTGTCACGTCATTCAACATCAAAGTGGCCACTTCAGGTTCCTGTTATAAATTATCCAGAATTTCGCGATTTAGAACATCTAAAGTTCACTCTTCCCTGTTTTAACTCAAATATTCTGGTCAACGTGCTTGAGAAATGTCATGACCTTAAAGTTCTCATAATCAATAGCCACAAGGAGGAACCATCATCTTTACCAACATGGGAGCCACAATCAACAACTGTTCCTAGATGTCTCATATCCCACCTGAAGTATATTTGCATAGAAGGATATCAAGGATTTGAAGACGAGCTGACATTTGCCGAATTTATTTTGCGTAACGGACTTGTTTTGGAGACAATGCTTATTTTTGTTGACATTTCACTGGACATAACAAACAAGTACCGTTCTATCAAAAGATTAACAAATATACCGAGGGGATCTGTGACATGCCAACTTAACTTTGACGCAGATGGGTCTCCTTAA

Protein sequence

>MsG0880044888.01.T01

MAPKLASKRKRKACTATTSGGTQMDRLSSLPDSVLCHIMSFLPTITSVTTMSRLSSRWRHLWKDLQAFHFDNLGVSDSFKRFAFFVNAVLALRRSRHIQKFHFTCKFREYEVECIEMWVRAAIGPGLEELDLDIYEADINLPPSFFMSCNNLVSLSLSGEFKTEVKHSLVQFPSLKKMCLNSTVDSDLIVAFLSGCPKLEDLKVNCVDGISLAKAFSSSKRLLKYTNDNFTWTFLGPGGYRLGIAGNFHTMAEAFLDVFSYCQSEFVDPILNDLQMMIMCVDGISLAKAFSSSKRLLKYTNDNFTWTFLGPGGYRLGIAGNFHTMAEAFLDVFSYCQSEFVDPILNDLQNDDNELYLVSRHSTSKWPLQVPVINYPEFRDLEHLKFTLPCFNSNILVNVLEKCHDLKVLIINSHKEEPSSLPTWEPQSTTVPRCLISHLKYICIEGYQGFEDELTFAEFILRNGLVLETMLIFVDISLDITNKYRSIKRLTNIPRGSVTCQLNFDADGSP*