AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880045177.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045177.01.T01 MTR_5g087830 50.000 126 49 1 271 382 8 133 2.71e-32 122
MsG0880045177.01.T01 MTR_2g016390 46.622 148 43 1 271 382 249 396 1.84e-30 123
MsG0880045177.01.T01 MTR_4g076760 45.098 153 43 2 271 382 270 422 1.06e-27 114
MsG0880045177.01.T01 MTR_0057s0040 52.586 116 31 2 271 362 8 123 8.96e-27 103
MsG0880045177.01.T01 MTR_5g032840 42.069 145 48 2 274 382 163 307 1.08e-26 110
MsG0880045177.01.T01 MTR_0296s0010 43.537 147 46 2 273 382 88 234 2.26e-23 99.8
MsG0880045177.01.T01 MTR_7g050355 42.484 153 52 2 266 382 406 558 1.08e-22 100
MsG0880045177.01.T01 MTR_8g022960 43.697 119 57 1 274 382 47 165 1.13e-21 94.0
MsG0880045177.01.T01 MTR_7g027013 50.909 110 38 2 273 382 518 611 5.28e-20 92.4
MsG0880045177.01.T01 MTR_1g057360 43.119 109 46 1 274 382 185 277 4.45e-19 88.2
MsG0880045177.01.T01 MTR_2g047010 40.179 112 45 2 266 376 54 144 1.65e-18 83.6
MsG0880045177.01.T01 MTR_3g085530 40.476 126 39 1 293 382 547 672 2.22e-18 87.4
MsG0880045177.01.T01 MTR_8g067020 90.476 42 4 0 20 61 2 43 2.33e-18 80.1
MsG0880045177.01.T01 MTR_6g024100 39.535 129 66 3 265 382 78 205 2.39e-18 84.0
MsG0880045177.01.T01 MTR_4g050743 40.179 112 45 2 266 376 54 144 1.28e-17 80.9
MsG0880045177.01.T01 MTR_4g062370 39.726 146 52 3 273 382 461 606 3.21e-17 84.0
MsG0880045177.01.T01 MTR_2g008505 55.385 65 29 0 318 382 197 261 8.30e-17 81.3
MsG0880045177.01.T01 MTR_7g070715 49.383 81 40 1 303 382 187 267 9.69e-17 81.3
MsG0880045177.01.T01 MTR_3g045160 61.111 54 21 0 329 382 4 57 1.20e-15 73.2
MsG0880045177.01.T01 MTR_1g045920 47.525 101 48 3 281 378 99 197 1.06e-14 73.9
MsG0880045177.01.T01 MTR_8g019090 44.340 106 55 2 273 378 10 111 1.57e-14 72.8
MsG0880045177.01.T01 MTR_7g110460 62.500 56 21 0 323 378 1 56 1.91e-14 72.0
MsG0880045177.01.T01 MTR_8g066920 60.000 75 21 3 36 107 1 69 4.81e-14 70.1
MsG0880045177.01.T01 MTR_4g078000 59.259 54 22 0 329 382 4 57 2.49e-13 69.7
MsG0880045177.01.T01 MTR_4g115110 55.000 60 27 0 323 382 1 60 4.31e-13 67.0
MsG0880045177.01.T01 MTR_5g071700 32.192 146 55 3 273 382 171 308 1.50e-12 68.9
MsG0880045177.01.T01 MTR_1g033220 33.333 156 51 5 265 382 78 218 3.89e-12 66.6
MsG0880045177.01.T01 MTR_7g108370 36.792 106 58 2 277 382 9 105 1.83e-11 62.8
MsG0880045177.01.T01 MTR_4g010800 56.000 50 22 0 333 382 6 55 2.07e-11 62.4
MsG0880045177.01.T01 MTR_0550s0010 37.383 107 62 2 281 382 79 185 4.92e-11 63.2
MsG0880045177.01.T01 MTR_8g015280 54.000 50 23 0 333 382 18 67 9.86e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 115 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCTGTTCCTAATGAAAA+AGG 0.221072 8:+55311388 MsG0880045177.01.T01:CDS
TATATGTTGGATTTGATTCT+AGG 0.238754 8:+55313898 MsG0880045177.01.T01:CDS
TCAATTGTGTTGAGAAATTC+AGG 0.271683 8:-55314000 None:intergenic
TCTTATTGGGTCTTGGGTAT+TGG 0.275912 8:+55313778 MsG0880045177.01.T01:CDS
GTAGGATCTGGTGGATTTCC+TGG 0.299465 8:+55311475 MsG0880045177.01.T01:CDS
CAACAGCCTGGAGGATTTCC+TGG 0.300756 8:+55311631 MsG0880045177.01.T01:CDS
AATTTGAGTTTGTGATTTGC+AGG 0.307586 8:-55314033 None:intergenic
AATCCTTCAGGTAGTCCTTT+AGG 0.308295 8:-55311787 None:intergenic
TGCCAATTTGCACTACTTCA+TGG 0.310582 8:+55311149 MsG0880045177.01.T01:CDS
GGACTGCCTGGAGGATTTCC+TGG 0.316635 8:+55311496 MsG0880045177.01.T01:CDS
CTCAACACAATTGATACTTT+TGG 0.320951 8:+55314009 MsG0880045177.01.T01:CDS
CATTGCTCTCTTTGTGCTGT+TGG 0.329983 8:+55311276 MsG0880045177.01.T01:CDS
AGACTGCCTGGAGGATTTCC+TGG 0.343541 8:+55311451 MsG0880045177.01.T01:CDS
TTCCTGAGACAGGTATTTAT+AGG 0.351071 8:-55311184 None:intergenic
ACAGGAAGGCTCCCACCTTC+AGG 0.352084 8:-55311373 None:intergenic
GTAGGATCTGGAGGATTTCC+TGG 0.353215 8:+55311655 MsG0880045177.01.T01:CDS
GGAGGATTTCCTGGACTGCC+TGG 0.354181 8:+55311721 MsG0880045177.01.T01:CDS
GTAGGATATGGTGGATTTCC+TGG 0.356132 8:+55311520 MsG0880045177.01.T01:CDS
GAACTTTCAAAGTTGCCATA+TGG 0.369580 8:-55311249 None:intergenic
GGACTGCCTGGAGGATTTCC+TGG 0.369954 8:+55311577 MsG0880045177.01.T01:CDS
CTTGATATAAGTAAATTAGA+TGG 0.372826 8:-55313850 None:intergenic
GACCATGAAGTAGTGCAAAT+TGG 0.372827 8:-55311151 None:intergenic
GGACAGCCTGGAGGATTTCC+TGG 0.377510 8:+55311712 MsG0880045177.01.T01:CDS
TGGGTCTTGGGTATTGGTGA+TGG 0.380703 8:+55313784 MsG0880045177.01.T01:CDS
ATTGCTCTCTTTGTGCTGTT+GGG 0.382762 8:+55311277 MsG0880045177.01.T01:CDS
AAACTGTCTGGTATAGTATC+TGG 0.388710 8:+55311856 MsG0880045177.01.T01:CDS
GGACTACCTGAAGGATTTCC+TGG 0.390640 8:+55311793 MsG0880045177.01.T01:CDS
TGGTGTAGGATCTAGAGGTT+TGG 0.391368 8:+55311813 MsG0880045177.01.T01:CDS
GGATTTCCTGGTGTAGGATC+TGG 0.393975 8:+55311643 MsG0880045177.01.T01:CDS
GGTGGATTTCCTGGACTGCC+TGG 0.395309 8:+55311484 MsG0880045177.01.T01:CDS
GGATTTCCTGGTGTAGGATA+TGG 0.410396 8:+55311508 MsG0880045177.01.T01:CDS
GGTTTATAGCCGTCTTGATC+AGG 0.411851 8:-55311352 None:intergenic
GGTGGATTTCCTGGACTGCC+TGG 0.413647 8:+55311529 MsG0880045177.01.T01:CDS
GGATTTCCTGGTGTAGGATC+TGG 0.436990 8:+55311463 MsG0880045177.01.T01:CDS
GGTGTAGGATCTAGAGGTTT+GGG 0.437013 8:+55311814 MsG0880045177.01.T01:CDS
TCTACTATAATAAAGACAAT+AGG 0.437032 8:-55313570 None:intergenic
TTGGGAGATGAAAAGATACT+TGG 0.441136 8:+55311832 MsG0880045177.01.T01:CDS
GGAGGATTTCCTGGACTACC+TGG 0.443457 8:+55311664 MsG0880045177.01.T01:CDS
TCAAATAAACAGTTATATGT+TGG 0.445882 8:+55313885 MsG0880045177.01.T01:CDS
GGGTCTTGGGTATTGGTGAT+GGG 0.452448 8:+55313785 MsG0880045177.01.T01:CDS
GGTATTGGTGATGGGACAAT+TGG 0.453217 8:+55313793 MsG0880045177.01.T01:CDS
CCTACACCAGGAAATCCTTC+AGG 0.459539 8:-55311799 None:intergenic
AAGATACTTGGAAAACTGTC+TGG 0.461384 8:+55311844 MsG0880045177.01.T01:CDS
GGAGGATTTCCTAGACTGCC+TGG 0.462654 8:+55311439 MsG0880045177.01.T01:CDS
CACAAACTCAAATTAAAAGT+TGG 0.464012 8:+55314042 MsG0880045177.01.T01:CDS
TTCCTATAAATACCTGTCTC+AGG 0.473928 8:+55311182 MsG0880045177.01.T01:CDS
CTGGAGGATTTCCTAGTGTA+GGG 0.489822 8:+55311548 MsG0880045177.01.T01:CDS
GAATCAAACAAAATTCCATA+TGG 0.490488 8:+55311234 MsG0880045177.01.T01:CDS
CTTCACCTGGTTGGTACACC+AGG 0.491546 8:-55311886 None:intergenic
GTAGGGTCTAGAGGACTGCC+TGG 0.495231 8:+55311565 MsG0880045177.01.T01:CDS
CCAGGCTGTTGAAATCCTCC+AGG 0.506982 8:-55311619 None:intergenic
AATCCACCAGATCCTACATC+AGG 0.518041 8:-55311751 None:intergenic
GGTTTCAAGATTCCTGAGAC+AGG 0.519155 8:-55311194 None:intergenic
GAGTCTCAGCGATGTTCTAA+AGG 0.523198 8:+55314064 MsG0880045177.01.T01:CDS
GGATTTCCTGATGTAGGATC+TGG 0.525334 8:+55311745 MsG0880045177.01.T01:CDS
CCTGGAGGATTTCAACAGCC+TGG 0.528326 8:+55311619 MsG0880045177.01.T01:CDS
TTTCCTGGTGTAGGATCTAG+AGG 0.531302 8:+55311808 MsG0880045177.01.T01:CDS
TGTCCTCTAGATCCTACATC+AGG 0.534868 8:-55311694 None:intergenic
GGAAATCCTCCAGGCAGTCC+AGG 0.537055 8:-55311493 None:intergenic
GGAAATCCTCCAGGCAGTCC+AGG 0.537055 8:-55311730 None:intergenic
CCTGGAGGATTTCCTAGTGT+AGG 0.538910 8:+55311547 MsG0880045177.01.T01:CDS
GGAAATCCTCCAGGTAGTCC+AGG 0.538987 8:-55311673 None:intergenic
GGAAATCCTCCAGGCAGTCC+AGG 0.545859 8:-55311538 None:intergenic
TTTCCTGATGTAGGATCTGG+TGG 0.546339 8:+55311748 MsG0880045177.01.T01:CDS
GGCAGTCCAGGAAATCCTCC+AGG 0.549642 8:-55311718 None:intergenic
TTTCCTGGTGTAGGATCTGG+TGG 0.550376 8:+55311466 MsG0880045177.01.T01:CDS
GGAAATCCTCCAGGCAGTCT+AGG 0.552421 8:-55311448 None:intergenic
GTAGGATCTAGAGGACAGCC+TGG 0.555583 8:+55311700 MsG0880045177.01.T01:CDS
TACTGCCTGGTGTACCAACC+AGG 0.555639 8:+55311881 MsG0880045177.01.T01:CDS
ATAGTATCTGGAGTACTGCC+TGG 0.560914 8:+55311868 MsG0880045177.01.T01:CDS
GTAGGATCTAGAGGACAGCC+TGG 0.567286 8:+55311601 MsG0880045177.01.T01:CDS
CCTGGAGGATTTCCTGGTGT+AGG 0.569135 8:+55311457 MsG0880045177.01.T01:CDS
CCTGGAGGATTTCCTGGTGT+AGG 0.569135 8:+55311583 MsG0880045177.01.T01:CDS
TTTCCTGGTGTAGGATATGG+TGG 0.571845 8:+55311511 MsG0880045177.01.T01:CDS
TGATAGACCCGTACATCACA+TGG 0.572478 8:+55313536 MsG0880045177.01.T01:intron
ATTCTTACACAACTGAGTTG+TGG 0.574804 8:-55311215 None:intergenic
TTTCCTGATGTAGGATCTAG+AGG 0.576832 8:+55311691 MsG0880045177.01.T01:CDS
CCTGGAGGATTTCCTGATGT+AGG 0.578499 8:+55311739 MsG0880045177.01.T01:CDS
TTTCCTAGTGTAGGGTCTAG+AGG 0.583221 8:+55311556 MsG0880045177.01.T01:CDS
CCTACACCAGGAAATCCTCC+AGG 0.591190 8:-55311637 None:intergenic
TTTCCTGGTGTAGGATCTAG+AGG 0.592608 8:+55311592 MsG0880045177.01.T01:CDS
CCTACATCAGGAAATCCTCC+AGG 0.594335 8:-55311682 None:intergenic
CCTGGAGGATTTCCTGATGT+AGG 0.594745 8:+55311682 MsG0880045177.01.T01:CDS
TTTCCTGGTGTAGGATCTGG+AGG 0.596162 8:+55311646 MsG0880045177.01.T01:CDS
CCAAACCTCCTTCACCTGGT+TGG 0.598208 8:-55311895 None:intergenic
AATCCTCCAGATCCTACACC+AGG 0.600292 8:-55311649 None:intergenic
GGATTTCCTGGACTGCCTGG+AGG 0.604851 8:+55311724 MsG0880045177.01.T01:CDS
CCTACACCAGGAAATCCTCC+AGG 0.605765 8:-55311457 None:intergenic
CCTACACCAGGAAATCCTCC+AGG 0.605765 8:-55311502 None:intergenic
CCTACACCAGGAAATCCTCC+AGG 0.605765 8:-55311583 None:intergenic
CCTACATCAGGAAATCCTCC+AGG 0.606734 8:-55311739 None:intergenic
GACGGCTATAAACCTGAAGG+TGG 0.607744 8:+55311361 MsG0880045177.01.T01:CDS
CCTGGAGGATTTCCTGGTGT+AGG 0.610793 8:+55311502 MsG0880045177.01.T01:CDS
CCTGGAGGATTTCCTGGTGT+AGG 0.612965 8:+55311637 MsG0880045177.01.T01:CDS
GGATTTCCTGGACTGCCTGG+AGG 0.614082 8:+55311487 MsG0880045177.01.T01:CDS
GGATTTCCTGGACTGCCTGG+AGG 0.614082 8:+55311532 MsG0880045177.01.T01:CDS
TGTTGAGAAATTCAGGAGTG+TGG 0.616404 8:-55313993 None:intergenic
TGTCCTCTAGATCCTACACC+AGG 0.624714 8:-55311595 None:intergenic
AATCCACCAGATCCTACACC+AGG 0.625031 8:-55311469 None:intergenic
CCTGAAGGATTTCCTGGTGT+AGG 0.627039 8:+55311799 MsG0880045177.01.T01:CDS
CTTCCTAAAGGACTACCTGA+AGG 0.635827 8:+55311784 MsG0880045177.01.T01:CDS
AAACCTCTAGATCCTACACC+AGG 0.638088 8:-55311811 None:intergenic
GATTCTGATCCTGATCAAGA+CGG 0.650207 8:+55311343 MsG0880045177.01.T01:CDS
CAAGACGGCTATAAACCTGA+AGG 0.666768 8:+55311358 MsG0880045177.01.T01:CDS
GGAGGATTTCAACAGCCTGG+AGG 0.668853 8:+55311622 MsG0880045177.01.T01:CDS
AATCCACCATATCCTACACC+AGG 0.669415 8:-55311514 None:intergenic
CCTACACTAGGAAATCCTCC+AGG 0.669583 8:-55311547 None:intergenic
AGTCCTCTAGACCCTACACT+AGG 0.670297 8:-55311559 None:intergenic
GGATTTCCTGGACTACCTGG+AGG 0.671330 8:+55311667 MsG0880045177.01.T01:CDS
ACGGCTATAAACCTGAAGGT+GGG 0.673639 8:+55311362 MsG0880045177.01.T01:CDS
GATAGACCCGTACATCACAT+GGG 0.691932 8:+55313537 MsG0880045177.01.T01:intron
GGGTCTAGAGGACTGCCTGG+AGG 0.693753 8:+55311568 MsG0880045177.01.T01:CDS
GGATCTAGAGGACAGCCTGG+AGG 0.718203 8:+55311604 MsG0880045177.01.T01:CDS
GGATCTAGAGGACAGCCTGG+AGG 0.718203 8:+55311703 MsG0880045177.01.T01:CDS
GGATTTCCTAGACTGCCTGG+AGG 0.743827 8:+55311442 MsG0880045177.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG - Chr8:55312661-55312642 None:intergenic 0.0%
!! TGTGTATATATATATATATA+GGG + Chr8:55312638-55312657 MsG0880045177.01.T01:intron 10.0%
!! AAAATATCACACTAAAAAAA+AGG - Chr8:55313489-55313508 None:intergenic 15.0%
!! AAAGAAATTACAAAAATGAA+AGG - Chr8:55312208-55312227 None:intergenic 15.0%
!! ATTTATGAAGATATCATTAT+AGG - Chr8:55312000-55312019 None:intergenic 15.0%
!! GTGTGTATATATATATATAT+AGG + Chr8:55312745-55312764 MsG0880045177.01.T01:intron 15.0%
!! TATATTCTACAGAATATATA+TGG - Chr8:55312051-55312070 None:intergenic 15.0%
!!! AAAGAAAATTGTTTTCTTAT+TGG + Chr8:55313764-55313783 MsG0880045177.01.T01:CDS 15.0%
!!! AAGAAAATTGTTTTCTTATT+GGG + Chr8:55313765-55313784 MsG0880045177.01.T01:CDS 15.0%
!!! ATTTTTGTAATTTCTTTTTG+TGG + Chr8:55312211-55312230 MsG0880045177.01.T01:intron 15.0%
!!! CCATTTTTTTAAAATCTTAT+AGG - Chr8:55312359-55312378 None:intergenic 15.0%
!!! CCTATAAGATTTTAAAAAAA+TGG + Chr8:55312356-55312375 MsG0880045177.01.T01:intron 15.0%
!!! TAAATGCTTTTTTCAAATTT+TGG + Chr8:55313071-55313090 MsG0880045177.01.T01:intron 15.0%
!! AAAAACATAAGACTTCTAAA+TGG + Chr8:55313718-55313737 MsG0880045177.01.T01:intron 20.0%
!! ATAAGTTAAGTAGCTTAAAA+TGG + Chr8:55312794-55312813 MsG0880045177.01.T01:intron 20.0%
!! CTTGATATAAGTAAATTAGA+TGG - Chr8:55313853-55313872 None:intergenic 20.0%
!! GAATATATATGGTTATTAGT+AGG - Chr8:55312040-55312059 None:intergenic 20.0%
!! TAAGAATGAAAACAAATGAA+GGG + Chr8:55312273-55312292 MsG0880045177.01.T01:intron 20.0%
!! TATTAATTCTTCGTATCTTT+GGG + Chr8:55313668-55313687 MsG0880045177.01.T01:intron 20.0%
!! TCAAATAAACAGTTATATGT+TGG + Chr8:55313885-55313904 MsG0880045177.01.T01:CDS 20.0%
!! TCTACTATAATAAAGACAAT+AGG - Chr8:55313573-55313592 None:intergenic 20.0%
!! TTTGACAAAAGAAATTAATG+AGG - Chr8:55313133-55313152 None:intergenic 20.0%
!!! TTTGAAAAAAGCATTTAATG+AGG - Chr8:55313068-55313087 None:intergenic 20.0%
! CACAAACTCAAATTAAAAGT+TGG + Chr8:55314042-55314061 MsG0880045177.01.T01:CDS 25.0%
! CTATTAATTCTTCGTATCTT+TGG + Chr8:55313667-55313686 MsG0880045177.01.T01:intron 25.0%
! GAATCAAACAAAATTCCATA+TGG + Chr8:55311234-55311253 MsG0880045177.01.T01:CDS 25.0%
! GAATCATTAAGTTAAGTAGT+TGG - Chr8:55313214-55313233 None:intergenic 25.0%
! GGTTAAAATTAACATTCTTC+TGG - Chr8:55312338-55312357 None:intergenic 25.0%
! GTAAGAATGAAAACAAATGA+AGG + Chr8:55312272-55312291 MsG0880045177.01.T01:intron 25.0%
! TACGAAGAATTAATAGTAGA+AGG - Chr8:55313663-55313682 None:intergenic 25.0%
! TATATGTTGGATTTGATTCT+AGG + Chr8:55313898-55313917 MsG0880045177.01.T01:CDS 25.0%
! TGAAAGGAAATATAATCGTT+CGG - Chr8:55312192-55312211 None:intergenic 25.0%
!! TTATAGTATGTCTGAAACTT+TGG + Chr8:55313450-55313469 MsG0880045177.01.T01:intron 25.0%
!!! GTAGCTGATTTTTTTTTGAA+AGG + Chr8:55313379-55313398 MsG0880045177.01.T01:intron 25.0%
AACTTATTAAATGCGTCGTA+CGG - Chr8:55313602-55313621 None:intergenic 30.0%
AAGAATAAGATCCTGTTGTA+AGG + Chr8:55312076-55312095 MsG0880045177.01.T01:intron 30.0%
AATGGAAGTGATAGTAATGA+TGG + Chr8:55311948-55311967 MsG0880045177.01.T01:intron 30.0%
ATTATAAGCATCCTTACAAC+AGG - Chr8:55312090-55312109 None:intergenic 30.0%
CATGCAATGATCTTGAAAAT+AGG + Chr8:55313307-55313326 MsG0880045177.01.T01:intron 30.0%
GTTCCTAATGAAAAAGGATT+TGG + Chr8:55311394-55311413 MsG0880045177.01.T01:CDS 30.0%
TCAATTGTGTTGAGAAATTC+AGG - Chr8:55314003-55314022 None:intergenic 30.0%
! AATTTGAGTTTGTGATTTGC+AGG - Chr8:55314036-55314055 None:intergenic 30.0%
! ATTGTTTTCTTATTGGGTCT+TGG + Chr8:55313771-55313790 MsG0880045177.01.T01:CDS 30.0%
! CTCAACACAATTGATACTTT+TGG + Chr8:55314009-55314028 MsG0880045177.01.T01:CDS 30.0%
! TTGTTTTCTTATTGGGTCTT+GGG + Chr8:55313772-55313791 MsG0880045177.01.T01:CDS 30.0%
!! AATCCTTTTTCATTAGGAAC+AGG - Chr8:55311394-55311413 None:intergenic 30.0%
!! GTATCTTTGGGAAATTTTTG+AGG + Chr8:55313680-55313699 MsG0880045177.01.T01:intron 30.0%
!! TTCTTCTGGAACAATTTCTA+CGG - Chr8:55312324-55312343 None:intergenic 30.0%
!! TTTTGAAAGGAATTTGTAGC+TGG + Chr8:55313392-55313411 MsG0880045177.01.T01:intron 30.0%
!!! AAAGGATTTGGAGGATTTTT+TGG + Chr8:55311406-55311425 MsG0880045177.01.T01:CDS 30.0%
AAACTGTCTGGTATAGTATC+TGG + Chr8:55311856-55311875 MsG0880045177.01.T01:CDS 35.0%
AAGATACTTGGAAAACTGTC+TGG + Chr8:55311844-55311863 MsG0880045177.01.T01:CDS 35.0%
AAGGAAATATAATCGTTCGG+TGG - Chr8:55312189-55312208 None:intergenic 35.0%
ACTTATTAAATGCGTCGTAC+GGG - Chr8:55313601-55313620 None:intergenic 35.0%
ATTCTTACACAACTGAGTTG+TGG - Chr8:55311218-55311237 None:intergenic 35.0%
CCTAATGAAAAAGGATTTGG+AGG + Chr8:55311397-55311416 MsG0880045177.01.T01:CDS 35.0%
CTTCCTGTTCCTAATGAAAA+AGG + Chr8:55311388-55311407 MsG0880045177.01.T01:CDS 35.0%
GAACTTTCAAAGTTGCCATA+TGG - Chr8:55311252-55311271 None:intergenic 35.0%
GGAATTTGTAGCTGGTTATA+TGG + Chr8:55313400-55313419 MsG0880045177.01.T01:intron 35.0%
GGTATGCATGAGAAAACAAA+GGG - Chr8:55313247-55313266 None:intergenic 35.0%
TCATCTATATATAGAGAGCC+AGG - Chr8:55313281-55313300 None:intergenic 35.0%
TTCCTATAAATACCTGTCTC+AGG + Chr8:55311182-55311201 MsG0880045177.01.T01:CDS 35.0%
TTCCTGAGACAGGTATTTAT+AGG - Chr8:55311187-55311206 None:intergenic 35.0%
TTGGGAGATGAAAAGATACT+TGG + Chr8:55311832-55311851 MsG0880045177.01.T01:CDS 35.0%
! TTTTTGACCCATGTGATGTA+CGG - Chr8:55313547-55313566 None:intergenic 35.0%
!! AAAATGTTAACTTGTGCCCT+TGG - Chr8:55312928-55312947 None:intergenic 35.0%
!! AAATGTTAACTTGTGCCCTT+GGG - Chr8:55312927-55312946 None:intergenic 35.0%
!! CCTCCAAATCCTTTTTCATT+AGG - Chr8:55311400-55311419 None:intergenic 35.0%
!! CTTTTTCATTAGGAACAGGA+AGG - Chr8:55311390-55311409 None:intergenic 35.0%
!!! GGATTTTTTGGTGTAGGATT+TGG + Chr8:55311418-55311437 MsG0880045177.01.T01:CDS 35.0%
!!! TTTGGAGGATTTTTTGGTGT+AGG + Chr8:55311412-55311431 MsG0880045177.01.T01:CDS 35.0%
!!! TTTTTTGGTGTAGGATTTGG+AGG + Chr8:55311421-55311440 MsG0880045177.01.T01:CDS 35.0%
AATCCTTCAGGTAGTCCTTT+AGG - Chr8:55311790-55311809 None:intergenic 40.0%
AATGATGGCATTGTACCTGA+TGG + Chr8:55311963-55311982 MsG0880045177.01.T01:intron 40.0%
CAAAAGCTTGCAACACACAT+AGG - Chr8:55313107-55313126 None:intergenic 40.0%
CGGTATGCATGAGAAAACAA+AGG - Chr8:55313248-55313267 None:intergenic 40.0%
CTACTTAACTTATGCCCCAA+GGG - Chr8:55312787-55312806 None:intergenic 40.0%
CTGGTTATATGGTATACGCA+AGG + Chr8:55313411-55313430 MsG0880045177.01.T01:intron 40.0%
CTTCTTAACTTATGCCCCAA+GGG + Chr8:55312909-55312928 MsG0880045177.01.T01:intron 40.0%
GACCATGAAGTAGTGCAAAT+TGG - Chr8:55311154-55311173 None:intergenic 40.0%
GAGAGCCAGGATCATTATTT+CGG - Chr8:55313268-55313287 None:intergenic 40.0%
GATCATCGAGCATCAACATA+AGG + Chr8:55312401-55312420 MsG0880045177.01.T01:intron 40.0%
GATTCTGATCCTGATCAAGA+CGG + Chr8:55311343-55311362 MsG0880045177.01.T01:CDS 40.0%
GCATACCGAAATAATGATCC+TGG + Chr8:55313260-55313279 MsG0880045177.01.T01:intron 40.0%
TAGTGATGACATGTGCATGT+AGG - Chr8:55313177-55313196 None:intergenic 40.0%
TCTTATTGGGTCTTGGGTAT+TGG + Chr8:55313778-55313797 MsG0880045177.01.T01:CDS 40.0%
TCTTCTTAACTTATGCCCCA+AGG + Chr8:55312908-55312927 MsG0880045177.01.T01:intron 40.0%
TGCCAATTTGCACTACTTCA+TGG + Chr8:55311149-55311168 MsG0880045177.01.T01:CDS 40.0%
TGTTGAGAAATTCAGGAGTG+TGG - Chr8:55313996-55314015 None:intergenic 40.0%
TTCCATTATAGCCTCCTTCA+CGG - Chr8:55311935-55311954 None:intergenic 40.0%
TTTCCTGATGTAGGATCTAG+AGG + Chr8:55311691-55311710 MsG0880045177.01.T01:CDS 40.0%
! ATTGCTCTCTTTGTGCTGTT+GGG + Chr8:55311277-55311296 MsG0880045177.01.T01:CDS 40.0%
! CTATGTGTGTTGCAAGCTTT+TGG + Chr8:55313105-55313124 MsG0880045177.01.T01:intron 40.0%
! TTTTGACCCATGTGATGTAC+GGG - Chr8:55313546-55313565 None:intergenic 40.0%
!! AATGTTAACTTGTGCCCTTG+GGG - Chr8:55312926-55312945 None:intergenic 40.0%
!! CCATCCATTTTTCGTGAAAG+CGG - Chr8:55313955-55313974 None:intergenic 40.0%
!! TCATGTTAACTTGTGCCCTT+GGG + Chr8:55312769-55312788 MsG0880045177.01.T01:intron 40.0%
!! TTTGCCGCTTTCACGAAAAA+TGG + Chr8:55313948-55313967 MsG0880045177.01.T01:CDS 40.0%
!! TTTTCTGGAGGACTTCCTAA+AGG + Chr8:55311772-55311791 MsG0880045177.01.T01:CDS 40.0%
AAACCTCTAGATCCTACACC+AGG - Chr8:55311814-55311833 None:intergenic 45.0%
AATCCACCAGATCCTACATC+AGG - Chr8:55311754-55311773 None:intergenic 45.0%
AATCCACCATATCCTACACC+AGG - Chr8:55311517-55311536 None:intergenic 45.0%
ACGGCTATAAACCTGAAGGT+GGG + Chr8:55311362-55311381 MsG0880045177.01.T01:CDS 45.0%
CAAGACGGCTATAAACCTGA+AGG + Chr8:55311358-55311377 MsG0880045177.01.T01:CDS 45.0%
CATTGCTCTCTTTGTGCTGT+TGG + Chr8:55311276-55311295 MsG0880045177.01.T01:CDS 45.0%
CCGCTTTCACGAAAAATGGA+TGG + Chr8:55313952-55313971 MsG0880045177.01.T01:CDS 45.0%
CTGGAGGATTTCCTAGTGTA+GGG + Chr8:55311548-55311567 MsG0880045177.01.T01:CDS 45.0%
CTTCCTAAAGGACTACCTGA+AGG + Chr8:55311784-55311803 MsG0880045177.01.T01:CDS 45.0%
GATAGACCCGTACATCACAT+GGG + Chr8:55313537-55313556 MsG0880045177.01.T01:intron 45.0%
GATGACATGTGCATGTAGGA+GGG - Chr8:55313173-55313192 None:intergenic 45.0%
GCTACTTAACTTATGCCCCA+AGG - Chr8:55312788-55312807 None:intergenic 45.0%
GGATTTCCTGATGTAGGATC+TGG + Chr8:55311688-55311707 MsG0880045177.01.T01:CDS 45.0%
GGATTTCCTGGTGTAGGATA+TGG + Chr8:55311508-55311527 MsG0880045177.01.T01:CDS 45.0%
GGTGTAGGATCTAGAGGTTT+GGG + Chr8:55311814-55311833 MsG0880045177.01.T01:CDS 45.0%
GGTTTATAGCCGTCTTGATC+AGG - Chr8:55311355-55311374 None:intergenic 45.0%
GGTTTCAAGATTCCTGAGAC+AGG - Chr8:55311197-55311216 None:intergenic 45.0%
TAGGCTTAGTGATGACCATC+AGG - Chr8:55311981-55312000 None:intergenic 45.0%
TGATAGACCCGTACATCACA+TGG + Chr8:55313536-55313555 MsG0880045177.01.T01:intron 45.0%
TGATGACATGTGCATGTAGG+AGG - Chr8:55313174-55313193 None:intergenic 45.0%
TGGTGTAGGATCTAGAGGTT+TGG + Chr8:55311813-55311832 MsG0880045177.01.T01:CDS 45.0%
TGTCCTCTAGATCCTACATC+AGG - Chr8:55311697-55311716 None:intergenic 45.0%
TTTCCTAGTGTAGGGTCTAG+AGG + Chr8:55311556-55311575 MsG0880045177.01.T01:CDS 45.0%
TTTCCTGATGTAGGATCTGG+TGG + Chr8:55311748-55311767 MsG0880045177.01.T01:CDS 45.0%
TTTCCTGGTGTAGGATATGG+TGG + Chr8:55311511-55311530 MsG0880045177.01.T01:CDS 45.0%
TTTCCTGGTGTAGGATCTAG+AGG + Chr8:55311592-55311611 MsG0880045177.01.T01:CDS 45.0%
! ACGTGTGTGTTGCAAGCTTT+TGG + Chr8:55313040-55313059 MsG0880045177.01.T01:intron 45.0%
!! ATAGTATCTGGAGTACTGCC+TGG + Chr8:55311868-55311887 MsG0880045177.01.T01:CDS 45.0%
!! CATGTTAACTTGTGCCCTTG+GGG + Chr8:55312770-55312789 MsG0880045177.01.T01:intron 45.0%
!! GGTATTGGTGATGGGACAAT+TGG + Chr8:55313793-55313812 MsG0880045177.01.T01:CDS 45.0%
!! GTAGGATATGGTGGATTTCC+TGG + Chr8:55311520-55311539 MsG0880045177.01.T01:CDS 45.0%
!! GTCATGTTAACTTGTGCCCT+TGG + Chr8:55312768-55312787 MsG0880045177.01.T01:intron 45.0%
!!! GTAGGATCTGGTGGATTTTC+TGG + Chr8:55311757-55311776 MsG0880045177.01.T01:CDS 45.0%
AATCCACCAGATCCTACACC+AGG - Chr8:55311472-55311491 None:intergenic 50.0%
AATCCTCCAGATCCTACACC+AGG - Chr8:55311652-55311671 None:intergenic 50.0%
AGTCCTCTAGACCCTACACT+AGG - Chr8:55311562-55311581 None:intergenic 50.0%
CAACCAGGTGAAGGAGGTTT+GGG + Chr8:55311896-55311915 MsG0880045177.01.T01:intron 50.0%
CCTACACCAGGAAATCCTTC+AGG - Chr8:55311802-55311821 None:intergenic 50.0%
CCTACACTAGGAAATCCTCC+AGG - Chr8:55311550-55311569 None:intergenic 50.0%
CCTACATCAGGAAATCCTCC+AGG - Chr8:55311685-55311704 None:intergenic 50.0%
CCTGAAGGATTTCCTGGTGT+AGG + Chr8:55311799-55311818 MsG0880045177.01.T01:CDS 50.0%
CCTGGAGGATTTCCTAGTGT+AGG + Chr8:55311547-55311566 MsG0880045177.01.T01:CDS 50.0%
CCTGGAGGATTTCCTGATGT+AGG + Chr8:55311682-55311701 MsG0880045177.01.T01:CDS 50.0%
GACGGCTATAAACCTGAAGG+TGG + Chr8:55311361-55311380 MsG0880045177.01.T01:CDS 50.0%
GGACTACCTGAAGGATTTCC+TGG + Chr8:55311793-55311812 MsG0880045177.01.T01:CDS 50.0%
GGATTTCCTGGTGTAGGATC+TGG + Chr8:55311463-55311482 MsG0880045177.01.T01:CDS 50.0%
GTAGGATCTGGAGGATTTCC+TGG + Chr8:55311655-55311674 MsG0880045177.01.T01:CDS 50.0%
TGCCGTGAAGGAGGCTATAA+TGG + Chr8:55311930-55311949 MsG0880045177.01.T01:intron 50.0%
TGTCCTCTAGATCCTACACC+AGG - Chr8:55311598-55311617 None:intergenic 50.0%
TTTCCTGGTGTAGGATCTGG+AGG + Chr8:55311466-55311485 MsG0880045177.01.T01:CDS 50.0%
TTTCCTGGTGTAGGATCTGG+TGG + Chr8:55311466-55311485 MsG0880045177.01.T01:CDS 50.0%
!! GGGTCTTGGGTATTGGTGAT+GGG + Chr8:55313785-55313804 MsG0880045177.01.T01:CDS 50.0%
!! GTAGGATCTGGTGGATTTCC+TGG + Chr8:55311475-55311494 MsG0880045177.01.T01:CDS 50.0%
!! TGGGTCTTGGGTATTGGTGA+TGG + Chr8:55313784-55313803 MsG0880045177.01.T01:CDS 50.0%
!!! GGATCTGGTGGATTTTCTGG+AGG + Chr8:55311760-55311779 MsG0880045177.01.T01:CDS 50.0%
AGACTGCCTGGAGGATTTCC+TGG + Chr8:55311451-55311470 MsG0880045177.01.T01:CDS 55.0%
CAACAGCCTGGAGGATTTCC+TGG + Chr8:55311631-55311650 MsG0880045177.01.T01:CDS 55.0%
CCAAACCTCCTTCACCTGGT+TGG - Chr8:55311898-55311917 None:intergenic 55.0%
CCAACCAGGTGAAGGAGGTT+TGG + Chr8:55311895-55311914 MsG0880045177.01.T01:intron 55.0%
CCAGGCTGTTGAAATCCTCC+AGG - Chr8:55311622-55311641 None:intergenic 55.0%
CCTACACCAGGAAATCCTCC+AGG - Chr8:55311460-55311479 None:intergenic 55.0%
CCTGGAGGATTTCAACAGCC+TGG + Chr8:55311619-55311638 MsG0880045177.01.T01:CDS 55.0%
CCTGGAGGATTTCCTGGTGT+AGG + Chr8:55311457-55311476 MsG0880045177.01.T01:CDS 55.0%
CTGGTGTACCAACCAGGTGA+AGG + Chr8:55311887-55311906 MsG0880045177.01.T01:intron 55.0%
GGAAATCCTCCAGGCAGTCT+AGG - Chr8:55311451-55311470 None:intergenic 55.0%
GGAAATCCTCCAGGTAGTCC+AGG - Chr8:55311676-55311695 None:intergenic 55.0%
GGAGGATTTCAACAGCCTGG+AGG + Chr8:55311622-55311641 MsG0880045177.01.T01:CDS 55.0%
GGAGGATTTCCTAGACTGCC+TGG + Chr8:55311439-55311458 MsG0880045177.01.T01:CDS 55.0%
GGAGGATTTCCTGGACTACC+TGG + Chr8:55311664-55311683 MsG0880045177.01.T01:CDS 55.0%
GGATTTCCTAGACTGCCTGG+AGG + Chr8:55311442-55311461 MsG0880045177.01.T01:CDS 55.0%
GGATTTCCTGGACTACCTGG+AGG + Chr8:55311667-55311686 MsG0880045177.01.T01:CDS 55.0%
GGTGAAGGAGGTTTGGGTGA+TGG + Chr8:55311902-55311921 MsG0880045177.01.T01:intron 55.0%
GTAGGATCTAGAGGACAGCC+TGG + Chr8:55311601-55311620 MsG0880045177.01.T01:CDS 55.0%
GTGTACCAACCAGGTGAAGG+AGG + Chr8:55311890-55311909 MsG0880045177.01.T01:intron 55.0%
TACTGCCTGGTGTACCAACC+AGG + Chr8:55311881-55311900 MsG0880045177.01.T01:CDS 55.0%
TCACCCAAACCTCCTTCACC+TGG - Chr8:55311902-55311921 None:intergenic 55.0%
! CTTCACCTGGTTGGTACACC+AGG - Chr8:55311889-55311908 None:intergenic 55.0%
! GAAGGAGGTTTGGGTGATGG+AGG + Chr8:55311905-55311924 MsG0880045177.01.T01:intron 55.0%
ACAGGAAGGCTCCCACCTTC+AGG - Chr8:55311376-55311395 None:intergenic 60.0%
ATGGAGGACTGCCGTGAAGG+AGG + Chr8:55311921-55311940 MsG0880045177.01.T01:intron 60.0%
GGAAATCCTCCAGGCAGTCC+AGG - Chr8:55311496-55311515 None:intergenic 60.0%
GGACAGCCTGGAGGATTTCC+TGG + Chr8:55311712-55311731 MsG0880045177.01.T01:CDS 60.0%
GGACTGCCTGGAGGATTTCC+TGG + Chr8:55311496-55311515 MsG0880045177.01.T01:CDS 60.0%
GGAGGATTTCCTGGACTGCC+TGG + Chr8:55311721-55311740 MsG0880045177.01.T01:CDS 60.0%
GGATCTAGAGGACAGCCTGG+AGG + Chr8:55311604-55311623 MsG0880045177.01.T01:CDS 60.0%
GGATTTCCTGGACTGCCTGG+AGG + Chr8:55311487-55311506 MsG0880045177.01.T01:CDS 60.0%
GGCAGTCCAGGAAATCCTCC+AGG - Chr8:55311721-55311740 None:intergenic 60.0%
GTAGGGTCTAGAGGACTGCC+TGG + Chr8:55311565-55311584 MsG0880045177.01.T01:CDS 60.0%
! GGTGGATTTCCTGGACTGCC+TGG + Chr8:55311484-55311503 MsG0880045177.01.T01:CDS 60.0%
! GTGATGGAGGACTGCCGTGA+AGG + Chr8:55311918-55311937 MsG0880045177.01.T01:intron 60.0%
GGGTCTAGAGGACTGCCTGG+AGG + Chr8:55311568-55311587 MsG0880045177.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 55311148 55314083 55311148 ID=MsG0880045177.01;Name=MsG0880045177.01
Chr8 mRNA 55311148 55314083 55311148 ID=MsG0880045177.01.T01;Parent=MsG0880045177.01;Name=MsG0880045177.01.T01;_AED=0.48;_eAED=0.60;_QI=0|0|0|0.66|1|1|3|0|382
Chr8 exon 55311148 55311902 55311148 ID=MsG0880045177.01.T01:exon:23858;Parent=MsG0880045177.01.T01
Chr8 exon 55313542 55313600 55313542 ID=MsG0880045177.01.T01:exon:23859;Parent=MsG0880045177.01.T01
Chr8 exon 55313749 55314083 55313749 ID=MsG0880045177.01.T01:exon:23860;Parent=MsG0880045177.01.T01
Chr8 CDS 55311148 55311902 55311148 ID=MsG0880045177.01.T01:cds;Parent=MsG0880045177.01.T01
Chr8 CDS 55313542 55313600 55313542 ID=MsG0880045177.01.T01:cds;Parent=MsG0880045177.01.T01
Chr8 CDS 55313749 55314083 55313749 ID=MsG0880045177.01.T01:cds;Parent=MsG0880045177.01.T01
Gene Sequence

>MsG0880045177.01.T01

ATGCCAATTTGCACTACTTCATGGTCTAGTTTCATTCCTATAAATACCTGTCTCAGGAATCTTGAAACCACAACTCAGTTGTGTAAGAATCAAACAAAATTCCATATGGCAACTTTGAAAGTTCTAAGCATTGCTCTCTTTGTGCTGTTGGGTTTAAGCATGTGTTCTGCTACTAGAAAACTCTATGACAATCGTGATTCTGATCCTGATCAAGACGGCTATAAACCTGAAGGTGGGAGCCTTCCTGTTCCTAATGAAAAAGGATTTGGAGGATTTTTTGGTGTAGGATTTGGAGGATTTCCTAGACTGCCTGGAGGATTTCCTGGTGTAGGATCTGGTGGATTTCCTGGACTGCCTGGAGGATTTCCTGGTGTAGGATATGGTGGATTTCCTGGACTGCCTGGAGGATTTCCTAGTGTAGGGTCTAGAGGACTGCCTGGAGGATTTCCTGGTGTAGGATCTAGAGGACAGCCTGGAGGATTTCAACAGCCTGGAGGATTTCCTGGTGTAGGATCTGGAGGATTTCCTGGACTACCTGGAGGATTTCCTGATGTAGGATCTAGAGGACAGCCTGGAGGATTTCCTGGACTGCCTGGAGGATTTCCTGATGTAGGATCTGGTGGATTTTCTGGAGGACTTCCTAAAGGACTACCTGAAGGATTTCCTGGTGTAGGATCTAGAGGTTTGGGAGATGAAAAGATACTTGGAAAACTGTCTGGTATAGTATCTGGAGTACTGCCTGGTGTACCAACCAGACCCGTACATCACATGGGTCAAAAATTACCTATTGTCTTTATTATAGTAGATAAGACCCATTCAGATATTTTAGAAAGAAAATTGTTTTCTTATTGGGTCTTGGGTATTGGTGATGGGACAATTGGCGAAAGCAATGATGTTGATATATCACTTGATATTCCATCTAATTTACTTATATCAAGTAATGACTTATATCAAATAAACAGTTATATGTTGGATTTGATTCTAGGTGAAGCAAAACTTTATTTGAGTCATGATTTGCCGCTTTCACGAAAAATGGATGGTGATGCGATTGATAATGTCCACACTCCTGAATTTCTCAACACAATTGATACTTTTGGTCCTGCAAATCACAAACTCAAATTAAAAGTTGGAGTCTCAGCGATGTTCTAA
Protein sequence

>MsG0880045177.01.T01

MPICTTSWSSFIPINTCLRNLETTTQLCKNQTKFHMATLKVLSIALFVLLGLSMCSATRKLYDNRDSDPDQDGYKPEGGSLPVPNEKGFGGFFGVGFGGFPRLPGGFPGVGSGGFPGLPGGFPGVGYGGFPGLPGGFPSVGSRGLPGGFPGVGSRGQPGGFQQPGGFPGVGSGGFPGLPGGFPDVGSRGQPGGFPGLPGGFPDVGSGGFSGGLPKGLPEGFPGVGSRGLGDEKILGKLSGIVSGVLPGVPTRPVHHMGQKLPIVFIIVDKTHSDILERKLFSYWVLGIGDGTIGESNDVDISLDIPSNLLISSNDLYQINSYMLDLILGEAKLYLSHDLPLSRKMDGDAIDNVHTPEFLNTIDTFGPANHKLKLKVGVSAMF*