AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017479.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017479.01.T01 MTR_3g108150 92.896 183 13 0 57 239 24 206 1.81e-119 346
MsG0380017479.01.T01 MTR_7g088260 53.043 230 94 4 18 234 53 281 1.31e-67 216
MsG0380017479.01.T01 MTR_3g108560 55.682 176 73 2 57 231 31 202 1.57e-59 190
MsG0380017479.01.T01 MTR_3g108560 55.682 176 73 2 57 231 31 202 8.97e-59 191
MsG0380017479.01.T01 MTR_0492s0020 56.471 170 67 3 57 224 97 261 3.11e-54 180
MsG0380017479.01.T01 MTR_0492s0020 75.676 37 9 0 57 93 23 59 7.54e-12 64.7
MsG0380017479.01.T01 MTR_0543s0010 56.471 170 67 3 57 224 97 261 4.43e-54 180
MsG0380017479.01.T01 MTR_0543s0010 75.676 37 9 0 57 93 23 59 7.60e-12 64.7
MsG0380017479.01.T01 MTR_3g109982 56.805 169 68 3 57 222 24 190 2.47e-52 181
MsG0380017479.01.T01 MTR_3g109982 62.319 69 26 0 156 224 215 283 1.56e-19 87.4
MsG0380017479.01.T01 MTR_3g110010 56.805 169 68 3 57 222 24 190 2.49e-52 181
MsG0380017479.01.T01 MTR_3g110010 62.319 69 26 0 156 224 215 283 1.88e-19 87.4
MsG0380017479.01.T01 MTR_3g087260 51.163 172 71 3 57 228 23 181 1.55e-47 163
MsG0380017479.01.T01 MTR_3g087260 60.241 83 30 2 143 224 185 265 4.75e-22 94.4
MsG0380017479.01.T01 MTR_7g115270 44.022 184 90 4 58 228 24 207 1.14e-40 144
MsG0380017479.01.T01 MTR_1g041245 48.837 172 81 3 58 223 23 193 1.93e-39 140
MsG0380017479.01.T01 MTR_7g098510 45.294 170 89 2 58 223 30 199 1.49e-38 138
MsG0380017479.01.T01 MTR_7g056447 47.024 168 80 3 58 219 21 185 1.16e-37 133
MsG0380017479.01.T01 MTR_7g056433 43.017 179 95 3 57 228 23 201 6.36e-37 134
MsG0380017479.01.T01 MTR_3g036250 40.212 189 104 3 58 239 17 203 2.08e-36 132
MsG0380017479.01.T01 MTR_7g098480 45.930 172 89 2 58 225 30 201 2.70e-36 134
MsG0380017479.01.T01 MTR_7g032370 45.763 177 90 3 58 229 2 177 4.29e-36 130
MsG0380017479.01.T01 MTR_3g023630 44.134 179 92 4 58 230 20 196 7.50e-36 130
MsG0380017479.01.T01 MTR_7g098570 45.349 172 88 3 57 223 31 201 1.44e-35 132
MsG0380017479.01.T01 MTR_4g134150 44.000 175 91 3 59 229 23 194 1.85e-35 126
MsG0380017479.01.T01 MTR_7g032380 45.714 175 88 4 58 226 23 196 3.98e-35 128
MsG0380017479.01.T01 MTR_7g033945 48.000 150 69 2 58 198 23 172 1.57e-34 122
MsG0380017479.01.T01 MTR_3g040700 40.341 176 98 2 58 226 55 230 3.21e-34 127
MsG0380017479.01.T01 MTR_8g085430 42.162 185 93 4 58 229 23 206 3.99e-34 125
MsG0380017479.01.T01 MTR_7g034115 45.614 171 86 3 58 222 23 192 6.43e-33 123
MsG0380017479.01.T01 MTR_7g033915 43.678 174 70 3 58 222 23 177 2.23e-32 121
MsG0380017479.01.T01 MTR_7g056020 44.767 172 84 2 57 228 27 187 1.76e-31 122
MsG0380017479.01.T01 MTR_7g056420 40.909 176 73 3 57 228 20 168 1.56e-30 119
MsG0380017479.01.T01 MTR_7g056430 40.909 176 73 3 57 228 20 168 1.65e-30 119
MsG0380017479.01.T01 MTR_3g467400 39.500 200 100 6 58 236 15 214 4.45e-30 115
MsG0380017479.01.T01 MTR_7g033990 44.324 185 81 6 58 226 23 201 3.06e-29 114
MsG0380017479.01.T01 MTR_7g114710 40.698 172 97 2 58 224 25 196 5.04e-29 112
MsG0380017479.01.T01 MTR_7g034110 43.750 176 86 4 58 223 23 195 2.71e-27 107
MsG0380017479.01.T01 MTR_7g033940 52.336 107 45 2 58 159 106 211 1.93e-26 102
MsG0380017479.01.T01 MTR_5g008920 37.000 200 111 4 49 238 15 209 5.89e-26 104
MsG0380017479.01.T01 MTR_3g105060 39.535 172 98 3 58 224 26 196 7.65e-26 103
MsG0380017479.01.T01 MTR_3g082890 40.230 174 90 6 58 222 29 197 1.41e-25 103
MsG0380017479.01.T01 MTR_3g082890 40.462 173 89 6 58 221 109 276 1.58e-25 104
MsG0380017479.01.T01 MTR_5g012840 39.412 170 95 3 70 233 13 180 6.89e-25 100
MsG0380017479.01.T01 MTR_7g007080 34.946 186 103 3 58 229 16 197 6.06e-23 96.3
MsG0380017479.01.T01 MTR_3g107100 38.122 181 96 6 58 227 23 198 9.16e-22 93.2
MsG0380017479.01.T01 MTR_5g008950 37.017 181 94 6 58 228 11 181 4.02e-21 90.9
MsG0380017479.01.T01 MTR_7g060470 36.649 191 109 5 58 238 15 203 4.77e-21 90.9
MsG0380017479.01.T01 MTR_5g073420 35.593 177 101 6 58 223 23 197 1.11e-20 89.7
MsG0380017479.01.T01 MTR_3g114200 42.636 129 69 3 58 182 31 158 1.63e-20 85.1
MsG0380017479.01.T01 MTR_3g107160 34.409 186 111 4 58 233 22 206 2.23e-20 89.0
MsG0380017479.01.T01 MTR_3g071850 33.516 182 104 5 59 227 37 214 2.87e-20 89.7
MsG0380017479.01.T01 MTR_7g056287 34.615 182 104 4 58 228 15 192 1.39e-19 86.7
MsG0380017479.01.T01 MTR_1g107385 36.318 201 105 5 58 235 44 244 2.94e-19 86.3
MsG0380017479.01.T01 MTR_7g026500 36.464 181 100 7 58 224 26 205 4.96e-19 85.5
MsG0380017479.01.T01 MTR_7g056277 34.066 182 105 4 58 228 271 448 6.50e-19 85.5
MsG0380017479.01.T01 MTR_6g040270 35.673 171 105 3 58 223 20 190 9.18e-19 84.3
MsG0380017479.01.T01 MTR_3g107120 36.979 192 93 5 58 226 21 207 1.44e-18 84.0
MsG0380017479.01.T01 MTR_6g044560 32.512 203 94 6 58 222 190 387 1.58e-18 84.3
MsG0380017479.01.T01 MTR_6g044572 32.512 203 94 6 58 222 14 211 2.08e-18 83.6
MsG0380017479.01.T01 MTR_1g066830 34.239 184 106 5 59 234 21 197 3.92e-18 82.8
MsG0380017479.01.T01 MTR_1g085120 31.579 190 114 4 58 236 104 288 7.24e-18 82.4
MsG0380017479.01.T01 MTR_1g085120 31.579 190 114 4 58 236 191 375 8.22e-18 82.4
MsG0380017479.01.T01 MTR_1g085120 31.579 190 114 4 58 236 179 363 9.78e-18 82.0
MsG0380017479.01.T01 MTR_5g061680 36.158 177 98 6 58 223 23 195 1.06e-17 80.9
MsG0380017479.01.T01 MTR_2g007500 35.260 173 94 4 58 223 26 187 1.77e-17 80.5
MsG0380017479.01.T01 MTR_4g039440 33.146 178 106 4 58 228 46 217 2.20e-17 80.9
MsG0380017479.01.T01 MTR_6g045333 34.426 183 103 5 58 227 73 251 3.55e-17 80.5
MsG0380017479.01.T01 MTR_5g058100 35.714 182 96 5 58 226 21 194 6.66e-17 79.3
MsG0380017479.01.T01 MTR_5g007410 34.615 182 97 6 58 225 38 211 1.03e-16 79.0
MsG0380017479.01.T01 MTR_2g005990 35.870 184 99 6 58 222 18 201 3.20e-16 77.4
MsG0380017479.01.T01 MTR_2g007450 31.818 198 110 6 57 229 27 224 4.20e-16 77.0
MsG0380017479.01.T01 MTR_6g022500 35.519 183 100 5 58 229 113 288 1.03e-15 76.3
MsG0380017479.01.T01 MTR_2g020170 45.545 101 47 4 58 151 34 133 1.19e-15 72.0
MsG0380017479.01.T01 MTR_6g011460 31.053 190 115 5 58 236 58 242 1.72e-15 75.5
MsG0380017479.01.T01 MTR_5g058000 37.017 181 99 7 58 229 20 194 2.90e-15 74.3
MsG0380017479.01.T01 MTR_5g013500 32.680 153 81 5 81 228 30 165 3.92e-15 73.9
MsG0380017479.01.T01 MTR_5g045510 33.898 177 99 6 58 223 24 193 4.88e-15 73.9
MsG0380017479.01.T01 MTR_7g075820 31.088 193 106 5 57 222 17 209 5.06e-15 73.9
MsG0380017479.01.T01 MTR_5g083890 32.836 201 90 5 58 223 18 208 5.94e-15 73.9
MsG0380017479.01.T01 MTR_7g007340 33.143 175 90 4 58 227 25 177 8.80e-15 73.2
MsG0380017479.01.T01 MTR_5g073340 35.366 164 85 4 58 221 20 162 2.18e-14 71.6
MsG0380017479.01.T01 MTR_4g080610 31.977 172 88 3 57 228 23 165 2.50e-14 71.6
MsG0380017479.01.T01 MTR_8g062080 31.754 211 112 9 43 225 7 213 2.71e-14 72.0
MsG0380017479.01.T01 MTR_1g108820 36.842 171 93 7 59 221 21 184 2.81e-14 71.6
MsG0380017479.01.T01 MTR_4g032730 34.211 190 99 7 58 225 27 212 2.83e-14 72.0
MsG0380017479.01.T01 MTR_1g108820 36.842 171 93 7 59 221 21 184 4.37e-14 70.9
MsG0380017479.01.T01 MTR_7g034120 39.344 122 63 3 112 222 4 125 4.73e-14 70.5
MsG0380017479.01.T01 MTR_1089s0010 33.728 169 107 3 58 221 20 188 5.59e-14 70.9
MsG0380017479.01.T01 MTR_1g053025 33.333 180 99 6 59 221 16 191 8.32e-14 70.5
MsG0380017479.01.T01 MTR_7g034090 37.857 140 65 4 58 183 16 147 8.74e-14 70.5
MsG0380017479.01.T01 MTR_3g099830 33.333 171 96 3 58 222 24 182 9.21e-14 70.1
MsG0380017479.01.T01 MTR_2g007400 34.054 185 100 7 59 222 25 208 1.03e-13 70.1
MsG0380017479.01.T01 MTR_1g095750 46.250 80 37 2 58 131 58 137 1.44e-13 66.2
MsG0380017479.01.T01 MTR_5g084070 37.278 169 95 7 58 221 25 187 1.49e-13 69.7
MsG0380017479.01.T01 MTR_3g095600 31.214 173 90 5 58 222 16 167 1.55e-13 68.9
MsG0380017479.01.T01 MTR_2g007360 34.463 177 76 8 58 222 24 172 2.50e-13 68.9
MsG0380017479.01.T01 MTR_0009s0080 33.880 183 104 7 58 228 30 207 2.95e-13 68.9
MsG0380017479.01.T01 MTR_3g107140 36.782 174 82 7 77 227 23 191 3.89e-13 66.6
MsG0380017479.01.T01 MTR_4g098590 31.579 190 111 6 58 229 11 199 1.53e-12 66.6
MsG0380017479.01.T01 MTR_8g014160 34.715 193 95 9 58 225 53 239 2.01e-12 66.2
MsG0380017479.01.T01 MTR_4g050250 28.571 245 126 11 38 234 2 245 2.38e-12 66.2
MsG0380017479.01.T01 MTR_7g098590 39.806 103 51 2 58 154 30 127 2.48e-12 62.8
MsG0380017479.01.T01 MTR_6g022360 33.333 177 95 5 58 226 55 216 3.09e-12 65.9
MsG0380017479.01.T01 MTR_4g093690 32.961 179 96 6 58 220 30 200 3.29e-12 65.1
MsG0380017479.01.T01 MTR_2g100590 30.055 183 107 6 57 221 53 232 3.98e-12 65.5
MsG0380017479.01.T01 MTR_2g100590 30.055 183 107 6 57 221 53 232 4.19e-12 65.5
MsG0380017479.01.T01 MTR_2g100590 30.055 183 107 6 57 221 53 232 4.62e-12 65.5
MsG0380017479.01.T01 MTR_5g073370 34.857 175 100 5 58 221 17 188 4.94e-12 65.1
MsG0380017479.01.T01 MTR_7g081290 50.000 72 33 1 58 126 30 101 7.27e-12 63.9
MsG0380017479.01.T01 MTR_4g080590 29.480 173 116 4 57 224 34 205 1.38e-11 63.9
MsG0380017479.01.T01 MTR_4g080590 29.480 173 116 4 57 224 34 205 1.75e-11 63.5
MsG0380017479.01.T01 MTR_7g056417 47.222 72 36 1 159 228 5 76 2.51e-11 60.5
MsG0380017479.01.T01 MTR_3g113782 70.270 37 11 0 57 93 28 64 3.47e-11 58.5
MsG0380017479.01.T01 MTR_1g492880 45.833 72 37 1 58 127 18 89 5.72e-11 58.5
MsG0380017479.01.T01 MTR_1g492880 45.833 72 37 1 58 127 18 89 6.03e-11 57.8
MsG0380017479.01.T01 MTR_8g468910 30.667 150 94 4 58 197 60 209 6.68e-11 62.0
MsG0380017479.01.T01 MTR_8g467800 30.556 180 103 5 58 222 32 204 8.51e-11 61.2
MsG0380017479.01.T01 MTR_8g062010 30.526 190 111 8 58 232 21 204 9.32e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017479.01.T01 AT5G41840 34.737 190 93 7 58 221 26 210 1.76e-17 81.6
MsG0380017479.01.T01 AT1G58310 33.023 215 107 8 46 227 5 215 4.67e-17 80.1
MsG0380017479.01.T01 AT3G59200 33.702 181 97 7 58 221 19 193 6.76e-17 79.0
MsG0380017479.01.T01 AT3G59200 33.702 181 97 7 58 221 19 193 1.34e-16 79.0
MsG0380017479.01.T01 AT5G41830 34.225 187 97 8 58 221 25 208 5.55e-16 77.0
MsG0380017479.01.T01 AT3G50710 31.579 171 109 3 59 221 15 185 5.99e-16 76.6
MsG0380017479.01.T01 AT1G16930 29.762 168 113 3 58 221 27 193 1.73e-15 75.5
MsG0380017479.01.T01 AT1G16930 29.762 168 113 3 58 221 27 193 1.73e-15 75.5
MsG0380017479.01.T01 AT1G16930 29.762 168 113 3 58 221 27 193 1.73e-15 75.5
MsG0380017479.01.T01 AT3G59210 34.807 181 95 7 58 221 19 193 1.85e-15 75.5
MsG0380017479.01.T01 AT3G59210 34.807 181 95 7 58 221 19 193 1.85e-15 75.5
MsG0380017479.01.T01 AT3G59210 34.807 181 95 7 58 221 19 193 1.85e-15 75.5
MsG0380017479.01.T01 AT3G59210 34.807 181 95 7 58 221 19 193 1.85e-15 75.5
MsG0380017479.01.T01 AT3G59210 34.807 181 95 7 58 221 19 193 1.85e-15 75.5
MsG0380017479.01.T01 AT4G14096 36.364 176 99 6 56 221 18 190 2.72e-15 75.1
MsG0380017479.01.T01 AT4G14096 36.364 176 99 6 56 221 18 190 2.72e-15 75.1
MsG0380017479.01.T01 AT4G00315 33.143 175 108 5 59 224 15 189 4.66e-15 74.3
MsG0380017479.01.T01 AT3G59240 32.584 178 103 7 58 221 20 194 5.16e-15 74.3
MsG0380017479.01.T01 AT4G26340 35.673 171 106 4 58 224 14 184 8.79e-15 73.2
MsG0380017479.01.T01 AT4G00320 33.514 185 101 7 58 221 25 208 1.48e-14 72.8
MsG0380017479.01.T01 AT5G18780 30.994 171 107 4 58 222 23 188 1.49e-14 72.4
MsG0380017479.01.T01 AT5G18780 30.994 171 107 4 58 222 23 188 1.49e-14 72.4
MsG0380017479.01.T01 AT1G69630 35.260 173 105 3 58 224 30 201 1.49e-14 72.8
MsG0380017479.01.T01 AT5G18780 31.176 170 106 4 58 221 23 187 1.84e-14 72.4
MsG0380017479.01.T01 AT5G18780 31.176 170 106 4 58 221 23 187 1.84e-14 72.4
MsG0380017479.01.T01 AT5G22660 34.132 167 105 4 58 221 25 189 2.08e-14 72.4
MsG0380017479.01.T01 AT5G56420 35.088 171 101 6 58 221 18 185 2.64e-14 72.0
MsG0380017479.01.T01 AT5G56420 35.088 171 101 6 58 221 18 185 2.64e-14 72.0
MsG0380017479.01.T01 AT5G56420 35.088 171 101 6 58 221 18 185 2.64e-14 72.0
MsG0380017479.01.T01 AT5G22660 34.524 168 103 5 58 221 25 189 3.55e-14 70.9
MsG0380017479.01.T01 AT1G55660 34.659 176 104 5 59 224 66 240 6.51e-14 70.5
MsG0380017479.01.T01 AT1G55660 34.659 176 104 5 59 224 66 240 6.95e-14 70.9
MsG0380017479.01.T01 AT3G58880 36.464 181 93 8 58 221 15 190 7.77e-14 70.5
MsG0380017479.01.T01 AT3G44810 35.135 185 92 7 58 221 19 196 9.39e-14 70.5
MsG0380017479.01.T01 AT5G38392 32.620 187 97 8 58 221 14 194 1.13e-13 68.2
MsG0380017479.01.T01 AT4G09920 34.682 173 98 5 59 221 15 182 1.18e-13 69.3
MsG0380017479.01.T01 AT4G09920 34.682 173 98 5 59 221 15 182 1.18e-13 69.3
MsG0380017479.01.T01 AT4G09920 34.682 173 98 5 59 221 15 182 1.18e-13 69.3
MsG0380017479.01.T01 AT4G09920 34.682 173 98 5 59 221 15 182 1.42e-13 69.3
MsG0380017479.01.T01 AT4G09920 34.682 173 98 5 59 221 15 182 1.42e-13 69.3
MsG0380017479.01.T01 AT5G56560 33.974 156 96 4 70 221 30 182 1.44e-13 69.7
MsG0380017479.01.T01 AT4G10400 34.682 173 98 5 59 221 15 182 1.60e-13 69.7
MsG0380017479.01.T01 AT4G10400 34.682 173 98 5 59 221 15 182 1.60e-13 69.7
MsG0380017479.01.T01 AT4G10400 34.682 173 98 5 59 221 15 182 1.60e-13 69.7
MsG0380017479.01.T01 AT3G56780 34.118 170 99 6 59 221 20 183 1.80e-13 69.7
MsG0380017479.01.T01 AT3G56780 34.118 170 99 6 59 221 20 183 1.83e-13 69.7
MsG0380017479.01.T01 AT3G56780 34.118 170 99 6 59 221 20 183 2.04e-13 69.3
MsG0380017479.01.T01 AT4G14103 34.225 187 106 7 56 229 18 200 2.44e-13 68.9
MsG0380017479.01.T01 AT4G14103 34.225 187 106 7 56 229 18 200 2.44e-13 68.9
MsG0380017479.01.T01 AT5G62970 32.821 195 102 5 59 224 16 210 2.58e-13 68.9
MsG0380017479.01.T01 AT3G49150 31.111 180 102 7 58 221 28 201 2.93e-13 68.9
MsG0380017479.01.T01 AT5G56560 33.974 156 96 4 70 221 30 182 3.02e-13 68.9
MsG0380017479.01.T01 AT1G32375 37.209 172 99 7 58 221 14 184 3.77e-13 68.6
MsG0380017479.01.T01 AT1G32375 37.209 172 99 7 58 221 14 184 3.77e-13 68.6
MsG0380017479.01.T01 AT4G14103 35.196 179 99 7 56 221 18 192 3.90e-13 68.6
MsG0380017479.01.T01 AT1G60400 30.286 175 106 6 58 221 26 195 1.31e-12 67.0
MsG0380017479.01.T01 AT5G56820 33.133 166 106 4 59 222 28 190 1.35e-12 67.0
MsG0380017479.01.T01 AT5G53840 29.586 169 107 5 59 221 31 193 1.41e-12 67.0
MsG0380017479.01.T01 AT2G26860 32.184 174 107 4 58 221 14 186 1.50e-12 66.6
MsG0380017479.01.T01 AT2G26860 32.184 174 107 4 58 221 14 186 1.50e-12 66.6
MsG0380017479.01.T01 AT4G22280 32.402 179 94 6 58 221 14 180 1.73e-12 66.6
MsG0380017479.01.T01 AT4G22280 32.402 179 94 6 58 221 14 180 2.00e-12 66.2
MsG0380017479.01.T01 AT5G27750 32.065 184 98 8 58 221 17 193 2.77e-12 66.2
MsG0380017479.01.T01 AT5G56380 33.333 177 101 6 59 221 15 188 3.01e-12 65.9
MsG0380017479.01.T01 AT5G56380 33.333 177 101 6 59 221 15 188 3.01e-12 65.9
MsG0380017479.01.T01 AT5G27750 32.065 184 98 8 58 221 17 193 3.02e-12 65.9
MsG0380017479.01.T01 AT3G59170 28.922 204 100 6 58 221 19 217 3.98e-12 65.5
MsG0380017479.01.T01 AT5G22700 32.164 171 103 5 58 221 55 219 4.78e-12 65.5
MsG0380017479.01.T01 AT5G53635 29.240 171 113 3 58 222 12 180 5.65e-12 65.1
MsG0380017479.01.T01 AT5G56370 36.416 173 91 8 58 219 14 178 6.07e-12 64.7
MsG0380017479.01.T01 AT2G26030 31.395 172 104 8 58 220 16 182 6.28e-12 65.1
MsG0380017479.01.T01 AT2G04230 34.463 177 100 6 58 221 25 198 6.71e-12 65.1
MsG0380017479.01.T01 AT2G26030 31.395 172 104 8 58 220 16 182 6.72e-12 65.1
MsG0380017479.01.T01 AT2G26030 31.395 172 104 8 58 220 16 182 6.72e-12 65.1
MsG0380017479.01.T01 AT5G56370 36.416 173 91 8 58 219 14 178 6.76e-12 64.7
MsG0380017479.01.T01 AT5G56370 36.416 173 91 8 58 219 14 178 6.76e-12 64.7
MsG0380017479.01.T01 AT3G58980 30.556 180 101 7 58 221 14 185 6.86e-12 65.1
MsG0380017479.01.T01 AT4G00160 32.948 173 102 7 59 221 29 197 8.46e-12 64.7
MsG0380017479.01.T01 AT5G22700 32.164 171 103 5 58 221 55 219 8.66e-12 64.7
MsG0380017479.01.T01 AT4G26350 35.519 183 86 8 58 222 14 182 9.45e-12 64.3
MsG0380017479.01.T01 AT5G56410 33.158 190 102 7 59 224 16 204 9.78e-12 64.7
MsG0380017479.01.T01 AT5G22700 32.164 171 103 5 58 221 18 182 1.10e-11 64.3
MsG0380017479.01.T01 AT5G22700 32.164 171 103 5 58 221 18 182 1.10e-11 64.3
MsG0380017479.01.T01 AT5G22700 32.164 171 103 5 58 221 18 182 1.10e-11 64.3
MsG0380017479.01.T01 AT5G22700 32.164 171 103 5 58 221 18 182 1.10e-11 64.3
MsG0380017479.01.T01 AT5G38396 32.086 187 98 9 58 221 14 194 2.22e-11 63.5
MsG0380017479.01.T01 AT2G27505 29.016 193 108 9 59 225 5 194 2.84e-11 62.4
MsG0380017479.01.T01 AT5G41630 32.609 184 102 7 58 221 24 205 3.26e-11 62.8
MsG0380017479.01.T01 AT4G13960 31.868 182 99 7 57 221 13 186 3.76e-11 62.8
MsG0380017479.01.T01 AT4G13960 31.868 182 99 7 57 221 13 186 3.76e-11 62.8
MsG0380017479.01.T01 AT3G52680 33.333 186 114 8 43 221 19 201 4.08e-11 62.4
MsG0380017479.01.T01 AT3G52680 33.333 186 114 8 43 221 19 201 5.02e-11 62.4
MsG0380017479.01.T01 AT3G59160 28.500 200 104 7 58 221 25 221 8.38e-11 61.6
MsG0380017479.01.T01 AT1G66310 31.395 172 104 4 58 221 31 196 8.89e-11 61.6

Find 54 sgRNAs with CRISPR-Local

Find 60 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTAAGGAAGCAGCATTTA+AGG 0.174365 3:+96725616 None:intergenic
GGTCAGAACAATTTAGAATT+TGG 0.207684 3:+96725949 None:intergenic
AATCATGGATATCTCTATTA+AGG 0.282362 3:+96725601 None:intergenic
CTGCCCGATTCTACAAGATT+TGG 0.303965 3:-96725340 MsG0380017479.01.T01:CDS
GAAAGAAGGCAATGTCATTA+TGG 0.342640 3:+96725512 None:intergenic
GATGACGGAGTTGACGAAAT+TGG 0.343341 3:+96725677 None:intergenic
AGTGAGGGAAGATAAAAGTA+TGG 0.357796 3:+96725429 None:intergenic
ATGTGATCCTATTCAATTTG+AGG 0.357895 3:+96725463 None:intergenic
GCACTGATTCTGTCTTCGTT+TGG 0.361924 3:+96725854 None:intergenic
GTTTCCAAATCTTGTAGAAT+CGG 0.392226 3:+96725336 None:intergenic
AGACAGAATCAGTGCTTTGC+CGG 0.434920 3:-96725846 MsG0380017479.01.T01:CDS
CAAAGAGGTGGAAACCACTT+TGG 0.435868 3:-96725758 MsG0380017479.01.T01:CDS
CTGACCTTTCACTACTAAGT+AGG 0.439743 3:-96725932 MsG0380017479.01.T01:CDS
TGTCAGTCCTCAAATTGAAT+AGG 0.442286 3:-96725470 MsG0380017479.01.T01:CDS
TGCGGCGGTTGCCACATTGT+GGG 0.465426 3:+96725887 None:intergenic
ACCATTGATCTCTGCAGCTC+AGG 0.476611 3:-96725540 MsG0380017479.01.T01:CDS
CAGCAGTATAAAGAAAATCA+TGG 0.487309 3:+96725586 None:intergenic
CTGCGGCGGTTGCCACATTG+TGG 0.492359 3:+96725886 None:intergenic
AAAGGTTAAAGCATCTTGAA+AGG 0.505671 3:+96725701 None:intergenic
TTTCCAAATCTTGTAGAATC+GGG 0.506877 3:+96725337 None:intergenic
TTTATCTCGATTGGCGATGA+CGG 0.517075 3:+96725662 None:intergenic
GGAGTTGACGAAATTGGAAA+AGG 0.525123 3:+96725683 None:intergenic
AAGGTTAAAGCATCTTGAAA+GGG 0.528752 3:+96725702 None:intergenic
AACATGATAAGAAGTGAGTC+CGG 0.538322 3:+96725827 None:intergenic
ACCGTCTTTAGTAGTAAGAA+AGG 0.540028 3:+96725800 None:intergenic
TCCTTTCTTACTACTAAAGA+CGG 0.541546 3:-96725801 MsG0380017479.01.T01:CDS
GCGGCGGTTGCCACATTGTG+GGG 0.543886 3:+96725888 None:intergenic
GGTAGAACGAGCGGATAGGT+AGG 0.548861 3:+96725637 None:intergenic
TTAGTACTAAGAATGAAAGA+AGG 0.554730 3:+96725498 None:intergenic
TTAAAGCATCTTGAAAGGGT+TGG 0.558935 3:+96725706 None:intergenic
TAAACCTACTTAGTAGTGAA+AGG 0.563405 3:+96725928 None:intergenic
TCCTGAGCTGCAGAGATCAA+TGG 0.565910 3:+96725539 None:intergenic
TGGATCTCACAACTCATCCT+CGG 0.566070 3:-96725738 MsG0380017479.01.T01:CDS
GTGGTTTCCACCTCTTTGAG+AGG 0.572014 3:+96725763 None:intergenic
CCTCTTTGAGAGGATGCTTG+TGG 0.583063 3:+96725773 None:intergenic
GTGAGGGAAGATAAAAGTAT+GGG 0.588932 3:+96725430 None:intergenic
GCGGTTGCCACATTGTGGGG+AGG 0.594537 3:+96725891 None:intergenic
CAAGTGAAGGACTTTGAGTG+AGG 0.599328 3:+96725413 None:intergenic
CAAGCATCCTCTCAAAGAGG+TGG 0.599850 3:-96725770 MsG0380017479.01.T01:CDS
ATTTGACGATATTCAAGTGA+AGG 0.602805 3:+96725400 None:intergenic
ATTCAATTTGAGGACTGACA+AGG 0.605964 3:+96725473 None:intergenic
CACCGTATTCAAAAGAAGAG+AGG 0.610166 3:-96725293 MsG0380017479.01.T01:CDS
AAGTGAAGGACTTTGAGTGA+GGG 0.613143 3:+96725414 None:intergenic
TTAAGGTAGAACGAGCGGAT+AGG 0.621354 3:+96725633 None:intergenic
GTAGAACGAGCGGATAGGTA+GGG 0.622418 3:+96725638 None:intergenic
AGGGTTGGTCATCGAAGCCG+AGG 0.625274 3:+96725721 None:intergenic
TCGTTTGGAATTGAAAGCTG+CGG 0.641587 3:+96725869 None:intergenic
AGCATTTAAGGTAGAACGAG+CGG 0.643373 3:+96725628 None:intergenic
TTTGGAATTGAAAGCTGCGG+CGG 0.646991 3:+96725872 None:intergenic
AGCTGCAGAGATCAATGGTG+AGG 0.648655 3:+96725544 None:intergenic
CTTTGAGAGGATGCTTGTGG+CGG 0.648682 3:+96725776 None:intergenic
ATGAGTTGTGAGATCCAAAG+TGG 0.652509 3:+96725744 None:intergenic
CCACAAGCATCCTCTCAAAG+AGG 0.656620 3:-96725773 MsG0380017479.01.T01:CDS
TTGCAATCCTCCCCACAATG+TGG 0.746119 3:-96725898 MsG0380017479.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGGATATACACTTAAAAATT+CGG + Chr3:96725954-96725973 None:intergenic 20.0%
! AATCATGGATATCTCTATTA+AGG + Chr3:96725667-96725686 None:intergenic 25.0%
! TTAGTACTAAGAATGAAAGA+AGG + Chr3:96725770-96725789 None:intergenic 25.0%
ATGTGATCCTATTCAATTTG+AGG + Chr3:96725805-96725824 None:intergenic 30.0%
ATTTGACGATATTCAAGTGA+AGG + Chr3:96725868-96725887 None:intergenic 30.0%
CAGCAGTATAAAGAAAATCA+TGG + Chr3:96725682-96725701 None:intergenic 30.0%
CTTTATACTGCTGTAAAAAG+CGG - Chr3:96725689-96725708 MsG0380017479.01.T01:CDS 30.0%
GTTTCCAAATCTTGTAGAAT+CGG + Chr3:96725932-96725951 None:intergenic 30.0%
TAAACCTACTTAGTAGTGAA+AGG + Chr3:96725340-96725359 None:intergenic 30.0%
TATTAAGGAAGCAGCATTTA+AGG + Chr3:96725652-96725671 None:intergenic 30.0%
TCCTTTCTTACTACTAAAGA+CGG - Chr3:96725464-96725483 MsG0380017479.01.T01:CDS 30.0%
TTTCCAAATCTTGTAGAATC+GGG + Chr3:96725931-96725950 None:intergenic 30.0%
! AAAGGTTAAAGCATCTTGAA+AGG + Chr3:96725567-96725586 None:intergenic 30.0%
! AAGGTTAAAGCATCTTGAAA+GGG + Chr3:96725566-96725585 None:intergenic 30.0%
! GGTCAGAACAATTTAGAATT+TGG + Chr3:96725319-96725338 None:intergenic 30.0%
! TATCTCTTGAAGCTTTTATC+TGG - Chr3:96725902-96725921 MsG0380017479.01.T01:CDS 30.0%
! TTCCTCTCTTCTTTTGAATA+CGG + Chr3:96725977-96725996 None:intergenic 30.0%
AACATGATAAGAAGTGAGTC+CGG + Chr3:96725441-96725460 None:intergenic 35.0%
ACCGTCTTTAGTAGTAAGAA+AGG + Chr3:96725468-96725487 None:intergenic 35.0%
AGTGAGGGAAGATAAAAGTA+TGG + Chr3:96725839-96725858 None:intergenic 35.0%
ATTCAATTTGAGGACTGACA+AGG + Chr3:96725795-96725814 None:intergenic 35.0%
GAAAGAAGGCAATGTCATTA+TGG + Chr3:96725756-96725775 None:intergenic 35.0%
TGTCAGTCCTCAAATTGAAT+AGG - Chr3:96725795-96725814 MsG0380017479.01.T01:CDS 35.0%
! GTGAGGGAAGATAAAAGTAT+GGG + Chr3:96725838-96725857 None:intergenic 35.0%
! TTAAAGCATCTTGAAAGGGT+TGG + Chr3:96725562-96725581 None:intergenic 35.0%
AAGTGAAGGACTTTGAGTGA+GGG + Chr3:96725854-96725873 None:intergenic 40.0%
ATGAGTTGTGAGATCCAAAG+TGG + Chr3:96725524-96725543 None:intergenic 40.0%
CACCGTATTCAAAAGAAGAG+AGG - Chr3:96725972-96725991 MsG0380017479.01.T01:CDS 40.0%
CTGACCTTTCACTACTAAGT+AGG - Chr3:96725333-96725352 MsG0380017479.01.T01:CDS 40.0%
GGAGTTGACGAAATTGGAAA+AGG + Chr3:96725585-96725604 None:intergenic 40.0%
TTTATCTCGATTGGCGATGA+CGG + Chr3:96725606-96725625 None:intergenic 40.0%
! AGCATTTAAGGTAGAACGAG+CGG + Chr3:96725640-96725659 None:intergenic 40.0%
! CTCTCTTCTTTTGAATACGG+TGG + Chr3:96725974-96725993 None:intergenic 40.0%
! TCGTTTGGAATTGAAAGCTG+CGG + Chr3:96725399-96725418 None:intergenic 40.0%
!! AGGTAGGGTTTTATCTCGAT+TGG + Chr3:96725615-96725634 None:intergenic 40.0%
AGACAGAATCAGTGCTTTGC+CGG - Chr3:96725419-96725438 MsG0380017479.01.T01:CDS 45.0%
CAAAGAGGTGGAAACCACTT+TGG - Chr3:96725507-96725526 MsG0380017479.01.T01:CDS 45.0%
CAAGTGAAGGACTTTGAGTG+AGG + Chr3:96725855-96725874 None:intergenic 45.0%
CTGCCCGATTCTACAAGATT+TGG - Chr3:96725925-96725944 MsG0380017479.01.T01:CDS 45.0%
TGGATCTCACAACTCATCCT+CGG - Chr3:96725527-96725546 MsG0380017479.01.T01:CDS 45.0%
TTAAGGTAGAACGAGCGGAT+AGG + Chr3:96725635-96725654 None:intergenic 45.0%
! TTTGGAATTGAAAGCTGCGG+CGG + Chr3:96725396-96725415 None:intergenic 45.0%
!! GATGACGGAGTTGACGAAAT+TGG + Chr3:96725591-96725610 None:intergenic 45.0%
!! GCACTGATTCTGTCTTCGTT+TGG + Chr3:96725414-96725433 None:intergenic 45.0%
ACCATTGATCTCTGCAGCTC+AGG - Chr3:96725725-96725744 MsG0380017479.01.T01:CDS 50.0%
AGCTGCAGAGATCAATGGTG+AGG + Chr3:96725724-96725743 None:intergenic 50.0%
CAAGCATCCTCTCAAAGAGG+TGG - Chr3:96725495-96725514 MsG0380017479.01.T01:CDS 50.0%
CCACAAGCATCCTCTCAAAG+AGG - Chr3:96725492-96725511 MsG0380017479.01.T01:CDS 50.0%
GTAGAACGAGCGGATAGGTA+GGG + Chr3:96725630-96725649 None:intergenic 50.0%
GTGGTTTCCACCTCTTTGAG+AGG + Chr3:96725505-96725524 None:intergenic 50.0%
TCCTGAGCTGCAGAGATCAA+TGG + Chr3:96725729-96725748 None:intergenic 50.0%
TTGCAATCCTCCCCACAATG+TGG - Chr3:96725367-96725386 MsG0380017479.01.T01:CDS 50.0%
! CCTCTTTGAGAGGATGCTTG+TGG + Chr3:96725495-96725514 None:intergenic 50.0%
! CTTTGAGAGGATGCTTGTGG+CGG + Chr3:96725492-96725511 None:intergenic 50.0%
GGTAGAACGAGCGGATAGGT+AGG + Chr3:96725631-96725650 None:intergenic 55.0%
TGCGGCGGTTGCCACATTGT+GGG + Chr3:96725381-96725400 None:intergenic 60.0%
!! AGGGTTGGTCATCGAAGCCG+AGG + Chr3:96725547-96725566 None:intergenic 60.0%
CTGCGGCGGTTGCCACATTG+TGG + Chr3:96725382-96725401 None:intergenic 65.0%
GCGGCGGTTGCCACATTGTG+GGG + Chr3:96725380-96725399 None:intergenic 65.0%
GCGGTTGCCACATTGTGGGG+AGG + Chr3:96725377-96725396 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 96725284 96726003 96725284 ID=MsG0380017479.01;Name=MsG0380017479.01
Chr3 mRNA 96725284 96726003 96725284 ID=MsG0380017479.01.T01;Parent=MsG0380017479.01;Name=MsG0380017479.01.T01;_AED=0.50;_eAED=0.51;_QI=0|-1|0|1|-1|0|1|0|239
Chr3 exon 96725284 96726003 96725284 ID=MsG0380017479.01.T01:exon:27127;Parent=MsG0380017479.01.T01
Chr3 CDS 96725284 96726003 96725284 ID=MsG0380017479.01.T01:cds;Parent=MsG0380017479.01.T01
Chr3 mRNA 96725706 96725831 96725706 ID=MsG0380017479.01.T02;Parent=MsG0380017479.01;Name=MsG0380017479.01.T02;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|0|1|0|41
Chr3 exon 96725706 96725831 96725706 ID=MsG0380017479.01.T02:exon:27128;Parent=MsG0380017479.01.T02
Chr3 CDS 96725706 96725831 96725706 ID=MsG0380017479.01.T02:cds;Parent=MsG0380017479.01.T02
Gene Sequence

>MsG0380017479.01.T01

ATGCATGTCTGTGTGTGTATATATGCGAGACACCAAATTCTAAATTGTTCTGACCTTTCACTACTAAGTAGGTTTAACTTGTGTTGCAATCCTCCCCACAATGTGGCAACCGCCGCAGCTTTCAATTCCAAACGAAGACAGAATCAGTGCTTTGCCGGACTCACTTCTTATCATGTTCTTTCCTTTCTTACTACTAAAGACGGTGCCGCCACAAGCATCCTCTCAAAGAGGTGGAAACCACTTTGGATCTCACAACTCATCCTCGGCTTCGATGACCAACCCTTTCAAGATGCTTTAACCTTTTCCAATTTCGTCAACTCCGTCATCGCCAATCGAGATAAAACCCTACCTATCCGCTCGTTCTACCTTAAATGCTGCTTCCTTAATAGAGATATCCATGATTTTCTTTATACTGCTGTAAAAAGCGGAGTTGAAAACCTCACCATTGATCTCTGCAGCTCAGGATACTCCATAATGACATTGCCTTCTTTCATTCTTAGTACTAAAACCTTGTCAGTCCTCAAATTGAATAGGATCACATTGAATGAAATCCCATACTTTTATCTTCCCTCACTCAAAGTCCTTCACTTGAATATCGTCAAATTCAGATATTATGAATATCTCTTGAAGCTTTTATCTGGCTGCCCGATTCTACAAGATTTGGAAACCGAATTTTTAAGTGTATATCCACCGTATTCAAAAGAAGAGAGGAAATTATAA

>MsG0380017479.01.T02

ATGTTCTTTCCTTTCTTACTACTAAAGACGGTGCCGCCACAAGCATCCTCTCAAAGAGGTGGAAACCACTTTGGATCTCACAACTCATCCTCGGCTTCGATGACCAACCCTTTCAAGATGCTTTAA
Protein sequence

>MsG0380017479.01.T01

MHVCVCIYARHQILNCSDLSLLSRFNLCCNPPHNVATAAAFNSKRRQNQCFAGLTSYHVLSFLTTKDGAATSILSKRWKPLWISQLILGFDDQPFQDALTFSNFVNSVIANRDKTLPIRSFYLKCCFLNRDIHDFLYTAVKSGVENLTIDLCSSGYSIMTLPSFILSTKTLSVLKLNRITLNEIPYFYLPSLKVLHLNIVKFRYYEYLLKLLSGCPILQDLETEFLSVYPPYSKEERKL*

>MsG0380017479.01.T02

MFFPFLLLKTVPPQASSQRGGNHFGSHNSSSASMTNPFKML*