AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004975.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004975.01.T01 MTR_1g090670 98.322 298 2 2 1 298 1 295 0.0 603
MsG0180004975.01.T01 MTR_1g090670 100.000 220 0 0 79 298 1 220 4.32e-165 457
MsG0180004975.01.T01 MTR_2g027800 69.782 321 66 6 1 298 1 313 1.70e-150 424
MsG0180004975.01.T01 MTR_2g027800 67.296 318 65 6 1 298 1 299 4.27e-140 397
MsG0180004975.01.T01 MTR_6g444980 53.529 170 66 4 32 197 20 180 1.84e-47 163
MsG0180004975.01.T01 MTR_6g444980 56.000 150 54 3 32 178 20 160 2.03e-44 154
MsG0180004975.01.T01 MTR_5g027440 52.980 151 63 4 40 184 18 166 4.14e-43 149
MsG0180004975.01.T01 MTR_5g041350 50.704 142 67 1 40 178 8 149 4.31e-39 140
MsG0180004975.01.T01 MTR_4g081710 48.718 156 71 4 40 189 10 162 5.65e-39 140
MsG0180004975.01.T01 MTR_7g088070 48.252 143 52 2 47 181 50 178 1.43e-38 137
MsG0180004975.01.T01 MTR_7g088070 48.921 139 53 2 47 181 50 174 1.47e-38 137
MsG0180004975.01.T01 MTR_6g032990 39.583 192 108 3 27 210 22 213 5.61e-38 139
MsG0180004975.01.T01 MTR_2g086450 41.270 189 99 4 34 210 32 220 8.50e-38 138
MsG0180004975.01.T01 MTR_2g027860 47.059 136 63 2 47 181 49 176 1.20e-32 123
MsG0180004975.01.T01 MTR_7g098250 34.894 235 125 8 47 270 262 479 1.64e-31 122
MsG0180004975.01.T01 MTR_1g080330 40.559 143 76 2 39 181 167 300 4.71e-28 112
MsG0180004975.01.T01 MTR_7g115530 38.889 144 79 1 47 190 218 352 1.26e-27 111
MsG0180004975.01.T01 MTR_1g053835 35.882 170 84 4 47 212 258 406 3.69e-26 107
MsG0180004975.01.T01 MTR_7g093030 36.646 161 81 4 47 201 212 357 9.22e-26 105
MsG0180004975.01.T01 MTR_1g080330 44.628 121 58 2 43 163 171 282 4.18e-25 102
MsG0180004975.01.T01 MTR_7g115530 42.735 117 58 1 47 163 218 325 5.81e-24 99.8
MsG0180004975.01.T01 MTR_7g115530 63.158 57 21 0 47 103 218 274 2.95e-20 89.0
MsG0180004975.01.T01 MTR_7g068600 35.366 164 80 4 47 197 13 163 4.09e-20 87.4
MsG0180004975.01.T01 MTR_7g115530 63.158 57 21 0 47 103 218 274 1.03e-19 88.2
MsG0180004975.01.T01 MTR_7g093030 61.404 57 22 0 47 103 212 268 1.60e-19 87.0
MsG0180004975.01.T01 MTR_7g115530 65.385 52 18 0 47 98 218 269 4.06e-18 82.8
MsG0180004975.01.T01 MTR_7g115530 64.706 51 18 0 47 97 218 268 2.71e-17 80.9
MsG0180004975.01.T01 MTR_2g023580 64.912 57 20 0 48 104 56 112 3.00e-17 79.7
MsG0180004975.01.T01 MTR_7g069660 60.714 56 22 0 48 103 72 127 7.59e-17 80.1
MsG0180004975.01.T01 MTR_1g053800 32.653 147 96 3 32 176 162 307 9.50e-17 79.3
MsG0180004975.01.T01 MTR_1g053830 54.545 55 25 0 49 103 20 74 3.10e-16 73.2
MsG0180004975.01.T01 MTR_6g071625 58.333 60 25 0 48 107 203 262 8.92e-16 77.0
MsG0180004975.01.T01 MTR_1g021520 60.000 60 24 0 48 107 127 186 1.14e-15 76.3
MsG0180004975.01.T01 MTR_2g084230 60.714 56 22 0 48 103 98 153 1.32e-15 76.3
MsG0180004975.01.T01 MTR_1g112370 46.988 83 29 2 48 115 23 105 1.58e-15 76.3
MsG0180004975.01.T01 MTR_3g450310 61.111 54 21 0 47 100 19 72 1.64e-15 74.3
MsG0180004975.01.T01 MTR_2g084230 60.714 56 22 0 48 103 98 153 1.69e-15 76.3
MsG0180004975.01.T01 MTR_8g086410 56.452 62 25 1 48 107 112 173 1.85e-15 76.6
MsG0180004975.01.T01 MTR_8g086410 56.452 62 25 1 48 107 110 171 1.87e-15 76.6
MsG0180004975.01.T01 MTR_3g064840 54.930 71 31 1 48 117 275 345 2.14e-15 76.6
MsG0180004975.01.T01 MTR_8g066310 62.500 56 21 0 48 103 174 229 2.44e-15 75.9
MsG0180004975.01.T01 MTR_0223s0040 62.264 53 20 0 48 100 19 71 4.35e-15 74.3
MsG0180004975.01.T01 MTR_5g029470 58.333 60 25 0 48 107 220 279 6.21e-15 75.1
MsG0180004975.01.T01 MTR_8g086410 50.746 67 31 1 48 112 112 178 5.11e-14 72.4
MsG0180004975.01.T01 MTR_2g016220 55.357 56 25 0 48 103 90 145 1.62e-13 70.5
MsG0180004975.01.T01 MTR_2g016220 55.357 56 25 0 48 103 90 145 1.66e-13 70.5
MsG0180004975.01.T01 MTR_4g121020 61.818 55 20 1 47 101 111 164 1.91e-13 70.9
MsG0180004975.01.T01 MTR_5g017980 58.621 58 24 0 44 101 190 247 1.95e-13 70.1
MsG0180004975.01.T01 MTR_4g121020 61.818 55 20 1 47 101 215 268 2.12e-13 70.9
MsG0180004975.01.T01 MTR_4g121020 61.818 55 20 1 47 101 215 268 2.12e-13 70.9
MsG0180004975.01.T01 MTR_7g093010 34.028 144 89 2 47 184 213 356 5.83e-13 68.9
MsG0180004975.01.T01 MTR_4g064730 60.000 55 21 1 47 101 131 184 1.07e-12 67.8
MsG0180004975.01.T01 MTR_1g032570 58.182 55 22 1 47 101 131 184 2.58e-12 67.4
MsG0180004975.01.T01 MTR_1g032570 58.182 55 22 1 47 101 200 253 2.97e-12 67.4
MsG0180004975.01.T01 MTR_1g093080 58.182 55 23 0 47 101 211 265 3.21e-12 66.6
MsG0180004975.01.T01 MTR_7g089010 60.000 55 21 1 47 101 91 144 3.48e-12 66.2
MsG0180004975.01.T01 MTR_2g016220 48.438 64 32 1 48 111 90 152 3.94e-12 66.6
MsG0180004975.01.T01 MTR_5g017980 58.621 58 23 1 44 101 189 245 3.97e-12 66.2
MsG0180004975.01.T01 MTR_5g017980 58.621 58 23 1 44 101 190 246 4.03e-12 66.2
MsG0180004975.01.T01 MTR_2g034960 54.237 59 26 1 43 101 207 264 6.31e-12 66.2
MsG0180004975.01.T01 MTR_1g013170 55.932 59 25 1 43 101 187 244 8.97e-12 65.9
MsG0180004975.01.T01 MTR_4g113140 58.182 55 23 0 47 101 235 289 1.25e-11 65.1
MsG0180004975.01.T01 MTR_4g021790 52.542 59 27 1 43 101 164 221 1.28e-11 64.3
MsG0180004975.01.T01 MTR_2g450070 49.153 59 29 1 43 101 209 266 2.55e-11 64.7
MsG0180004975.01.T01 MTR_3g106220 45.122 82 35 2 47 119 198 278 2.85e-11 64.3
MsG0180004975.01.T01 MTR_2g450070 49.153 59 29 1 43 101 209 266 2.94e-11 64.3
MsG0180004975.01.T01 MTR_4g086835 56.364 55 24 0 47 101 274 328 3.32e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004975.01.T01 AT3G24120 49.138 232 92 5 36 243 30 259 9.10e-65 206
MsG0180004975.01.T01 AT4G13640 48.889 225 95 4 37 242 27 250 8.78e-64 203
MsG0180004975.01.T01 AT3G24120 48.511 235 92 6 36 243 30 262 1.46e-62 200
MsG0180004975.01.T01 AT4G13640 48.246 228 95 5 37 242 27 253 1.37e-61 197
MsG0180004975.01.T01 AT1G79430 54.321 162 61 4 32 189 19 171 2.05e-47 162
MsG0180004975.01.T01 AT3G12730 51.282 156 58 4 40 186 16 162 2.56e-40 140
MsG0180004975.01.T01 AT1G69580 47.337 169 68 4 36 189 23 185 2.79e-40 143
MsG0180004975.01.T01 AT1G69580 47.619 168 70 5 36 189 23 186 2.20e-39 141
MsG0180004975.01.T01 AT3G04030 40.084 237 106 8 34 244 32 258 2.34e-39 142
MsG0180004975.01.T01 AT5G18240 37.447 235 115 6 34 244 32 258 2.37e-37 137
MsG0180004975.01.T01 AT5G18240 37.447 235 115 6 34 244 32 258 2.37e-37 137
MsG0180004975.01.T01 AT3G04030 39.241 237 107 9 34 244 32 257 2.03e-36 134
MsG0180004975.01.T01 AT5G18240 37.447 235 113 7 34 244 32 256 1.67e-35 132
MsG0180004975.01.T01 AT5G45580 43.275 171 79 5 40 196 16 182 2.71e-35 129
MsG0180004975.01.T01 AT5G45580 43.976 166 83 4 41 196 1 166 3.69e-35 128
MsG0180004975.01.T01 AT3G04030 38.819 237 103 9 34 244 32 252 7.04e-35 130
MsG0180004975.01.T01 AT2G01060 47.407 135 63 1 47 181 15 141 1.29e-34 127
MsG0180004975.01.T01 AT5G18240 36.170 235 112 7 34 244 32 252 8.52e-33 125
MsG0180004975.01.T01 AT5G18240 36.170 235 112 7 34 244 32 252 8.52e-33 125
MsG0180004975.01.T01 AT5G06800 41.481 135 74 1 47 181 192 321 1.26e-28 113
MsG0180004975.01.T01 AT3G13040 43.871 155 66 4 41 182 227 373 2.33e-28 113
MsG0180004975.01.T01 AT3G13040 43.871 155 66 4 41 182 227 373 2.33e-28 113
MsG0180004975.01.T01 AT3G13040 43.871 155 66 4 41 182 227 373 2.33e-28 113
MsG0180004975.01.T01 AT3G04450 38.750 160 83 4 32 187 185 333 2.39e-27 110
MsG0180004975.01.T01 AT3G04450 38.750 160 83 4 32 187 185 333 2.39e-27 110
MsG0180004975.01.T01 AT3G04450 38.750 160 83 4 32 187 225 373 3.24e-27 110
MsG0180004975.01.T01 AT5G06800 40.000 140 64 2 47 181 192 316 3.27e-26 106
MsG0180004975.01.T01 AT5G29000 38.356 146 80 2 47 190 188 325 2.03e-25 104
MsG0180004975.01.T01 AT5G29000 38.356 146 80 2 47 190 188 325 2.03e-25 104
MsG0180004975.01.T01 AT4G28610 40.441 136 71 2 47 181 225 351 2.61e-25 104
MsG0180004975.01.T01 AT5G29000 38.356 146 80 2 47 190 231 368 3.21e-25 104
MsG0180004975.01.T01 AT2G20400 39.706 136 72 2 47 181 231 357 2.43e-24 102
MsG0180004975.01.T01 AT2G06020 62.121 66 25 0 38 103 77 142 3.50e-24 99.8
MsG0180004975.01.T01 AT2G20400 39.259 135 73 1 47 181 231 356 1.63e-23 99.8
MsG0180004975.01.T01 AT1G79430 47.826 115 47 4 79 189 1 106 1.62e-20 89.7
MsG0180004975.01.T01 AT3G04450 47.191 89 41 2 32 120 225 307 4.12e-19 86.3
MsG0180004975.01.T01 AT5G06800 61.404 57 22 0 47 103 192 248 4.64e-19 85.5
MsG0180004975.01.T01 AT5G29000 59.649 57 23 0 47 103 231 287 4.95e-18 83.2
MsG0180004975.01.T01 AT4G04605 62.264 53 20 0 48 100 15 67 1.47e-17 80.1
MsG0180004975.01.T01 AT2G42660 62.500 56 21 0 48 103 51 106 5.54e-17 79.3
MsG0180004975.01.T01 AT2G02060 61.017 59 23 0 46 104 28 86 7.73e-17 79.0
MsG0180004975.01.T01 AT2G02060 61.017 59 23 0 46 104 28 86 7.73e-17 79.0
MsG0180004975.01.T01 AT3G04030 35.417 192 88 8 79 244 1 182 8.77e-17 79.7
MsG0180004975.01.T01 AT1G14600 63.636 55 20 0 46 100 22 76 1.18e-16 78.2
MsG0180004975.01.T01 AT2G38300 62.500 56 21 0 48 103 55 110 2.98e-16 78.2
MsG0180004975.01.T01 AT1G32240 50.617 81 40 0 48 128 214 294 4.15e-16 78.2
MsG0180004975.01.T01 AT1G32240 50.617 81 40 0 48 128 214 294 5.17e-16 78.2
MsG0180004975.01.T01 AT2G40260 42.553 94 54 0 10 103 45 138 7.50e-16 77.8
MsG0180004975.01.T01 AT5G16560 54.286 70 30 1 48 117 220 287 2.13e-15 76.3
MsG0180004975.01.T01 AT5G42630 58.333 60 25 0 48 107 106 165 2.55e-15 73.9
MsG0180004975.01.T01 AT5G42630 58.333 60 25 0 48 107 106 165 5.92e-15 73.9
MsG0180004975.01.T01 AT2G01060 40.000 100 52 1 82 181 1 92 1.10e-14 72.4
MsG0180004975.01.T01 AT4G17695 50.000 74 33 1 48 117 165 238 1.70e-14 73.2
MsG0180004975.01.T01 AT3G12730 41.026 117 51 5 79 186 1 108 7.36e-14 68.9
MsG0180004975.01.T01 AT5G59570 60.000 55 21 1 47 101 141 194 4.79e-13 68.6
MsG0180004975.01.T01 AT5G59570 60.000 55 21 1 47 101 141 194 4.79e-13 68.6
MsG0180004975.01.T01 AT4G04580 47.143 70 34 2 37 104 3 71 5.37e-13 66.2
MsG0180004975.01.T01 AT3G46640 60.000 55 21 1 47 101 144 197 5.77e-13 68.6
MsG0180004975.01.T01 AT3G46640 60.000 55 21 1 47 101 144 197 5.77e-13 68.6
MsG0180004975.01.T01 AT3G46640 60.000 55 21 1 47 101 144 197 6.75e-13 68.6
MsG0180004975.01.T01 AT4G37180 58.491 53 22 0 49 101 212 264 9.18e-13 68.2
MsG0180004975.01.T01 AT4G37180 58.491 53 22 0 49 101 219 271 1.00e-12 68.2
MsG0180004975.01.T01 AT3G04030 33.854 192 85 9 79 244 1 176 1.05e-12 67.8
MsG0180004975.01.T01 AT3G10760 53.623 69 28 2 33 101 94 158 1.08e-12 67.8
MsG0180004975.01.T01 AT1G49560 60.000 55 22 0 47 101 192 246 1.19e-12 67.8
MsG0180004975.01.T01 AT5G05090 60.000 55 21 1 47 101 81 134 2.09e-12 66.6
MsG0180004975.01.T01 AT3G16857 58.182 55 22 1 47 101 167 220 2.67e-12 67.4
MsG0180004975.01.T01 AT3G16857 58.182 55 22 1 47 101 237 290 3.21e-12 67.4
MsG0180004975.01.T01 AT3G16857 58.182 55 22 1 47 101 237 290 3.29e-12 67.4
MsG0180004975.01.T01 AT2G40970 60.000 55 21 1 47 101 105 158 4.28e-12 65.5
MsG0180004975.01.T01 AT3G25790 60.000 50 20 0 52 101 201 250 5.68e-12 65.9
MsG0180004975.01.T01 AT5G58080 46.914 81 34 3 47 119 194 273 5.88e-12 66.6
MsG0180004975.01.T01 AT4G04555 48.387 62 32 0 43 104 10 71 1.07e-11 61.2
MsG0180004975.01.T01 AT1G13300 56.364 55 24 0 47 101 181 235 2.07e-11 64.3
MsG0180004975.01.T01 AT2G03500 56.897 58 25 0 44 101 230 287 2.35e-11 64.3
MsG0180004975.01.T01 AT5G18240 30.000 190 95 7 79 244 1 176 6.06e-11 62.8
MsG0180004975.01.T01 AT5G44190 55.556 54 23 1 47 100 147 199 6.09e-11 63.2
MsG0180004975.01.T01 AT5G44190 55.556 54 23 1 47 100 147 199 7.40e-11 62.8
MsG0180004975.01.T01 AT1G25550 55.172 58 26 0 44 101 206 263 8.16e-11 62.4

Find 82 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATGCTTAGTAGCTTAATT+TGG 0.222202 1:+85102142 MsG0180004975.01.T01:three_prime_UTR
TTAATGCCTCCTTGACTTCA+TGG 0.229322 1:-85100906 None:intergenic
TTTCAGTACCAGGGCTTTCT+AGG 0.257313 1:-85100740 None:intergenic
CTGTTTCACTCCTAGTTTGT+AGG 0.277225 1:+85102026 MsG0180004975.01.T01:three_prime_UTR
GTCCAACGAAGACGAGGTTT+TGG 0.346766 1:-85098630 None:intergenic
TCATTTAAAGAGTCATCTTC+AGG 0.349057 1:+85100353 MsG0180004975.01.T01:CDS
ATGTTAGCTGATCAATTTAT+CGG 0.349878 1:+85101661 MsG0180004975.01.T01:CDS
CCTTGAGGCTGGAGAATATA+TGG 0.350192 1:-85101772 None:intergenic
CTATTCCTTGAGGATTGACT+TGG 0.360516 1:-85101960 None:intergenic
GATCACCTAGTGGGACAAAA+AGG 0.371348 1:+85101860 MsG0180004975.01.T01:CDS
ATGGTCCTCATGATCGCTTT+TGG 0.371640 1:-85100306 None:intergenic
TAAGCTGATGGGAATGTAAC+TGG 0.371910 1:+85102091 MsG0180004975.01.T01:three_prime_UTR
CATCAGAAGCTGGTAACTTA+GGG 0.373882 1:-85100770 None:intergenic
CAACAACAACACTTCCTTCA+TGG 0.381627 1:-85098530 None:intergenic
AGGAAGTGTTGTTGTTGTTC+AGG 0.385482 1:+85098536 MsG0180004975.01.T01:CDS
GCATCAGAAGCTGGTAACTT+AGG 0.386443 1:-85100771 None:intergenic
CTCAGAGGATTGACGCTAGA+AGG 0.389915 1:+85101838 MsG0180004975.01.T01:CDS
TTTATGCATTGCAGAAGTAT+AGG 0.395607 1:+85100464 MsG0180004975.01.T01:intron
GGAAATAGAGATGACCCATT+TGG 0.397223 1:-85098379 None:intergenic
CGTCAAACCCTTGACATTCA+TGG 0.400722 1:-85100325 None:intergenic
CCATGGTATCGCCTTTGATC+TGG 0.404208 1:+85101899 MsG0180004975.01.T01:CDS
AGATGCAGAACGGAGATATA+TGG 0.414090 1:+85101615 MsG0180004975.01.T01:CDS
AGTACTGAGCTAGGTGGAAA+TGG 0.415454 1:+85101730 MsG0180004975.01.T01:CDS
GGAGGCATTAAGAGCACAAA+TGG 0.440107 1:+85100918 MsG0180004975.01.T01:CDS
AGCAGTTAGCCCCTTGAGGC+TGG 0.448240 1:-85101783 None:intergenic
TACTCGTTTGCATCAGAAGC+TGG 0.451451 1:-85100780 None:intergenic
AATAGCAAGGTATGGAATGT+AGG 0.459706 1:+85101978 MsG0180004975.01.T01:CDS
TATATCTCCGTTCTGCATCT+TGG 0.482620 1:-85101612 None:intergenic
TTTAATTAATCCTACAAACT+AGG 0.484029 1:-85102036 None:intergenic
TATAGGCTCGGCAAGCAAGC+TGG 0.487525 1:+85100481 MsG0180004975.01.T01:CDS
TTTGACGAGGGATGCAAAGA+TGG 0.489601 1:+85100511 MsG0180004975.01.T01:CDS
CATATATTCTCCAGCCTCAA+GGG 0.510954 1:+85101773 MsG0180004975.01.T01:CDS
TTTCCACCTAGCTCAGTACT+TGG 0.511466 1:-85101727 None:intergenic
TGAGACTCTCAAGTGATGTT+AGG 0.512011 1:-85101819 None:intergenic
CCATATATTCTCCAGCCTCA+AGG 0.515434 1:+85101772 MsG0180004975.01.T01:CDS
CCTCAAGGAATAGCAAGGTA+TGG 0.523268 1:+85101970 MsG0180004975.01.T01:CDS
ATCCAAAACCTCGTCTTCGT+TGG 0.525904 1:+85098628 MsG0180004975.01.T01:CDS
CCTTCATGGTCATGACTATG+AGG 0.529329 1:-85098516 None:intergenic
CCATACCTTGCTATTCCTTG+AGG 0.535847 1:-85101970 None:intergenic
GTTGATGCCGTCACTCAACT+TGG 0.538069 1:+85098675 MsG0180004975.01.T01:CDS
TGATGTTAGGCAACTTTCTG+TGG 0.540828 1:-85101806 None:intergenic
CATCAGCTTAGATAAAAGAC+AGG 0.551223 1:-85102078 None:intergenic
GATGTTGGGCTTGGACTCCA+TGG 0.555467 1:+85101882 MsG0180004975.01.T01:CDS
GGTATTAGAGGAGAAAATGA+AGG 0.555527 1:-85098400 None:intergenic
GTGGAGCAGTTAGCCCCTTG+AGG 0.556661 1:-85101787 None:intergenic
GCTCGGCAAGCAAGCTGGAA+AGG 0.561523 1:+85100486 MsG0180004975.01.T01:CDS
GAAACTAACATGAGAACTCA+AGG 0.562013 1:+85101925 MsG0180004975.01.T01:CDS
TATTCCTTGAGGATTGACTT+GGG 0.573824 1:-85101959 None:intergenic
CGCTAGAAGGATCACCTAGT+GGG 0.576729 1:+85101851 MsG0180004975.01.T01:CDS
GAACTACCAAGTACTGAGCT+AGG 0.576911 1:+85101721 MsG0180004975.01.T01:CDS
TAGGTAGGACATTGTAAAGA+GGG 0.579450 1:+85101997 MsG0180004975.01.T01:exon
GTAGGTAGGACATTGTAAAG+AGG 0.582445 1:+85101996 MsG0180004975.01.T01:exon
TTAGTTTCACTCCAGATCAA+AGG 0.586045 1:-85101910 None:intergenic
TCGTATCTCCTAGAAAGCCC+TGG 0.590615 1:+85100732 MsG0180004975.01.T01:CDS
CATGAGGACCATGAATGTCA+AGG 0.591196 1:+85100317 MsG0180004975.01.T01:CDS
CTTACATGCTCTTTCAAGCA+TGG 0.593170 1:-85101638 None:intergenic
ATATAGGGGCCATGAAGTCA+AGG 0.600134 1:+85100897 MsG0180004975.01.T01:intron
GCAAGGTATGGAATGTAGGT+AGG 0.601220 1:+85101982 MsG0180004975.01.T01:exon
CAAGCTGCATTTACTAGTGG+AGG 0.602001 1:+85100951 MsG0180004975.01.T01:CDS
AAGCAAGCTGCATTTACTAG+TGG 0.606226 1:+85100948 MsG0180004975.01.T01:CDS
ATGAGGACCATGAATGTCAA+GGG 0.610152 1:+85100318 MsG0180004975.01.T01:CDS
CATCAACAAAGCGTTGGTGA+AGG 0.616368 1:-85098659 None:intergenic
TGACGGCATCAACAAAGCGT+TGG 0.618232 1:-85098665 None:intergenic
CCACACCAAAAGCGATCATG+AGG 0.624758 1:+85100301 MsG0180004975.01.T01:CDS
TCAATCCTCAAGGAATAGCA+AGG 0.627368 1:+85101965 MsG0180004975.01.T01:CDS
GATGCCGTCACTCAACTTGG+TGG 0.631084 1:+85098678 MsG0180004975.01.T01:CDS
AAGGGTCAGCAGCAGCAGCA+AGG 0.632848 1:-85098587 None:intergenic
CCTCATAGTCATGACCATGA+AGG 0.638338 1:+85098516 MsG0180004975.01.T01:CDS
TTAGCCCAAGTCAATCCTCA+AGG 0.640967 1:+85101955 MsG0180004975.01.T01:CDS
CCAGATCAAAGGCGATACCA+TGG 0.642100 1:-85101899 None:intergenic
GCATTGCAGAAGTATAGGCT+CGG 0.642536 1:+85100469 MsG0180004975.01.T01:intron
ATATATTCTCCAGCCTCAAG+GGG 0.645538 1:+85101774 MsG0180004975.01.T01:CDS
ATCAGAAGCTGGTAACTTAG+GGG 0.660581 1:-85100769 None:intergenic
TCAGAAGTGAGAACAAGACA+AGG 0.660603 1:-85098606 None:intergenic
AGGACCACCAAGTTGAGTGA+CGG 0.665127 1:-85098682 None:intergenic
TCAGTAGTCCAACGAAGACG+AGG 0.666354 1:-85098636 None:intergenic
AAATTCGCCAAGATGCAGAA+CGG 0.668751 1:+85101605 MsG0180004975.01.T01:CDS
ACATCACTTGAGAGTCTCAG+AGG 0.669427 1:+85101823 MsG0180004975.01.T01:CDS
ACGCTAGAAGGATCACCTAG+TGG 0.682794 1:+85101850 MsG0180004975.01.T01:CDS
CAGAAGTGAGAACAAGACAA+GGG 0.729677 1:-85098605 None:intergenic
TAGGGGCCATGAAGTCAAGG+AGG 0.733476 1:+85100900 MsG0180004975.01.T01:intron
CTACCAAGTACTGAGCTAGG+TGG 0.737567 1:+85101724 MsG0180004975.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCACAAAAAAAAAAATAT+GGG - Chr1:85099416-85099435 None:intergenic 10.0%
!! ATTTATCAATTTGAATTATA+TGG + Chr1:85100537-85100556 MsG0180004975.01.T01:intron 10.0%
!! TGATTAATTATGAAATATTA+TGG + Chr1:85101310-85101329 MsG0180004975.01.T01:intron 10.0%
!!! TAACTAATTGATTTTTTTTT+TGG + Chr1:85100704-85100723 MsG0180004975.01.T01:intron 10.0%
!! AAATTAACAAATTAACCAAA+TGG - Chr1:85098777-85098796 None:intergenic 15.0%
!! AATATAACATTATAGAGTTA+GGG + Chr1:85101086-85101105 MsG0180004975.01.T01:intron 15.0%
!! AATTAACAAATTAACCAAAT+GGG - Chr1:85098776-85098795 None:intergenic 15.0%
!! GATTCACAAAAAAAAAAATA+TGG - Chr1:85099417-85099436 None:intergenic 15.0%
!! TATTATTATGCGAATAATAT+AGG + Chr1:85100171-85100190 MsG0180004975.01.T01:intron 15.0%
!! TTCACAAAAAAAAAAATATG+GGG - Chr1:85099415-85099434 None:intergenic 15.0%
!!! AATTGATTTTTTTTTTGGAA+GGG + Chr1:85100709-85100728 MsG0180004975.01.T01:intron 15.0%
!!! ATATCATTGATTTACATTAT+CGG + Chr1:85099986-85100005 MsG0180004975.01.T01:intron 15.0%
!!! CAAAATCATTCAAATTTTAT+TGG + Chr1:85099708-85099727 MsG0180004975.01.T01:intron 15.0%
!!! GAAAATGAAATTTTTTTACT+AGG - Chr1:85099544-85099563 None:intergenic 15.0%
!!! TAATTGATTTTTTTTTTGGA+AGG + Chr1:85100708-85100727 MsG0180004975.01.T01:intron 15.0%
!!! TTAAGTGAAACTTTATATTT+TGG - Chr1:85099638-85099657 None:intergenic 15.0%
!! ACTTAAAATACAAAATCTCA+AGG + Chr1:85099652-85099671 MsG0180004975.01.T01:intron 20.0%
!! ATTAACAAATTAACCAAATG+GGG - Chr1:85098775-85098794 None:intergenic 20.0%
!! CAAATAAATCTATCTAAGAA+AGG - Chr1:85099351-85099370 None:intergenic 20.0%
!! CAATATAACATTATAGAGTT+AGG + Chr1:85101085-85101104 MsG0180004975.01.T01:intron 20.0%
!! GAAGTTAAGAATTATTATGT+TGG + Chr1:85101500-85101519 MsG0180004975.01.T01:intron 20.0%
!! TATCAATGTCAAACTAAAAA+TGG - Chr1:85098807-85098826 None:intergenic 20.0%
!! TTGACTCAAAATATGATTAA+GGG + Chr1:85099775-85099794 MsG0180004975.01.T01:intron 20.0%
!! TTTAATTAATCCTACAAACT+AGG - Chr1:85102039-85102058 None:intergenic 20.0%
!!! AACATGTTATTTTTCTTCTA+TGG - Chr1:85098480-85098499 None:intergenic 20.0%
!!! ACTAAATTTTGTTACTTTTC+TGG + Chr1:85098739-85098758 MsG0180004975.01.T01:intron 20.0%
!!! AGAAAAATAACATGTTTTCT+AGG + Chr1:85098484-85098503 MsG0180004975.01.T01:exon 20.0%
!!! ATTGACTCAAAATATGATTA+AGG + Chr1:85099774-85099793 MsG0180004975.01.T01:intron 20.0%
!!! GAAGAAAGATGAAATTTTTA+TGG - Chr1:85098424-85098443 None:intergenic 20.0%
!!! TATCATTGATTTACATTATC+GGG + Chr1:85099987-85100006 MsG0180004975.01.T01:intron 20.0%
!!! TATGATTTGTGAATATTTCT+AGG + Chr1:85100127-85100146 MsG0180004975.01.T01:intron 20.0%
!!! TCATTGTTTTTATTTCATCT+TGG + Chr1:85098981-85099000 MsG0180004975.01.T01:intron 20.0%
!!! TGAAATTTTTATGGTATTAG+AGG - Chr1:85098415-85098434 None:intergenic 20.0%
!!! TTTCTTCTTTTTCTTTTACT+GGG + Chr1:85098437-85098456 MsG0180004975.01.T01:five_prime_UTR 20.0%
!!! TTTTTGTTTTTGAAGAGTTT+TGG + Chr1:85098838-85098857 MsG0180004975.01.T01:intron 20.0%
! AAATGCTTAGTAGCTTAATT+TGG + Chr1:85102142-85102161 MsG0180004975.01.T01:three_prime_UTR 25.0%
! AGTGACATTAGAATTTGAAA+AGG - Chr1:85099683-85099702 None:intergenic 25.0%
! ATAATCCAAAGTCCAAATTA+GGG + Chr1:85099810-85099829 MsG0180004975.01.T01:intron 25.0%
! ATGTAACCAATCTATTGAAA+AGG - Chr1:85100619-85100638 None:intergenic 25.0%
! ATGTTAGCTGATCAATTTAT+CGG + Chr1:85101661-85101680 MsG0180004975.01.T01:CDS 25.0%
! CAAATACATAATTATTCGCA+TGG - Chr1:85099284-85099303 None:intergenic 25.0%
! GATAGATTTATTTGTACTTC+TGG + Chr1:85099357-85099376 MsG0180004975.01.T01:intron 25.0%
! GATATTCAGAAAAATTCTGA+AGG - Chr1:85099971-85099990 None:intergenic 25.0%
! GTAGAAGTTAAGAATTATTG+TGG + Chr1:85101558-85101577 MsG0180004975.01.T01:intron 25.0%
! GTTATATAGATTCTGTAGTA+TGG + Chr1:85101171-85101190 MsG0180004975.01.T01:intron 25.0%
! TAGTTGAAATTATTGAAGCT+AGG + Chr1:85098872-85098891 MsG0180004975.01.T01:intron 25.0%
! TCCAAATTAGGGTTTATAAA+CGG + Chr1:85099821-85099840 MsG0180004975.01.T01:intron 25.0%
! TTGTGATTCTGACAAATTTA+TGG + Chr1:85099056-85099075 MsG0180004975.01.T01:intron 25.0%
!! AATATTTTGCTTACTATCCA+TGG + Chr1:85099311-85099330 MsG0180004975.01.T01:intron 25.0%
!! ATTCTTTTTACTGTAGTTTG+TGG + Chr1:85101437-85101456 MsG0180004975.01.T01:intron 25.0%
!! ATTTGAGATACCAATCAAAA+TGG - Chr1:85101036-85101055 None:intergenic 25.0%
!! CTTTCTTCTTTTTCTTTTAC+TGG + Chr1:85098436-85098455 MsG0180004975.01.T01:five_prime_UTR 25.0%
!! TAAGAATTTCATTGTTTCTC+TGG + Chr1:85100801-85100820 MsG0180004975.01.T01:intron 25.0%
!! TAGAATCCTTTTCAATAGAT+TGG + Chr1:85100610-85100629 MsG0180004975.01.T01:intron 25.0%
!! TTATTTTCTCACTTTGTAGT+GGG + Chr1:85100090-85100109 MsG0180004975.01.T01:intron 25.0%
!!! AACTTTATATTTTGGTTGGT+TGG - Chr1:85099630-85099649 None:intergenic 25.0%
!!! AATCATTGCTGTGTTTTTTA+CGG + Chr1:85102182-85102201 MsG0180004975.01.T01:three_prime_UTR 25.0%
!!! ACATTGTCTTTTATTTGTGA+TGG + Chr1:85100054-85100073 MsG0180004975.01.T01:intron 25.0%
!!! AGAATTATTATGTTGGTAAC+TGG + Chr1:85101507-85101526 MsG0180004975.01.T01:intron 25.0%
!!! ATCATTGATTTACATTATCG+GGG + Chr1:85099988-85100007 MsG0180004975.01.T01:intron 25.0%
!!! GTGAAACTTTATATTTTGGT+TGG - Chr1:85099634-85099653 None:intergenic 25.0%
!!! TGTTTGTAATTTTAACCTGT+TGG + Chr1:85100658-85100677 MsG0180004975.01.T01:intron 25.0%
!!! TTATTGTAGACCATTTTGAT+TGG + Chr1:85101023-85101042 MsG0180004975.01.T01:intron 25.0%
!!! TTCGATCATTTTTTGACAAT+AGG - Chr1:85101117-85101136 None:intergenic 25.0%
!!! TTGGTAGTTCTTGAAATTTT+TGG - Chr1:85101711-85101730 None:intergenic 25.0%
!!! TTTATTTTCTCACTTTGTAG+TGG + Chr1:85100089-85100108 MsG0180004975.01.T01:intron 25.0%
!!! TTTTTGAAGAGTTTTGGTTT+TGG + Chr1:85098844-85098863 MsG0180004975.01.T01:intron 25.0%
AAATGATCGAATCTCAACTT+AGG + Chr1:85101126-85101145 MsG0180004975.01.T01:intron 30.0%
AACCTGTTGGATATTATCTA+TGG + Chr1:85100671-85100690 MsG0180004975.01.T01:intron 30.0%
AACTCTTCAAATGCATCTAT+TGG + Chr1:85100235-85100254 MsG0180004975.01.T01:intron 30.0%
AAGAATTATTGTGGTATTGC+AGG + Chr1:85101567-85101586 MsG0180004975.01.T01:intron 30.0%
AAGTGTCAATTCAGACATAA+AGG - Chr1:85100843-85100862 None:intergenic 30.0%
ACCGTTTATAAACCCTAATT+TGG - Chr1:85099825-85099844 None:intergenic 30.0%
ACTAGTAAGTACAACATCTA+GGG + Chr1:85099140-85099159 MsG0180004975.01.T01:intron 30.0%
ACTTTGGATTATGACTGATT+TGG - Chr1:85099802-85099821 None:intergenic 30.0%
AGTGTCAATTCAGACATAAA+GGG - Chr1:85100842-85100861 None:intergenic 30.0%
ATAAACCCTAATTTGGACTT+TGG - Chr1:85099818-85099837 None:intergenic 30.0%
CAATGTCATGTCATATATAG+GGG + Chr1:85100883-85100902 MsG0180004975.01.T01:intron 30.0%
CATAATCCAAAGTCCAAATT+AGG + Chr1:85099809-85099828 MsG0180004975.01.T01:intron 30.0%
CATTTGAAGAGTTTATCAGA+TGG - Chr1:85100228-85100247 None:intergenic 30.0%
CCTCTCTAACTCTATTTATT+GGG + Chr1:85100194-85100213 MsG0180004975.01.T01:intron 30.0%
CTCTCTAACTCTATTTATTG+GGG + Chr1:85100195-85100214 MsG0180004975.01.T01:intron 30.0%
GAAATTATTGAAGCTAGGAA+AGG + Chr1:85098877-85098896 MsG0180004975.01.T01:intron 30.0%
GCAATGTCATGTCATATATA+GGG + Chr1:85100882-85100901 MsG0180004975.01.T01:intron 30.0%
GTTTAACACAATTAGAACGT+GGG + Chr1:85099162-85099181 MsG0180004975.01.T01:intron 30.0%
TCATTTAAAGAGTCATCTTC+AGG + Chr1:85100353-85100372 MsG0180004975.01.T01:CDS 30.0%
TGCAATGTCATGTCATATAT+AGG + Chr1:85100881-85100900 MsG0180004975.01.T01:intron 30.0%
TGGTATTGTAAGTAGATTGT+GGG + Chr1:85101393-85101412 MsG0180004975.01.T01:intron 30.0%
TTGACATTGATAGAGAAGAA+TGG + Chr1:85098815-85098834 MsG0180004975.01.T01:intron 30.0%
TTGGTATTGTAAGTAGATTG+TGG + Chr1:85101392-85101411 MsG0180004975.01.T01:intron 30.0%
! ATGTTTTATCCCACTAAGTA+GGG - Chr1:85099485-85099504 None:intergenic 30.0%
! ATTTGTTGCAAATTGCTGTT+TGG + Chr1:85098938-85098957 MsG0180004975.01.T01:intron 30.0%
! TGTCTTTTATCTAAGCTGAT+GGG + Chr1:85102080-85102099 MsG0180004975.01.T01:three_prime_UTR 30.0%
! TTCTTTTTCTTTTACTGGGT+TGG + Chr1:85098441-85098460 MsG0180004975.01.T01:five_prime_UTR 30.0%
! TTTATGCATTGCAGAAGTAT+AGG + Chr1:85100464-85100483 MsG0180004975.01.T01:intron 30.0%
!! ATTACTAAAAGCATTCTCCT+CGG - Chr1:85099894-85099913 None:intergenic 30.0%
!! TTGTCTTTTATTTGTGATGG+TGG + Chr1:85100057-85100076 MsG0180004975.01.T01:intron 30.0%
!! TTTGTTGCAAATTGCTGTTT+GGG + Chr1:85098939-85098958 MsG0180004975.01.T01:intron 30.0%
!!! ATCATTGCTGTGTTTTTTAC+GGG + Chr1:85102183-85102202 MsG0180004975.01.T01:three_prime_UTR 30.0%
!!! TTGGTTTTTAGTGGAAAAAG+TGG - Chr1:85099611-85099630 None:intergenic 30.0%
AATAGCAAGGTATGGAATGT+AGG + Chr1:85101978-85101997 MsG0180004975.01.T01:CDS 35.0%
AGCCATAGATAATATCCAAC+AGG - Chr1:85100676-85100695 None:intergenic 35.0%
CACTAGTAAGTACAACATCT+AGG + Chr1:85099139-85099158 MsG0180004975.01.T01:intron 35.0%
CATCAGCTTAGATAAAAGAC+AGG - Chr1:85102081-85102100 None:intergenic 35.0%
CCATGCTAAGAAAATACCAA+AGG - Chr1:85099851-85099870 None:intergenic 35.0%
CCCAATAAATAGAGTTAGAG+AGG - Chr1:85100197-85100216 None:intergenic 35.0%
CTAGATGTTGTACTTACTAG+TGG - Chr1:85099141-85099160 None:intergenic 35.0%
GAAACTAACATGAGAACTCA+AGG + Chr1:85101925-85101944 MsG0180004975.01.T01:CDS 35.0%
GAAATGAGTTAGTTACTGGT+AGG - Chr1:85098705-85098724 None:intergenic 35.0%
GAGAGAAATGAGTTAGTTAC+TGG - Chr1:85098709-85098728 None:intergenic 35.0%
GCCTCTCTAACTCTATTTAT+TGG + Chr1:85100193-85100212 MsG0180004975.01.T01:intron 35.0%
GGTATTAGAGGAGAAAATGA+AGG - Chr1:85098403-85098422 None:intergenic 35.0%
GGTTTAACACAATTAGAACG+TGG + Chr1:85099161-85099180 MsG0180004975.01.T01:intron 35.0%
GTGAATTTGTAAAAGCTACG+AGG - Chr1:85099028-85099047 None:intergenic 35.0%
GTTTATAAACGGTACTCCTT+TGG + Chr1:85099832-85099851 MsG0180004975.01.T01:intron 35.0%
TAACTCTTCACAGTTTCACT+TGG - Chr1:85101266-85101285 None:intergenic 35.0%
TAGGTAGGACATTGTAAAGA+GGG + Chr1:85101997-85102016 MsG0180004975.01.T01:exon 35.0%
TATGGAAAGTAGATCAGAGA+AGG + Chr1:85101189-85101208 MsG0180004975.01.T01:intron 35.0%
TCTTGGATTTGTCAGAATCA+TGG + Chr1:85098998-85099017 MsG0180004975.01.T01:intron 35.0%
TGACATTGCAATTCTCAGTT+TGG - Chr1:85100871-85100890 None:intergenic 35.0%
TGTGAAGAGTTAGAGGTTAA+TGG + Chr1:85101274-85101293 MsG0180004975.01.T01:intron 35.0%
TTAGTTTCACTCCAGATCAA+AGG - Chr1:85101913-85101932 None:intergenic 35.0%
TTGAAGAGTTTATCAGATGG+AGG - Chr1:85100225-85100244 None:intergenic 35.0%
! AGCTGTTCGATCAATTTTAG+AGG - Chr1:85099738-85099757 None:intergenic 35.0%
! ATTTTCTTAGCATGGTACCA+TGG + Chr1:85099856-85099875 MsG0180004975.01.T01:intron 35.0%
! CATGTTTTATCCCACTAAGT+AGG - Chr1:85099486-85099505 None:intergenic 35.0%
! CCTTTGGTATTTTCTTAGCA+TGG + Chr1:85099848-85099867 MsG0180004975.01.T01:intron 35.0%
! CTGTCTTTTATCTAAGCTGA+TGG + Chr1:85102079-85102098 MsG0180004975.01.T01:three_prime_UTR 35.0%
! CTTTTGCCTTTTTCTGTCTT+TGG - Chr1:85101227-85101246 None:intergenic 35.0%
! TATTCCTTGAGGATTGACTT+GGG - Chr1:85101962-85101981 None:intergenic 35.0%
! TGGTAGCTAATGAGTGATTT+TGG + Chr1:85099388-85099407 MsG0180004975.01.T01:intron 35.0%
! TGTTGTTTGATCTGTGTATC+CGG + Chr1:85101333-85101352 MsG0180004975.01.T01:intron 35.0%
! TTTTTCTGTCTTTGGCGATT+GGG - Chr1:85101219-85101238 None:intergenic 35.0%
!!! CACCACTTTTTCTTCCAAAT+GGG + Chr1:85098365-85098384 MsG0180004975.01.T01:five_prime_UTR 35.0%
!!! TCACCACTTTTTCTTCCAAA+TGG + Chr1:85098364-85098383 MsG0180004975.01.T01:five_prime_UTR 35.0%
!!! TTTGGTTGGTTGGTTTTTAG+TGG - Chr1:85099620-85099639 None:intergenic 35.0%
AAATTCGCCAAGATGCAGAA+CGG + Chr1:85101605-85101624 MsG0180004975.01.T01:CDS 40.0%
AAGCAAGCTGCATTTACTAG+TGG + Chr1:85100948-85100967 MsG0180004975.01.T01:CDS 40.0%
AGATGCAGAACGGAGATATA+TGG + Chr1:85101615-85101634 MsG0180004975.01.T01:CDS 40.0%
AGTGGGACAAAAAGGATGTT+GGG + Chr1:85101868-85101887 MsG0180004975.01.T01:CDS 40.0%
ATATATTCTCCAGCCTCAAG+GGG + Chr1:85101774-85101793 MsG0180004975.01.T01:CDS 40.0%
ATCAGAAGCTGGTAACTTAG+GGG - Chr1:85100772-85100791 None:intergenic 40.0%
ATGAGGACCATGAATGTCAA+GGG + Chr1:85100318-85100337 MsG0180004975.01.T01:CDS 40.0%
CAACAACAACACTTCCTTCA+TGG - Chr1:85098533-85098552 None:intergenic 40.0%
CAATCGCCAAAGACAGAAAA+AGG + Chr1:85101218-85101237 MsG0180004975.01.T01:intron 40.0%
CAGAAGTGAGAACAAGACAA+GGG - Chr1:85098608-85098627 None:intergenic 40.0%
CATATATTCTCCAGCCTCAA+GGG + Chr1:85101773-85101792 MsG0180004975.01.T01:CDS 40.0%
CATCAGAAGCTGGTAACTTA+GGG - Chr1:85100773-85100792 None:intergenic 40.0%
CCAAGCATTATCCACTTGAT+CGG - Chr1:85101359-85101378 None:intergenic 40.0%
CTATTCCTTGAGGATTGACT+TGG - Chr1:85101963-85101982 None:intergenic 40.0%
CTTACATGCTCTTTCAAGCA+TGG - Chr1:85101641-85101660 None:intergenic 40.0%
GAATCTCAACTTAGGTGGTT+TGG + Chr1:85101134-85101153 MsG0180004975.01.T01:intron 40.0%
GACCCATTTGGAAGAAAAAG+TGG - Chr1:85098370-85098389 None:intergenic 40.0%
GACCTTGTTAAGTGCATCTT+TGG - Chr1:85099087-85099106 None:intergenic 40.0%
GCTTACTATCCATGGACATA+TGG + Chr1:85099319-85099338 MsG0180004975.01.T01:intron 40.0%
GGAAATAGAGATGACCCATT+TGG - Chr1:85098382-85098401 None:intergenic 40.0%
GTAGGTAGGACATTGTAAAG+AGG + Chr1:85101996-85102015 MsG0180004975.01.T01:exon 40.0%
GTGAAACTGTGAAGAGTTAG+AGG + Chr1:85101267-85101286 MsG0180004975.01.T01:intron 40.0%
GTTCAACCAAGAAAGCTATG+AGG - Chr1:85100020-85100039 None:intergenic 40.0%
TAACACAATTAGAACGTGGG+AGG + Chr1:85099165-85099184 MsG0180004975.01.T01:intron 40.0%
TAAGCTGATGGGAATGTAAC+TGG + Chr1:85102091-85102110 MsG0180004975.01.T01:three_prime_UTR 40.0%
TAGTGGGACAAAAAGGATGT+TGG + Chr1:85101867-85101886 MsG0180004975.01.T01:CDS 40.0%
TATAGCTGACCCTACTTAGT+GGG + Chr1:85099473-85099492 MsG0180004975.01.T01:intron 40.0%
TATATCTCCGTTCTGCATCT+TGG - Chr1:85101615-85101634 None:intergenic 40.0%
TCAATCCTCAAGGAATAGCA+AGG + Chr1:85101965-85101984 MsG0180004975.01.T01:CDS 40.0%
TCAGAAGTGAGAACAAGACA+AGG - Chr1:85098609-85098628 None:intergenic 40.0%
TGAGACTCTCAAGTGATGTT+AGG - Chr1:85101822-85101841 None:intergenic 40.0%
TGATCGAATCTCAACTTAGG+TGG + Chr1:85101129-85101148 MsG0180004975.01.T01:intron 40.0%
TGATGTTAGGCAACTTTCTG+TGG - Chr1:85101809-85101828 None:intergenic 40.0%
TGCCAAAGATGCACTTAACA+AGG + Chr1:85099082-85099101 MsG0180004975.01.T01:intron 40.0%
TTAATGCCTCCTTGACTTCA+TGG - Chr1:85100909-85100928 None:intergenic 40.0%
TTCAGTCCTCATAGCTTTCT+TGG + Chr1:85100011-85100030 MsG0180004975.01.T01:intron 40.0%
TTGTACTTCTGGTCTCTCTA+TGG + Chr1:85099368-85099387 MsG0180004975.01.T01:intron 40.0%
! AACATCCTTTTTGTCCCACT+AGG - Chr1:85101868-85101887 None:intergenic 40.0%
! CTGTTTCACTCCTAGTTTGT+AGG + Chr1:85102026-85102045 MsG0180004975.01.T01:three_prime_UTR 40.0%
! CTTTTTCTGTCTTTGGCGAT+TGG - Chr1:85101220-85101239 None:intergenic 40.0%
!! AGGAAGTGTTGTTGTTGTTC+AGG + Chr1:85098536-85098555 MsG0180004975.01.T01:CDS 40.0%
!!! GCTTGGCTGTTTTTGTTGAT+TGG + Chr1:85101373-85101392 MsG0180004975.01.T01:intron 40.0%
ACATCACTTGAGAGTCTCAG+AGG + Chr1:85101823-85101842 MsG0180004975.01.T01:CDS 45.0%
AGGACAGTACCATATGTCCA+TGG - Chr1:85099331-85099350 None:intergenic 45.0%
ATATAGGGGCCATGAAGTCA+AGG + Chr1:85100897-85100916 MsG0180004975.01.T01:intron 45.0%
ATCCAAAACCTCGTCTTCGT+TGG + Chr1:85098628-85098647 MsG0180004975.01.T01:CDS 45.0%
ATTAAGTCCCATGTGGGAGA+AGG + Chr1:85099929-85099948 MsG0180004975.01.T01:intron 45.0%
ATTAGAACGTGGGAGGTTTG+AGG + Chr1:85099172-85099191 MsG0180004975.01.T01:intron 45.0%
CAAGCTGCATTTACTAGTGG+AGG + Chr1:85100951-85100970 MsG0180004975.01.T01:CDS 45.0%
CATGAGGACCATGAATGTCA+AGG + Chr1:85100317-85100336 MsG0180004975.01.T01:CDS 45.0%
CATGGGACTTAATGAGGTCA+AGG - Chr1:85099922-85099941 None:intergenic 45.0%
CCATATATTCTCCAGCCTCA+AGG + Chr1:85101772-85101791 MsG0180004975.01.T01:CDS 45.0%
CCGATCAAGTGGATAATGCT+TGG + Chr1:85101356-85101375 MsG0180004975.01.T01:intron 45.0%
CCTCAAGGAATAGCAAGGTA+TGG + Chr1:85101970-85101989 MsG0180004975.01.T01:CDS 45.0%
CCTCATAGTCATGACCATGA+AGG + Chr1:85098516-85098535 MsG0180004975.01.T01:CDS 45.0%
CCTTCATGGTCATGACTATG+AGG - Chr1:85098519-85098538 None:intergenic 45.0%
CCTTGAGGCTGGAGAATATA+TGG - Chr1:85101775-85101794 None:intergenic 45.0%
CGTCAAACCCTTGACATTCA+TGG - Chr1:85100328-85100347 None:intergenic 45.0%
CTATAGCTGACCCTACTTAG+TGG + Chr1:85099472-85099491 MsG0180004975.01.T01:intron 45.0%
GACAAAAAGGATGTTGGGCT+TGG + Chr1:85101873-85101892 MsG0180004975.01.T01:CDS 45.0%
GACCTCATTAAGTCCCATGT+GGG + Chr1:85099923-85099942 MsG0180004975.01.T01:intron 45.0%
GATCACCTAGTGGGACAAAA+AGG + Chr1:85101860-85101879 MsG0180004975.01.T01:CDS 45.0%
GCAAGGTATGGAATGTAGGT+AGG + Chr1:85101982-85102001 MsG0180004975.01.T01:exon 45.0%
GCATCAGAAGCTGGTAACTT+AGG - Chr1:85100774-85100793 None:intergenic 45.0%
GCTCATAAACATGTCTCGTC+TGG - Chr1:85101060-85101079 None:intergenic 45.0%
TACTCGTTTGCATCAGAAGC+TGG - Chr1:85100783-85100802 None:intergenic 45.0%
TGACCTCATTAAGTCCCATG+TGG + Chr1:85099922-85099941 MsG0180004975.01.T01:intron 45.0%
TTAAGTCCCATGTGGGAGAA+GGG + Chr1:85099930-85099949 MsG0180004975.01.T01:intron 45.0%
TTAGCCCAAGTCAATCCTCA+AGG + Chr1:85101955-85101974 MsG0180004975.01.T01:CDS 45.0%
TTTCAGTACCAGGGCTTTCT+AGG - Chr1:85100743-85100762 None:intergenic 45.0%
TTTCCACCTAGCTCAGTACT+TGG - Chr1:85101730-85101749 None:intergenic 45.0%
TTTGACGAGGGATGCAAAGA+TGG + Chr1:85100511-85100530 MsG0180004975.01.T01:CDS 45.0%
! AGTACTGAGCTAGGTGGAAA+TGG + Chr1:85101730-85101749 MsG0180004975.01.T01:CDS 45.0%
! ATGGTCCTCATGATCGCTTT+TGG - Chr1:85100309-85100328 None:intergenic 45.0%
! GCATTGCAGAAGTATAGGCT+CGG + Chr1:85100469-85100488 MsG0180004975.01.T01:intron 45.0%
! GGGATGAGTTTTCAGTACCA+GGG - Chr1:85100752-85100771 None:intergenic 45.0%
! TTAGGTGGTTTGGACATGTG+TGG + Chr1:85101144-85101163 MsG0180004975.01.T01:intron 45.0%
!! AGCTGGAAAGGATTTTGACG+AGG + Chr1:85100498-85100517 MsG0180004975.01.T01:CDS 45.0%
!! CATCAACAAAGCGTTGGTGA+AGG - Chr1:85098662-85098681 None:intergenic 45.0%
!! CCATACCTTGCTATTCCTTG+AGG - Chr1:85101973-85101992 None:intergenic 45.0%
!! GAACTACCAAGTACTGAGCT+AGG + Chr1:85101721-85101740 MsG0180004975.01.T01:CDS 45.0%
!! GCTGGAAAGGATTTTGACGA+GGG + Chr1:85100499-85100518 MsG0180004975.01.T01:CDS 45.0%
!! GGAGGCATTAAGAGCACAAA+TGG + Chr1:85100918-85100937 MsG0180004975.01.T01:CDS 45.0%
!!! TGGTTTTGATGCACCCCATT+TGG + Chr1:85098759-85098778 MsG0180004975.01.T01:intron 45.0%
ACGCTAGAAGGATCACCTAG+TGG + Chr1:85101850-85101869 MsG0180004975.01.T01:CDS 50.0%
CCACACCAAAAGCGATCATG+AGG + Chr1:85100301-85100320 MsG0180004975.01.T01:CDS 50.0%
CCAGATCAAAGGCGATACCA+TGG - Chr1:85101902-85101921 None:intergenic 50.0%
CCATGGTATCGCCTTTGATC+TGG + Chr1:85101899-85101918 MsG0180004975.01.T01:CDS 50.0%
CGCTAGAAGGATCACCTAGT+GGG + Chr1:85101851-85101870 MsG0180004975.01.T01:CDS 50.0%
CTCAGAGGATTGACGCTAGA+AGG + Chr1:85101838-85101857 MsG0180004975.01.T01:CDS 50.0%
CTCCCACATGGGACTTAATG+AGG - Chr1:85099928-85099947 None:intergenic 50.0%
GCATTATCCACTTGATCGGC+CGG - Chr1:85101355-85101374 None:intergenic 50.0%
GTTGATGCCGTCACTCAACT+TGG + Chr1:85098675-85098694 MsG0180004975.01.T01:CDS 50.0%
TAAGTCCCATGTGGGAGAAG+GGG + Chr1:85099931-85099950 MsG0180004975.01.T01:intron 50.0%
TCAGTAGTCCAACGAAGACG+AGG - Chr1:85098639-85098658 None:intergenic 50.0%
TCGTATCTCCTAGAAAGCCC+TGG + Chr1:85100732-85100751 MsG0180004975.01.T01:CDS 50.0%
TGACGGCATCAACAAAGCGT+TGG - Chr1:85098668-85098687 None:intergenic 50.0%
! AGGACCACCAAGTTGAGTGA+CGG - Chr1:85098685-85098704 None:intergenic 50.0%
! GGGGATGAGTTTTCAGTACC+AGG - Chr1:85100753-85100772 None:intergenic 50.0%
! GTCCAACGAAGACGAGGTTT+TGG - Chr1:85098633-85098652 None:intergenic 50.0%
!! CCTCATGATCGCTTTTGGTG+TGG - Chr1:85100304-85100323 None:intergenic 50.0%
!! CTACCAAGTACTGAGCTAGG+TGG + Chr1:85101724-85101743 MsG0180004975.01.T01:CDS 50.0%
CATGGTCTACGATTGAGCCG+AGG + Chr1:85099874-85099893 MsG0180004975.01.T01:intron 55.0%
CTCGGCTCAATCGTAGACCA+TGG - Chr1:85099876-85099895 None:intergenic 55.0%
GAAGACCCCTTCTCCCACAT+GGG - Chr1:85099939-85099958 None:intergenic 55.0%
GATGCCGTCACTCAACTTGG+TGG + Chr1:85098678-85098697 MsG0180004975.01.T01:CDS 55.0%
GATGTTGGGCTTGGACTCCA+TGG + Chr1:85101882-85101901 MsG0180004975.01.T01:CDS 55.0%
TAGGGGCCATGAAGTCAAGG+AGG + Chr1:85100900-85100919 MsG0180004975.01.T01:intron 55.0%
TATAGGCTCGGCAAGCAAGC+TGG + Chr1:85100481-85100500 MsG0180004975.01.T01:CDS 55.0%
TGAAGACCCCTTCTCCCACA+TGG - Chr1:85099940-85099959 None:intergenic 55.0%
TGTGTATCCGGCCGATCAAG+TGG + Chr1:85101345-85101364 MsG0180004975.01.T01:intron 55.0%
! GGTGGTTTGGACATGTGTGG+AGG + Chr1:85101147-85101166 MsG0180004975.01.T01:intron 55.0%
AAGGGTCAGCAGCAGCAGCA+AGG - Chr1:85098590-85098609 None:intergenic 60.0%
AGCAGTTAGCCCCTTGAGGC+TGG - Chr1:85101786-85101805 None:intergenic 60.0%
GCTCGGCAAGCAAGCTGGAA+AGG + Chr1:85100486-85100505 MsG0180004975.01.T01:CDS 60.0%
GTGGAGCAGTTAGCCCCTTG+AGG - Chr1:85101790-85101809 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 85098361 85102211 85098361 ID=MsG0180004975.01;Name=MsG0180004975.01
Chr1 mRNA 85098361 85102211 85098361 ID=MsG0180004975.01.T01;Parent=MsG0180004975.01;Name=MsG0180004975.01.T01;_AED=0.46;_eAED=0.46;_QI=134|1|1|1|1|1|6|212|298
Chr1 exon 85098361 85098708 85098361 ID=MsG0180004975.01.T01:exon:9511;Parent=MsG0180004975.01.T01
Chr1 exon 85100298 85100374 85100298 ID=MsG0180004975.01.T01:exon:9512;Parent=MsG0180004975.01.T01
Chr1 exon 85100478 85100532 85100478 ID=MsG0180004975.01.T01:exon:9513;Parent=MsG0180004975.01.T01
Chr1 exon 85100730 85100799 85100730 ID=MsG0180004975.01.T01:exon:9514;Parent=MsG0180004975.01.T01
Chr1 exon 85100903 85100972 85100903 ID=MsG0180004975.01.T01:exon:9515;Parent=MsG0180004975.01.T01
Chr1 exon 85101589 85102211 85101589 ID=MsG0180004975.01.T01:exon:9516;Parent=MsG0180004975.01.T01
Chr1 five_prime_UTR 85098361 85098494 85098361 ID=MsG0180004975.01.T01:five_prime_utr;Parent=MsG0180004975.01.T01
Chr1 CDS 85098495 85098708 85098495 ID=MsG0180004975.01.T01:cds;Parent=MsG0180004975.01.T01
Chr1 CDS 85100298 85100374 85100298 ID=MsG0180004975.01.T01:cds;Parent=MsG0180004975.01.T01
Chr1 CDS 85100478 85100532 85100478 ID=MsG0180004975.01.T01:cds;Parent=MsG0180004975.01.T01
Chr1 CDS 85100730 85100799 85100730 ID=MsG0180004975.01.T01:cds;Parent=MsG0180004975.01.T01
Chr1 CDS 85100903 85100972 85100903 ID=MsG0180004975.01.T01:cds;Parent=MsG0180004975.01.T01
Chr1 CDS 85101589 85101999 85101589 ID=MsG0180004975.01.T01:cds;Parent=MsG0180004975.01.T01
Chr1 three_prime_UTR 85102000 85102211 85102000 ID=MsG0180004975.01.T01:three_prime_utr;Parent=MsG0180004975.01.T01
Gene Sequence

>MsG0180004975.01.T01

ATGTTTTCTAGGTTGATACGTCCTCATAGTCATGACCATGAAGGAAGTGTTGTTGTTGTTCAGGAAGATACAAATCATCATCTTCACACTCACCTTGCTGCTGCTGCTGACCCTTGTCTTGTTCTCACTTCTGATCCAAAACCTCGTCTTCGTTGGACTACTGACCTTCACCAACGCTTTGTTGATGCCGTCACTCAACTTGGTGGTCCTACCAAAGCCACACCAAAAGCGATCATGAGGACCATGAATGTCAAGGGTTTGACGCTCTATCATTTAAAGAGTCATCTTCAGAAGTATAGGCTCGGCAAGCAAGCTGGAAAGGATTTTGACGAGGGATGCAAAGATGGGTCGTATCTCCTAGAAAGCCCTGGTACTGAAAACTCATCCCCTAAGTTACCAGCTTCTGATGCAAACGAGGGCCATGAAGTCAAGGAGGCATTAAGAGCACAAATGGAAGTGCAAAGCAAGCTGCATTTACTAGTGGAGGCAGAGAAGCACTTGCAAATTCGCCAAGATGCAGAACGGAGATATATGGCCATGCTTGAAAGAGCATGTAAGATGTTAGCTGATCAATTTATCGGTGATACAACTATAGACACAGACATCCAAAAATTTCAAGAACTACCAAGTACTGAGCTAGGTGGAAATGGAATGCATATTTCAGAAGTACCATATATTCTCCAGCCTCAAGGGGCTAACTGCTCCACAGAAAGTTGCCTAACATCACTTGAGAGTCTCAGAGGATTGACGCTAGAAGGATCACCTAGTGGGACAAAAAGGATGTTGGGCTTGGACTCCATGGTATCGCCTTTGATCTGGAGTGAAACTAACATGAGAACTCAAGGCATTCACTTAGCCCAAGTCAATCCTCAAGGAATAGCAAGGTATGGAATGTAG

Protein sequence

>MsG0180004975.01.T01

MFSRLIRPHSHDHEGSVVVVQEDTNHHLHTHLAAAADPCLVLTSDPKPRLRWTTDLHQRFVDAVTQLGGPTKATPKAIMRTMNVKGLTLYHLKSHLQKYRLGKQAGKDFDEGCKDGSYLLESPGTENSSPKLPASDANEGHEVKEALRAQMEVQSKLHLLVEAEKHLQIRQDAERRYMAMLERACKMLADQFIGDTTIDTDIQKFQELPSTELGGNGMHISEVPYILQPQGANCSTESCLTSLESLRGLTLEGSPSGTKRMLGLDSMVSPLIWSETNMRTQGIHLAQVNPQGIARYGM*