AlfalfaGEDB | MsG0480024022.01

M. sativa cultivar ZhongmuNo.1 / MsG0480024022.01

KEGG: -
GO: GO:0003677
PFAM: PF00046

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480024022.01.T01	AEL30895.1	96.094	384	6	5	1	376	1	383	0	752

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480024022.01.T01	Q6X7K0	36.881	404	173	14	1	376	1	350	1.77E-62	206

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048357.01	MsG0480024022.01	0.900840	4.897903e-78	6.441728e-74
MsG0180000036.01	MsG0480024022.01	0.830980	2.163421e-55	2.316063e-52
MsG0180000404.01	MsG0480024022.01	0.836083	1.151867e-56	1.436255e-53
MsG0180000632.01	MsG0480024022.01	0.817668	2.926552e-52	2.144749e-49
MsG0180000782.01	MsG0480024022.01	0.800338	1.510173e-48	7.014205e-46
MsG0180000994.01	MsG0480024022.01	0.804826	1.792573e-49	9.336173e-47
MsG0180001200.01	MsG0480024022.01	0.832732	7.991570e-56	9.011081e-53
MsG0180001771.01	MsG0480024022.01	0.856652	2.783767e-62	6.691066e-59
MsG0180003741.01	MsG0480024022.01	0.886224	4.119448e-72	2.917081e-68
MsG0180005113.01	MsG0480024022.01	0.854683	1.045627e-61	2.354184e-58
MsG0180005153.01	MsG0480024022.01	0.818786	1.634697e-52	1.235429e-49
MsG0180005540.01	MsG0480024022.01	0.828865	7.090174e-55	7.134603e-52
MsG0380011496.01	MsG0480024022.01	0.853490	2.308361e-61	4.996473e-58
MsG0380011501.01	MsG0480024022.01	0.841625	4.241721e-58	6.269271e-55
MsG0380011675.01	MsG0480024022.01	0.809302	2.023175e-50	1.183593e-47
MsG0480018909.01	MsG0480024022.01	0.844741	6.265334e-59	1.021259e-55
MsG0480019279.01	MsG0480024022.01	0.809916	1.493375e-50	8.879777e-48
MsG0480020096.01	MsG0480024022.01	0.838361	3.009573e-57	4.021555e-54
MsG0480020517.01	MsG0480024022.01	0.803942	2.739283e-49	1.394606e-46
MsG0480021894.01	MsG0480024022.01	0.802301	5.987207e-49	2.922752e-46
MsG0480024022.01	MsG0580024966.01	0.811434	7.014374e-51	4.341615e-48
MsG0480024022.01	MsG0580025449.01	0.801317	9.533910e-49	4.539171e-46
MsG0480024022.01	MsG0580025466.01	0.835239	1.884365e-56	2.290739e-53
MsG0480024022.01	MsG0580025973.01	0.827723	1.336536e-54	1.301050e-51
MsG0480024022.01	MsG0580025974.01	0.840804	6.975081e-58	1.004936e-54
MsG0480024022.01	MsG0580027925.01	0.831008	2.128606e-55	2.280691e-52
MsG0480024022.01	MsG0580028960.01	0.816739	4.735365e-52	3.383074e-49
MsG0480024022.01	MsG0580029310.01	0.864142	1.504358e-64	4.673915e-61
MsG0480024022.01	MsG0580029406.01	0.800532	1.378768e-48	6.435216e-46
MsG0480024022.01	MsG0580029417.01	0.819506	1.120551e-52	8.639589e-50
MsG0480024022.01	MsG0580029418.01	0.858515	7.815343e-63	1.999739e-59
MsG0480024022.01	MsG0580029736.01	0.803154	3.992198e-49	1.991605e-46
MsG0480024022.01	MsG0680030328.01	0.848523	5.804132e-60	1.068173e-56
MsG0480024022.01	MsG0680030329.01	0.803020	4.253624e-49	2.114640e-46
MsG0480024022.01	MsG0680030784.01	0.804146	2.484483e-49	1.271446e-46
MsG0480024022.01	MsG0680031342.01	0.816672	4.900744e-52	3.494893e-49
MsG0480024022.01	MsG0680031365.01	0.807965	3.905251e-50	2.205238e-47
MsG0480024022.01	MsG0680031428.01	0.812149	4.903044e-51	3.093276e-48
MsG0480024022.01	MsG0680031621.01	0.800310	1.530374e-48	7.103115e-46
MsG0480024022.01	MsG0680031707.01	0.866278	3.205060e-65	1.074174e-61
MsG0480024022.01	MsG0680031959.01	0.876339	1.510281e-68	7.295127e-65
MsG0480024022.01	MsG0680034835.01	0.818594	1.806474e-52	1.358013e-49
MsG0480024022.01	MsG0680035658.01	0.801175	1.019110e-48	4.834811e-46
MsG0480024022.01	MsG0680035683.01	0.838101	3.513068e-57	4.656833e-54
MsG0480024022.01	MsG0780036148.01	0.816388	5.675496e-52	4.016027e-49
MsG0480024022.01	MsG0780037420.01	0.822397	2.420682e-53	2.023914e-50
MsG0480024022.01	MsG0780037492.01	0.814981	1.168029e-51	7.952972e-49
MsG0480024022.01	MsG0780040286.01	0.817648	2.956652e-52	2.165601e-49
MsG0480024022.01	MsG0780040287.01	0.816055	6.734552e-52	4.722560e-49
MsG0480024022.01	MsG0780040430.01	0.827091	1.894851e-54	1.810845e-51
MsG0480024022.01	MsG0780040431.01	0.815654	8.274163e-52	5.738827e-49
MsG0480024022.01	MsG0780040846.01	0.891679	3.187810e-74	2.823221e-70
MsG0480024022.01	MsG0780040966.01	0.852443	4.601125e-61	9.615680e-58
MsG0480024022.01	MsG0780041259.01	0.865708	4.852361e-65	1.594055e-61
MsG0480024022.01	MsG0780041698.01	0.857542	1.520105e-62	3.765109e-59
MsG0480024022.01	MsG0780041699.01	0.817774	2.769828e-52	2.035853e-49
MsG0480024022.01	MsG0880041834.01	0.823192	1.580909e-53	1.351808e-50
MsG0480024022.01	MsG0880041858.01	0.867574	1.237489e-65	4.341749e-62
MsG0480024022.01	MsG0880042442.01	0.818717	1.694815e-52	1.278405e-49
MsG0480024022.01	MsG0880042733.01	0.819513	1.116391e-52	8.609171e-50
MsG0480024022.01	MsG0880042958.01	0.838297	3.126892e-57	4.169676e-54
MsG0480024022.01	MsG0880042959.01	0.817306	3.530222e-52	2.561569e-49
MsG0480024022.01	MsG0880043037.01	0.809662	1.694033e-50	1.000595e-47
MsG0480024022.01	MsG0880044704.01	0.819393	1.189236e-52	9.139602e-50
MsG0480024022.01	MsG0880045177.01	0.800753	1.242948e-48	5.833866e-46
MsG0480024022.01	MsG0880045585.01	0.866726	2.309228e-65	7.863105e-62
MsG0480024022.01	MsG0880045586.01	0.844124	9.182842e-59	1.468008e-55
MsG0480024022.01	MsG0880046942.01	0.807623	4.618378e-50	2.584699e-47
MsG0380015786.01	MsG0480024022.01	0.805288	1.435384e-49	7.564605e-47
MsG0380016465.01	MsG0480024022.01	0.828384	9.266472e-55	9.196259e-52
MsG0480018200.01	MsG0480024022.01	0.810490	1.123133e-50	6.779437e-48
MsG0280006592.01	MsG0480024022.01	0.800549	1.367821e-48	6.386879e-46
MsG0280006966.01	MsG0480024022.01	0.833283	5.828750e-56	6.681389e-53
MsG0280006967.01	MsG0480024022.01	0.831928	1.263712e-55	1.391574e-52
MsG0280007305.01	MsG0480024022.01	0.826831	2.186187e-54	2.073386e-51
MsG0280007506.01	MsG0480024022.01	0.817402	3.360264e-52	2.444738e-49
MsG0280007515.01	MsG0480024022.01	0.819242	1.287411e-52	9.853197e-50
MsG0280007750.01	MsG0480024022.01	0.802246	6.146175e-49	2.996054e-46
MsG0280007884.01	MsG0480024022.01	0.812146	4.910803e-51	3.097889e-48
MsG0280008390.01	MsG0480024022.01	0.855003	8.445160e-62	1.921719e-58
MsG0280008391.01	MsG0480024022.01	0.864447	1.207899e-64	3.794111e-61
MsG0280008392.01	MsG0480024022.01	0.869675	2.591817e-66	9.808977e-63
MsG0280008395.01	MsG0480024022.01	0.868751	5.174345e-66	1.893425e-62
MsG0280008397.01	MsG0480024022.01	0.827618	1.416168e-54	1.374179e-51
MsG0280008899.01	MsG0480024022.01	0.832704	8.119078e-56	9.147421e-53
MsG0280010320.01	MsG0480024022.01	0.848511	5.849704e-60	1.076140e-56

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480024022.01.T01	MTR_8g107210	86.719	384	17	9	1	376	1	358	0.0	630
MsG0480024022.01.T01	MTR_8g095580	82.390	159	9	5	1	153	1	146	1.18e-83	252
MsG0480024022.01.T01	MTR_3g088485	82.166	157	11	3	1	153	1	144	8.61e-83	249
MsG0480024022.01.T01	MTR_4g084550	50.641	156	61	4	42	190	26	172	6.64e-38	135
MsG0480024022.01.T01	MTR_7g060630	74.627	67	17	0	87	153	6	72	3.03e-28	110
MsG0480024022.01.T01	MTR_1g019130	75.000	64	16	0	88	151	89	152	2.13e-27	108
MsG0480024022.01.T01	MTR_4g063735	63.636	77	26	1	89	165	25	99	7.03e-27	107
MsG0480024022.01.T01	MTR_1g019130	75.000	64	16	0	88	151	89	152	1.13e-26	106
MsG0480024022.01.T01	MTR_5g081990	71.429	63	18	0	89	151	33	95	6.75e-26	103
MsG0480024022.01.T01	MTR_5g021930	70.769	65	18	1	87	150	28	92	2.99e-25	104
MsG0480024022.01.T01	MTR_7g025010	50.000	62	31	0	89	150	47	108	1.31e-15	78.6
MsG0480024022.01.T01	MTR_2g015000	50.000	62	31	0	89	150	55	116	1.89e-15	77.8
MsG0480024022.01.T01	MTR_7g023810	36.170	94	60	0	89	182	68	161	3.29e-14	70.9
MsG0480024022.01.T01	MTR_4g088070	45.902	61	33	0	89	149	29	89	6.67e-14	73.2
MsG0480024022.01.T01	MTR_1g115315	39.506	81	47	1	89	167	85	165	9.49e-13	68.2
MsG0480024022.01.T01	MTR_1g115315	39.506	81	47	1	89	167	85	165	1.21e-12	67.8
MsG0480024022.01.T01	MTR_4g088080	44.262	61	34	0	89	149	40	100	2.89e-12	67.4
MsG0480024022.01.T01	MTR_3g115620	42.623	61	35	0	89	149	82	142	3.65e-11	62.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480024022.01.T01	AT3G18010	36.881	404	173	14	1	376	1	350	1.80e-63	206
MsG0480024022.01.T01	AT2G01500	55.263	114	38	4	32	143	13	115	2.77e-29	114
MsG0480024022.01.T01	AT2G28610	71.014	69	20	0	85	153	4	72	8.32e-29	112
MsG0480024022.01.T01	AT5G59340	61.905	84	30	1	82	165	7	88	4.95e-28	111
MsG0480024022.01.T01	AT3G11260	52.000	100	42	2	78	177	13	106	1.94e-26	104
MsG0480024022.01.T01	AT1G46480	70.769	65	19	0	87	151	88	152	2.19e-26	104
MsG0480024022.01.T01	AT1G46480	70.769	65	19	0	87	151	88	152	1.66e-25	103
MsG0480024022.01.T01	AT2G17950	69.697	66	19	1	86	150	35	100	1.11e-24	102
MsG0480024022.01.T01	AT5G05770	59.459	74	28	1	87	160	27	98	1.69e-23	94.7
MsG0480024022.01.T01	AT5G45980	35.000	120	69	2	89	208	55	165	1.30e-16	80.5
MsG0480024022.01.T01	AT2G33880	50.000	62	31	0	89	150	55	116	4.37e-15	76.3
MsG0480024022.01.T01	AT2G33880	50.000	62	31	0	89	150	55	116	4.53e-15	76.3
MsG0480024022.01.T01	AT4G35550	47.541	61	32	0	89	149	99	159	4.88e-13	68.9
MsG0480024022.01.T01	AT1G20700	33.684	95	59	1	89	179	33	127	1.57e-11	62.4
MsG0480024022.01.T01	AT1G20700	33.684	95	59	1	89	179	95	189	3.32e-11	62.8
MsG0480024022.01.T01	AT1G20700	33.684	95	59	1	89	179	95	189	3.71e-11	62.8
MsG0480024022.01.T01	AT3G03660	42.029	69	40	0	72	140	16	84	3.88e-11	63.5
MsG0480024022.01.T01	AT3G03660	42.029	69	40	0	72	140	16	84	5.34e-11	63.5
MsG0480024022.01.T01	AT3G03660	42.029	69	40	0	72	140	16	84	6.79e-11	63.2
MsG0480024022.01.T01	AT5G17810	45.455	55	30	0	86	140	18	72	7.72e-11	62.8
MsG0480024022.01.T01	AT5G17810	45.455	55	30	0	86	140	18	72	8.32e-11	62.4
MsG0480024022.01.T01	AT5G17810	45.455	55	30	0	86	140	18	72	8.32e-11	62.4
MsG0480024022.01.T01	AT3G03660	42.029	69	40	0	72	140	16	84	8.55e-11	63.2

Find 78 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCATGATCTCCATTCCTTAT+TGG	0.159741	4:+92442736	None:intergenic
ACAGCAAAGAAGAAACTTTA+TGG	0.180399	4:-92443034	MsG0480024022.01.T01:CDS
GCCACCATGAATGCGGTTTA+AGG	0.200513	4:+92444619	None:intergenic
TCCAGTGCTCTTAACTGTTC+TGG	0.231980	4:+92444369	None:intergenic
TCTCTGTCTCTTTGTGTTGC+TGG	0.237936	4:+92442677	None:intergenic
CATGATCTCCATTCCTTATT+GGG	0.239327	4:+92442737	None:intergenic
ACTGCCCAGCTTAGAAAGTT+TGG	0.297339	4:-92444291	MsG0480024022.01.T01:CDS
GTAATTCTGCTTCATCGAAT+TGG	0.317991	4:+92443055	None:intergenic
GTTATAGTTGAAGTGTTGTT+AGG	0.318974	4:+92444644	None:intergenic
CACAGTAACAACTAGACTTA+TGG	0.319387	4:-92442914	MsG0480024022.01.T01:CDS
TAAGCTGGGCAGTGATTTGT+TGG	0.366393	4:+92444301	None:intergenic
GTGTTGTTAGGAGAAGTAGT+AGG	0.385300	4:+92444656	None:intergenic
TGTAGTTGATACTGTTTAAG+TGG	0.389042	4:+92442803	None:intergenic
CCACCATGAATGCGGTTTAA+GGG	0.392129	4:+92444620	None:intergenic
TTGCAGTAGAGGTGTTTAAG+AGG	0.415990	4:+92442962	None:intergenic
GCTCTTAACTGTTCTGGTGT+TGG	0.418756	4:+92444375	None:intergenic
ACGGAAGAAACTCAATAAAC+TGG	0.421182	4:+92442626	None:intergenic
GCTCTTGAAAAGAAAGACTT+AGG	0.434053	4:-92444165	MsG0480024022.01.T01:intron
AAATGAATAAGTTGAAATCA+TGG	0.434791	4:+92442872	None:intergenic
GGAATCTGTTTCAATTCAAA+GGG	0.434967	4:-92443130	MsG0480024022.01.T01:CDS
GAACTCACCACAACTGCTGC+TGG	0.437507	4:+92444408	None:intergenic
AGGAATCTGTTTCAATTCAA+AGG	0.438330	4:-92443131	MsG0480024022.01.T01:CDS
CAGCAGTTGTGGTGAGTTCA+AGG	0.440070	4:-92444404	MsG0480024022.01.T01:CDS
ACTCCCTTAAACCGCATTCA+TGG	0.443974	4:-92444623	MsG0480024022.01.T01:CDS
GTAGGGACTGGGACTGGTCT+TGG	0.448389	4:+92444674	None:intergenic
CATACTACAACTACAAAGAA+AGG	0.456924	4:-92442840	MsG0480024022.01.T01:CDS
AACATGGCTGATTATCCATT+CGG	0.461072	4:-92444722	MsG0480024022.01.T01:CDS
TGCAGTAGAGGTGTTTAAGA+GGG	0.463988	4:+92442963	None:intergenic
TGTTGTTAGGAGAAGTAGTA+GGG	0.464395	4:+92444657	None:intergenic
TCCTTATTGGGAAAAGTTGA+AGG	0.475905	4:+92442749	None:intergenic
CCAATAAGGAATGGAGATCA+TGG	0.480192	4:-92442736	MsG0480024022.01.T01:CDS
TCTAGTTGTTACTGTGGTTG+TGG	0.492333	4:+92442921	None:intergenic
CAGCAGCTGATTCCATTTGA+CGG	0.494340	4:+92444199	None:intergenic
AGAAACTCAATAAACTGGTT+GGG	0.503624	4:+92442631	None:intergenic
AAGAAACTCAATAAACTGGT+TGG	0.507314	4:+92442630	None:intergenic
ACCAGAACAGTTAAGAGCAC+TGG	0.518122	4:-92444370	MsG0480024022.01.T01:CDS
AGAATCACAAAGCTAGAGAA+AGG	0.519499	4:-92444233	MsG0480024022.01.T01:CDS
CTGATTATCCATTCGGTGGA+AGG	0.525296	4:-92444715	MsG0480024022.01.T01:CDS
ATACTACAACTACAAAGAAA+GGG	0.528240	4:-92442839	MsG0480024022.01.T01:CDS
TGTTGGATTTGTTCAGCAGA+AGG	0.532776	4:+92444318	None:intergenic
AATGAATAAGTTGAAATCAT+GGG	0.536539	4:+92442873	None:intergenic
GAAGTAGTAGGGACTGGGAC+TGG	0.539424	4:+92444668	None:intergenic
GGGACTGGTCTTGGCATGAG+AGG	0.539540	4:+92444683	None:intergenic
GCTAGCTGTTGTTGCAGTAG+AGG	0.542262	4:+92442951	None:intergenic
GATCAGTACTCTAGAACAGA+TGG	0.548364	4:-92443084	MsG0480024022.01.T01:CDS
CATTCGGTGGAAGGAAACTA+AGG	0.548710	4:-92444706	MsG0480024022.01.T01:CDS
AAAGAAGAAACTTTATGGAA+AGG	0.550327	4:-92443029	MsG0480024022.01.T01:CDS
CTTAGTTTCCTTCCACCGAA+TGG	0.550835	4:+92444707	None:intergenic
TTAGGAGAAGTAGTAGGGAC+TGG	0.552441	4:+92444662	None:intergenic
TAATAATCCAGCAGCAGTTG+TGG	0.553191	4:-92444415	MsG0480024022.01.T01:CDS
AAGAGGAAGAGTACTGGTAC+TGG	0.555814	4:+92443925	None:intergenic
CCTTATTGGGAAAAGTTGAA+GGG	0.559443	4:+92442750	None:intergenic
TGGATGGTGGGTTACAATGA+AGG	0.562024	4:-92444755	MsG0480024022.01.T01:CDS
CTGGAAGAATTGTATAGAAG+AGG	0.567704	4:-92444351	MsG0480024022.01.T01:CDS
CATAAGTCTAGTTGTTACTG+TGG	0.571838	4:+92442915	None:intergenic
AGTTGTTACTGTGGTTGTGG+TGG	0.572763	4:+92442924	None:intergenic
CTCTGCAAGAGGAAGAGTAC+TGG	0.573556	4:+92443919	None:intergenic
GAATTATAGACCTCTGCAAG+AGG	0.592853	4:+92443908	None:intergenic
TTGTAGTTGTAGTATGTGTG+AGG	0.596125	4:+92442847	None:intergenic
TAGGAGAAGTAGTAGGGACT+GGG	0.599416	4:+92444663	None:intergenic
CAGTACTCTTCCTCTTGCAG+AGG	0.600602	4:-92443918	MsG0480024022.01.T01:intron
TACTGCAACAACAGCTAGCG+TGG	0.608572	4:-92442947	MsG0480024022.01.T01:CDS
ACTGGTACTGGAATTTGTAG+AGG	0.614002	4:+92443937	None:intergenic
GTAGAGGTGTTTAAGAGGGT+AGG	0.618222	4:+92442967	None:intergenic
ATGGTGGGTTACAATGAAGG+TGG	0.633455	4:-92444752	MsG0480024022.01.T01:CDS
CTGGTACTGGAATTTGTAGA+GGG	0.635755	4:+92443938	None:intergenic
AGTTGACAACATGTGGATGG+TGG	0.636173	4:-92444768	None:intergenic
ATGGCTGATTATCCATTCGG+TGG	0.637470	4:-92444719	MsG0480024022.01.T01:CDS
AATCATTGCCACCATGAATG+CGG	0.641369	4:+92444612	None:intergenic
CCCTTAAACCGCATTCATGG+TGG	0.650854	4:-92444620	MsG0480024022.01.T01:CDS
AGTACTCTAGAACAGATGGA+TGG	0.652013	4:-92443080	MsG0480024022.01.T01:CDS
CATCACAATCTGCAGCAGCA+AGG	0.652597	4:-92444575	MsG0480024022.01.T01:intron
GTTGACAACATGTGGATGGT+GGG	0.672963	4:-92444767	None:intergenic
CCTAGTTGACAACATGTGGA+TGG	0.687638	4:-92444771	None:intergenic
TGAAGGTGGTGAGTTCAACA+TGG	0.718834	4:-92444738	MsG0480024022.01.T01:CDS
CAGTTGTGGTGAGTTCAAGG+TGG	0.724586	4:-92444401	MsG0480024022.01.T01:CDS
TTATGGAAAGGAATGCCACG+TGG	0.750564	4:-92443017	MsG0480024022.01.T01:CDS
TAACTGCATCATATGCCACG+TGG	0.781883	4:+92443002	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAATAAAATAAAATAAAAAA+AGG	+	Chr4:92444027-92444046	None:intergenic	0.0%
!!	AACATATATAAAAACAATAT+TGG	+	Chr4:92442869-92442888	None:intergenic	10.0%
!!	TAAAATAAAATAAAAAAAGG+TGG	+	Chr4:92444024-92444043	None:intergenic	10.0%
!!	GAAAGAAAGAATTTAATTAA+AGG	+	Chr4:92444207-92444226	None:intergenic	15.0%
!!	TAAGAAAGAAAGAAAAAAAA+GGG	+	Chr4:92444095-92444114	None:intergenic	15.0%
!!	TTTAAGGAATAATAATCATA+AGG	-	Chr4:92443604-92443623	MsG0480024022.01.T01:intron	15.0%
!!	AAAAAACAAAAACTAACCAT+AGG	+	Chr4:92444118-92444137	None:intergenic	20.0%
!!	AGAAAAGAAAAGAAAAGAAA+AGG	-	Chr4:92443749-92443768	MsG0480024022.01.T01:intron	20.0%
!!	GTAAGAAAGAAAGAAAAAAA+AGG	+	Chr4:92444096-92444115	None:intergenic	20.0%
!!	TTTCATAGAAAGAAGAATAA+TGG	+	Chr4:92443936-92443955	None:intergenic	20.0%
!!!	AAATGAATAAGTTGAAATCA+TGG	+	Chr4:92444504-92444523	None:intergenic	20.0%
!!!	AATGAATAAGTTGAAATCAT+GGG	+	Chr4:92444503-92444522	None:intergenic	20.0%
!!!	ATTATTCCTTAAAGACTTTT+TGG	+	Chr4:92443597-92443616	None:intergenic	20.0%
!!!	TTTAGTATTTTTTTGAGTTG+AGG	-	Chr4:92444157-92444176	MsG0480024022.01.T01:intron	20.0%
!!!	TTTGTTTTTTTTTTGTCAAC+AGG	-	Chr4:92443366-92443385	MsG0480024022.01.T01:intron	20.0%
!	AAAAGAGATATGTATTTGTC+TGG	+	Chr4:92443552-92443571	None:intergenic	25.0%
!	AAAATACTAAATAACGTGTG+AGG	+	Chr4:92444148-92444167	None:intergenic	25.0%
!	AAAGAAGAAACTTTATGGAA+AGG	-	Chr4:92444344-92444363	MsG0480024022.01.T01:CDS	25.0%
!	AAATAAAAAAAGGTGGATGT+TGG	+	Chr4:92444017-92444036	None:intergenic	25.0%
!	AATTCACCAAAAAGTCTTTA+AGG	-	Chr4:92443588-92443607	MsG0480024022.01.T01:intron	25.0%
!	AGAAAGTTTGGAAAAATTGA+AGG	-	Chr4:92443094-92443113	MsG0480024022.01.T01:CDS	25.0%
!	ATACTACAACTACAAAGAAA+GGG	-	Chr4:92444534-92444553	MsG0480024022.01.T01:intron	25.0%
!	CTGTAATTATTTAGTGTTAG+AGG	-	Chr4:92443245-92443264	MsG0480024022.01.T01:intron	25.0%
!	GTATGTAGTATGTACTAATA+AGG	+	Chr4:92443276-92443295	None:intergenic	25.0%
!!	AAGGCAAAAATGTTTTCTAT+TGG	-	Chr4:92443113-92443132	MsG0480024022.01.T01:CDS	25.0%
!!	TGATATGTTTTATCATGAGT+AGG	-	Chr4:92442908-92442927	MsG0480024022.01.T01:CDS	25.0%
!!	TTTTCTTTCTTTCTTACCTA+TGG	-	Chr4:92444099-92444118	MsG0480024022.01.T01:intron	25.0%
!!!	AATTTGTTGGGAAATGAAAA+GGG	-	Chr4:92443787-92443806	MsG0480024022.01.T01:intron	25.0%
!!!	ACTTTTTGGTGAATTGATTA+AGG	+	Chr4:92443583-92443602	None:intergenic	25.0%
!!!	CTTTTTGGTGAATTGATTAA+GGG	+	Chr4:92443582-92443601	None:intergenic	25.0%
!!!	TAATTTGTTGGGAAATGAAA+AGG	-	Chr4:92443786-92443805	MsG0480024022.01.T01:intron	25.0%
	AAGAAACTCAATAAACTGGT+TGG	+	Chr4:92444746-92444765	None:intergenic	30.0%
	ACAGCAAAGAAGAAACTTTA+TGG	-	Chr4:92444339-92444358	MsG0480024022.01.T01:CDS	30.0%
	AGAAACTCAATAAACTGGTT+GGG	+	Chr4:92444745-92444764	None:intergenic	30.0%
	AGGAATCTGTTTCAATTCAA+AGG	-	Chr4:92444242-92444261	MsG0480024022.01.T01:CDS	30.0%
	CATACTACAACTACAAAGAA+AGG	-	Chr4:92444533-92444552	MsG0480024022.01.T01:intron	30.0%
	CTTTCTTTCTTTCTTTCTAC+AGG	-	Chr4:92444222-92444241	MsG0480024022.01.T01:CDS	30.0%
	GGAATCTGTTTCAATTCAAA+GGG	-	Chr4:92444243-92444262	MsG0480024022.01.T01:CDS	30.0%
	GTGAAGTCAAATTAAAGCAA+GGG	+	Chr4:92443989-92444008	None:intergenic	30.0%
	TAAATAACGTGTGAGGAAAA+AGG	+	Chr4:92444141-92444160	None:intergenic	30.0%
	TAATGCACAAACTAGGTATA+GGG	-	Chr4:92443720-92443739	MsG0480024022.01.T01:intron	30.0%
	TACATACTACATACATGACA+TGG	-	Chr4:92443282-92443301	MsG0480024022.01.T01:intron	30.0%
	TCATTCATTCGTATTGTTGT+TGG	-	Chr4:92443319-92443338	MsG0480024022.01.T01:intron	30.0%
	TGCTGTTATGAAATTTAGCT+GGG	-	Chr4:92443844-92443863	MsG0480024022.01.T01:intron	30.0%
	TGTGAAGTCAAATTAAAGCA+AGG	+	Chr4:92443990-92444009	None:intergenic	30.0%
!	GAAAGAAGAATAATGGAGAT+AGG	+	Chr4:92443929-92443948	None:intergenic	30.0%
!	GTTTTCATCTCATACTCATA+CGG	-	Chr4:92444179-92444198	MsG0480024022.01.T01:CDS	30.0%
!	TCCTTGTAGTAGTAATTTGT+TGG	-	Chr4:92443774-92443793	MsG0480024022.01.T01:intron	30.0%
!	TGTAGTTGATACTGTTTAAG+TGG	+	Chr4:92444573-92444592	None:intergenic	30.0%
!	TTTTCCAAACTTTCTAAGCT+GGG	+	Chr4:92443089-92443108	None:intergenic	30.0%
!	TTTTTCCAAACTTTCTAAGC+TGG	+	Chr4:92443090-92443109	None:intergenic	30.0%
!!	CCTTGTAGTAGTAATTTGTT+GGG	-	Chr4:92443775-92443794	MsG0480024022.01.T01:intron	30.0%
!!	GTTATAGTTGAAGTGTTGTT+AGG	+	Chr4:92442732-92442751	None:intergenic	30.0%
	AACATGGCTGATTATCCATT+CGG	-	Chr4:92442651-92442670	MsG0480024022.01.T01:CDS	35.0%
	AAGTTGAACACACCAAAAAC+TGG	-	Chr4:92443409-92443428	MsG0480024022.01.T01:intron	35.0%
	ACGGAAGAAACTCAATAAAC+TGG	+	Chr4:92444750-92444769	None:intergenic	35.0%
	AGAATCACAAAGCTAGAGAA+AGG	-	Chr4:92443140-92443159	MsG0480024022.01.T01:intron	35.0%
	CACAGTAACAACTAGACTTA+TGG	-	Chr4:92444459-92444478	MsG0480024022.01.T01:intron	35.0%
	CAGTAAGTAATGCACAAACT+AGG	-	Chr4:92443713-92443732	MsG0480024022.01.T01:intron	35.0%
	CATAAGTCTAGTTGTTACTG+TGG	+	Chr4:92444461-92444480	None:intergenic	35.0%
	CATGATCTCCATTCCTTATT+GGG	+	Chr4:92444639-92444658	None:intergenic	35.0%
	CCCAACAAATTACTACTACA+AGG	+	Chr4:92443778-92443797	None:intergenic	35.0%
	CCTTATTGGGAAAAGTTGAA+GGG	+	Chr4:92444626-92444645	None:intergenic	35.0%
	CTGCTGTTATGAAATTTAGC+TGG	-	Chr4:92443843-92443862	MsG0480024022.01.T01:intron	35.0%
	CTGGAAGAATTGTATAGAAG+AGG	-	Chr4:92443022-92443041	MsG0480024022.01.T01:CDS	35.0%
	GCTCTTGAAAAGAAAGACTT+AGG	-	Chr4:92443208-92443227	MsG0480024022.01.T01:intron	35.0%
	GGTGAATTGATTAAGGGAAA+AGG	+	Chr4:92443576-92443595	None:intergenic	35.0%
	GTAATGCACAAACTAGGTAT+AGG	-	Chr4:92443719-92443738	MsG0480024022.01.T01:intron	35.0%
	GTAATTCTGCTTCATCGAAT+TGG	+	Chr4:92444321-92444340	None:intergenic	35.0%
	TATAATCAGTGCTTAGTGAG+TGG	+	Chr4:92443638-92443657	None:intergenic	35.0%
	TCCTTATTGGGAAAAGTTGA+AGG	+	Chr4:92444627-92444646	None:intergenic	35.0%
	TGTTGTTAGGAGAAGTAGTA+GGG	+	Chr4:92442719-92442738	None:intergenic	35.0%
	TTGTAGTTGTAGTATGTGTG+AGG	+	Chr4:92444529-92444548	None:intergenic	35.0%
!	AAGTCAAGTCAGTAGCTTTT+GGG	-	Chr4:92443893-92443912	MsG0480024022.01.T01:intron	35.0%
!	ATGAAATTTAGCTGGGCTTT+TGG	-	Chr4:92443851-92443870	MsG0480024022.01.T01:intron	35.0%
!	CAACTTTTCCCAATAAGGAA+TGG	-	Chr4:92444628-92444647	MsG0480024022.01.T01:CDS	35.0%
!	GAAAAAAAAGGGCATATGCA+CGG	+	Chr4:92444084-92444103	None:intergenic	35.0%
!	TGAAATTTAGCTGGGCTTTT+GGG	-	Chr4:92443852-92443871	MsG0480024022.01.T01:intron	35.0%
!!	CATGGGTTTTGATGAGTTTT+GGG	+	Chr4:92444486-92444505	None:intergenic	35.0%
!!	TCATGGGTTTTGATGAGTTT+TGG	+	Chr4:92444487-92444506	None:intergenic	35.0%
	AATCATTGCCACCATGAATG+CGG	+	Chr4:92442764-92442783	None:intergenic	40.0%
	CCAATAAGGAATGGAGATCA+TGG	-	Chr4:92444637-92444656	MsG0480024022.01.T01:CDS	40.0%
	CCATGATCTCCATTCCTTAT+TGG	+	Chr4:92444640-92444659	None:intergenic	40.0%
	GAATTATAGACCTCTGCAAG+AGG	+	Chr4:92443468-92443487	None:intergenic	40.0%
	TAATAATCCAGCAGCAGTTG+TGG	-	Chr4:92442958-92442977	MsG0480024022.01.T01:CDS	40.0%
	TCTAGTTGTTACTGTGGTTG+TGG	+	Chr4:92444455-92444474	None:intergenic	40.0%
!	AAGGAAGGAATGCAGCTTTT+AGG	+	Chr4:92443814-92443833	None:intergenic	40.0%
!	ACTGGTACTGGAATTTGTAG+AGG	+	Chr4:92443439-92443458	None:intergenic	40.0%
!	CAAGTCAAGTCAGTAGCTTT+TGG	-	Chr4:92443892-92443911	MsG0480024022.01.T01:intron	40.0%
!	CCCTTCAACTTTTCCCAATA+AGG	-	Chr4:92444623-92444642	MsG0480024022.01.T01:CDS	40.0%
!	CTGGTACTGGAATTTGTAGA+GGG	+	Chr4:92443438-92443457	None:intergenic	40.0%
!	GAAATTTAGCTGGGCTTTTG+GGG	-	Chr4:92443853-92443872	MsG0480024022.01.T01:intron	40.0%
!	GTGTTGTTAGGAGAAGTAGT+AGG	+	Chr4:92442720-92442739	None:intergenic	40.0%
!	TGTTGGATTTGTTCAGCAGA+AGG	+	Chr4:92443058-92443077	None:intergenic	40.0%
!!	AGTACTCTAGAACAGATGGA+TGG	-	Chr4:92444293-92444312	MsG0480024022.01.T01:CDS	40.0%
!!	GATCAGTACTCTAGAACAGA+TGG	-	Chr4:92444289-92444308	MsG0480024022.01.T01:CDS	40.0%
!!	TGCAGTAGAGGTGTTTAAGA+GGG	+	Chr4:92444413-92444432	None:intergenic	40.0%
!!	TTGCAGTAGAGGTGTTTAAG+AGG	+	Chr4:92444414-92444433	None:intergenic	40.0%
!!!	AAGCAAGGGTTGTCTTGTTT+TGG	+	Chr4:92443975-92443994	None:intergenic	40.0%
	ACTCCCTTAAACCGCATTCA+TGG	-	Chr4:92442750-92442769	MsG0480024022.01.T01:CDS	45.0%
	ACTGCCCAGCTTAGAAAGTT+TGG	-	Chr4:92443082-92443101	MsG0480024022.01.T01:CDS	45.0%
	AGTTGTTACTGTGGTTGTGG+TGG	+	Chr4:92444452-92444471	None:intergenic	45.0%
	ATGGCTGATTATCCATTCGG+TGG	-	Chr4:92442654-92442673	MsG0480024022.01.T01:CDS	45.0%
	CCACCATGAATGCGGTTTAA+GGG	+	Chr4:92442756-92442775	None:intergenic	45.0%
	CTGCATTCCTTCCTTTCTGT+CGG	-	Chr4:92443819-92443838	MsG0480024022.01.T01:intron	45.0%
	CTTAGTTTCCTTCCACCGAA+TGG	+	Chr4:92442669-92442688	None:intergenic	45.0%
	GCTCTTAACTGTTCTGGTGT+TGG	+	Chr4:92443001-92443020	None:intergenic	45.0%
	TAACTGCATCATATGCCACG+TGG	+	Chr4:92444374-92444393	None:intergenic	45.0%
	TAGGAGAAGTAGTAGGGACT+GGG	+	Chr4:92442713-92442732	None:intergenic	45.0%
	TCCAGTGCTCTTAACTGTTC+TGG	+	Chr4:92443007-92443026	None:intergenic	45.0%
	TCTCTGTCTCTTTGTGTTGC+TGG	+	Chr4:92444699-92444718	None:intergenic	45.0%
	TGAAGGTGGTGAGTTCAACA+TGG	-	Chr4:92442635-92442654	MsG0480024022.01.T01:CDS	45.0%
	TGCATTCCTTCCTTTCTGTC+GGG	-	Chr4:92443820-92443839	MsG0480024022.01.T01:intron	45.0%
	TTAGGAGAAGTAGTAGGGAC+TGG	+	Chr4:92442714-92442733	None:intergenic	45.0%
	TTATGGAAAGGAATGCCACG+TGG	-	Chr4:92444356-92444375	MsG0480024022.01.T01:CDS	45.0%
!	ACCAGAACAGTTAAGAGCAC+TGG	-	Chr4:92443003-92443022	MsG0480024022.01.T01:CDS	45.0%
!	CAGCAGCTGATTCCATTTGA+CGG	+	Chr4:92443177-92443196	None:intergenic	45.0%
!	CATTCGGTGGAAGGAAACTA+AGG	-	Chr4:92442667-92442686	MsG0480024022.01.T01:CDS	45.0%
!	CTGATTATCCATTCGGTGGA+AGG	-	Chr4:92442658-92442677	MsG0480024022.01.T01:CDS	45.0%
!	TAAGCTGGGCAGTGATTTGT+TGG	+	Chr4:92443075-92443094	None:intergenic	45.0%
!	TGTAGAGGGTAGCCAGTTTT+TGG	+	Chr4:92443424-92443443	None:intergenic	45.0%
!	TTTTGTCAACAGGCGCAAGT+AGG	-	Chr4:92443376-92443395	MsG0480024022.01.T01:intron	45.0%
!!	AAGAGGAAGAGTACTGGTAC+TGG	+	Chr4:92443451-92443470	None:intergenic	45.0%
!!	ATGGTGGGTTACAATGAAGG+TGG	-	Chr4:92442621-92442640	MsG0480024022.01.T01:CDS	45.0%
!!	GTAGAGGTGTTTAAGAGGGT+AGG	+	Chr4:92444409-92444428	None:intergenic	45.0%
!!	TGGATGGTGGGTTACAATGA+AGG	-	Chr4:92442618-92442637	MsG0480024022.01.T01:CDS	45.0%
!!!	CAAGGGTTGTCTTGTTTTGG+TGG	+	Chr4:92443972-92443991	None:intergenic	45.0%
!!	GTATTATATAATATAATATA+TGG	-	Chr4:92442820-92442839	MsG0480024022.01.T01:CDS	5.0%
	ATAACAGCAGCCCGACAGAA+AGG	+	Chr4:92443833-92443852	None:intergenic	50.0%
	CAGCAGTTGTGGTGAGTTCA+AGG	-	Chr4:92442969-92442988	MsG0480024022.01.T01:CDS	50.0%
	CAGTACTCTTCCTCTTGCAG+AGG	-	Chr4:92443455-92443474	MsG0480024022.01.T01:intron	50.0%
	CAGTTGTGGTGAGTTCAAGG+TGG	-	Chr4:92442972-92442991	MsG0480024022.01.T01:CDS	50.0%
	CATCACAATCTGCAGCAGCA+AGG	-	Chr4:92442798-92442817	MsG0480024022.01.T01:CDS	50.0%
	CCCTTAAACCGCATTCATGG+TGG	-	Chr4:92442753-92442772	MsG0480024022.01.T01:CDS	50.0%
	GCAAAAACGACGCCGTCAAA+TGG	-	Chr4:92443162-92443181	MsG0480024022.01.T01:intron	50.0%
	GCCACCATGAATGCGGTTTA+AGG	+	Chr4:92442757-92442776	None:intergenic	50.0%
	GCTAGCTGTTGTTGCAGTAG+AGG	+	Chr4:92444425-92444444	None:intergenic	50.0%
	TACTGCAACAACAGCTAGCG+TGG	-	Chr4:92444426-92444445	MsG0480024022.01.T01:CDS	50.0%
!	CTCTGCAAGAGGAAGAGTAC+TGG	+	Chr4:92443457-92443476	None:intergenic	50.0%
	GAACTCACCACAACTGCTGC+TGG	+	Chr4:92442968-92442987	None:intergenic	55.0%
	GAAGTAGTAGGGACTGGGAC+TGG	+	Chr4:92442708-92442727	None:intergenic	55.0%
	CAGCAGCCCGACAGAAAGGA+AGG	+	Chr4:92443829-92443848	None:intergenic	60.0%
!!	GGGACTGGTCTTGGCATGAG+AGG	+	Chr4:92442693-92442712	None:intergenic	60.0%
!!	GTAGGGACTGGGACTGGTCT+TGG	+	Chr4:92442702-92442721	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	92442615	92444780	92442615	ID=MsG0480024022.01;Name=MsG0480024022.01
Chr4	mRNA	92442615	92444780	92442615	ID=MsG0480024022.01.T01;Parent=MsG0480024022.01;Name=MsG0480024022.01.T01;_AED=0.33;_eAED=0.33;_QI=0\|0\|0\|1\|1\|1\|4\|0\|376
Chr4	exon	92444576	92444780	92444576	ID=MsG0480024022.01.T01:exon:34148;Parent=MsG0480024022.01.T01
Chr4	exon	92444166	92444465	92444166	ID=MsG0480024022.01.T01:exon:34147;Parent=MsG0480024022.01.T01
Chr4	exon	92443919	92444007	92443919	ID=MsG0480024022.01.T01:exon:34146;Parent=MsG0480024022.01.T01
Chr4	exon	92442615	92443151	92442615	ID=MsG0480024022.01.T01:exon:34145;Parent=MsG0480024022.01.T01
Chr4	CDS	92444576	92444780	92444576	ID=MsG0480024022.01.T01:cds;Parent=MsG0480024022.01.T01
Chr4	CDS	92444166	92444465	92444166	ID=MsG0480024022.01.T01:cds;Parent=MsG0480024022.01.T01
Chr4	CDS	92443919	92444007	92443919	ID=MsG0480024022.01.T01:cds;Parent=MsG0480024022.01.T01
Chr4	CDS	92442615	92443151	92442615	ID=MsG0480024022.01.T01:cds;Parent=MsG0480024022.01.T01

Gene Sequence

>MsG0480024022.01.T01

ATGTGGATGGTGGGTTACAATGAAGGTGGTGAGTTCAACATGGCTGATTATCCATTCGGTGGAAGGAAACTAAGGCCTCTCATGCCAAGACCAGTCCCAGTCCCTACTACTTCTCCTAACAACACTTCAACTATAACTCCCTTAAACCGCATTCATGGTGGCAATGATTTATTTTCACAATATCATCACAATCTGCAGCAGCAAGGAGATCATAGCAAGAGATCAGAGTTGAATAATAATCCAGCAGCAGTTGTGGTGAGTTCAAGGTGGAATCCAACACCAGAACAGTTAAGAGCACTGGAAGAATTGTATAGAAGAGGAACAAGAACACCTTCTGCTGAACAAATCCAACAAATCACTGCCCAGCTTAGAAAGTTTGGAAAAATTGAAGGCAAAAATGTTTTCTATTGGTTTCAGAATCACAAAGCTAGAGAAAGGCAAAAACGACGCCGTCAAATGGAATCAGCTGCTGAGTTTGATTCTGCTCTTGAAAAGAAAGACTTAGGCGCAAGTAGGACAGTGTTTGAAGTTGAACACACCAAAAACTGGCTACCCTCTACAAATTCCAGTACCAGTACTCTTCCTCTTGCAGAGGAATCTGTTTCAATTCAAAGGGCAGCAGCAGCAGCAGCAAAAGCAGATCAGTACTCTAGAACAGATGGATGGCTCCAATTCGATGAAGCAGAATTACAGCAAAGAAGAAACTTTATGGAAAGGAATGCCACGTGGCATATGATGCAGTTAACTTCTTCTTGTCCTACCCTCTTAAACACCTCTACTGCAACAACAGCTAGCGTGGCCACCACAACCACAGTAACAACTAGACTTATGGACCCAAAACTCATCAAAACCCATGATTTCAACTTATTCATTTCACCTCACACATACTACAACTACAAAGAAAGGGAAAACGCTTTTATCCACTTAAACAGTATCAACTACAATAGTACTCATCAAAATGAATCTGATCAAACCCTTCAACTTTTCCCAATAAGGAATGGAGATCATGGATGCACTAATGATGATCATCATCATAACATCATTAACCAGCAACACAAAGAGACAGAGATATCAGCTTCAGCAATCAATGCACCCAACCAGTTTATTGAGTTTCTTCCGTTGAAAAACTGA

Protein sequence

>MsG0480024022.01.T01

MWMVGYNEGGEFNMADYPFGGRKLRPLMPRPVPVPTTSPNNTSTITPLNRIHGGNDLFSQYHHNLQQQGDHSKRSELNNNPAAVVVSSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRKFGKIEGKNVFYWFQNHKARERQKRRRQMESAAEFDSALEKKDLGASRTVFEVEHTKNWLPSTNSSTSTLPLAEESVSIQRAAAAAAKADQYSRTDGWLQFDEAELQQRRNFMERNATWHMMQLTSSCPTLLNTSTATTASVATTTTVTTRLMDPKLIKTHDFNLFISPHTYYNYKERENAFIHLNSINYNSTHQNESDQTLQLFPIRNGDHGCTNDDHHHNIINQQHKETEISASAINAPNQFIEFLPLKN*