AlfalfaGEDB | MsG0780036347.01

M. sativa cultivar ZhongmuNo.1 / MsG0780036347.01

KEGG: K08493
GO: GO:0006886 GO:0016020 GO:0016192
PFAM: PF05008

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036347.01.T01	AES77516.2	74.046	131	22	3	36	166	78	196	4.96E-50	177

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036347.01.T01	Q9LVP9	51.538	130	42	3	42	166	1	114	7.18E-32	120

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036347.01.T01	G7L326	74.046	131	22	3	36	166	78	196	2.37e-50	177

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048727.01	MsG0780036347.01	-0.804135	2.498394e-49	1.278181e-46
MsG0080048878.01	MsG0780036347.01	-0.807061	6.075179e-50	3.350752e-47
MsG0080049068.01	MsG0780036347.01	-0.806408	8.344716e-50	4.525753e-47
MsG0080049069.01	MsG0780036347.01	-0.828107	1.080492e-54	1.063699e-51
MsG0180000834.01	MsG0780036347.01	-0.804061	2.587805e-49	1.321492e-46
MsG0180001248.01	MsG0780036347.01	0.802152	6.424974e-49	3.124425e-46
MsG0180002700.01	MsG0780036347.01	-0.807218	5.627351e-50	3.116510e-47
MsG0180003763.01	MsG0780036347.01	0.819689	1.018123e-52	7.889584e-50
MsG0180003767.01	MsG0780036347.01	0.813209	2.874344e-51	1.865276e-48
MsG0180003942.01	MsG0780036347.01	0.847596	1.046600e-59	1.869633e-56

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036347.01.T01	MTR_7g011570	74.046	131	22	3	36	166	78	196	6.01e-54	177
MsG0780036347.01.T01	MTR_7g011570	73.600	125	22	2	42	166	1	114	1.51e-53	173
MsG0780036347.01.T01	MTR_6g012860	66.400	125	31	2	42	166	1	114	3.31e-46	154
MsG0780036347.01.T01	MTR_3g037380	50.388	129	43	3	42	165	1	113	9.93e-31	114
MsG0780036347.01.T01	MTR_5g042530	49.593	123	52	1	42	164	1	113	1.66e-29	111
MsG0780036347.01.T01	MTR_5g042530	68.421	57	18	0	107	163	1	57	4.11e-18	79.7
MsG0780036347.01.T01	MTR_3g037380	62.712	59	22	0	107	165	1	59	4.93e-17	76.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036347.01.T01	AT3G29100	51.538	130	42	3	42	166	1	114	7.32e-33	120
MsG0780036347.01.T01	AT5G39510	50.000	130	44	2	42	166	1	114	4.55e-32	117
MsG0780036347.01.T01	AT1G26670	49.180	122	52	1	42	163	1	112	8.67e-30	112
MsG0780036347.01.T01	AT3G29100	68.333	60	19	0	107	166	1	60	1.20e-21	89.0
MsG0780036347.01.T01	AT3G29100	68.333	60	19	0	107	166	1	60	1.20e-21	89.0
MsG0780036347.01.T01	AT3G29100	68.333	60	19	0	107	166	1	60	1.20e-21	89.0
MsG0780036347.01.T01	AT3G29100	67.213	61	20	0	106	166	28	88	1.21e-21	89.7
MsG0780036347.01.T01	AT5G39630	38.525	122	64	2	42	163	1	111	1.40e-14	71.2

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Find 69 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTAGCTCTTTAACCAT+TGG	0.507608	7:+6829792	None:intergenic
AACAACATATCCCGGGCAGA+GGG	0.578673	7:+6825473	None:intergenic
AACCACCGCCGGTTTATGAT+CGG	0.558907	7:+6824602	None:intergenic
AAGAAGTAGGTACAGATAGG+TGG	0.641964	7:-6824638	MsG0780036347.01.T01:CDS
AAGGAATTGAGTGAGATGAT+TGG	0.519311	7:-6824462	MsG0780036347.01.T01:CDS
AAGTATGCATTTGAAACAGA+AGG	0.569083	7:+6826238	None:intergenic
AAGTTTGCAGCCAAACATTA+AGG	0.247833	7:-6825585	MsG0780036347.01.T01:CDS
ACAACATATCCCGGGCAGAG+GGG	0.706468	7:+6825474	None:intergenic
ACGATGAGTACCGTGTTTGA+AGG	0.542645	7:-6828031	MsG0780036347.01.T01:CDS
ACGTTCATATCCTTCAAACA+CGG	0.683882	7:+6828021	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACTAGTAAAACTGTAGG+TGG	+	Chr7:6827689-6827708	None:intergenic	30.0%
AAAAGACAAGAGTTAAGAAG+AGG	+	Chr7:6825320-6825339	None:intergenic	30.0%
AAAAGGAACAAAAATAAGGG+AGG	+	Chr7:6828240-6828259	None:intergenic	30.0%
AAAGGAACAAAAATAAGGGA+GGG	+	Chr7:6828239-6828258	None:intergenic	30.0%
AAATTTGGGAAGCTACAATT+CGG	-	Chr7:6827195-6827214	MsG0780036347.01.T01:intron	30.0%
AAGAAGAACAGAAAGATTCA+GGG	+	Chr7:6829111-6829130	None:intergenic	30.0%
AAGGGAAATAGTTTACATGA+TGG	+	Chr7:6827563-6827582	None:intergenic	30.0%
ACTATTAAGGGAAACATTTG+AGG	+	Chr7:6827921-6827940	None:intergenic	30.0%
ATAAAAATAGAGGGTTAGAG+TGG	-	Chr7:6825674-6825693	MsG0780036347.01.T01:intron	30.0%
ATCAAGGGAATACTCATTAA+TGG	+	Chr7:6827504-6827523	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	6824449	6829832	6824449	ID=MsG0780036347.01;Name=MsG0780036347.01
Chr7	mRNA	6824449	6829832	6824449	ID=MsG0780036347.01.T01;Parent=MsG0780036347.01;Name=MsG0780036347.01.T01;_AED=0.55;_eAED=0.80;_QI=0\|0\|0.33\|0.83\|0.8\|0.83\|6\|0\|264
Chr7	exon	6829739	6829832	6829739	ID=MsG0780036347.01.T01:exon:3663;Parent=MsG0780036347.01.T01
Chr7	exon	6827957	6828079	6827957	ID=MsG0780036347.01.T01:exon:3662;Parent=MsG0780036347.01.T01
Chr7	exon	6826176	6826268	6826176	ID=MsG0780036347.01.T01:exon:3661;Parent=MsG0780036347.01.T01
Chr7	exon	6825445	6825632	6825445	ID=MsG0780036347.01.T01:exon:3660;Parent=MsG0780036347.01.T01
Chr7	exon	6825266	6825305	6825266	ID=MsG0780036347.01.T01:exon:3659;Parent=MsG0780036347.01.T01
Chr7	exon	6824449	6824705	6824449	ID=MsG0780036347.01.T01:exon:3658;Parent=MsG0780036347.01.T01
Chr7	CDS	6829739	6829832	6829739	ID=MsG0780036347.01.T01:cds;Parent=MsG0780036347.01.T01
Chr7	CDS	6827957	6828079	6827957	ID=MsG0780036347.01.T01:cds;Parent=MsG0780036347.01.T01
Chr7	CDS	6826176	6826268	6826176	ID=MsG0780036347.01.T01:cds;Parent=MsG0780036347.01.T01
Chr7	CDS	6825445	6825632	6825445	ID=MsG0780036347.01.T01:cds;Parent=MsG0780036347.01.T01
Chr7	CDS	6825266	6825305	6825266	ID=MsG0780036347.01.T01:cds;Parent=MsG0780036347.01.T01
Chr7	CDS	6824449	6824705	6824449	ID=MsG0780036347.01.T01:cds;Parent=MsG0780036347.01.T01

Gene Sequence

>MsG0780036347.01.T01

ATGGCTTCTTCTCCACCTCCAATGGTTAAAGAGCTAGGTTTGAGTAATGTAGATATTGAGCATGACACTCAAATTGTGGTGTCCATATTTAAAAAGAAAGTAGCGATTTTTGTGTTGGAGACGATGAGTACCGTGTTTGAAGGATATGAACGTCAATACTGTGAGCTTTCTGCTAAACTATCCAAAACTTGTACTGCAGCTGCTGCTCTTAATGGAGGTACATTTCCTTCTGTTTCAAATGCATACTTCTTTATCTTTGTGTTTGACGCCCCTCCTTTTTTGGATCAACTCCTCCAAAGTGAATTAGAGGATTCGGAAATGGATCTTGAGGCAAGAAGTTTGCAGCCAAACATTAAGGGTGTGCTCCTTGCTAAGTTGCGGGAATACAAATCAGATCTGAACAATAATAAAAGCGAACTTAAGAAACTTGTATCTGGTAACATGAACCCCTCTGCCCGGGATATGTTGTTGGAATCAGGCATGGCAGATGCTATGACGAGGATGTATCTTGTGAGAATGCCTTTTTTATATGAGAATGCCAGGGTGGAAAATGGAGAGGCAGAGGGACAAATAGGTGGCGATGAAGAAGTAGGTACAGATAGGTGGCTATGGCATGATTCCGATCATAAACCGGCGGTGGTTGGTGGCGACGACGTGATTCGCGCCGGGAGTGTTGGGGTTGCCGGAATAGATGAGTGGGGGAAGAAGAAACATCAGTTATTGAAGGAAGAAGAAGAATGGTTAACAGAGAGAAGAGAGAAGGAATTGAGTGAGATGATTGGCACATGTTGTTAA

Protein sequence

>MsG0780036347.01.T01

MASSPPPMVKELGLSNVDIEHDTQIVVSIFKKKVAIFVLETMSTVFEGYERQYCELSAKLSKTCTAAAALNGGTFPSVSNAYFFIFVFDAPPFLDQLLQSELEDSEMDLEARSLQPNIKGVLLAKLREYKSDLNNNKSELKKLVSGNMNPSARDMLLESGMADAMTRMYLVRMPFLYENARVENGEAEGQIGGDEEVGTDRWLWHDSDHKPAVVGGDDVIRAGSVGVAGIDEWGKKKHQLLKEEEEWLTERREKELSEMIGTCC*