AlfalfaGEDB | MsG0280010468.01

M. sativa cultivar ZhongmuNo.1 / MsG0280010468.01

KEGG: K11824
GO: GO:0005488 GO:0006886 GO:0016192 GO:0030117
PFAM: PF01602

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010468.01.T01	XP_016170150.1	84	600	37	5	1	541	1	600	0	1007
MsG0280010468.01.T01	XP_016170150.1	71.25	80	21	1	706	785	946	1023	4.74E-15	92.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010468.01.T01	Q8LPK4	93.723	462	29	0	3	464	1	462	0	911

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010468.01.T01	A0A444Y7G9	84.000	600	37	5	1	541	1	600	0.0	1007

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180001548.01	MsG0280010468.01	-0.812700	3.714653e-51	2.378255e-48
MsG0180003637.01	MsG0280010468.01	0.822333	2.505014e-53	2.090553e-50
MsG0180003763.01	MsG0280010468.01	0.862306	5.563609e-64	1.621736e-60
MsG0180004006.01	MsG0280010468.01	-0.823254	1.529627e-53	1.310158e-50
MsG0180004916.01	MsG0280010468.01	0.835895	1.285362e-56	1.593501e-53
MsG0180004954.01	MsG0280010468.01	0.805059	1.602758e-49	8.397299e-47
MsG0280006505.01	MsG0280010468.01	0.840728	7.301485e-58	1.049481e-54
MsG0280007207.01	MsG0280010468.01	0.805156	1.529591e-49	8.033931e-47
MsG0280007406.01	MsG0280010468.01	-0.806683	7.301313e-50	3.987748e-47
MsG0280010468.01	MsG0380015074.01	0.804308	2.299073e-49	1.181446e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010468.01.T01	MTR_2g084610	100.000	464	0	0	1	464	1	464	0.0	965
MsG0280010468.01.T01	MTR_2g084610	97.500	80	2	0	706	785	947	1026	7.96e-41	162
MsG0280010468.01.T01	MTR_2g084610	97.561	41	1	0	501	541	560	600	1.22e-16	85.1
MsG0280010468.01.T01	MTR_2g084610	86.111	36	5	0	675	710	823	858	7.65e-13	72.8
MsG0280010468.01.T01	MTR_5g034780	33.405	464	286	11	4	462	6	451	8.84e-73	255
MsG0280010468.01.T01	MTR_8g063690	33.114	456	283	10	12	462	13	451	3.18e-70	248
MsG0280010468.01.T01	MTR_8g072250	25.383	457	322	9	12	465	28	468	6.68e-49	187
MsG0280010468.01.T01	MTR_8g104380	22.986	422	276	12	29	440	36	418	1.53e-19	94.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010468.01.T01	AT5G22780	93.723	462	29	0	3	464	1	462	0.0	911
MsG0280010468.01.T01	AT5G22780	68.293	82	21	3	706	785	935	1013	1.69e-19	94.4
MsG0280010468.01.T01	AT5G22780	75.000	44	11	0	501	544	558	601	1.74e-13	75.1
MsG0280010468.01.T01	AT5G22780	93.723	462	29	0	3	464	1	462	0.0	911
MsG0280010468.01.T01	AT5G22780	68.293	82	21	3	706	785	935	1013	1.69e-19	94.4
MsG0280010468.01.T01	AT5G22780	75.000	44	11	0	501	544	558	601	1.74e-13	75.1
MsG0280010468.01.T01	AT5G22770	93.723	462	29	0	3	464	1	462	0.0	910
MsG0280010468.01.T01	AT5G22770	67.500	80	24	1	706	785	935	1012	1.09e-16	85.5
MsG0280010468.01.T01	AT5G22770	75.000	44	11	0	501	544	558	601	1.79e-13	75.1
MsG0280010468.01.T01	AT5G22770	93.723	462	29	0	3	464	1	462	0.0	910

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Find 236 sgRNAs with CRISPR-Local

Find 894 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAAGATAACGAATATT+TGG	0.224231	2:-70018025	None:intergenic
AAACCACGACTTTCTCAGAT+TGG	0.491745	2:+70015648	MsG0280010468.01.T01:CDS
AAACCTGAAGCCAGGGAGAT+GGG	0.501428	2:-70017016	None:intergenic
AAACTTTAGAGCGGCTTGCC+AGG	0.467888	2:+70016955	MsG0280010468.01.T01:CDS
AAAGATTATCCCAGGAAAAT+GGG	0.447176	2:+70021186	MsG0280010468.01.T01:CDS
AAAGCATGAACAGATATAAG+AGG	0.477658	2:-70022256	None:intergenic
AAATATTCGTTATCTTGGTT+TGG	0.367973	2:+70018027	MsG0280010468.01.T01:CDS
AAATCGTGAGCTAGGGCTGG+CGG	0.617017	2:+70024301	MsG0280010468.01.T01:three_prime_UTR
AAATTGAAGCTTTGCTCGCG+AGG	0.546694	2:+70011440	MsG0280010468.01.T01:five_prime_UTR
AAATTTACAAACCTGAAGCC+AGG	0.510147	2:-70017024	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACGAAAAGGTCAGTTA+GGG	+	Chr2:70011850-70011869	MsG0280010468.01.T01:intron	30.0%
AAAAAGAAATTCTAGTGGCA+TGG	-	Chr2:70014243-70014262	None:intergenic	30.0%
AAAAATCAAAGAGACCAACT+TGG	-	Chr2:70014719-70014738	None:intergenic	30.0%
AAAATTTGGATGCATCATTG+AGG	-	Chr2:70017267-70017286	None:intergenic	30.0%
AAACGAAAGAAAACATAGGA+AGG	-	Chr2:70012933-70012952	None:intergenic	30.0%
AAACTAAGCATGTGAATAGT+CGG	+	Chr2:70022676-70022695	MsG0280010468.01.T01:intron	30.0%
AAAGATTATCCCAGGAAAAT+GGG	+	Chr2:70021186-70021205	MsG0280010468.01.T01:CDS	30.0%
AAAGCATGAACAGATATAAG+AGG	-	Chr2:70022259-70022278	None:intergenic	30.0%
AACAATGATCTTCTGGTATT+TGG	-	Chr2:70017230-70017249	None:intergenic	30.0%
AACCAATGCCATAATAATCA+TGG	+	Chr2:70020794-70020813	MsG0280010468.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	70011408	70024611	70011408	ID=MsG0280010468.01;Name=MsG0280010468.01
Chr2	mRNA	70011408	70024611	70011408	ID=MsG0280010468.01.T01;Parent=MsG0280010468.01;Name=MsG0280010468.01.T01;_AED=0.39;_eAED=0.40;_QI=322\|0.77\|0.84\|1\|1\|1\|19\|413\|785
Chr2	exon	70011408	70011861	70011408	ID=MsG0280010468.01.T01:exon:26848;Parent=MsG0280010468.01.T01
Chr2	exon	70015319	70015450	70015319	ID=MsG0280010468.01.T01:exon:26849;Parent=MsG0280010468.01.T01
Chr2	exon	70015613	70015738	70015613	ID=MsG0280010468.01.T01:exon:26850;Parent=MsG0280010468.01.T01
Chr2	exon	70016495	70016557	70016495	ID=MsG0280010468.01.T01:exon:26851;Parent=MsG0280010468.01.T01
Chr2	exon	70016634	70016731	70016634	ID=MsG0280010468.01.T01:exon:26852;Parent=MsG0280010468.01.T01
Chr2	exon	70016827	70017034	70016827	ID=MsG0280010468.01.T01:exon:26853;Parent=MsG0280010468.01.T01
Chr2	exon	70017182	70017253	70017182	ID=MsG0280010468.01.T01:exon:26854;Parent=MsG0280010468.01.T01
Chr2	exon	70017332	70017424	70017332	ID=MsG0280010468.01.T01:exon:26855;Parent=MsG0280010468.01.T01
Chr2	exon	70017947	70018048	70017947	ID=MsG0280010468.01.T01:exon:26856;Parent=MsG0280010468.01.T01
Chr2	exon	70018276	70018373	70018276	ID=MsG0280010468.01.T01:exon:26857;Parent=MsG0280010468.01.T01
Chr2	exon	70018635	70018716	70018635	ID=MsG0280010468.01.T01:exon:26858;Parent=MsG0280010468.01.T01
Chr2	exon	70018874	70018962	70018874	ID=MsG0280010468.01.T01:exon:26859;Parent=MsG0280010468.01.T01
Chr2	exon	70019622	70019799	70019622	ID=MsG0280010468.01.T01:exon:26860;Parent=MsG0280010468.01.T01
Chr2	exon	70020585	70020734	70020585	ID=MsG0280010468.01.T01:exon:26861;Parent=MsG0280010468.01.T01
Chr2	exon	70021167	70021411	70021167	ID=MsG0280010468.01.T01:exon:26862;Parent=MsG0280010468.01.T01
Chr2	exon	70022185	70022347	70022185	ID=MsG0280010468.01.T01:exon:26863;Parent=MsG0280010468.01.T01
Chr2	exon	70022427	70022513	70022427	ID=MsG0280010468.01.T01:exon:26864;Parent=MsG0280010468.01.T01
Chr2	exon	70023877	70023956	70023877	ID=MsG0280010468.01.T01:exon:26865;Parent=MsG0280010468.01.T01
Chr2	exon	70024039	70024611	70024039	ID=MsG0280010468.01.T01:exon:26866;Parent=MsG0280010468.01.T01
Chr2	five_prime_UTR	70011408	70011729	70011408	ID=MsG0280010468.01.T01:five_prime_utr;Parent=MsG0280010468.01.T01
Chr2	CDS	70011730	70011861	70011730	ID=MsG0280010468.01.T01:cds;Parent=MsG0280010468.01.T01
Chr2	CDS	70015319	70015450	70015319	ID=MsG0280010468.01.T01:cds;Parent=MsG0280010468.01.T01
Chr2	CDS	70015613	70015738	70015613	ID=MsG0280010468.01.T01:cds;Parent=MsG0280010468.01.T01
Chr2	CDS	70016495	70016557	70016495	ID=MsG0280010468.01.T01:cds;Parent=MsG0280010468.01.T01
Chr2	CDS	70016634	70016731	70016634	ID=MsG0280010468.01.T01:cds;Parent=MsG0280010468.01.T01
Chr2	CDS	70016827	70017034	70016827	ID=MsG0280010468.01.T01:cds;Parent=MsG0280010468.01.T01
Chr2	CDS	70017182	70017253	70017182	ID=MsG0280010468.01.T01:cds;Parent=MsG0280010468.01.T01
Chr2	CDS	70017332	70017424	70017332	ID=MsG0280010468.01.T01:cds;Parent=MsG0280010468.01.T01
Chr2	CDS	70017947	70018048	70017947	ID=MsG0280010468.01.T01:cds;Parent=MsG0280010468.01.T01
Chr2	CDS	70018276	70018373	70018276	ID=MsG0280010468.01.T01:cds;Parent=MsG0280010468.01.T01
Chr2	CDS	70018635	70018716	70018635	ID=MsG0280010468.01.T01:cds;Parent=MsG0280010468.01.T01
Chr2	CDS	70018874	70018962	70018874	ID=MsG0280010468.01.T01:cds;Parent=MsG0280010468.01.T01
Chr2	CDS	70019622	70019799	70019622	ID=MsG0280010468.01.T01:cds;Parent=MsG0280010468.01.T01
Chr2	CDS	70020585	70020734	70020585	ID=MsG0280010468.01.T01:cds;Parent=MsG0280010468.01.T01
Chr2	CDS	70021167	70021411	70021167	ID=MsG0280010468.01.T01:cds;Parent=MsG0280010468.01.T01
Chr2	CDS	70022185	70022347	70022185	ID=MsG0280010468.01.T01:cds;Parent=MsG0280010468.01.T01
Chr2	CDS	70022427	70022513	70022427	ID=MsG0280010468.01.T01:cds;Parent=MsG0280010468.01.T01
Chr2	CDS	70023877	70023956	70023877	ID=MsG0280010468.01.T01:cds;Parent=MsG0280010468.01.T01
Chr2	CDS	70024039	70024198	70024039	ID=MsG0280010468.01.T01:cds;Parent=MsG0280010468.01.T01
Chr2	three_prime_UTR	70024199	70024611	70024199	ID=MsG0280010468.01.T01:three_prime_utr;Parent=MsG0280010468.01.T01

Gene Sequence

>MsG0280010468.01.T01

ATGGCGATGTCGGGGATGAGAGGACTTTCCGTGTTTATAAGCGACATACGCAATTGCCAGAACAAAGAACAAGAGCGTCTTCGTGTTGATAAAGAACTCGGCAATATTCGTACTCGCTTCAAAAACGAAAAGGCTTTGACTCCGTATGAGAAAAAGAAATATGTTTGGAAAATGCTTTACATATACATGCTTGGCTATGATGTGGATTTTGGTCACATGGAAGCTGTTTCTCTTATATCTGCTCCAAAGTATCCAGAAAAACAGGTTGGGTACATTGTAACATCAAGTTTGCTTAATGAAAACCACGACTTTCTCAGATTGGCCATAAATACCGTGCGTAATGATATCATTGGTCGCAATGAAACCTTCCAGTGCTTAGCATTGACTATGGTTGGAAATATTGGTGGCAGAGAATTTGCCGAGTCCTTAGCACCTGATGTACAGAAGTTGCTGTTATCTAGCAGCTGCAGACCCCTTGTGAGAAAAAAAGCCGCATTATGTTTGCTGCGACTGTACAGGAAAAATCCTGATGTTGTCAATGTAGACGGATGGGCGGATCGAATGGCTCAACTTTTGGATGAACGAGACCTTGGTGTTTTGACATCTTCTATGAGTCTTCTTGTTGCATTAGTATCGAACCAACACGAGGCATATTGGAGTTGCCTTCCTAAGTGTGTCAAAACTTTAGAGCGGCTTGCCAGGAATCAGGATATCCCACAAGAATACACTTACTATGGTATCCCATCTCCCTGGCTTCAGGTCAAAACAATGAGAGCTCTTCAGTATTTTCCTACCATTGAAGATCCAAATACCAGAAGATCATTGTTTGAGGTCCTACAAAGGATATTGATGGGAACTGATGTTGTGAAAAATGTCAACAAAAATAATGCTTCCCATGCTGTTCTTTTTGAAGCCCTTGCTCTGGTAATGCATCTTGATGCTGAAAAGGAGATGATGTCTCAATGTGTGGCTCTTCTTGGCAAATTTATTGCTGTCCGTGAACCAAATATTCGTTATCTTGGTTTGGAGAATATGACTAGAATGTTGATGGTTACAGATGTGCAAGATATCATAAAAAGACATCAAGCCCAGATTATTACCTCATTGAAGGATCCTGACATCAGTATTCGGAGGCGTGCTCTAGATTTGCTTTATGGCATGTGTGATGTTACAAATGCAAAGGATATCGTTGAAGAACTACTGCAGTATCTCAGCACAGCAGAGTTTGCAATGCGTGAAGAATTGTCACTTAAAGCAGCTATTCTAGCCGAGAAGTTTGCACCAGATCTTTCATGGTACGTTGACGTGATTCTTCAATTAATTGACAAGGCTGGGGATTTTGTTAGTGATGACATCTGGTTTCGAGTTGTACAGTTTGTTACAAACAACGAAGGACCTACAGGTCAGTTTGAAACTGAACTGATAGTGCTGATTCTTACTCGACACATCACTCACATGAATGTTATGTATTTGGTTTTTCTAAGCCACTCTCACTCTTTTAGATATGAAAGCTCGATTGAAGTTGAAATACAGCAACGAGCAGTTGAATATTTTGCATTAAGTAGAAAAGGTGCAGCCCTAATGGATATATTGGCTGAAATGCCTAAATTCCCGGAACGACAGGATGATATTTCAGCAGAACAAAGATTATCCCAGGAAAATGGGACTTTGAATCAAGTAGATTTCAGCAACCCTCTCCAGATCTCCTTGGTGATCTGTTGGGTCCTTTGGCTATTGAAGGCCCTCCTAGTAGCAGTGTCCACCTCAGCCAAGCTCAAATCCAGGAACGGAAGGGACTGTAGTCGATGCCACAGCCATAGTCCCTGTTGGGCAGGAGGCCAGTTCTGTGCAGGTACTTTGGTTGATCAATTGGCATTAAAGCAGAATGGAGAGCTCATCAAGGGCATCTTGTTCTTTCTTGGGGAACAAGAATACTTCTCCTCTTATATCTGTTCATGCTTTAATATTGCCTCCCGTCCATTTGAAAATGGAGCTCTCTCTAGTACCAGATACTATACCTCCCGGGCACAAGTGCAATGCCCACTTGAGATCACTAATTTGCACCCAAGCAGGGATGTTGCCGTTATTGACTTCTCATACAAGTTTGGTAACGATATGGCAAGAATTGAAACAGACCCAGCAGACAGAACCCAACTTCGAATGACGGTTGCTTCAGGGGACCCAACTCTAACATTTGAGCTGAAGGAATTCATCAAGGAACAATTAGTCAGTATCCCTATAGCATCTCGTATACCACCGACACATGCAGCTCCGATGTCTCCGGTGGCTCAACCAGCTAGTGCTCCTCCTCCTGCAGCATTGAATGATCCTGGGGCAGCGCTGGCTGCTCTTCTATGA

Protein sequence

>MsG0280010468.01.T01

MAMSGMRGLSVFISDIRNCQNKEQERLRVDKELGNIRTRFKNEKALTPYEKKKYVWKMLYIYMLGYDVDFGHMEAVSLISAPKYPEKQVGYIVTSSLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGNIGGREFAESLAPDVQKLLLSSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNQHEAYWSCLPKCVKTLERLARNQDIPQEYTYYGIPSPWLQVKTMRALQYFPTIEDPNTRRSLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDAEKEMMSQCVALLGKFIAVREPNIRYLGLENMTRMLMVTDVQDIIKRHQAQIITSLKDPDISIRRRALDLLYGMCDVTNAKDIVEELLQYLSTAEFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEGPTGQFETELIVLILTRHITHMNVMYLVFLSHSHSFRYESSIEVEIQQRAVEYFALSRKGAALMDILAEMPKFPERQDDISAEQRLSQENGTLNQVDFSNPLQISLVICWVLWLLKALLVAVSTSAKLKSRNGRDCSRCHSHSPCWAGGQFCAGTLVDQLALKQNGELIKGILFFLGEQEYFSSYICSCFNIASRPFENGALSSTRYYTSRAQVQCPLEITNLHPSRDVAVIDFSYKFGNDMARIETDPADRTQLRMTVASGDPTLTFELKEFIKEQLVSIPIASRIPPTHAAPMSPVAQPASAPPPAALNDPGAALAALL*