AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780041569.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041569.01.T01 MTR_7g113730 98.837 86 1 0 245 330 376 461 4.51e-51 177
MsG0780041569.01.T01 MTR_7g113730 90.909 88 8 0 1 88 110 197 1.33e-42 154
MsG0780041569.01.T01 MTR_7g113730 84.000 50 8 0 200 249 264 313 7.57e-20 90.5
MsG0780041569.01.T01 MTR_5g037350 87.692 65 8 0 137 201 492 556 1.96e-32 127
MsG0780041569.01.T01 MTR_2g013980 68.539 89 28 0 113 201 1096 1184 1.42e-22 99.4
MsG0780041569.01.T01 MTR_6g086840 81.633 49 9 0 153 201 9 57 1.26e-20 86.7
MsG0780041569.01.T01 MTR_1g090220 72.727 55 15 0 137 191 123 177 3.55e-20 86.7
MsG0780041569.01.T01 MTR_3g467660 69.643 56 17 0 137 192 12 67 8.52e-19 85.9
MsG0780041569.01.T01 MTR_5g024920 54.651 86 37 1 116 201 3 86 1.08e-18 87.4
MsG0780041569.01.T01 MTR_3g102480 66.129 62 21 0 110 171 3 64 1.79e-17 77.4
MsG0780041569.01.T01 MTR_6g027580 50.000 84 39 1 247 327 442 525 3.05e-17 82.8
MsG0780041569.01.T01 MTR_7g086690 47.674 86 42 1 244 326 436 521 2.38e-16 80.1
MsG0780041569.01.T01 MTR_8g021180 38.793 116 69 1 214 327 473 588 3.46e-16 79.7
MsG0780041569.01.T01 MTR_1g021865 55.385 65 23 1 137 201 136 194 3.18e-15 73.9
MsG0780041569.01.T01 MTR_6g027570 47.561 82 40 1 247 325 428 509 6.27e-15 75.9
MsG0780041569.01.T01 MTR_3g073740 84.615 39 6 0 155 193 8 46 8.89e-15 69.7
MsG0780041569.01.T01 MTR_7g025530 56.098 82 30 2 125 201 243 323 1.65e-12 68.6
MsG0780041569.01.T01 MTR_5g031630 90.909 33 3 0 160 192 199 231 2.34e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041569.01.T01 AT1G08960 47.354 359 157 8 1 329 132 488 1.42e-82 260
MsG0780041569.01.T01 AT5G17860 30.595 353 197 11 1 327 141 471 8.44e-28 114
MsG0780041569.01.T01 AT5G17860 50.000 84 39 1 247 327 423 506 2.72e-17 83.2
MsG0780041569.01.T01 AT1G54115 44.706 85 45 1 245 327 496 580 7.20e-15 75.9
MsG0780041569.01.T01 AT3G14070 43.678 87 47 1 245 329 495 581 4.72e-14 73.6
MsG0780041569.01.T01 AT5G17850 45.679 81 41 2 247 324 415 495 2.17e-12 68.2
MsG0780041569.01.T01 AT5G17850 45.679 81 41 2 247 324 415 495 2.17e-12 68.2

Find 89 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGAAAAGTTGGTAGAAAAT+AGG 0.288105 7:-92536118 MsG0780041569.01.T01:CDS
GAATTAAGTTCATAGGCTTT+AGG 0.299180 7:+92534696 None:intergenic
GAAAATAGGCTTAGATGGTT+TGG 0.322680 7:-92536104 MsG0780041569.01.T01:CDS
TTCGTCTCTGCTCTTGTTGT+CGG 0.331098 7:-92537170 MsG0780041569.01.T01:CDS
AACCATTAGAAAAGATTTAG+AGG 0.331614 7:-92535976 MsG0780041569.01.T01:CDS
GAATGAGTTGAATCCAAATA+TGG 0.339062 7:-92535952 MsG0780041569.01.T01:intron
GTGAATTGCCTTGAAGCTTT+AGG 0.347493 7:-92534921 MsG0780041569.01.T01:CDS
TGGTAGAAAATAGGCTTAGA+TGG 0.349489 7:-92536109 MsG0780041569.01.T01:CDS
CATCCGGCCATTGCCATTGC+CGG 0.357339 7:+92534792 None:intergenic
GCAATGGCCGGATGCTTTGC+TGG 0.358095 7:-92534783 MsG0780041569.01.T01:CDS
TGTTGGTCTTGGAACTGCTT+TGG 0.368704 7:-92534742 MsG0780041569.01.T01:CDS
GGTCAATACCGTACCGGCTT+CGG 0.391101 7:-92537215 MsG0780041569.01.T01:CDS
CAACGTGGAATTAAGTTCAT+AGG 0.391749 7:+92534689 None:intergenic
TTTAACATGCTTGTTGGTCT+TGG 0.397900 7:-92534753 MsG0780041569.01.T01:CDS
AGATCAAATGGAGGAGAGTC+AGG 0.409734 7:-92536039 MsG0780041569.01.T01:CDS
TAGTGGACAAAGAGCGATAT+TGG 0.413049 7:+92535170 None:intergenic
GAGGGATTGTCAATCTTAAG+AGG 0.419753 7:+92535232 None:intergenic
CATTGCGATGGTGCTGGTTG+AGG 0.420449 7:+92535213 None:intergenic
TCTTCTTACAACGGCATCTA+CGG 0.424045 7:+92536064 None:intergenic
ACAAACGGCGCCGGATCAAC+GGG 0.425874 7:+92537119 None:intergenic
CTCAGTTATAGTAGAAAAGT+TGG 0.431394 7:-92536129 MsG0780041569.01.T01:intron
AGTCAGGTTAAAAGAGGTAG+AGG 0.455911 7:-92536023 MsG0780041569.01.T01:CDS
CCAATGTTTAACATGCTTGT+TGG 0.469958 7:-92534759 MsG0780041569.01.T01:CDS
ATTGCGATGGTGCTGGTTGA+GGG 0.474576 7:+92535214 None:intergenic
GAAGCGTGCCTAAAGCTTCA+AGG 0.475284 7:+92534913 None:intergenic
TAGGTCTTACCGTGCTAGCA+TGG 0.482485 7:-92534869 MsG0780041569.01.T01:CDS
GACAGGAAGCTCCCATGCCT+TGG 0.483478 7:+92535260 None:intergenic
TGTAAGAAGAGTAGATCAAA+TGG 0.483895 7:-92536051 MsG0780041569.01.T01:CDS
AAACTGCCGCAGGCATTCCT+AGG 0.484727 7:-92534888 MsG0780041569.01.T01:CDS
GGCGCCGGATCAACGGGAAA+AGG 0.489382 7:+92537125 None:intergenic
GCGAGAGATGAGAAGACGTC+GGG 0.494583 7:+92537251 None:intergenic
CACGCTTCTCAAACTGCCGC+AGG 0.495555 7:-92534898 MsG0780041569.01.T01:CDS
GCTTACAGATTTCCAAGGCA+TGG 0.505102 7:-92535272 MsG0780041569.01.T01:intron
AACAAACGGCGCCGGATCAA+CGG 0.505525 7:+92537118 None:intergenic
AGTTGCTAAAGCTGGTCATC+CGG 0.505727 7:-92534811 MsG0780041569.01.T01:CDS
GCCGTCACACTTCTCGCTCT+CGG 0.506649 7:-92537284 MsG0780041569.01.T01:CDS
TGGTCATCCGGCAATGGCAA+TGG 0.515868 7:-92534799 MsG0780041569.01.T01:CDS
CTGTTCCATTGCGATGGTGC+TGG 0.516010 7:+92535207 None:intergenic
AAGAGTTCTGCGGATCTTGA+GGG 0.516492 7:-92536937 MsG0780041569.01.T01:CDS
GAGGAGAGTCAGGTTAAAAG+AGG 0.517218 7:-92536029 MsG0780041569.01.T01:CDS
AAAGAGTTCTGCGGATCTTG+AGG 0.517795 7:-92536938 MsG0780041569.01.T01:CDS
AACAACACATCTCTAACAAA+CGG 0.524091 7:+92537104 None:intergenic
TTTGGGAATGGCCAATCGGA+GGG 0.524305 7:-92536962 MsG0780041569.01.T01:CDS
CATTGGTCCAGCAAAGCATC+CGG 0.524643 7:+92534776 None:intergenic
AGCAGAGACGAAAGCACCGG+CGG 0.534152 7:+92537181 None:intergenic
CATCCGGCAATGGCAATGGC+CGG 0.540312 7:-92534795 MsG0780041569.01.T01:CDS
CTTACAGATTTCCAAGGCAT+GGG 0.541325 7:-92535271 MsG0780041569.01.T01:intron
AGGTCTTACCGTGCTAGCAT+GGG 0.548021 7:-92534868 MsG0780041569.01.T01:CDS
CTTCTTACAACGGCATCTAC+GGG 0.551114 7:+92536065 None:intergenic
CGCGCCGGTCAATACCGTAC+CGG 0.551721 7:-92537221 MsG0780041569.01.T01:CDS
AATCTTAAGAGGGTTGAGAC+AGG 0.554164 7:+92535243 None:intergenic
TTCGGCGCTATACTCTCCGC+CGG 0.558460 7:-92537197 MsG0780041569.01.T01:CDS
TCTCTCGCCGCTCTTCGCGC+CGG 0.558505 7:-92537236 MsG0780041569.01.T01:CDS
CATGCATACAAGAGGGCTAG+TGG 0.564229 7:+92535153 None:intergenic
ACACTTCTCGCTCTCGGTAA+CGG 0.567195 7:-92537278 MsG0780041569.01.T01:CDS
TGGATTTGGGAATGGCCAAT+CGG 0.570540 7:-92536966 MsG0780041569.01.T01:CDS
AAGAAGAGTAGATCAAATGG+AGG 0.572060 7:-92536048 MsG0780041569.01.T01:CDS
GATGTTGCAGTTGCTAAAGC+TGG 0.582356 7:-92534819 MsG0780041569.01.T01:CDS
GGAGAGTATAGCGCCGAAGC+CGG 0.582657 7:+92537202 None:intergenic
CTCAACCAGCACCATCGCAA+TGG 0.584181 7:-92535212 MsG0780041569.01.T01:CDS
AGGGATTGTCAATCTTAAGA+GGG 0.584931 7:+92535233 None:intergenic
TTGATCTACTCTTCTTACAA+CGG 0.585966 7:+92536055 None:intergenic
TGAATTTCCCCATGCTAGCA+CGG 0.589057 7:+92534860 None:intergenic
GCTAGCATGGGGAAATTCAG+TGG 0.592549 7:-92534856 MsG0780041569.01.T01:CDS
GAAGCCGGTACGGTATTGAC+CGG 0.592685 7:+92537217 None:intergenic
ATTTGGGAATGGCCAATCGG+AGG 0.593231 7:-92536963 MsG0780041569.01.T01:CDS
CTAGCATGGGGAAATTCAGT+GGG 0.597425 7:-92534855 MsG0780041569.01.T01:CDS
TAAAGCTGGTCATCCGGCAA+TGG 0.598791 7:-92534805 MsG0780041569.01.T01:CDS
GTATAGCGCCGAAGCCGGTA+CGG 0.607381 7:+92537207 None:intergenic
GTATTGACCGGCGCGAAGAG+CGG 0.613005 7:+92537229 None:intergenic
ATGAGTTACATGCATACAAG+AGG 0.615518 7:+92535145 None:intergenic
ATGCTAGCACGGTAAGACCT+AGG 0.615531 7:+92534871 None:intergenic
CCAACAAGCATGTTAAACAT+TGG 0.616677 7:+92534759 None:intergenic
AAGAGCAGAGACGAAAGCAC+CGG 0.618004 7:+92537178 None:intergenic
ACCGAGAGCGAGAAGTGTGA+CGG 0.626907 7:+92537283 None:intergenic
ACATCTCTAACAAACGGCGC+CGG 0.629400 7:+92537110 None:intergenic
GGCGAGAGATGAGAAGACGT+CGG 0.634201 7:+92537250 None:intergenic
TAAAATCTGTTCCATTGCGA+TGG 0.654446 7:+92535201 None:intergenic
GGTCTTACCGTGCTAGCATG+GGG 0.659113 7:-92534867 MsG0780041569.01.T01:CDS
CTATGAACTTAATTCCACGT+TGG 0.667999 7:-92534688 MsG0780041569.01.T01:CDS
TGAGTTACATGCATACAAGA+GGG 0.668778 7:+92535146 None:intergenic
ACTCTGCTTACAGATTTCCA+AGG 0.670878 7:-92535277 MsG0780041569.01.T01:intron
ATAGAACGCAACGAATCCAA+CGG 0.692109 7:+92537017 None:intergenic
TCGGAGGGAAAAGAGTTCTG+CGG 0.694446 7:-92536947 MsG0780041569.01.T01:CDS
AGCATGGGGAAATTCAGTGG+GGG 0.714129 7:-92534853 MsG0780041569.01.T01:CDS
GTAAGACCTAGGAATGCCTG+CGG 0.717066 7:+92534882 None:intergenic
GAGAGCGAGAAGTGTGACGG+CGG 0.717520 7:+92537286 None:intergenic
TAGCATGGGGAAATTCAGTG+GGG 0.756066 7:-92534854 MsG0780041569.01.T01:CDS
ATGCAATCACTATACCAACG+TGG 0.773379 7:+92534674 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTAAATAAAATATTCC+TGG - Chr7:92536564-92536583 MsG0780041569.01.T01:intron 10.0%
!! AAATTAAATAAAATATTCCT+GGG - Chr7:92536565-92536584 MsG0780041569.01.T01:intron 10.0%
!!! ATTGAATTTTAATCATTATT+AGG + Chr7:92535740-92535759 None:intergenic 10.0%
!! AATTCAATTCAAAAGATTAA+TGG - Chr7:92535752-92535771 MsG0780041569.01.T01:intron 15.0%
!!! GAATTTTCTTATATTATTGA+AGG + Chr7:92535602-92535621 None:intergenic 15.0%
!! ACAATTACTATCATATCAAA+TGG + Chr7:92536452-92536471 None:intergenic 20.0%
!! CAATTACTATCATATCAAAT+GGG + Chr7:92536451-92536470 None:intergenic 20.0%
!! GAAGATAATTTGAATTTAGA+AGG - Chr7:92536203-92536222 MsG0780041569.01.T01:intron 20.0%
!!! AATCTTTTCACACATAATAT+GGG - Chr7:92536279-92536298 MsG0780041569.01.T01:intron 20.0%
!!! ATTCAAAAGATTAATGGTTT+TGG - Chr7:92535758-92535777 MsG0780041569.01.T01:intron 20.0%
!!! TAATCTTTTCACACATAATA+TGG - Chr7:92536278-92536297 MsG0780041569.01.T01:intron 20.0%
!!! TTTTGATAATACAGTAATCT+GGG - Chr7:92535819-92535838 MsG0780041569.01.T01:intron 20.0%
!!! TTTTTGATAATACAGTAATC+TGG - Chr7:92535818-92535837 MsG0780041569.01.T01:intron 20.0%
! AACCATTAGAAAAGATTTAG+AGG - Chr7:92535997-92536016 MsG0780041569.01.T01:CDS 25.0%
! GATATAATTCATTCATAGCT+TGG - Chr7:92535376-92535395 MsG0780041569.01.T01:intron 25.0%
! GATCTATCAAAAACCATATT+TGG + Chr7:92536037-92536056 None:intergenic 25.0%
! GTGAAAAGATTAACAGTTAA+TGG + Chr7:92536270-92536289 None:intergenic 25.0%
! TACAACTCATCATACAAAAA+AGG + Chr7:92536143-92536162 None:intergenic 25.0%
!! AACCTGATTTTGAATAAAAC+AGG + Chr7:92535482-92535501 None:intergenic 25.0%
!! ACCTGATTTTGAATAAAACA+GGG + Chr7:92535481-92535500 None:intergenic 25.0%
!! ATCTTTTCACACATAATATG+GGG - Chr7:92536280-92536299 MsG0780041569.01.T01:intron 25.0%
!! GAAAAATTAGTTTACACTGA+CGG - Chr7:92535437-92535456 MsG0780041569.01.T01:intron 25.0%
!! GTTCTTTTTCCAATACAAAA+TGG + Chr7:92536949-92536968 None:intergenic 25.0%
!! TTTATCTTTTTCTACAGATC+CGG + Chr7:92535094-92535113 None:intergenic 25.0%
!! TTTGTGTTTTACATGGATTT+GGG - Chr7:92534994-92535013 MsG0780041569.01.T01:intron 25.0%
!! TTTTGTGTTTTACATGGATT+TGG - Chr7:92534993-92535012 MsG0780041569.01.T01:intron 25.0%
!!! TACTTATTAGTTAACTTGCT+TGG - Chr7:92535524-92535543 MsG0780041569.01.T01:intron 25.0%
!!! TAGAAAAGTTGGTAGAAAAT+AGG - Chr7:92535855-92535874 MsG0780041569.01.T01:intron 25.0%
!!! TTTCTAAAATGGTTACTCAT+AGG - Chr7:92535549-92535568 MsG0780041569.01.T01:intron 25.0%
AAAACTATGGGATGATTAAG+TGG + Chr7:92536859-92536878 None:intergenic 30.0%
AACAACACATCTCTAACAAA+CGG + Chr7:92534872-92534891 None:intergenic 30.0%
ATTTAATGTCTACCGACAAA+GGG + Chr7:92536323-92536342 None:intergenic 30.0%
CACAATCGTTATTTATGTTG+TGG - Chr7:92536234-92536253 MsG0780041569.01.T01:intron 30.0%
CATATGTAACCTTGAAACAA+TGG - Chr7:92535685-92535704 MsG0780041569.01.T01:intron 30.0%
CATTGTTTCAAGGTTACATA+TGG + Chr7:92535687-92535706 None:intergenic 30.0%
CCTGGGTAAAAAAATTAGAT+AGG - Chr7:92536582-92536601 MsG0780041569.01.T01:intron 30.0%
CTCAGTTATAGTAGAAAAGT+TGG - Chr7:92535844-92535863 MsG0780041569.01.T01:intron 30.0%
GAATTAAGTTCATAGGCTTT+AGG + Chr7:92537280-92537299 None:intergenic 30.0%
GACAATGCATAAAATATGCA+AGG - Chr7:92535239-92535258 MsG0780041569.01.T01:CDS 30.0%
TAAAGTCTACTATCACTAAG+TGG + Chr7:92536501-92536520 None:intergenic 30.0%
TGTAAGAAGAGTAGATCAAA+TGG - Chr7:92535922-92535941 MsG0780041569.01.T01:intron 30.0%
TGTATGATGAGTTGTAGTAA+TGG - Chr7:92536147-92536166 MsG0780041569.01.T01:intron 30.0%
TTAGTGATAGTAGACTTTAG+TGG - Chr7:92536502-92536521 MsG0780041569.01.T01:intron 30.0%
TTGATCTACTCTTCTTACAA+CGG + Chr7:92535921-92535940 None:intergenic 30.0%
! AAAGCACACGTATTTTTCTT+TGG + Chr7:92535290-92535309 None:intergenic 30.0%
! ATGGAACAGATTTTATGCAT+CGG - Chr7:92536780-92536799 MsG0780041569.01.T01:intron 30.0%
! CACCTCTAAATCTTTTCTAA+TGG + Chr7:92536002-92536021 None:intergenic 30.0%
! GAATGAGTTGAATCCAAATA+TGG - Chr7:92536021-92536040 MsG0780041569.01.T01:CDS 30.0%
! TCTTTTCACACATAATATGG+GGG - Chr7:92536281-92536300 MsG0780041569.01.T01:intron 30.0%
! TGCATTTCTCCATTTTGTAT+TGG - Chr7:92536937-92536956 MsG0780041569.01.T01:CDS 30.0%
! TGGTTTTTGATAGATCACTA+TGG - Chr7:92536041-92536060 MsG0780041569.01.T01:CDS 30.0%
! TTTTCTAATGGTTTCTCGAA+TGG + Chr7:92535990-92536009 None:intergenic 30.0%
!! ACTTTCAATTAGCTTTGTGA+TGG - Chr7:92535158-92535177 MsG0780041569.01.T01:CDS 30.0%
!! TCCCTGTTTTATTCAAAATC+AGG - Chr7:92535477-92535496 MsG0780041569.01.T01:intron 30.0%
!! TTAGTGCTGAGATTTTTCTA+TGG - Chr7:92534929-92534948 MsG0780041569.01.T01:CDS 30.0%
!!! AATTAGCTTTGTGATGGTTT+TGG - Chr7:92535164-92535183 MsG0780041569.01.T01:CDS 30.0%
!!! CCTATCTAATTTTTTTACCC+AGG + Chr7:92536585-92536604 None:intergenic 30.0%
!!! TGTTGGTTTTGTGTTTTACA+TGG - Chr7:92534987-92535006 MsG0780041569.01.T01:intron 30.0%
AAATGTTATGCATCTGTGTG+TGG - Chr7:92536605-92536624 MsG0780041569.01.T01:intron 35.0%
AAGAAGAGTAGATCAAATGG+AGG - Chr7:92535925-92535944 MsG0780041569.01.T01:intron 35.0%
ACATCAAATGAATAGCTCCA+AGG + Chr7:92535711-92535730 None:intergenic 35.0%
AGGGATTGTCAATCTTAAGA+GGG + Chr7:92536743-92536762 None:intergenic 35.0%
ATGAGTTACATGCATACAAG+AGG + Chr7:92536831-92536850 None:intergenic 35.0%
CAACGTGGAATTAAGTTCAT+AGG + Chr7:92537287-92537306 None:intergenic 35.0%
CCAACAAGCATGTTAAACAT+TGG + Chr7:92537217-92537236 None:intergenic 35.0%
CCAATGTTTAACATGCTTGT+TGG - Chr7:92537214-92537233 MsG0780041569.01.T01:CDS 35.0%
CTATGAACTTAATTCCACGT+TGG - Chr7:92537285-92537304 MsG0780041569.01.T01:CDS 35.0%
GAAAAAGATAAACACGCTTC+TGG - Chr7:92535102-92535121 MsG0780041569.01.T01:intron 35.0%
GAAAATAGGCTTAGATGGTT+TGG - Chr7:92535869-92535888 MsG0780041569.01.T01:intron 35.0%
GAAATCTGTAAGCAGAGTAT+GGG + Chr7:92536694-92536713 None:intergenic 35.0%
GATTTAATGTCTACCGACAA+AGG + Chr7:92536324-92536343 None:intergenic 35.0%
GGTATATGTTTCTCAAGTTC+TGG - Chr7:92536168-92536187 MsG0780041569.01.T01:intron 35.0%
TAAAATCTGTTCCATTGCGA+TGG + Chr7:92536775-92536794 None:intergenic 35.0%
TGAGTTACATGCATACAAGA+GGG + Chr7:92536830-92536849 None:intergenic 35.0%
TGATCATAGTAGCATCAACT+AGG + Chr7:92536427-92536446 None:intergenic 35.0%
TGCATAAAATATGCAAGGTC+CGG - Chr7:92535244-92535263 MsG0780041569.01.T01:CDS 35.0%
TGGTAGAAAATAGGCTTAGA+TGG - Chr7:92535864-92535883 MsG0780041569.01.T01:intron 35.0%
TGTCGGTAGACATTAAATCA+AGG - Chr7:92536325-92536344 MsG0780041569.01.T01:intron 35.0%
! CACGTATTTTTCTTTGGTAG+TGG + Chr7:92535284-92535303 None:intergenic 35.0%
! CTTGCTTGGACTTTCTAAAA+TGG - Chr7:92535538-92535557 MsG0780041569.01.T01:intron 35.0%
! GCGTTCTATCTTTTCTTTGT+TGG - Chr7:92534970-92534989 MsG0780041569.01.T01:intron 35.0%
! GTTTCTCGAATGGTTTTCTT+AGG + Chr7:92535980-92535999 None:intergenic 35.0%
! GTTTTACATGGATTTGGGAA+TGG - Chr7:92534999-92535018 MsG0780041569.01.T01:intron 35.0%
! TTTAACATGCTTGTTGGTCT+TGG - Chr7:92537220-92537239 MsG0780041569.01.T01:CDS 35.0%
!! AGGTTTGTTAAACACTTGCA+CGG - Chr7:92535497-92535516 MsG0780041569.01.T01:intron 35.0%
!! ATTTCGTGGATCTTTTGGTT+CGG - Chr7:92535125-92535144 MsG0780041569.01.T01:intron 35.0%
!!! ATTTTTCTTTGGTAGTGGCT+GGG + Chr7:92535279-92535298 None:intergenic 35.0%
!!! TATTTTTCTTTGGTAGTGGC+TGG + Chr7:92535280-92535299 None:intergenic 35.0%
AATCTTAAGAGGGTTGAGAC+AGG + Chr7:92536733-92536752 None:intergenic 40.0%
ACTCTGCTTACAGATTTCCA+AGG - Chr7:92536696-92536715 MsG0780041569.01.T01:intron 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG - Chr7:92535950-92535969 MsG0780041569.01.T01:intron 40.0%
ATAGAACGCAACGAATCCAA+CGG + Chr7:92534959-92534978 None:intergenic 40.0%
ATTAGGGAGGAGGAAAACTA+TGG + Chr7:92536872-92536891 None:intergenic 40.0%
CCAAAACACACTCATAACGA+AGG + Chr7:92537008-92537027 None:intergenic 40.0%
CTTACAGATTTCCAAGGCAT+GGG - Chr7:92536702-92536721 MsG0780041569.01.T01:intron 40.0%
GAAGCTTGTCATGAACACTA+CGG + Chr7:92536912-92536931 None:intergenic 40.0%
GACATTAAATCAAGGACAGC+TGG - Chr7:92536333-92536352 MsG0780041569.01.T01:intron 40.0%
GAGGGATTGTCAATCTTAAG+AGG + Chr7:92536744-92536763 None:intergenic 40.0%
GCATAAAATATGCAAGGTCC+GGG - Chr7:92535245-92535264 MsG0780041569.01.T01:CDS 40.0%
GGAAATCTGTAAGCAGAGTA+TGG + Chr7:92536695-92536714 None:intergenic 40.0%
GTGAATTGCCTTGAAGCTTT+AGG - Chr7:92537052-92537071 MsG0780041569.01.T01:CDS 40.0%
TAACCTTGAAACAATGGCCT+TGG - Chr7:92535691-92535710 MsG0780041569.01.T01:intron 40.0%
TCTTCTTACAACGGCATCTA+CGG + Chr7:92535912-92535931 None:intergenic 40.0%
TTAGGGAGGAGGAAAACTAT+GGG + Chr7:92536871-92536890 None:intergenic 40.0%
TTTCACACATAATATGGGGG+AGG - Chr7:92536284-92536303 MsG0780041569.01.T01:intron 40.0%
! ATTTTTCTATGGCAAGCCGT+TGG - Chr7:92534940-92534959 MsG0780041569.01.T01:intron 40.0%
! CCTTCGTTATGAGTGTGTTT+TGG - Chr7:92537005-92537024 MsG0780041569.01.T01:CDS 40.0%
! TAGTGGACAAAGAGCGATAT+TGG + Chr7:92536806-92536825 None:intergenic 40.0%
! TCTGGATTTCGTGGATCTTT+TGG - Chr7:92535120-92535139 MsG0780041569.01.T01:intron 40.0%
! TGAAAGCACACGTATACGAA+AGG + Chr7:92535190-92535209 None:intergenic 40.0%
! TTTTGGATATCTACCACAGC+TGG - Chr7:92537022-92537041 MsG0780041569.01.T01:CDS 40.0%
!! ACCACAGAGGGAAAAGTATT+AGG + Chr7:92536889-92536908 None:intergenic 40.0%
!! ATGTTTCTCAAGTTCTGGAC+AGG - Chr7:92536173-92536192 MsG0780041569.01.T01:intron 40.0%
!! CCACAGAGGGAAAAGTATTA+GGG + Chr7:92536888-92536907 None:intergenic 40.0%
!! TATTACGACGAAAAAGCGTC+CGG - Chr7:92535072-92535091 MsG0780041569.01.T01:intron 40.0%
!!! TTTTTCTTTGGTAGTGGCTG+GGG + Chr7:92535278-92535297 None:intergenic 40.0%
AAACACGCTTCTGGATTTCG+TGG - Chr7:92535111-92535130 MsG0780041569.01.T01:intron 45.0%
AAAGAGTTCTGCGGATCTTG+AGG - Chr7:92535035-92535054 MsG0780041569.01.T01:intron 45.0%
AAGAGTTCTGCGGATCTTGA+GGG - Chr7:92535036-92535055 MsG0780041569.01.T01:intron 45.0%
AGATCAAATGGAGGAGAGTC+AGG - Chr7:92535934-92535953 MsG0780041569.01.T01:intron 45.0%
AGTAGCATCAACTAGGTCAG+TGG + Chr7:92536420-92536439 None:intergenic 45.0%
AGTTGCTAAAGCTGGTCATC+CGG - Chr7:92537162-92537181 MsG0780041569.01.T01:CDS 45.0%
CTAGCATGGGGAAATTCAGT+GGG - Chr7:92537118-92537137 MsG0780041569.01.T01:CDS 45.0%
CTTCTTACAACGGCATCTAC+GGG + Chr7:92535911-92535930 None:intergenic 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG - Chr7:92535944-92535963 MsG0780041569.01.T01:intron 45.0%
GATGTTGCAGTTGCTAAAGC+TGG - Chr7:92537154-92537173 MsG0780041569.01.T01:CDS 45.0%
GCTTACAGATTTCCAAGGCA+TGG - Chr7:92536701-92536720 MsG0780041569.01.T01:intron 45.0%
GGTCAGTGGTCAACGTAATT+TGG + Chr7:92536406-92536425 None:intergenic 45.0%
TAGCATGGGGAAATTCAGTG+GGG - Chr7:92537119-92537138 MsG0780041569.01.T01:CDS 45.0%
TAGCCAGTTGATCCCTTTGT+CGG - Chr7:92536308-92536327 MsG0780041569.01.T01:intron 45.0%
TATGGTTAACCTGCAGCGTT+TGG + Chr7:92535669-92535688 None:intergenic 45.0%
TGAATTTCCCCATGCTAGCA+CGG + Chr7:92537116-92537135 None:intergenic 45.0%
TGGATTTGGGAATGGCCAAT+CGG - Chr7:92535007-92535026 MsG0780041569.01.T01:intron 45.0%
! AAAAGCAGAGCATTTGCCTG+TGG - Chr7:92536973-92536992 MsG0780041569.01.T01:CDS 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + Chr7:92536090-92536109 None:intergenic 45.0%
! ACAGGCAAATGCTCTGCTTT+TGG + Chr7:92536974-92536993 None:intergenic 45.0%
! AGAACTCTTTTCCCTCCGAT+TGG + Chr7:92535025-92535044 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + Chr7:92536091-92536110 None:intergenic 45.0%
! CCCTAATACTTTTCCCTCTG+TGG - Chr7:92536885-92536904 MsG0780041569.01.T01:intron 45.0%
! GATCTAAAACCAAACGCTGC+AGG - Chr7:92535657-92535676 MsG0780041569.01.T01:intron 45.0%
! TTCGTCTCTGCTCTTGTTGT+CGG - Chr7:92534803-92534822 MsG0780041569.01.T01:CDS 45.0%
!! AGGCAAATGCTCTGCTTTTG+GGG + Chr7:92536972-92536991 None:intergenic 45.0%
!! AGGGAAAAGTATTAGGGAGG+AGG + Chr7:92536882-92536901 None:intergenic 45.0%
!! CAGAGGGAAAAGTATTAGGG+AGG + Chr7:92536885-92536904 None:intergenic 45.0%
!! CAGGCAAATGCTCTGCTTTT+GGG + Chr7:92536973-92536992 None:intergenic 45.0%
!! TGTTGGTCTTGGAACTGCTT+TGG - Chr7:92537231-92537250 MsG0780041569.01.T01:CDS 45.0%
!!! GGACGCTTTTTCGTCGTAAT+AGG + Chr7:92535073-92535092 None:intergenic 45.0%
ACACTTCTCGCTCTCGGTAA+CGG - Chr7:92534695-92534714 MsG0780041569.01.T01:CDS 50.0%
ACATCTCTAACAAACGGCGC+CGG + Chr7:92534866-92534885 None:intergenic 50.0%
AGCAGAGTATGGGATACGTC+AGG + Chr7:92536684-92536703 None:intergenic 50.0%
AGCATGGGGAAATTCAGTGG+GGG - Chr7:92537120-92537139 MsG0780041569.01.T01:CDS 50.0%
AGGTCTTACCGTGCTAGCAT+GGG - Chr7:92537105-92537124 MsG0780041569.01.T01:CDS 50.0%
ATGAACACTACGGACCACAG+AGG + Chr7:92536902-92536921 None:intergenic 50.0%
ATGCTAGCACGGTAAGACCT+AGG + Chr7:92537105-92537124 None:intergenic 50.0%
ATTTGGGAATGGCCAATCGG+AGG - Chr7:92535010-92535029 MsG0780041569.01.T01:intron 50.0%
CAACCAACTGAGCTAAGCTC+AGG + Chr7:92535219-92535238 None:intergenic 50.0%
CATGCATACAAGAGGGCTAG+TGG + Chr7:92536823-92536842 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - Chr7:92536089-92536108 MsG0780041569.01.T01:CDS 50.0%
CTACCGACAAAGGGATCAAC+TGG + Chr7:92536314-92536333 None:intergenic 50.0%
CTGAGCTTAGCTCAGTTGGT+TGG - Chr7:92535217-92535236 MsG0780041569.01.T01:CDS 50.0%
CTTATCCCACTAAGTGGGGT+CGG + Chr7:92536086-92536105 None:intergenic 50.0%
GAAGCGTGCCTAAAGCTTCA+AGG + Chr7:92537063-92537082 None:intergenic 50.0%
GCTAGCATGGGGAAATTCAG+TGG - Chr7:92537117-92537136 MsG0780041569.01.T01:CDS 50.0%
GCTCCAAGGCCATTGTTTCA+AGG + Chr7:92535697-92535716 None:intergenic 50.0%
GTAAGACCTAGGAATGCCTG+CGG + Chr7:92537094-92537113 None:intergenic 50.0%
TAAAGCTGGTCATCCGGCAA+TGG - Chr7:92537168-92537187 MsG0780041569.01.T01:CDS 50.0%
TAGGTCTTACCGTGCTAGCA+TGG - Chr7:92537104-92537123 MsG0780041569.01.T01:CDS 50.0%
TCGGAGGGAAAAGAGTTCTG+CGG - Chr7:92535026-92535045 MsG0780041569.01.T01:intron 50.0%
TGAACACTACGGACCACAGA+GGG + Chr7:92536901-92536920 None:intergenic 50.0%
TTTGGGAATGGCCAATCGGA+GGG - Chr7:92535011-92535030 MsG0780041569.01.T01:intron 50.0%
! AAGAGCAGAGACGAAAGCAC+CGG + Chr7:92534798-92534817 None:intergenic 50.0%
! CATTGGTCCAGCAAAGCATC+CGG + Chr7:92537200-92537219 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + Chr7:92536092-92536111 None:intergenic 50.0%
! TGCTCCTTTTCCCGTTGATC+CGG - Chr7:92534844-92534863 MsG0780041569.01.T01:CDS 50.0%
!! ATTGCGATGGTGCTGGTTGA+GGG + Chr7:92536762-92536781 None:intergenic 50.0%
!! GGCAAATGCTCTGCTTTTGG+GGG + Chr7:92536971-92536990 None:intergenic 50.0%
AAACTGCCGCAGGCATTCCT+AGG - Chr7:92537085-92537104 MsG0780041569.01.T01:CDS 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + Chr7:92536078-92536097 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - Chr7:92536077-92536096 MsG0780041569.01.T01:CDS 55.0%
ATTCACGAGCTCTCCAGCTG+TGG + Chr7:92537038-92537057 None:intergenic 55.0%
CCAACTGAGCTAAGCTCAGG+AGG + Chr7:92535216-92535235 None:intergenic 55.0%
CCTCCTGAGCTTAGCTCAGT+TGG - Chr7:92535213-92535232 MsG0780041569.01.T01:CDS 55.0%
CGACCCCACTTAGTGGGATA+AGG - Chr7:92536084-92536103 MsG0780041569.01.T01:CDS 55.0%
CTCAACCAGCACCATCGCAA+TGG - Chr7:92536761-92536780 MsG0780041569.01.T01:intron 55.0%
CTGTTCCATTGCGATGGTGC+TGG + Chr7:92536769-92536788 None:intergenic 55.0%
GCATTTGCCTGTGGTGGTTG+TGG - Chr7:92536982-92537001 MsG0780041569.01.T01:CDS 55.0%
GCGAGAGATGAGAAGACGTC+GGG + Chr7:92534725-92534744 None:intergenic 55.0%
GGCGAGAGATGAGAAGACGT+CGG + Chr7:92534726-92534745 None:intergenic 55.0%
GGTCTTACCGTGCTAGCATG+GGG - Chr7:92537106-92537125 MsG0780041569.01.T01:CDS 55.0%
TGGTCATCCGGCAATGGCAA+TGG - Chr7:92537174-92537193 MsG0780041569.01.T01:CDS 55.0%
TGTAGCCGACCCCACTTAGT+GGG - Chr7:92536078-92536097 MsG0780041569.01.T01:CDS 55.0%
! AACAAACGGCGCCGGATCAA+CGG + Chr7:92534858-92534877 None:intergenic 55.0%
! ACCGAGAGCGAGAAGTGTGA+CGG + Chr7:92534693-92534712 None:intergenic 55.0%
! AGCAGAGCATTTGCCTGTGG+TGG - Chr7:92536976-92536995 MsG0780041569.01.T01:CDS 55.0%
! AGTGGCTGGGGTTTGAAACC+CGG + Chr7:92535266-92535285 None:intergenic 55.0%
!! CATTGCGATGGTGCTGGTTG+AGG + Chr7:92536763-92536782 None:intergenic 55.0%
!! GAAGCCGGTACGGTATTGAC+CGG + Chr7:92534759-92534778 None:intergenic 55.0%
!! GGTCAATACCGTACCGGCTT+CGG - Chr7:92534758-92534777 MsG0780041569.01.T01:CDS 55.0%
ACGAAGGCCACAACCACCAC+AGG + Chr7:92536992-92537011 None:intergenic 60.0%
CACGCTTCTCAAACTGCCGC+AGG - Chr7:92537075-92537094 MsG0780041569.01.T01:CDS 60.0%
CATCCGGCAATGGCAATGGC+CGG - Chr7:92537178-92537197 MsG0780041569.01.T01:CDS 60.0%
CATCCGGCCATTGCCATTGC+CGG + Chr7:92537184-92537203 None:intergenic 60.0%
GACAGGAAGCTCCCATGCCT+TGG + Chr7:92536716-92536735 None:intergenic 60.0%
GCAATGGCCGGATGCTTTGC+TGG - Chr7:92537190-92537209 MsG0780041569.01.T01:CDS 60.0%
GCCGTCACACTTCTCGCTCT+CGG - Chr7:92534689-92534708 MsG0780041569.01.T01:CDS 60.0%
TTCGGCGCTATACTCTCCGC+CGG - Chr7:92534776-92534795 MsG0780041569.01.T01:CDS 60.0%
! ACAAACGGCGCCGGATCAAC+GGG + Chr7:92534857-92534876 None:intergenic 60.0%
! GAGAGCGAGAAGTGTGACGG+CGG + Chr7:92534690-92534709 None:intergenic 60.0%
! GGAGAGTATAGCGCCGAAGC+CGG + Chr7:92534774-92534793 None:intergenic 60.0%
! GTATAGCGCCGAAGCCGGTA+CGG + Chr7:92534769-92534788 None:intergenic 60.0%
! GTATTGACCGGCGCGAAGAG+CGG + Chr7:92534747-92534766 None:intergenic 60.0%
!! AGCAGAGACGAAAGCACCGG+CGG + Chr7:92534795-92534814 None:intergenic 60.0%
! CGCGCCGGTCAATACCGTAC+CGG - Chr7:92534752-92534771 MsG0780041569.01.T01:CDS 65.0%
! GGCGCCGGATCAACGGGAAA+AGG + Chr7:92534851-92534870 None:intergenic 65.0%
TCTCTCGCCGCTCTTCGCGC+CGG - Chr7:92534737-92534756 MsG0780041569.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr7 gene 92534683 92537312 92534683 ID=MsG0780041569.01;Name=MsG0780041569.01
Chr7 mRNA 92534683 92537312 92534683 ID=MsG0780041569.01.T01;Parent=MsG0780041569.01;Name=MsG0780041569.01.T01;_AED=0.46;_eAED=0.58;_QI=0|0|0|1|0.66|0.75|4|0|334
Chr7 exon 92536907 92537312 92536907 ID=MsG0780041569.01.T01:exon:21943;Parent=MsG0780041569.01.T01
Chr7 exon 92535953 92536146 92535953 ID=MsG0780041569.01.T01:exon:21942;Parent=MsG0780041569.01.T01
Chr7 exon 92535154 92535286 92535154 ID=MsG0780041569.01.T01:exon:21941;Parent=MsG0780041569.01.T01
Chr7 exon 92534683 92534954 92534683 ID=MsG0780041569.01.T01:exon:21940;Parent=MsG0780041569.01.T01
Chr7 CDS 92536907 92537312 92536907 ID=MsG0780041569.01.T01:cds;Parent=MsG0780041569.01.T01
Chr7 CDS 92535953 92536146 92535953 ID=MsG0780041569.01.T01:cds;Parent=MsG0780041569.01.T01
Chr7 CDS 92535154 92535286 92535154 ID=MsG0780041569.01.T01:cds;Parent=MsG0780041569.01.T01
Chr7 CDS 92534683 92534954 92534683 ID=MsG0780041569.01.T01:cds;Parent=MsG0780041569.01.T01
Gene Sequence

>MsG0780041569.01.T01

ATGGCCGCCGTCACACTTCTCGCTCTCGGTAACGGCTCTCCCGACGTCTTCTCATCTCTCGCCGCTCTTCGCGCCGGTCAATACCGTACCGGCTTCGGCGCTATACTCTCCGCCGGTGCTTTCGTCTCTGCTCTTGTTGTCGGCTTTGTCGCGATCTACGCTGCTCCTTTTCCCGTTGATCCGGCGCCGTTTGTTAGAGATGTGTTGTTCTACTTAACTGCTGCTATGTTTCTGTTTATGTTTATCTTAGTGCTGAGATTTTTCTATGGCAAGCCGTTGGATTCGTTGCGTTCTATCTTTTCTTTGTTGGTTTTGTGTTTTACATGGATTTGGGAATGGCCAATCGGAGGGAAAAGAGTTCTGCGGATCTTGAGGGACAAATTGATTCCTATTACGACGAAAAAGCTTATAGTAGAAAAGTTGGTAGAAAATAGGCTTAGATGGTTTGGACATGTAGAGAGAAGACCCGTAGATGCCGTTGTAAGAAGAGTAGATCAAATGGAGGAGAGTCAGGTTAAAAGAGGTAGAGGAAGACCTAAGAAAACCATTCGAGAAACCATTAGAAAAGATTTAGAGGTGAATGAGTTGAATCCAAATATGATTTCCAAGGCATGGGAGCTTCCTGTCTCAACCCTCTTAAGATTGACAATCCCTCAACCAGCACCATCGCAATGGAACAGATTTTATGCATCGGCCAATATCGCTCTTTGTCCACTAGCCCTCTTGTATGCATCTGGAGAGCTCGTGAATTGCCTTGAAGCTTTAGGCACGCTTCTCAAACTGCCGCAGGCATTCCTAGGTCTTACCGTGCTAGCATGGGGAAATTCAGTGGGGGATCTTGTTGCTGATGTTGCAGTTGCTAAAGCTGGTCATCCGGCAATGGCAATGGCCGGATGCTTTGCTGGACCAATGTTTAACATGCTTGTTGGTCTTGGAACTGCTTTGGTCATACAGACGACAAATATATATCCTAAAGCCTATGAACTTAATTCCACGTTGGTATAG
Protein sequence

>MsG0780041569.01.T01

MAAVTLLALGNGSPDVFSSLAALRAGQYRTGFGAILSAGAFVSALVVGFVAIYAAPFPVDPAPFVRDVLFYLTAAMFLFMFILVLRFFYGKPLDSLRSIFSLLVLCFTWIWEWPIGGKRVLRILRDKLIPITTKKLIVEKLVENRLRWFGHVERRPVDAVVRRVDQMEESQVKRGRGRPKKTIRETIRKDLEVNELNPNMISKAWELPVSTLLRLTIPQPAPSQWNRFYASANIALCPLALLYASGELVNCLEALGTLLKLPQAFLGLTVLAWGNSVGDLVADVAVAKAGHPAMAMAGCFAGPMFNMLVGLGTALVIQTTNIYPKAYELNSTLV*